Query psy7674
Match_columns 164
No_of_seqs 267 out of 1715
Neff 9.0
Searched_HMMs 46136
Date Sat Aug 17 00:31:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0405|consensus 99.7 1.6E-17 3.5E-22 129.3 5.6 91 74-164 116-209 (478)
2 KOG4716|consensus 99.7 2.5E-17 5.5E-22 128.0 6.6 94 71-164 121-218 (503)
3 COG1249 Lpd Pyruvate/2-oxoglut 99.7 1.1E-16 2.4E-21 131.0 10.1 91 73-163 99-192 (454)
4 TIGR01438 TGR thioredoxin and 99.7 5.8E-16 1.2E-20 128.4 10.2 91 73-163 105-199 (484)
5 PLN02546 glutathione reductase 99.6 7.9E-16 1.7E-20 129.3 9.6 88 74-163 184-271 (558)
6 TIGR01423 trypano_reduc trypan 99.6 2.5E-15 5.4E-20 124.6 9.6 91 73-163 108-206 (486)
7 TIGR01421 gluta_reduc_1 glutat 99.6 4.5E-15 9.7E-20 122.1 10.4 88 74-163 97-185 (450)
8 PRK06116 glutathione reductase 99.6 5E-15 1.1E-19 121.7 10.4 88 74-163 99-186 (450)
9 PRK07846 mycothione reductase; 99.6 3.3E-15 7.1E-20 122.9 9.3 84 78-163 99-185 (451)
10 PRK06467 dihydrolipoamide dehy 99.6 7.1E-15 1.5E-19 121.5 10.6 89 75-163 100-193 (471)
11 PTZ00058 glutathione reductase 99.6 5.7E-15 1.2E-19 124.1 9.8 89 74-163 141-256 (561)
12 TIGR01424 gluta_reduc_2 glutat 99.6 7.4E-15 1.6E-19 120.6 10.0 91 73-163 95-185 (446)
13 PLN02507 glutathione reductase 99.6 8.6E-15 1.9E-19 121.8 10.2 89 75-163 131-222 (499)
14 PRK06370 mercuric reductase; V 99.6 1.3E-14 2.8E-19 119.7 10.3 88 74-163 100-190 (463)
15 PRK06912 acoL dihydrolipoamide 99.6 1.9E-14 4.2E-19 118.6 10.4 90 74-163 96-189 (458)
16 TIGR02053 MerA mercuric reduct 99.6 3.1E-14 6.8E-19 117.4 10.5 90 74-163 94-185 (463)
17 PRK07251 pyridine nucleotide-d 99.5 3.6E-14 7.8E-19 116.3 10.2 88 76-163 84-176 (438)
18 PRK05249 soluble pyridine nucl 99.5 6E-14 1.3E-18 115.6 10.4 90 74-163 100-194 (461)
19 PRK14727 putative mercuric red 99.5 7.5E-14 1.6E-18 115.7 10.4 89 75-163 113-207 (479)
20 PRK14694 putative mercuric red 99.5 6.7E-14 1.5E-18 115.6 10.1 88 76-163 104-197 (468)
21 PTZ00153 lipoamide dehydrogena 99.5 5.5E-14 1.2E-18 119.9 9.8 90 74-163 233-331 (659)
22 PTZ00052 thioredoxin reductase 99.5 7.3E-14 1.6E-18 116.3 9.8 90 74-163 108-201 (499)
23 PRK13748 putative mercuric red 99.5 9.8E-14 2.1E-18 116.9 10.1 86 78-163 198-289 (561)
24 PRK05976 dihydrolipoamide dehy 99.5 1.3E-13 2.9E-18 113.9 10.7 90 74-163 98-199 (472)
25 PRK07845 flavoprotein disulfid 99.5 1.2E-13 2.5E-18 114.2 10.2 91 73-163 97-196 (466)
26 TIGR03452 mycothione_red mycot 99.5 1E-13 2.2E-18 114.1 8.7 82 80-163 104-188 (452)
27 PRK08010 pyridine nucleotide-d 99.5 2.4E-13 5.2E-18 111.5 10.4 83 81-163 90-177 (441)
28 PRK04965 NADH:flavorubredoxin 99.5 5.6E-13 1.2E-17 107.3 10.3 87 75-163 65-160 (377)
29 PRK09754 phenylpropionate diox 99.4 4.8E-13 1E-17 108.3 9.7 87 75-163 65-163 (396)
30 PRK06416 dihydrolipoamide dehy 99.4 5.8E-13 1.3E-17 109.8 10.4 90 74-163 98-191 (462)
31 PRK06115 dihydrolipoamide dehy 99.4 1.1E-12 2.4E-17 108.3 10.9 88 74-163 99-193 (466)
32 TIGR01350 lipoamide_DH dihydro 99.4 9.6E-13 2.1E-17 108.4 10.4 90 74-163 95-189 (461)
33 PRK14989 nitrite reductase sub 99.4 6.5E-13 1.4E-17 116.3 9.7 88 74-163 65-164 (847)
34 TIGR03169 Nterm_to_SelD pyridi 99.4 5.1E-13 1.1E-17 106.8 8.3 89 73-163 59-164 (364)
35 PRK06327 dihydrolipoamide dehy 99.4 1.2E-12 2.6E-17 108.4 10.5 90 74-163 106-202 (475)
36 KOG1335|consensus 99.4 3.2E-13 6.9E-18 106.7 6.5 89 73-163 135-230 (506)
37 KOG1336|consensus 99.4 2.6E-12 5.7E-17 103.8 11.5 110 52-163 99-232 (478)
38 COG3634 AhpF Alkyl hydroperoxi 99.4 6.6E-13 1.4E-17 104.0 7.7 90 72-163 270-373 (520)
39 PRK07818 dihydrolipoamide dehy 99.4 2.8E-12 6E-17 106.0 10.5 87 77-163 101-191 (466)
40 TIGR02374 nitri_red_nirB nitri 99.4 2.2E-12 4.7E-17 112.6 9.7 88 74-163 60-159 (785)
41 COG1252 Ndh NADH dehydrogenase 99.4 9.2E-13 2E-17 106.2 5.8 93 71-164 60-175 (405)
42 KOG2495|consensus 99.4 1.7E-12 3.6E-17 103.8 6.6 127 38-164 53-238 (491)
43 COG1251 NirB NAD(P)H-nitrite r 99.3 1.2E-12 2.6E-17 110.5 5.8 139 22-163 14-164 (793)
44 PTZ00318 NADH dehydrogenase-li 99.3 2.9E-12 6.4E-17 104.7 8.1 90 74-163 68-192 (424)
45 PRK06292 dihydrolipoamide dehy 99.3 7.6E-12 1.6E-16 103.1 10.4 84 76-163 100-188 (460)
46 PRK13512 coenzyme A disulfide 99.3 9.9E-12 2.1E-16 102.0 10.9 86 77-163 67-167 (438)
47 KOG1752|consensus 99.3 1.9E-12 4.2E-17 85.7 3.6 53 2-54 30-82 (104)
48 TIGR03385 CoA_CoA_reduc CoA-di 99.2 3.2E-11 6.9E-16 98.5 8.4 88 76-163 52-156 (427)
49 PRK15317 alkyl hydroperoxide r 99.2 3.9E-10 8.4E-15 94.4 13.3 90 73-164 271-371 (517)
50 PRK09564 coenzyme A disulfide 99.2 8.4E-11 1.8E-15 96.4 8.1 89 75-163 63-168 (444)
51 PRK10262 thioredoxin reductase 99.2 1.6E-10 3.4E-15 91.1 8.7 91 74-164 69-166 (321)
52 TIGR01292 TRX_reduct thioredox 99.1 4.1E-10 8.8E-15 87.2 9.2 91 72-163 61-160 (300)
53 TIGR03143 AhpF_homolog putativ 99.1 5.5E-10 1.2E-14 94.3 8.6 89 73-163 65-162 (555)
54 TIGR03140 AhpF alkyl hydropero 99.1 7E-10 1.5E-14 92.9 8.8 90 73-164 272-372 (515)
55 PRK12831 putative oxidoreducta 99.0 3.3E-10 7.2E-15 93.7 4.2 86 75-163 198-300 (464)
56 TIGR01316 gltA glutamate synth 98.9 5.6E-10 1.2E-14 92.0 3.4 84 75-163 190-291 (449)
57 TIGR02189 GlrX-like_plant Glut 98.9 1.4E-09 3E-14 71.8 4.1 53 2-54 24-76 (99)
58 PRK10824 glutaredoxin-4; Provi 98.9 1.2E-09 2.6E-14 73.7 3.7 71 3-85 37-107 (115)
59 PRK12770 putative glutamate sy 98.9 3.2E-09 7E-14 84.8 6.4 89 75-163 75-191 (352)
60 COG0492 TrxB Thioredoxin reduc 98.9 7.6E-08 1.6E-12 75.6 13.1 145 14-164 5-163 (305)
61 PF13738 Pyr_redox_3: Pyridine 98.9 1.6E-08 3.5E-13 74.2 8.6 91 73-164 87-187 (203)
62 PRK11749 dihydropyrimidine deh 98.8 4.2E-09 9E-14 87.0 4.1 85 74-163 196-292 (457)
63 PRK12779 putative bifunctional 98.8 1.9E-08 4.2E-13 89.4 8.1 108 52-163 329-466 (944)
64 PRK12778 putative bifunctional 98.8 6.1E-09 1.3E-13 90.8 4.6 85 75-163 488-589 (752)
65 PHA03050 glutaredoxin; Provisi 98.8 6.9E-09 1.5E-13 69.5 3.6 52 2-53 29-83 (108)
66 PLN02852 ferredoxin-NADP+ redu 98.8 2.2E-08 4.9E-13 83.2 7.2 85 74-163 85-185 (491)
67 PLN02172 flavin-containing mon 98.7 1E-07 2.2E-12 78.9 9.5 91 73-163 116-223 (461)
68 PRK09853 putative selenate red 98.7 4E-08 8.6E-13 87.2 6.5 81 76-162 597-686 (1019)
69 PRK12810 gltD glutamate syntha 98.7 2.5E-08 5.5E-13 82.7 4.6 83 75-162 200-299 (471)
70 PRK13984 putative oxidoreducta 98.6 2.1E-08 4.5E-13 85.5 3.9 84 75-163 340-437 (604)
71 TIGR02189 GlrX-like_plant Glut 98.6 1.8E-09 3.9E-14 71.2 -2.0 78 49-143 4-84 (99)
72 COG0695 GrxC Glutaredoxin and 98.6 2.8E-08 6.1E-13 63.0 3.5 50 2-52 17-66 (80)
73 TIGR00365 monothiol glutaredox 98.6 3.1E-08 6.8E-13 65.1 3.4 50 2-54 33-82 (97)
74 PRK12775 putative trifunctiona 98.6 3.7E-08 8E-13 88.2 4.6 87 74-163 486-590 (1006)
75 KOG1346|consensus 98.6 4.4E-08 9.6E-13 78.8 4.3 82 80-163 269-366 (659)
76 cd03028 GRX_PICOT_like Glutare 98.6 5.2E-08 1.1E-12 63.1 3.8 50 2-54 29-78 (90)
77 KOG1752|consensus 98.6 6.7E-09 1.5E-13 68.8 -1.3 77 50-143 11-90 (104)
78 TIGR01317 GOGAT_sm_gam glutama 98.5 9.5E-08 2.1E-12 79.6 4.6 82 75-161 200-300 (485)
79 PHA03050 glutaredoxin; Provisi 98.5 6.8E-09 1.5E-13 69.5 -1.8 80 50-143 10-92 (108)
80 KOG0404|consensus 98.4 4.4E-07 9.4E-12 67.8 5.8 127 35-164 28-177 (322)
81 PRK12814 putative NADPH-depend 98.4 1.6E-07 3.5E-12 80.9 3.8 84 75-163 250-342 (652)
82 cd03030 GRX_SH3BGR Glutaredoxi 98.4 2.9E-07 6.3E-12 59.8 3.7 48 2-52 22-73 (92)
83 PF00462 Glutaredoxin: Glutare 98.4 1.5E-07 3.3E-12 56.1 2.2 46 2-50 15-60 (60)
84 COG0695 GrxC Glutaredoxin and 98.4 2.7E-08 5.8E-13 63.1 -1.3 72 54-141 2-74 (80)
85 PRK10824 glutaredoxin-4; Provi 98.4 2.1E-08 4.7E-13 67.6 -2.0 75 50-143 12-93 (115)
86 TIGR03315 Se_ygfK putative sel 98.4 4.5E-07 9.7E-12 80.9 5.5 82 76-163 595-685 (1012)
87 COG0446 HcaD Uncharacterized N 98.3 7.7E-07 1.7E-11 71.6 4.8 83 79-163 64-155 (415)
88 TIGR01372 soxA sarcosine oxida 98.3 5.7E-07 1.2E-11 80.7 4.3 58 106-163 272-336 (985)
89 PRK06567 putative bifunctional 98.3 7.2E-07 1.6E-11 79.0 4.7 56 106-161 495-567 (1028)
90 PTZ00062 glutaredoxin; Provisi 98.3 4.7E-07 1E-11 67.1 3.0 52 2-56 134-185 (204)
91 cd03027 GRX_DEP Glutaredoxin ( 98.3 9.2E-07 2E-11 54.8 3.8 49 2-53 17-65 (73)
92 TIGR02180 GRX_euk Glutaredoxin 98.3 1.5E-06 3.2E-11 54.9 4.3 51 2-52 15-67 (84)
93 COG2072 TrkA Predicted flavopr 98.2 2.5E-06 5.5E-11 70.4 6.0 57 107-163 131-194 (443)
94 TIGR02181 GRX_bact Glutaredoxi 98.2 1.9E-06 4.2E-11 54.0 4.0 49 2-53 15-63 (79)
95 PF07992 Pyr_redox_2: Pyridine 98.2 9.7E-07 2.1E-11 64.5 2.8 76 77-152 67-160 (201)
96 cd03419 GRX_GRXh_1_2_like Glut 98.2 2.2E-06 4.9E-11 53.9 4.0 51 2-52 16-66 (82)
97 TIGR00365 monothiol glutaredox 98.2 1.6E-07 3.4E-12 61.7 -1.9 75 50-143 9-90 (97)
98 cd03031 GRX_GRX_like Glutaredo 98.1 2.5E-06 5.4E-11 60.1 3.7 50 2-54 22-75 (147)
99 TIGR01318 gltD_gamma_fam gluta 98.1 3.6E-06 7.7E-11 69.9 5.0 83 75-162 198-300 (467)
100 PRK10638 glutaredoxin 3; Provi 98.1 4.1E-06 9E-11 53.2 3.7 49 2-53 18-66 (83)
101 cd03418 GRX_GRXb_1_3_like Glut 98.1 5E-06 1.1E-10 51.4 3.8 49 2-53 16-65 (75)
102 PF00743 FMO-like: Flavin-bind 98.1 1.2E-05 2.7E-10 67.7 6.9 64 101-164 131-203 (531)
103 PF13434 K_oxygenase: L-lysine 98.0 4E-06 8.8E-11 66.9 3.1 62 102-163 141-209 (341)
104 cd03028 GRX_PICOT_like Glutare 98.0 4.7E-07 1E-11 58.6 -2.2 75 50-143 5-86 (90)
105 cd03418 GRX_GRXb_1_3_like Glut 98.0 6E-07 1.3E-11 55.6 -2.0 71 54-142 1-73 (75)
106 cd03029 GRX_hybridPRX5 Glutare 97.9 1.6E-06 3.5E-11 53.5 -0.8 66 54-139 2-69 (72)
107 TIGR02190 GlrX-dom Glutaredoxi 97.9 1.1E-05 2.4E-10 50.8 2.9 48 2-53 24-71 (79)
108 cd03029 GRX_hybridPRX5 Glutare 97.9 1.6E-05 3.5E-10 49.0 3.4 47 2-52 17-63 (72)
109 cd03027 GRX_DEP Glutaredoxin ( 97.9 1.7E-06 3.7E-11 53.6 -1.1 69 54-141 2-72 (73)
110 PRK12809 putative oxidoreducta 97.9 3.3E-05 7.1E-10 66.6 6.3 83 75-162 367-469 (639)
111 TIGR02181 GRX_bact Glutaredoxi 97.8 1E-06 2.2E-11 55.3 -2.4 70 55-143 1-72 (79)
112 PRK12769 putative oxidoreducta 97.7 3.3E-05 7.1E-10 66.7 4.5 83 75-162 384-486 (654)
113 cd02066 GRX_family Glutaredoxi 97.7 4.2E-05 9.1E-10 46.2 3.7 48 2-52 16-63 (72)
114 PRK11200 grxA glutaredoxin 1; 97.7 4.8E-05 1E-09 48.4 3.8 41 9-52 29-71 (85)
115 TIGR02183 GRXA Glutaredoxin, G 97.7 4.3E-06 9.4E-11 53.5 -1.6 74 55-141 2-78 (86)
116 PRK10638 glutaredoxin 3; Provi 97.7 4.1E-06 8.9E-11 53.2 -1.9 71 54-143 3-75 (83)
117 TIGR02183 GRXA Glutaredoxin, G 97.6 6.7E-05 1.5E-09 48.0 3.7 40 11-53 30-71 (86)
118 COG0278 Glutaredoxin-related p 97.6 2.7E-05 5.8E-10 50.7 1.7 47 7-56 41-88 (105)
119 PRK12759 bifunctional gluaredo 97.6 3.7E-05 7.9E-10 62.9 3.0 52 2-53 18-74 (410)
120 TIGR02190 GlrX-dom Glutaredoxi 97.6 4.9E-05 1.1E-09 47.8 2.2 68 52-139 7-76 (79)
121 TIGR02180 GRX_euk Glutaredoxin 97.6 6.4E-06 1.4E-10 51.9 -2.0 71 55-142 1-76 (84)
122 PTZ00062 glutaredoxin; Provisi 97.5 1.3E-05 2.8E-10 59.5 -1.7 101 23-143 82-191 (204)
123 TIGR02194 GlrX_NrdH Glutaredox 97.4 0.00012 2.7E-09 45.0 2.8 46 2-51 15-61 (72)
124 KOG1399|consensus 97.3 0.00042 9.1E-09 57.3 5.0 58 105-162 138-204 (448)
125 PRK12759 bifunctional gluaredo 97.2 0.00014 3E-09 59.6 1.7 70 54-139 3-79 (410)
126 PF00462 Glutaredoxin: Glutare 97.2 0.00018 3.8E-09 42.6 1.6 26 55-85 1-26 (60)
127 PRK10329 glutaredoxin-like pro 97.2 0.00038 8.2E-09 44.0 3.2 46 2-51 17-62 (81)
128 KOG1800|consensus 97.2 0.00053 1.1E-08 55.1 4.5 124 35-163 15-178 (468)
129 PRK10329 glutaredoxin-like pro 97.2 0.00019 4.2E-09 45.4 1.6 27 54-85 2-28 (81)
130 cd03419 GRX_GRXh_1_2_like Glut 97.1 3.8E-05 8.3E-10 48.2 -2.1 27 54-85 1-27 (82)
131 KOG0911|consensus 97.1 0.0004 8.7E-09 51.7 2.7 49 5-56 163-211 (227)
132 COG0493 GltD NADPH-dependent g 97.0 0.0006 1.3E-08 56.6 3.4 105 52-161 146-279 (457)
133 PTZ00188 adrenodoxin reductase 97.0 0.0023 5E-08 53.5 6.4 20 144-163 197-216 (506)
134 COG3486 IucD Lysine/ornithine 96.9 0.002 4.2E-08 52.3 5.2 56 105-161 142-204 (436)
135 TIGR02194 GlrX_NrdH Glutaredox 96.9 0.00049 1.1E-08 42.3 1.4 26 55-85 1-26 (72)
136 PRK11200 grxA glutaredoxin 1; 96.9 0.00071 1.5E-08 42.9 2.1 69 54-140 2-78 (85)
137 cd03031 GRX_GRX_like Glutaredo 96.8 0.00012 2.6E-09 51.6 -1.8 71 54-142 1-82 (147)
138 KOG0399|consensus 96.8 0.0011 2.4E-08 59.8 3.0 103 52-159 1808-1939(2142)
139 KOG2755|consensus 96.7 0.0025 5.4E-08 49.0 4.2 65 96-163 81-153 (334)
140 cd02976 NrdH NrdH-redoxin (Nrd 96.6 0.003 6.6E-08 38.0 3.7 47 2-51 16-62 (73)
141 cd02066 GRX_family Glutaredoxi 96.6 0.0015 3.3E-08 39.1 2.2 27 54-85 1-27 (72)
142 PRK15317 alkyl hydroperoxide r 96.6 0.0021 4.5E-08 54.2 3.4 20 144-163 211-230 (517)
143 TIGR03140 AhpF alkyl hydropero 96.5 0.0015 3.3E-08 54.9 2.2 22 143-164 211-232 (515)
144 PRK12771 putative glutamate sy 96.3 0.0057 1.2E-07 52.1 4.5 82 76-162 195-285 (564)
145 TIGR02200 GlrX_actino Glutared 96.3 0.0026 5.6E-08 39.0 1.8 27 54-85 1-27 (77)
146 PRK09897 hypothetical protein; 96.2 0.042 9E-07 46.7 9.0 84 78-163 117-210 (534)
147 TIGR02196 GlrX_YruB Glutaredox 96.1 0.0049 1.1E-07 37.1 2.4 27 55-86 2-28 (74)
148 TIGR02196 GlrX_YruB Glutaredox 96.1 0.0097 2.1E-07 35.7 3.6 44 3-49 17-60 (74)
149 cd02977 ArsC_family Arsenate R 95.9 0.0041 8.9E-08 41.1 1.6 27 55-86 1-27 (105)
150 cd03036 ArsC_like Arsenate Red 95.9 0.0043 9.3E-08 41.6 1.7 27 55-86 1-27 (111)
151 cd02973 TRX_GRX_like Thioredox 95.9 0.0072 1.6E-07 36.2 2.5 17 54-70 2-18 (67)
152 PRK13512 coenzyme A disulfide 95.5 0.1 2.2E-06 43.1 8.6 81 41-123 150-244 (438)
153 COG1249 Lpd Pyruvate/2-oxoglut 95.5 0.064 1.4E-06 44.7 7.3 73 52-124 196-276 (454)
154 KOG2824|consensus 95.4 0.0089 1.9E-07 45.9 1.7 54 1-57 152-209 (281)
155 PRK05976 dihydrolipoamide dehy 95.3 0.12 2.5E-06 43.1 8.3 74 52-125 203-286 (472)
156 cd02976 NrdH NrdH-redoxin (Nrd 95.3 0.014 3.1E-07 34.9 2.1 27 55-86 2-28 (73)
157 PRK01655 spxA transcriptional 95.2 0.012 2.6E-07 40.6 1.8 27 55-86 2-28 (131)
158 TIGR02200 GlrX_actino Glutared 95.1 0.023 5E-07 34.6 2.7 43 2-47 16-59 (77)
159 PRK07251 pyridine nucleotide-d 95.0 0.12 2.5E-06 42.6 7.4 82 41-124 159-257 (438)
160 PRK06912 acoL dihydrolipoamide 94.9 0.14 2.9E-06 42.6 7.6 73 52-124 193-272 (458)
161 TIGR03385 CoA_CoA_reduc CoA-di 94.7 0.22 4.7E-06 40.8 8.3 81 41-123 139-236 (427)
162 PF04908 SH3BGR: SH3-binding, 94.6 0.031 6.7E-07 36.7 2.5 46 3-51 24-78 (99)
163 TIGR01350 lipoamide_DH dihydro 94.6 0.26 5.5E-06 40.8 8.5 72 52-123 193-272 (461)
164 TIGR03169 Nterm_to_SelD pyridi 94.6 0.17 3.7E-06 40.5 7.2 66 54-121 176-244 (364)
165 KOG1336|consensus 94.6 0.22 4.8E-06 41.4 7.8 98 25-126 201-319 (478)
166 TIGR01617 arsC_related transcr 94.4 0.02 4.4E-07 38.6 1.3 27 55-86 1-27 (117)
167 PRK06416 dihydrolipoamide dehy 94.0 0.37 8E-06 39.9 8.2 73 52-124 195-276 (462)
168 PRK06370 mercuric reductase; V 93.8 0.35 7.7E-06 40.1 7.7 72 52-123 194-274 (463)
169 cd03032 ArsC_Spx Arsenate Redu 93.8 0.038 8.2E-07 37.1 1.6 27 55-86 2-28 (115)
170 PRK12559 transcriptional regul 93.6 0.042 9.1E-07 37.9 1.6 27 55-86 2-28 (131)
171 TIGR00411 redox_disulf_1 small 93.5 0.052 1.1E-06 33.5 1.8 17 54-70 2-18 (82)
172 cd00570 GST_N_family Glutathio 93.3 0.12 2.5E-06 30.2 3.1 46 3-51 16-61 (71)
173 PRK14694 putative mercuric red 93.3 0.44 9.5E-06 39.7 7.5 71 52-124 201-277 (468)
174 PRK13728 conjugal transfer pro 93.1 0.072 1.6E-06 38.9 2.3 40 46-86 62-103 (181)
175 TIGR02053 MerA mercuric reduct 93.0 0.61 1.3E-05 38.7 8.0 73 52-124 189-270 (463)
176 PRK13344 spxA transcriptional 93.0 0.067 1.4E-06 37.0 1.9 27 55-86 2-28 (132)
177 TIGR03862 flavo_PP4765 unchara 93.0 0.39 8.4E-06 39.1 6.5 47 74-120 92-141 (376)
178 PRK05249 soluble pyridine nucl 92.9 0.6 1.3E-05 38.6 7.7 70 52-123 198-275 (461)
179 PHA02125 thioredoxin-like prot 92.8 0.072 1.6E-06 32.8 1.7 16 55-70 2-17 (75)
180 TIGR01295 PedC_BrcD bacterioci 92.6 0.074 1.6E-06 36.1 1.7 17 54-70 26-42 (122)
181 TIGR01421 gluta_reduc_1 glutat 92.5 0.69 1.5E-05 38.4 7.6 73 52-124 189-269 (450)
182 PTZ00318 NADH dehydrogenase-li 92.5 0.45 9.7E-06 39.1 6.5 49 71-121 231-281 (424)
183 KOG3425|consensus 92.5 0.12 2.6E-06 35.0 2.5 40 25-70 13-52 (128)
184 PRK08010 pyridine nucleotide-d 92.5 0.59 1.3E-05 38.5 7.1 72 52-123 181-257 (441)
185 cd03035 ArsC_Yffb Arsenate Red 92.5 0.068 1.5E-06 35.4 1.3 27 55-86 1-27 (105)
186 PRK06327 dihydrolipoamide dehy 92.5 0.8 1.7E-05 38.2 8.0 73 52-124 206-288 (475)
187 TIGR01424 gluta_reduc_2 glutat 92.4 0.77 1.7E-05 38.0 7.7 70 52-123 189-266 (446)
188 PRK06116 glutathione reductase 92.3 0.77 1.7E-05 37.9 7.6 71 52-124 190-269 (450)
189 PRK11749 dihydropyrimidine deh 92.2 0.08 1.7E-06 43.9 1.7 22 142-163 138-159 (457)
190 COG1252 Ndh NADH dehydrogenase 92.2 0.41 8.8E-06 39.3 5.7 51 71-122 212-264 (405)
191 PRK07818 dihydrolipoamide dehy 92.1 0.89 1.9E-05 37.8 7.8 72 52-123 195-276 (466)
192 PRK07845 flavoprotein disulfid 92.1 0.89 1.9E-05 37.9 7.8 71 52-124 200-278 (466)
193 PTZ00188 adrenodoxin reductase 92.0 0.08 1.7E-06 44.5 1.5 21 143-163 38-58 (506)
194 cd02973 TRX_GRX_like Thioredox 92.0 0.28 6.1E-06 29.0 3.6 35 10-51 30-64 (67)
195 COG2509 Uncharacterized FAD-de 91.9 1.2 2.6E-05 37.1 8.0 66 40-119 157-229 (486)
196 PLN02507 glutathione reductase 91.8 1 2.2E-05 37.9 7.8 73 52-124 226-304 (499)
197 PRK06567 putative bifunctional 91.5 0.11 2.4E-06 47.1 1.9 22 143-164 382-403 (1028)
198 COG2081 Predicted flavoprotein 91.4 0.75 1.6E-05 37.6 6.3 53 65-119 104-166 (408)
199 KOG1335|consensus 91.4 1.6 3.6E-05 35.8 8.1 63 61-123 245-317 (506)
200 PTZ00058 glutathione reductase 91.2 1.2 2.6E-05 38.3 7.7 83 41-123 239-339 (561)
201 PRK14727 putative mercuric red 91.2 1 2.2E-05 37.7 7.1 82 41-124 190-287 (479)
202 cd03040 GST_N_mPGES2 GST_N fam 91.1 0.14 3.1E-06 31.3 1.6 27 55-86 2-28 (77)
203 PRK13748 putative mercuric red 90.9 1 2.2E-05 38.3 7.1 71 52-124 293-369 (561)
204 PRK06115 dihydrolipoamide dehy 90.9 1.3 2.9E-05 36.8 7.6 72 52-123 197-279 (466)
205 PRK09754 phenylpropionate diox 90.7 1.2 2.7E-05 36.1 7.2 79 42-122 147-243 (396)
206 COG4529 Uncharacterized protei 90.7 1.6 3.5E-05 36.5 7.7 80 83-162 122-214 (474)
207 PRK12831 putative oxidoreducta 90.7 0.15 3.2E-06 42.5 1.8 21 143-163 139-159 (464)
208 TIGR01316 gltA glutamate synth 90.6 0.15 3.2E-06 42.3 1.8 20 144-163 133-152 (449)
209 cd02975 PfPDO_like_N Pyrococcu 90.4 0.17 3.6E-06 33.8 1.5 16 55-70 26-41 (113)
210 cd03033 ArsC_15kD Arsenate Red 90.4 0.17 3.6E-06 34.0 1.5 28 54-86 1-28 (113)
211 TIGR01438 TGR thioredoxin and 90.2 1.9 4.1E-05 36.2 8.0 83 42-124 183-283 (484)
212 cd03041 GST_N_2GST_N GST_N fam 90.2 0.18 4E-06 31.0 1.5 26 55-85 2-27 (77)
213 TIGR01318 gltD_gamma_fam gluta 90.0 0.18 4E-06 42.0 1.8 21 143-163 140-160 (467)
214 TIGR02738 TrbB type-F conjugat 89.8 0.31 6.8E-06 34.5 2.6 33 52-85 51-83 (153)
215 PRK12810 gltD glutamate syntha 89.5 0.21 4.6E-06 41.6 1.8 20 144-163 143-162 (471)
216 cd03060 GST_N_Omega_like GST_N 89.4 0.22 4.8E-06 30.0 1.4 25 56-85 2-26 (71)
217 PRK10262 thioredoxin reductase 89.3 2.2 4.7E-05 33.5 7.3 51 73-123 190-251 (321)
218 PTZ00052 thioredoxin reductase 89.0 2.7 5.9E-05 35.4 8.1 81 42-124 185-282 (499)
219 TIGR03315 Se_ygfK putative sel 88.9 0.22 4.7E-06 45.5 1.6 21 144-164 537-557 (1012)
220 PF13098 Thioredoxin_2: Thiore 88.9 0.14 3.1E-06 33.5 0.3 18 53-70 7-24 (112)
221 TIGR01317 GOGAT_sm_gam glutama 88.9 0.24 5.3E-06 41.5 1.8 20 144-163 143-162 (485)
222 PRK09853 putative selenate red 88.7 0.23 5E-06 45.3 1.6 21 144-164 539-559 (1019)
223 TIGR01423 trypano_reduc trypan 88.7 2.4 5.1E-05 35.7 7.5 68 54-123 215-291 (486)
224 PRK12769 putative oxidoreducta 88.4 0.27 5.8E-06 42.8 1.8 21 143-163 326-346 (654)
225 PF03486 HI0933_like: HI0933-l 88.4 1.6 3.5E-05 36.0 6.2 46 73-120 114-166 (409)
226 cd03060 GST_N_Omega_like GST_N 88.2 0.73 1.6E-05 27.6 3.2 43 2-48 15-58 (71)
227 PRK07846 mycothione reductase; 88.1 2.8 6.1E-05 34.8 7.5 81 41-124 168-266 (451)
228 KOG3851|consensus 87.9 0.13 2.8E-06 41.0 -0.5 46 82-128 106-153 (446)
229 PRK12779 putative bifunctional 87.9 0.3 6.5E-06 44.4 1.7 22 143-164 305-326 (944)
230 PRK12814 putative NADPH-depend 87.7 0.32 6.9E-06 42.4 1.8 20 144-163 193-212 (652)
231 PRK06292 dihydrolipoamide dehy 87.6 3.3 7.1E-05 34.3 7.7 72 52-124 192-272 (460)
232 PRK04965 NADH:flavorubredoxin 87.6 2.2 4.7E-05 34.4 6.4 48 73-122 188-241 (377)
233 PRK12809 putative oxidoreducta 87.1 0.33 7.2E-06 42.2 1.6 20 144-163 310-329 (639)
234 cd03037 GST_N_GRX2 GST_N famil 87.1 0.71 1.5E-05 27.6 2.6 44 2-50 15-59 (71)
235 PRK12778 putative bifunctional 87.0 0.38 8.3E-06 42.5 1.9 21 143-163 430-450 (752)
236 PLN00093 geranylgeranyl diphos 86.8 0.52 1.1E-05 39.2 2.5 22 142-163 37-58 (450)
237 cd03041 GST_N_2GST_N GST_N fam 86.8 1.1 2.3E-05 27.5 3.4 41 2-45 16-56 (77)
238 cd03037 GST_N_GRX2 GST_N famil 86.7 0.37 8.1E-06 28.9 1.2 26 55-85 1-26 (71)
239 cd02951 SoxW SoxW family; SoxW 86.4 0.3 6.6E-06 32.8 0.8 17 54-70 17-33 (125)
240 cd03059 GST_N_SspA GST_N famil 86.3 0.44 9.5E-06 28.6 1.4 27 55-86 1-27 (73)
241 PRK12771 putative glutamate sy 86.3 0.43 9.3E-06 40.8 1.8 21 143-163 136-156 (564)
242 TIGR02540 gpx7 putative glutat 86.2 0.83 1.8E-05 31.9 3.0 32 55-86 26-59 (153)
243 cd03045 GST_N_Delta_Epsilon GS 86.1 0.74 1.6E-05 27.6 2.4 46 2-48 15-60 (74)
244 KOG2495|consensus 86.0 2.2 4.8E-05 35.4 5.5 49 74-122 279-331 (491)
245 PRK09564 coenzyme A disulfide 86.0 2.6 5.7E-05 34.6 6.2 48 73-122 196-248 (444)
246 PLN02546 glutathione reductase 85.5 4.8 0.0001 34.6 7.7 83 41-123 254-353 (558)
247 PRK12775 putative trifunctiona 85.4 0.45 9.8E-06 43.6 1.6 20 144-163 430-449 (1006)
248 cd00570 GST_N_family Glutathio 84.8 0.61 1.3E-05 26.9 1.5 26 56-86 2-27 (71)
249 cd03051 GST_N_GTT2_like GST_N 84.8 0.75 1.6E-05 27.4 1.9 45 2-47 15-59 (74)
250 cd03055 GST_N_Omega GST_N fami 84.7 0.94 2E-05 28.7 2.4 43 2-48 33-76 (89)
251 PRK06467 dihydrolipoamide dehy 84.6 5.9 0.00013 33.1 7.8 72 52-124 197-278 (471)
252 PF08534 Redoxin: Redoxin; In 84.6 0.73 1.6E-05 31.7 2.0 32 55-86 32-66 (146)
253 PTZ00256 glutathione peroxidas 84.6 1 2.2E-05 32.7 2.8 30 57-86 47-78 (183)
254 TIGR03452 mycothione_red mycot 84.5 7.6 0.00017 32.2 8.3 81 41-124 171-269 (452)
255 PF01266 DAO: FAD dependent ox 84.4 3.8 8.2E-05 31.9 6.3 46 73-120 152-203 (358)
256 TIGR03378 glycerol3P_GlpB glyc 84.4 5.4 0.00012 33.1 7.2 48 72-119 267-321 (419)
257 COG1148 HdrA Heterodisulfide r 84.4 0.51 1.1E-05 39.7 1.3 21 144-164 124-144 (622)
258 cd03056 GST_N_4 GST_N family, 84.3 1.1 2.5E-05 26.5 2.6 46 2-48 15-60 (73)
259 cd03026 AhpF_NTD_C TRX-GRX-lik 84.1 0.75 1.6E-05 29.4 1.8 17 54-70 15-31 (89)
260 PTZ00056 glutathione peroxidas 83.7 1.1 2.3E-05 33.1 2.7 32 55-86 43-76 (199)
261 cd03012 TlpA_like_DipZ_like Tl 83.4 0.96 2.1E-05 30.4 2.2 33 54-86 26-60 (126)
262 PLN02927 antheraxanthin epoxid 83.3 0.76 1.6E-05 40.2 2.0 23 142-164 79-101 (668)
263 PF13454 NAD_binding_9: FAD-NA 83.1 4.5 9.7E-05 28.4 5.6 34 83-118 117-155 (156)
264 PRK14989 nitrite reductase sub 83.1 3.5 7.7E-05 37.2 6.1 48 73-122 192-247 (847)
265 cd01659 TRX_superfamily Thiore 83.1 1.2 2.7E-05 24.5 2.3 16 55-70 1-16 (69)
266 PTZ00383 malate:quinone oxidor 82.7 0.65 1.4E-05 39.2 1.3 19 145-163 46-64 (497)
267 TIGR01292 TRX_reduct thioredox 82.6 5.7 0.00012 30.3 6.5 48 75-122 183-240 (300)
268 cd03051 GST_N_GTT2_like GST_N 82.6 0.85 1.8E-05 27.1 1.5 26 55-85 1-26 (74)
269 cd03052 GST_N_GDAP1 GST_N fami 82.6 1.4 2.9E-05 26.8 2.4 46 2-48 15-60 (73)
270 TIGR00411 redox_disulf_1 small 82.5 1.2 2.6E-05 27.1 2.2 38 6-48 25-62 (82)
271 TIGR02661 MauD methylamine deh 82.4 1.3 2.8E-05 32.3 2.6 31 54-85 77-107 (189)
272 cd02953 DsbDgamma DsbD gamma f 82.4 0.51 1.1E-05 30.5 0.4 17 54-70 14-30 (104)
273 TIGR02740 TraF-like TraF-like 82.3 1.5 3.2E-05 34.1 3.1 32 54-86 169-200 (271)
274 KOG3855|consensus 81.2 0.97 2.1E-05 37.3 1.7 18 146-163 38-55 (481)
275 PRK15412 thiol:disulfide inter 81.0 1.2 2.5E-05 32.3 2.0 31 54-86 71-101 (185)
276 cd03000 PDI_a_TMX3 PDIa family 80.9 1 2.2E-05 29.1 1.5 16 55-70 19-34 (104)
277 PRK01747 mnmC bifunctional tRN 80.6 0.9 2E-05 39.6 1.5 20 145-164 261-280 (662)
278 cd03042 GST_N_Zeta GST_N famil 80.6 1.7 3.7E-05 25.8 2.3 46 2-48 15-60 (73)
279 PLN02463 lycopene beta cyclase 80.6 7.6 0.00016 32.4 6.8 48 74-123 120-172 (447)
280 PLN02412 probable glutathione 80.5 1.9 4.2E-05 30.7 3.0 33 54-86 32-66 (167)
281 PLN02697 lycopene epsilon cycl 80.0 0.98 2.1E-05 38.5 1.5 19 145-163 109-127 (529)
282 cd00340 GSH_Peroxidase Glutath 80.0 1.7 3.6E-05 30.3 2.4 31 54-86 25-58 (152)
283 TIGR03364 HpnW_proposed FAD de 79.9 5.9 0.00013 31.5 5.9 44 74-119 151-196 (365)
284 cd02999 PDI_a_ERp44_like PDIa 79.8 1.1 2.5E-05 29.0 1.4 17 54-70 21-37 (100)
285 PF13899 Thioredoxin_7: Thiore 79.8 0.75 1.6E-05 28.5 0.6 17 54-70 20-36 (82)
286 PRK00536 speE spermidine synth 79.8 1.3 2.8E-05 34.3 2.0 18 140-157 69-86 (262)
287 cd02960 AGR Anterior Gradient 79.5 0.91 2E-05 31.3 0.9 16 55-70 27-42 (130)
288 TIGR02374 nitri_red_nirB nitri 79.3 5.5 0.00012 35.7 5.9 48 74-123 188-241 (785)
289 TIGR02187 GlrX_arch Glutaredox 78.9 1.4 3E-05 32.8 1.8 17 54-70 136-152 (215)
290 cd03010 TlpA_like_DsbE TlpA-li 78.7 1.9 4.1E-05 28.8 2.3 33 53-86 27-59 (127)
291 cd03055 GST_N_Omega GST_N fami 78.6 1.5 3.3E-05 27.7 1.7 28 53-85 17-44 (89)
292 cd03059 GST_N_SspA GST_N famil 78.6 3.3 7.2E-05 24.5 3.2 43 2-48 15-57 (73)
293 cd02947 TRX_family TRX family; 78.5 2.5 5.5E-05 25.6 2.7 17 54-70 13-29 (93)
294 TIGR02032 GG-red-SF geranylger 78.3 8.7 0.00019 29.1 6.2 49 73-121 96-149 (295)
295 cd02949 TRX_NTR TRX domain, no 78.2 1.4 3.1E-05 28.1 1.5 17 54-70 16-32 (97)
296 TIGR00412 redox_disulf_2 small 78.1 2.3 5.1E-05 26.0 2.4 39 2-48 20-58 (76)
297 PLN02399 phospholipid hydroper 78.0 2.2 4.7E-05 32.5 2.7 33 54-86 102-136 (236)
298 PF01134 GIDA: Glucose inhibit 78.0 9.6 0.00021 31.3 6.5 44 73-118 100-150 (392)
299 PRK05329 anaerobic glycerol-3- 77.9 7.1 0.00015 32.4 5.8 49 72-120 263-318 (422)
300 cd03008 TryX_like_RdCVF Trypar 77.7 1.4 3.1E-05 30.9 1.5 16 55-70 29-44 (146)
301 cd02959 ERp19 Endoplasmic reti 77.4 1.1 2.3E-05 30.2 0.7 17 54-70 22-38 (117)
302 PRK10877 protein disulfide iso 77.4 1.8 3.8E-05 32.8 2.0 20 51-70 107-126 (232)
303 cd02997 PDI_a_PDIR PDIa family 77.1 1.6 3.4E-05 27.8 1.5 17 54-70 20-36 (104)
304 PF06110 DUF953: Eukaryotic pr 77.0 2.1 4.6E-05 29.0 2.1 40 25-71 6-46 (119)
305 TIGR01790 carotene-cycl lycope 76.7 8.6 0.00019 30.9 6.0 47 73-120 90-141 (388)
306 PF13417 GST_N_3: Glutathione 76.4 1.6 3.5E-05 26.5 1.3 43 2-48 13-55 (75)
307 PLN02985 squalene monooxygenas 76.3 1.4 3E-05 37.4 1.3 20 144-163 43-62 (514)
308 PRK06847 hypothetical protein; 76.2 10 0.00022 30.2 6.3 48 73-122 112-165 (375)
309 PRK13984 putative oxidoreducta 76.2 1.6 3.5E-05 37.6 1.7 21 143-163 282-302 (604)
310 cd02952 TRP14_like Human TRX-r 76.2 1.8 3.9E-05 29.3 1.6 18 54-71 24-48 (119)
311 PLN02529 lysine-specific histo 76.2 1.5 3.3E-05 38.9 1.6 20 144-163 160-179 (738)
312 cd02948 TRX_NDPK TRX domain, T 76.1 1.3 2.9E-05 28.6 1.0 17 54-70 20-36 (102)
313 cd02954 DIM1 Dim1 family; Dim1 75.5 1.5 3.2E-05 29.5 1.0 17 54-70 17-33 (114)
314 cd03057 GST_N_Beta GST_N famil 75.5 2.7 5.9E-05 25.4 2.2 44 2-46 14-57 (77)
315 PTZ00153 lipoamide dehydrogena 75.4 12 0.00026 32.9 6.8 83 42-124 315-431 (659)
316 cd02967 mauD Methylamine utili 75.0 2.4 5.1E-05 27.6 2.0 18 53-70 23-40 (114)
317 PLN02612 phytoene desaturase 74.9 2 4.4E-05 36.8 2.0 21 143-163 92-112 (567)
318 PLN02464 glycerol-3-phosphate 74.8 1.6 3.4E-05 38.0 1.3 20 144-163 71-90 (627)
319 cd02970 PRX_like2 Peroxiredoxi 74.8 2.6 5.6E-05 28.7 2.2 33 54-86 26-61 (149)
320 cd03039 GST_N_Sigma_like GST_N 74.4 3 6.6E-05 24.8 2.2 44 2-48 15-58 (72)
321 cd03076 GST_N_Pi GST_N family, 74.4 3.8 8.3E-05 24.6 2.7 43 2-48 16-58 (73)
322 cd02963 TRX_DnaJ TRX domain, D 74.2 3.7 8.1E-05 27.0 2.8 17 54-70 27-43 (111)
323 TIGR01372 soxA sarcosine oxida 73.9 1.9 4.1E-05 39.5 1.6 20 144-163 163-182 (985)
324 PF00578 AhpC-TSA: AhpC/TSA fa 73.6 2.6 5.7E-05 27.7 1.9 33 54-86 28-63 (124)
325 PRK08401 L-aspartate oxidase; 73.2 16 0.00035 30.5 6.9 48 73-122 125-177 (466)
326 PRK06834 hypothetical protein; 73.2 13 0.00028 31.3 6.3 48 74-123 106-159 (488)
327 cd02993 PDI_a_APS_reductase PD 72.9 2.3 4.9E-05 27.9 1.4 18 54-71 24-41 (109)
328 cd03018 PRX_AhpE_like Peroxire 72.5 3.7 8E-05 28.1 2.5 28 59-86 37-66 (149)
329 cd02994 PDI_a_TMX PDIa family, 72.4 2.3 5E-05 27.1 1.4 16 55-70 20-35 (101)
330 PF13192 Thioredoxin_3: Thiore 71.9 1.3 2.9E-05 27.1 0.1 37 4-48 22-58 (76)
331 PRK09381 trxA thioredoxin; Pro 71.8 2.5 5.4E-05 27.4 1.5 17 54-70 24-40 (109)
332 PLN02661 Putative thiazole syn 71.3 2.2 4.8E-05 34.5 1.3 19 145-163 93-111 (357)
333 TIGR03329 Phn_aa_oxid putative 71.3 11 0.00024 31.3 5.5 46 72-119 187-236 (460)
334 PHA02278 thioredoxin-like prot 71.1 2.2 4.7E-05 28.0 1.0 17 54-70 17-33 (103)
335 cd02998 PDI_a_ERp38 PDIa famil 70.9 2.9 6.4E-05 26.5 1.6 17 54-70 21-37 (105)
336 PLN02328 lysine-specific histo 70.9 2.6 5.7E-05 37.8 1.8 20 144-163 238-257 (808)
337 PF13409 GST_N_2: Glutathione 70.7 1.3 2.7E-05 26.7 -0.2 46 3-48 9-55 (70)
338 cd03003 PDI_a_ERdj5_N PDIa fam 70.7 2.8 6E-05 26.8 1.5 17 54-70 21-37 (101)
339 cd02961 PDI_a_family Protein D 70.6 2.8 6.1E-05 26.0 1.5 17 54-70 18-34 (101)
340 PLN03000 amine oxidase 70.6 2.4 5.2E-05 38.3 1.4 20 144-163 184-203 (881)
341 cd03005 PDI_a_ERp46 PDIa famil 70.5 2.8 6.1E-05 26.5 1.5 17 54-70 19-35 (102)
342 PF06953 ArsD: Arsenical resis 70.2 5.1 0.00011 27.3 2.7 41 7-48 37-81 (123)
343 PRK11657 dsbG disulfide isomer 70.1 3.8 8.3E-05 31.4 2.3 20 51-70 117-136 (251)
344 cd03002 PDI_a_MPD1_like PDI fa 70.0 2.9 6.3E-05 26.9 1.5 17 54-70 21-37 (109)
345 cd02950 TxlA TRX-like protein 70.0 2.6 5.7E-05 29.2 1.3 17 54-70 23-39 (142)
346 TIGR02028 ChlP geranylgeranyl 69.8 13 0.00028 30.3 5.4 51 73-123 98-163 (398)
347 cd02986 DLP Dim1 family, Dim1- 69.6 2.9 6.4E-05 28.1 1.4 13 58-70 21-33 (114)
348 TIGR01126 pdi_dom protein disu 69.5 3.2 6.9E-05 26.2 1.5 17 54-70 16-32 (102)
349 cd05126 Mth938 Mth938 domain. 69.4 15 0.00033 24.7 4.9 60 96-157 8-71 (117)
350 cd02996 PDI_a_ERp44 PDIa famil 69.3 3.1 6.7E-05 27.0 1.5 16 55-70 22-37 (108)
351 COG0446 HcaD Uncharacterized N 69.2 16 0.00035 29.0 6.0 68 52-121 159-238 (415)
352 TIGR02352 thiamin_ThiO glycine 69.1 13 0.00029 28.8 5.3 46 73-120 142-193 (337)
353 COG1148 HdrA Heterodisulfide r 69.0 1.5 3.2E-05 37.1 -0.2 43 79-121 426-477 (622)
354 cd02985 TRX_CDSP32 TRX family, 69.0 3.1 6.8E-05 26.9 1.5 17 54-70 18-34 (103)
355 PF14595 Thioredoxin_9: Thiore 68.9 1.6 3.6E-05 29.9 0.1 17 54-70 44-60 (129)
356 cd02966 TlpA_like_family TlpA- 68.8 4.3 9.2E-05 25.7 2.1 18 53-70 21-38 (116)
357 PLN02487 zeta-carotene desatur 68.7 3.1 6.7E-05 35.8 1.7 19 145-163 76-94 (569)
358 cd02984 TRX_PICOT TRX domain, 68.7 3.2 6.8E-05 26.1 1.4 17 54-70 17-33 (97)
359 PTZ00051 thioredoxin; Provisio 68.5 3.4 7.4E-05 26.0 1.6 17 54-70 21-37 (98)
360 PF00085 Thioredoxin: Thioredo 68.5 2.6 5.6E-05 26.6 1.0 17 54-70 20-36 (103)
361 cd03020 DsbA_DsbC_DsbG DsbA fa 68.5 4.4 9.5E-05 29.5 2.3 20 51-70 77-96 (197)
362 cd03006 PDI_a_EFP1_N PDIa fami 68.4 3 6.6E-05 27.8 1.3 17 54-70 32-48 (113)
363 cd03048 GST_N_Ure2p_like GST_N 68.2 5.3 0.00012 24.4 2.3 44 2-46 15-58 (81)
364 cd03061 GST_N_CLIC GST_N famil 68.2 2.3 5E-05 27.4 0.6 42 3-48 29-70 (91)
365 PRK07190 hypothetical protein; 67.9 15 0.00032 31.0 5.6 46 74-121 115-166 (487)
366 TIGR00385 dsbE periplasmic pro 67.4 4.7 0.0001 28.8 2.2 31 54-86 66-96 (173)
367 TIGR00275 flavoprotein, HI0933 67.4 22 0.00048 29.0 6.4 46 73-120 110-160 (400)
368 PF05768 DUF836: Glutaredoxin- 66.8 3.1 6.8E-05 25.8 1.1 22 54-80 1-22 (81)
369 COG4545 Glutaredoxin-related p 66.8 3.9 8.4E-05 25.4 1.4 25 56-85 5-29 (85)
370 cd03053 GST_N_Phi GST_N family 66.7 6.3 0.00014 23.5 2.4 46 2-48 16-61 (76)
371 TIGR01068 thioredoxin thioredo 66.7 4 8.7E-05 25.5 1.6 17 54-70 17-33 (101)
372 PF05678 VQ: VQ motif; InterP 66.5 7.1 0.00015 19.9 2.1 25 13-41 5-29 (31)
373 PRK08773 2-octaprenyl-3-methyl 66.5 19 0.00042 28.9 5.9 47 74-122 119-171 (392)
374 cd03047 GST_N_2 GST_N family, 66.5 6.7 0.00015 23.4 2.5 46 2-48 15-60 (73)
375 KOG0024|consensus 66.4 7.8 0.00017 31.1 3.4 16 144-159 170-185 (354)
376 cd02956 ybbN ybbN protein fami 66.3 4 8.8E-05 25.6 1.5 17 54-70 15-31 (96)
377 PRK03147 thiol-disulfide oxido 66.1 5.2 0.00011 28.1 2.2 17 54-70 64-80 (173)
378 PRK00711 D-amino acid dehydrog 65.9 18 0.0004 29.2 5.7 44 74-119 207-256 (416)
379 TIGR00014 arsC arsenate reduct 65.9 4.4 9.6E-05 27.0 1.7 27 55-86 1-27 (114)
380 PRK07333 2-octaprenyl-6-methox 65.8 20 0.00044 28.8 5.9 49 73-123 116-170 (403)
381 cd03015 PRX_Typ2cys Peroxiredo 65.2 7 0.00015 27.8 2.8 27 60-86 39-67 (173)
382 COG0686 Ald Alanine dehydrogen 65.2 3.6 7.8E-05 32.8 1.3 58 105-162 113-186 (371)
383 cd03054 GST_N_Metaxin GST_N fa 64.6 7.3 0.00016 23.1 2.4 38 2-50 22-59 (72)
384 PRK12770 putative glutamate sy 64.4 20 0.00043 28.6 5.5 48 75-122 217-288 (352)
385 cd03017 PRX_BCP Peroxiredoxin 64.3 7.4 0.00016 26.2 2.7 27 60-86 33-61 (140)
386 cd03034 ArsC_ArsC Arsenate Red 64.3 4.9 0.00011 26.7 1.7 27 55-86 1-27 (112)
387 PRK06184 hypothetical protein; 63.7 22 0.00048 29.8 5.9 49 74-122 115-170 (502)
388 PF04820 Trp_halogenase: Trypt 63.6 25 0.00054 29.3 6.1 49 74-124 160-215 (454)
389 cd02995 PDI_a_PDI_a'_C PDIa fa 63.4 4.5 9.8E-05 25.6 1.4 17 54-70 21-37 (104)
390 KOG0907|consensus 63.3 4.8 0.0001 26.6 1.5 14 57-70 27-40 (106)
391 COG0493 GltD NADPH-dependent g 63.2 3.6 7.8E-05 34.4 1.1 21 144-164 123-143 (457)
392 cd03004 PDI_a_ERdj5_C PDIa fam 62.9 4.8 0.0001 25.8 1.4 17 54-70 22-38 (104)
393 PRK11728 hydroxyglutarate oxid 62.8 22 0.00049 28.6 5.6 46 73-120 154-204 (393)
394 TIGR01377 soxA_mon sarcosine o 62.8 21 0.00047 28.3 5.4 45 73-119 150-199 (380)
395 PF13905 Thioredoxin_8: Thiore 62.4 5.7 0.00012 24.9 1.7 32 55-86 5-39 (95)
396 PF00890 FAD_binding_2: FAD bi 62.2 38 0.00083 27.4 6.9 49 73-121 146-204 (417)
397 PRK05714 2-octaprenyl-3-methyl 61.5 27 0.0006 28.2 5.9 47 74-122 118-170 (405)
398 cd02971 PRX_family Peroxiredox 61.3 9.5 0.00021 25.6 2.8 27 60-86 32-60 (140)
399 cd03009 TryX_like_TryX_NRX Try 61.2 5.7 0.00012 26.6 1.6 17 54-70 21-37 (131)
400 PF02826 2-Hacid_dh_C: D-isome 61.1 6.5 0.00014 28.2 2.0 21 143-163 35-55 (178)
401 cd03046 GST_N_GTT1_like GST_N 60.8 7.8 0.00017 23.0 2.1 45 3-48 15-59 (76)
402 cd02964 TryX_like_family Trypa 60.7 5.8 0.00013 26.8 1.6 17 54-70 20-36 (132)
403 KOG3851|consensus 60.6 3.7 7.9E-05 33.1 0.6 19 145-163 40-58 (446)
404 TIGR01789 lycopene_cycl lycope 60.5 38 0.00082 27.4 6.5 41 79-121 97-139 (370)
405 cd03043 GST_N_1 GST_N family, 60.5 11 0.00023 22.7 2.6 45 2-48 16-60 (73)
406 cd00401 AdoHcyase S-adenosyl-L 60.4 5.9 0.00013 32.7 1.8 21 143-163 201-221 (413)
407 cd03050 GST_N_Theta GST_N fami 60.3 9.8 0.00021 22.8 2.4 45 3-48 16-60 (76)
408 cd02968 SCO SCO (an acronym fo 60.2 8.8 0.00019 25.9 2.5 17 54-70 25-42 (142)
409 cd03001 PDI_a_P5 PDIa family, 60.2 5.8 0.00013 25.1 1.4 17 54-70 21-37 (103)
410 KOG2820|consensus 60.1 18 0.00039 29.3 4.4 47 73-119 158-211 (399)
411 cd03038 GST_N_etherase_LigE GS 59.9 6.5 0.00014 24.2 1.6 43 2-46 22-64 (84)
412 PF07315 DUF1462: Protein of u 59.5 23 0.0005 22.8 4.0 43 9-51 36-79 (93)
413 PRK06481 fumarate reductase fl 59.4 5.1 0.00011 33.8 1.3 18 145-162 62-79 (506)
414 PRK11259 solA N-methyltryptoph 57.9 30 0.00065 27.5 5.5 44 74-119 155-203 (376)
415 PLN02602 lactate dehydrogenase 57.5 6.9 0.00015 31.6 1.7 20 144-163 37-56 (350)
416 TIGR03137 AhpC peroxiredoxin. 56.8 12 0.00026 27.1 2.8 27 60-86 41-69 (187)
417 PRK10853 putative reductase; P 56.8 6.3 0.00014 26.6 1.2 27 55-86 2-28 (118)
418 KOG2415|consensus 56.7 6.4 0.00014 32.9 1.4 19 145-163 77-95 (621)
419 PRK10026 arsenate reductase; P 56.6 8.4 0.00018 26.9 1.8 28 54-86 3-30 (141)
420 PRK07878 molybdopterin biosynt 56.4 6.6 0.00014 32.1 1.5 20 145-164 43-62 (392)
421 PRK07573 sdhA succinate dehydr 56.4 6.4 0.00014 34.4 1.5 19 145-163 36-54 (640)
422 PLN02697 lycopene epsilon cycl 55.8 58 0.0013 27.9 7.0 45 74-120 198-248 (529)
423 cd03011 TlpA_like_ScsD_MtbDsbE 55.3 8.6 0.00019 25.2 1.7 17 54-70 23-39 (123)
424 cd03044 GST_N_EF1Bgamma GST_N 55.2 8.9 0.00019 23.0 1.6 43 2-46 15-57 (75)
425 COG3486 IucD Lysine/ornithine 55.1 22 0.00049 29.4 4.2 24 102-125 322-345 (436)
426 cd02992 PDI_a_QSOX PDIa family 55.0 6 0.00013 26.2 0.9 17 54-70 22-38 (114)
427 COG1393 ArsC Arsenate reductas 55.0 7.4 0.00016 26.2 1.3 28 54-86 2-29 (117)
428 KOG0910|consensus 54.9 24 0.00051 25.0 3.8 18 53-70 63-80 (150)
429 PRK13190 putative peroxiredoxi 54.7 14 0.0003 27.2 2.8 29 58-86 35-65 (202)
430 TIGR00136 gidA glucose-inhibit 54.2 43 0.00094 29.3 6.0 45 74-120 102-154 (617)
431 PRK05600 thiamine biosynthesis 54.0 7.7 0.00017 31.6 1.5 19 145-163 42-60 (370)
432 PRK07608 ubiquinone biosynthes 53.9 44 0.00094 26.7 5.8 47 74-122 117-169 (388)
433 cd03016 PRX_1cys Peroxiredoxin 53.9 14 0.0003 27.2 2.7 29 58-86 33-63 (203)
434 cd02969 PRX_like1 Peroxiredoxi 53.7 14 0.00029 26.1 2.6 33 54-86 28-62 (171)
435 KOG0868|consensus 53.7 9.7 0.00021 27.9 1.8 50 2-51 20-69 (217)
436 COG0421 SpeE Spermidine syntha 53.3 9.1 0.0002 30.0 1.7 16 142-157 75-90 (282)
437 PLN00410 U5 snRNP protein, DIM 52.9 7.7 0.00017 27.2 1.1 16 55-70 27-42 (142)
438 TIGR02485 CobZ_N-term precorri 52.6 52 0.0011 27.0 6.2 47 73-119 128-182 (432)
439 TIGR01616 nitro_assoc nitrogen 52.5 8.9 0.00019 26.2 1.4 28 54-86 2-29 (126)
440 KOG3029|consensus 52.4 13 0.00029 29.2 2.4 28 53-85 89-116 (370)
441 cd05191 NAD_bind_amino_acid_DH 52.1 13 0.00029 23.1 2.1 21 143-163 22-42 (86)
442 COG0526 TrxA Thiol-disulfide i 52.1 10 0.00022 23.5 1.6 12 59-70 40-51 (127)
443 cd05213 NAD_bind_Glutamyl_tRNA 51.8 10 0.00022 30.0 1.8 21 143-163 177-197 (311)
444 PLN02785 Protein HOTHEAD 51.7 8.9 0.00019 33.2 1.6 20 145-164 56-75 (587)
445 PRK07411 hypothetical protein; 51.7 8.6 0.00019 31.5 1.4 20 145-164 39-58 (390)
446 PRK09126 hypothetical protein; 51.5 50 0.0011 26.4 5.8 44 79-124 122-171 (392)
447 PF01494 FAD_binding_3: FAD bi 51.5 76 0.0016 24.4 6.8 50 73-122 116-174 (356)
448 KOG2893|consensus 51.3 5.4 0.00012 30.5 0.2 12 59-70 9-20 (341)
449 TIGR00936 ahcY adenosylhomocys 51.1 11 0.00024 31.1 1.9 21 143-163 194-214 (406)
450 TIGR02853 spore_dpaA dipicolin 51.0 9.1 0.0002 29.9 1.4 20 144-163 151-170 (287)
451 PRK14982 acyl-ACP reductase; P 50.9 9.1 0.0002 30.8 1.4 20 144-163 155-175 (340)
452 PRK10157 putative oxidoreducta 50.9 55 0.0012 26.9 6.1 46 74-121 114-165 (428)
453 cd01080 NAD_bind_m-THF_DH_Cycl 50.7 12 0.00026 26.9 1.9 21 143-163 43-64 (168)
454 TIGR03197 MnmC_Cterm tRNA U-34 50.3 37 0.0008 27.2 4.9 44 74-119 141-189 (381)
455 PLN00128 Succinate dehydrogena 50.3 9.5 0.00021 33.3 1.5 19 145-163 51-69 (635)
456 PLN02657 3,8-divinyl protochlo 50.0 19 0.00041 29.3 3.2 29 135-163 51-80 (390)
457 cd02989 Phd_like_TxnDC9 Phosdu 49.8 12 0.00026 24.7 1.7 17 54-70 25-41 (113)
458 TIGR01408 Ube1 ubiquitin-activ 49.8 8.7 0.00019 35.5 1.3 20 145-164 420-439 (1008)
459 PRK12409 D-amino acid dehydrog 49.7 58 0.0013 26.3 6.0 47 73-119 202-257 (410)
460 PF02798 GST_N: Glutathione S- 49.7 21 0.00045 21.6 2.6 46 2-48 15-62 (76)
461 PRK10996 thioredoxin 2; Provis 49.5 8.5 0.00018 26.5 0.9 17 54-70 55-71 (139)
462 PLN02976 amine oxidase 49.5 10 0.00022 36.6 1.7 20 144-163 693-712 (1713)
463 PRK08020 ubiF 2-octaprenyl-3-m 49.4 57 0.0012 26.1 5.9 46 75-122 119-171 (391)
464 cd02962 TMX2 TMX2 family; comp 49.3 9.8 0.00021 26.8 1.2 16 55-70 51-66 (152)
465 cd02957 Phd_like Phosducin (Ph 48.9 13 0.00027 24.4 1.7 17 54-70 27-43 (113)
466 TIGR02023 BchP-ChlP geranylger 48.9 64 0.0014 26.0 6.1 49 74-122 98-157 (388)
467 TIGR00518 alaDH alanine dehydr 48.8 13 0.00028 30.2 2.0 21 143-163 166-186 (370)
468 PRK10015 oxidoreductase; Provi 48.4 61 0.0013 26.7 6.0 47 74-121 114-165 (429)
469 PRK07573 sdhA succinate dehydr 48.2 76 0.0016 27.8 6.7 44 76-119 178-231 (640)
470 PRK08762 molybdopterin biosynt 48.0 11 0.00023 30.7 1.4 20 144-163 135-154 (376)
471 PTZ00075 Adenosylhomocysteinas 48.0 11 0.00024 31.7 1.6 21 143-163 253-273 (476)
472 PF00070 Pyr_redox: Pyridine n 47.8 41 0.00089 20.3 3.8 37 53-89 23-61 (80)
473 PRK08125 bifunctional UDP-gluc 47.8 25 0.00053 30.8 3.7 20 144-163 315-335 (660)
474 PRK11730 fadB multifunctional 47.6 9.8 0.00021 33.7 1.2 19 145-163 314-332 (715)
475 PRK08274 tricarballylate dehyd 47.5 73 0.0016 26.4 6.3 46 74-119 137-191 (466)
476 cd02965 HyaE HyaE family; HyaE 47.4 13 0.00028 24.8 1.6 21 50-70 26-48 (111)
477 PRK08244 hypothetical protein; 47.4 68 0.0015 26.8 6.2 49 74-122 106-161 (493)
478 PRK10606 btuE putative glutath 47.4 21 0.00045 26.0 2.8 33 52-86 26-61 (183)
479 PRK08605 D-lactate dehydrogena 47.3 14 0.0003 29.5 1.9 20 144-163 146-165 (332)
480 PRK05476 S-adenosyl-L-homocyst 47.1 13 0.00029 30.9 1.8 21 143-163 211-231 (425)
481 PF11312 DUF3115: Protein of u 47.1 15 0.00032 29.3 2.0 16 143-159 86-101 (315)
482 TIGR01813 flavo_cyto_c flavocy 46.9 81 0.0018 25.8 6.5 49 73-121 135-193 (439)
483 KOG2501|consensus 46.5 7.6 0.00017 27.7 0.3 26 58-83 40-67 (157)
484 TIGR02437 FadB fatty oxidation 46.5 11 0.00023 33.6 1.3 19 145-163 314-332 (714)
485 PRK09424 pntA NAD(P) transhydr 46.2 15 0.00033 31.3 2.1 20 142-161 163-182 (509)
486 PF13728 TraF: F plasmid trans 46.1 21 0.00046 26.7 2.7 31 55-86 124-154 (215)
487 TIGR02440 FadJ fatty oxidation 46.1 11 0.00024 33.3 1.3 19 145-163 305-323 (699)
488 PRK05192 tRNA uridine 5-carbox 46.0 73 0.0016 28.0 6.2 44 74-119 106-156 (618)
489 KOG1238|consensus 45.9 12 0.00027 32.5 1.5 20 145-164 58-77 (623)
490 KOG2012|consensus 45.8 12 0.00027 33.7 1.5 19 145-163 431-449 (1013)
491 KOG2665|consensus 45.7 8.3 0.00018 31.1 0.5 19 145-163 49-67 (453)
492 TIGR01988 Ubi-OHases Ubiquinon 45.6 68 0.0015 25.4 5.7 46 74-121 112-164 (385)
493 TIGR01984 UbiH 2-polyprenyl-6- 45.5 62 0.0013 25.8 5.5 46 74-121 111-163 (382)
494 PRK12480 D-lactate dehydrogena 45.5 13 0.00028 29.7 1.5 20 144-163 146-165 (330)
495 PRK09437 bcp thioredoxin-depen 45.3 24 0.00051 24.3 2.7 31 56-86 35-68 (154)
496 PLN02494 adenosylhomocysteinas 45.1 16 0.00034 30.9 2.0 20 144-163 254-273 (477)
497 PRK06183 mhpA 3-(3-hydroxyphen 44.9 75 0.0016 27.0 6.1 49 74-122 119-176 (538)
498 PRK06481 fumarate reductase fl 44.8 80 0.0017 26.7 6.3 47 73-119 195-250 (506)
499 PRK06175 L-aspartate oxidase; 44.8 86 0.0019 25.9 6.3 46 75-120 135-189 (433)
500 PTZ00443 Thioredoxin domain-co 44.8 12 0.00027 28.2 1.3 17 54-70 55-71 (224)
No 1
>KOG0405|consensus
Probab=99.70 E-value=1.6e-17 Score=129.32 Aligned_cols=91 Identities=42% Similarity=0.757 Sum_probs=81.6
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCCcEEEE
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLV 150 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~~vvVi 150 (164)
|++.|.+.+|+++.|++.++++.++++ ++....+++.+++||||++|.+|+|||.+.-.++|.++++++.|++++||
T Consensus 116 Y~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gidSDgff~Lee~Pkr~vvv 195 (478)
T KOG0405|consen 116 YKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGIDSDGFFDLEEQPKRVVVV 195 (478)
T ss_pred HHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhccccccccchhhcCceEEEE
Confidence 567778889999999999999887776 55445689999999999999999999988888999999999999999999
Q ss_pred CCcHHHHHhhcccC
Q psy7674 151 GASYIALECAGCDK 164 (164)
Q Consensus 151 GgG~~g~E~A~~l~ 164 (164)
|+|||++|+|+.|+
T Consensus 196 GaGYIavE~Agi~~ 209 (478)
T KOG0405|consen 196 GAGYIAVEFAGIFA 209 (478)
T ss_pred ccceEEEEhhhHHh
Confidence 99999999998764
No 2
>KOG4716|consensus
Probab=99.70 E-value=2.5e-17 Score=127.98 Aligned_cols=94 Identities=56% Similarity=0.966 Sum_probs=84.4
Q ss_pred chhhHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc-cceechhhhccCcCCCCc
Q psy7674 71 ENNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFSLNKDPGK 146 (164)
Q Consensus 71 ~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~~~~~~~~~~~~~ 146 (164)
+|.++-+|+++.|+++.+.++++|++++.. .+.+..++++.++||||.||+.|.|||. ++.+|+||++.+...|.+
T Consensus 121 NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp~IpG~~Ey~ITSDDlFsl~~~PGk 200 (503)
T KOG4716|consen 121 NWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYPDIPGAKEYGITSDDLFSLPYEPGK 200 (503)
T ss_pred cceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCCCCCCCceeeeecccccccccCCCCc
Confidence 455666788889999999999999998877 4445679999999999999999999998 899999999999999999
Q ss_pred EEEECCcHHHHHhhcccC
Q psy7674 147 VLLVGASYIALECAGCDK 164 (164)
Q Consensus 147 vvViGgG~~g~E~A~~l~ 164 (164)
.+|||+||+|+|+|++|+
T Consensus 201 TLvVGa~YVaLECAgFL~ 218 (503)
T KOG4716|consen 201 TLVVGAGYVALECAGFLK 218 (503)
T ss_pred eEEEccceeeeehhhhHh
Confidence 999999999999999884
No 3
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.69 E-value=1.1e-16 Score=131.00 Aligned_cols=91 Identities=38% Similarity=0.575 Sum_probs=79.5
Q ss_pred hhHHHHhhcCceEEeeEEEEeeCcEEEeCC-eeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEE
Q psy7674 73 NYEKELEKNKIDYFNAKAVFVDKHRVKFAG-EERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLL 149 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~-~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvV 149 (164)
.++.++++.+|+++.|++.+++++++.+++ +.+.+.++++||||||+|+.|++++. ..++++++.+.+.+.|++++|
T Consensus 99 ~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvI 178 (454)
T COG1249 99 GVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVI 178 (454)
T ss_pred hHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEechhhcccccCCCEEEE
Confidence 456777888999999999999999999943 23689999999999999999998876 557888887777799999999
Q ss_pred ECCcHHHHHhhccc
Q psy7674 150 VGASYIALECAGCD 163 (164)
Q Consensus 150 iGgG~~g~E~A~~l 163 (164)
||||++|+|+|..|
T Consensus 179 iGgG~IGlE~a~~~ 192 (454)
T COG1249 179 VGGGYIGLEFASVF 192 (454)
T ss_pred ECCCHHHHHHHHHH
Confidence 99999999999876
No 4
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.66 E-value=5.8e-16 Score=128.37 Aligned_cols=91 Identities=60% Similarity=0.944 Sum_probs=79.3
Q ss_pred hhHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc-cceechhhhccCcCCCCcEE
Q psy7674 73 NYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFSLNKDPGKVL 148 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~~~~~~~~~~~~~vv 148 (164)
.++.++++.||+++.|++.+++++++.+ ++....+.||++|||||++|+.|++||. +...++++++.+...|++++
T Consensus 105 ~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ipG~~~~~~~~~~~~~~~~~~~~vv 184 (484)
T TIGR01438 105 GYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIPGAKELCITSDDLFSLPYCPGKTL 184 (484)
T ss_pred HHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCCCccceeecHHHhhcccccCCCEE
Confidence 4556788899999999999999998887 2323479999999999999999999997 66678899988888889999
Q ss_pred EECCcHHHHHhhccc
Q psy7674 149 LVGASYIALECAGCD 163 (164)
Q Consensus 149 ViGgG~~g~E~A~~l 163 (164)
|||||++|+|+|..|
T Consensus 185 IIGgG~iG~E~A~~l 199 (484)
T TIGR01438 185 VVGASYVALECAGFL 199 (484)
T ss_pred EECCCHHHHHHHHHH
Confidence 999999999999876
No 5
>PLN02546 glutathione reductase
Probab=99.64 E-value=7.9e-16 Score=129.25 Aligned_cols=88 Identities=41% Similarity=0.694 Sum_probs=78.8
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCCcEEEECCc
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGAS 153 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~~vvViGgG 153 (164)
+..++++.||+++.|++++++++++.+++ +.+.||++|||||++|..|++||.++++++++++.+...+++++|||||
T Consensus 184 ~~~~l~~~gV~~i~G~a~~vd~~~V~v~G--~~~~~D~LVIATGs~p~~P~IpG~~~v~~~~~~l~~~~~~k~V~VIGgG 261 (558)
T PLN02546 184 YKNILKNAGVTLIEGRGKIVDPHTVDVDG--KLYTARNILIAVGGRPFIPDIPGIEHAIDSDAALDLPSKPEKIAIVGGG 261 (558)
T ss_pred HHHHHHhCCcEEEEeEEEEccCCEEEECC--EEEECCEEEEeCCCCCCCCCCCChhhccCHHHHHhccccCCeEEEECCC
Confidence 44567788999999999999999888876 6799999999999999999999977788899988887788999999999
Q ss_pred HHHHHhhccc
Q psy7674 154 YIALECAGCD 163 (164)
Q Consensus 154 ~~g~E~A~~l 163 (164)
++|+|+|..|
T Consensus 262 ~iGvE~A~~L 271 (558)
T PLN02546 262 YIALEFAGIF 271 (558)
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 6
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.61 E-value=2.5e-15 Score=124.58 Aligned_cols=91 Identities=29% Similarity=0.511 Sum_probs=76.9
Q ss_pred hhHHHHhh-cCceEEeeEEEEeeCcEEEeCC----e---eEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCC
Q psy7674 73 NYEKELEK-NKIDYFNAKAVFVDKHRVKFAG----E---ERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDP 144 (164)
Q Consensus 73 ~~~~~l~~-~gv~~~~~~~~~~~~~~v~v~~----~---~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~ 144 (164)
.+.+++++ .|++++.|++.+++++++.++. . .+.+.||++||||||+|+.|++||.+.++++++++.+...|
T Consensus 108 ~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs~p~~p~i~G~~~~~~~~~~~~~~~~~ 187 (486)
T TIGR01423 108 SYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSWPQMLGIPGIEHCISSNEAFYLDEPP 187 (486)
T ss_pred HHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCCCCCCCCCCChhheechhhhhccccCC
Confidence 34556777 4999999999999999888731 1 24799999999999999999999976678888888887788
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
++++|||||++|+|+|..|
T Consensus 188 ~~vvIIGgG~iG~E~A~~~ 206 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIF 206 (486)
T ss_pred CeEEEECCCHHHHHHHHHH
Confidence 9999999999999999654
No 7
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.61 E-value=4.5e-15 Score=122.09 Aligned_cols=88 Identities=47% Similarity=0.821 Sum_probs=77.0
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCC-CCCCccceechhhhccCcCCCCcEEEECC
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP-DIPGAHLGITSDDLFSLNKDPGKVLLVGA 152 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p-~i~g~~~v~~~~~~~~~~~~~~~vvViGg 152 (164)
+...+++.||+++.+++.+.+++++.+++ ..+.||++|+|||++|+.| ++||.+...++++++.+...|++++||||
T Consensus 97 ~~~~l~~~gv~~~~g~~~~~~~~~v~v~~--~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~~~~~~~~~~~vvIIGg 174 (450)
T TIGR01421 97 YQKNLEKNKVDVIFGHARFTKDGTVEVNG--RDYTAPHILIATGGKPSFPENIPGAELGTDSDGFFALEELPKRVVIVGA 174 (450)
T ss_pred HHHHHHhCCCEEEEEEEEEccCCEEEECC--EEEEeCEEEEecCCCCCCCCCCCCCceeEcHHHhhCccccCCeEEEECC
Confidence 45667788999999999888888888776 5799999999999999999 89987555788888888888999999999
Q ss_pred cHHHHHhhccc
Q psy7674 153 SYIALECAGCD 163 (164)
Q Consensus 153 G~~g~E~A~~l 163 (164)
|++|+|+|..|
T Consensus 175 G~iG~E~A~~l 185 (450)
T TIGR01421 175 GYIAVELAGVL 185 (450)
T ss_pred CHHHHHHHHHH
Confidence 99999999876
No 8
>PRK06116 glutathione reductase; Validated
Probab=99.60 E-value=5e-15 Score=121.70 Aligned_cols=88 Identities=49% Similarity=0.815 Sum_probs=77.8
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCCcEEEECCc
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGAS 153 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~~vvViGgG 153 (164)
+++.+++.||+++.+++++++++++++++ ..+.||+||+|||++|+.|++||.+.+.++++++.+...+++++|||||
T Consensus 99 ~~~~l~~~gv~~~~g~~~~v~~~~v~~~g--~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG 176 (450)
T PRK06116 99 YRNGLENNGVDLIEGFARFVDAHTVEVNG--ERYTADHILIATGGRPSIPDIPGAEYGITSDGFFALEELPKRVAVVGAG 176 (450)
T ss_pred HHHHHHhCCCEEEEEEEEEccCCEEEECC--EEEEeCEEEEecCCCCCCCCCCCcceeEchhHhhCccccCCeEEEECCC
Confidence 34557778999999999999998888865 6799999999999999999999976778888888887788999999999
Q ss_pred HHHHHhhccc
Q psy7674 154 YIALECAGCD 163 (164)
Q Consensus 154 ~~g~E~A~~l 163 (164)
++|+|+|..|
T Consensus 177 ~~g~E~A~~l 186 (450)
T PRK06116 177 YIAVEFAGVL 186 (450)
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 9
>PRK07846 mycothione reductase; Reviewed
Probab=99.60 E-value=3.3e-15 Score=122.93 Aligned_cols=84 Identities=27% Similarity=0.460 Sum_probs=74.6
Q ss_pred HhhcCceEEeeEEEEeeCcEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEEECCcH
Q psy7674 78 LEKNKIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLLVGASY 154 (164)
Q Consensus 78 l~~~gv~~~~~~~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvViGgG~ 154 (164)
+++.|++++.|++.+++++++++ ++ +.+.||++|||||++|+.|++||. ..+.+.++++.+...|++++|||||+
T Consensus 99 ~~~~~v~~~~g~a~~~~~~~V~v~~g--~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~vvIIGgG~ 176 (451)
T PRK07846 99 RDTPNIDVYRGHARFIGPKTLRTGDG--EEITADQVVIAAGSRPVIPPVIADSGVRYHTSDTIMRLPELPESLVIVGGGF 176 (451)
T ss_pred hhhCCcEEEEEEEEEecCCEEEECCC--CEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHHHhhhhhcCCeEEEECCCH
Confidence 67789999999999999999988 44 579999999999999999999985 34678888888877889999999999
Q ss_pred HHHHhhccc
Q psy7674 155 IALECAGCD 163 (164)
Q Consensus 155 ~g~E~A~~l 163 (164)
+|+|+|..|
T Consensus 177 iG~E~A~~l 185 (451)
T PRK07846 177 IAAEFAHVF 185 (451)
T ss_pred HHHHHHHHH
Confidence 999999876
No 10
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.60 E-value=7.1e-15 Score=121.52 Aligned_cols=89 Identities=26% Similarity=0.368 Sum_probs=74.5
Q ss_pred HHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCC-CCCCCc-cceechhhhccCcCCCCcEEE
Q psy7674 75 EKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTY-PDIPGA-HLGITSDDLFSLNKDPGKVLL 149 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~-p~i~g~-~~v~~~~~~~~~~~~~~~vvV 149 (164)
..++++.||+++.+++.+++++++.+ +++...+.||++||||||+|+. |.+++. ++++++++++.+...|++++|
T Consensus 100 ~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~~~~~~~~~~~~~~~vvI 179 (471)
T PRK06467 100 AGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDSTDALELKEVPKRLLV 179 (471)
T ss_pred HHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEEChHHhhccccCCCeEEE
Confidence 35567789999999999999888777 2322579999999999999974 446665 678888999888888899999
Q ss_pred ECCcHHHHHhhccc
Q psy7674 150 VGASYIALECAGCD 163 (164)
Q Consensus 150 iGgG~~g~E~A~~l 163 (164)
||||++|+|+|..|
T Consensus 180 iGgG~iG~E~A~~l 193 (471)
T PRK06467 180 MGGGIIGLEMGTVY 193 (471)
T ss_pred ECCCHHHHHHHHHH
Confidence 99999999999876
No 11
>PTZ00058 glutathione reductase; Provisional
Probab=99.59 E-value=5.7e-15 Score=124.11 Aligned_cols=89 Identities=29% Similarity=0.688 Sum_probs=74.7
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEe---------------------------CCeeEEEEeceEEEecCCCCCCCCCC
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKF---------------------------AGEERTVSAQNFIIAVGGRPTYPDIP 126 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---------------------------~~~~~~~~~d~liiAtGs~~~~p~i~ 126 (164)
+++.+++.||+++.|++.+.+++++.+ ..++..+.||++|||||++|+.|++|
T Consensus 141 ~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~lVIATGS~P~~P~Ip 220 (561)
T PTZ00058 141 YRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKPIFPDVK 220 (561)
T ss_pred HHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCEEEEecCCCCCCCCCC
Confidence 456678889999999999998887642 01125799999999999999999999
Q ss_pred CccceechhhhccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674 127 GAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 127 g~~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l 163 (164)
|.+.++++++++.+.. +++++|||||++|+|+|..|
T Consensus 221 G~~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l 256 (561)
T PTZ00058 221 GKEFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVV 256 (561)
T ss_pred CceeEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHH
Confidence 9766788888887765 89999999999999999876
No 12
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.59 E-value=7.4e-15 Score=120.61 Aligned_cols=91 Identities=36% Similarity=0.656 Sum_probs=76.6
Q ss_pred hhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCCcEEEECC
Q psy7674 73 NYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGA 152 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~~vvViGg 152 (164)
.++.++++.|++++.+++.+++++++.+..++..+.||++|+|||++|+.|++||.+...++++++.+...+++++||||
T Consensus 95 ~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~~l~~~~~~vvVIGg 174 (446)
T TIGR01424 95 LYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAFHLPTLPKSILILGG 174 (446)
T ss_pred HHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhhcccccCCeEEEECC
Confidence 34566788899999999999998877762112679999999999999999999987556778888887777899999999
Q ss_pred cHHHHHhhccc
Q psy7674 153 SYIALECAGCD 163 (164)
Q Consensus 153 G~~g~E~A~~l 163 (164)
|++|+|+|..|
T Consensus 175 G~~g~E~A~~l 185 (446)
T TIGR01424 175 GYIAVEFAGIW 185 (446)
T ss_pred cHHHHHHHHHH
Confidence 99999999875
No 13
>PLN02507 glutathione reductase
Probab=99.59 E-value=8.6e-15 Score=121.80 Aligned_cols=89 Identities=30% Similarity=0.551 Sum_probs=75.4
Q ss_pred HHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCCcEEEEC
Q psy7674 75 EKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVG 151 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~~vvViG 151 (164)
+.++++.+|+++.+++.+++++++.+ ++....+.||+||||||++|+.|++||.+...++++++.+...+++++|||
T Consensus 131 ~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p~ipG~~~~~~~~~~~~l~~~~k~vvVIG 210 (499)
T PLN02507 131 KRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKELAITSDEALSLEELPKRAVVLG 210 (499)
T ss_pred HHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCCCCCCccceechHHhhhhhhcCCeEEEEC
Confidence 45567789999999999999887777 442236899999999999999999998755578888888877889999999
Q ss_pred CcHHHHHhhccc
Q psy7674 152 ASYIALECAGCD 163 (164)
Q Consensus 152 gG~~g~E~A~~l 163 (164)
||++|+|+|..|
T Consensus 211 gG~ig~E~A~~l 222 (499)
T PLN02507 211 GGYIAVEFASIW 222 (499)
T ss_pred CcHHHHHHHHHH
Confidence 999999999876
No 14
>PRK06370 mercuric reductase; Validated
Probab=99.58 E-value=1.3e-14 Score=119.66 Aligned_cols=88 Identities=32% Similarity=0.518 Sum_probs=76.5
Q ss_pred hHHHHhhc-CceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEEE
Q psy7674 74 YEKELEKN-KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLLV 150 (164)
Q Consensus 74 ~~~~l~~~-gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvVi 150 (164)
+..++++. |++++.+++.+++.+++.+++ ..+.||++|+|||++|+.|++||. ..+++.++++.....+++++||
T Consensus 100 ~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~--~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~vvVI 177 (463)
T PRK06370 100 SEQWLRGLEGVDVFRGHARFESPNTVRVGG--ETLRAKRIFINTGARAAIPPIPGLDEVGYLTNETIFSLDELPEHLVII 177 (463)
T ss_pred HHHHHhcCCCcEEEEEEEEEccCCEEEECc--EEEEeCEEEEcCCCCCCCCCCCCCCcCceEcchHhhCccccCCEEEEE
Confidence 44567776 999999999888888888876 579999999999999999999997 4577888888777778999999
Q ss_pred CCcHHHHHhhccc
Q psy7674 151 GASYIALECAGCD 163 (164)
Q Consensus 151 GgG~~g~E~A~~l 163 (164)
|||++|+|+|..|
T Consensus 178 GgG~~g~E~A~~l 190 (463)
T PRK06370 178 GGGYIGLEFAQMF 190 (463)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999876
No 15
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.57 E-value=1.9e-14 Score=118.55 Aligned_cols=90 Identities=34% Similarity=0.447 Sum_probs=76.0
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEe--CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEE
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLL 149 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvV 149 (164)
++.++++.+++++.|++.+++++++.+ ++....+.||++|||||++|+.|++++. ..++++++++.+...|++++|
T Consensus 96 ~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~~~~~~~~~~~~~vvI 175 (458)
T PRK06912 96 IQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSKHAMSLPSIPSSLLI 175 (458)
T ss_pred HHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcchHHhCccccCCcEEE
Confidence 445677789999999999999888877 2322469999999999999988887764 567888999988888999999
Q ss_pred ECCcHHHHHhhccc
Q psy7674 150 VGASYIALECAGCD 163 (164)
Q Consensus 150 iGgG~~g~E~A~~l 163 (164)
||||++|+|+|..|
T Consensus 176 IGgG~iG~E~A~~l 189 (458)
T PRK06912 176 VGGGVIGCEFASIY 189 (458)
T ss_pred ECCCHHHHHHHHHH
Confidence 99999999999865
No 16
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.55 E-value=3.1e-14 Score=117.37 Aligned_cols=90 Identities=32% Similarity=0.524 Sum_probs=76.7
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEEEC
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLLVG 151 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvViG 151 (164)
+..++++.+++++.+++.+.+.+++.+++....+.||++|+|||++|+.|++||. ..++++++++.+...+++++|||
T Consensus 94 ~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~vvIIG 173 (463)
T TIGR02053 94 YEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEALALDRIPESLAVIG 173 (463)
T ss_pred HHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhhhCcccCCCeEEEEC
Confidence 4466788899999999999998888884322468999999999999999999986 34778888887777789999999
Q ss_pred CcHHHHHhhccc
Q psy7674 152 ASYIALECAGCD 163 (164)
Q Consensus 152 gG~~g~E~A~~l 163 (164)
||++|+|+|..|
T Consensus 174 gG~~g~E~A~~l 185 (463)
T TIGR02053 174 GGAIGVELAQAF 185 (463)
T ss_pred CCHHHHHHHHHH
Confidence 999999999876
No 17
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.54 E-value=3.6e-14 Score=116.26 Aligned_cols=88 Identities=26% Similarity=0.403 Sum_probs=75.1
Q ss_pred HHHhhcCceEEeeEEEEeeCcEEEeC--CeeEEEEeceEEEecCCCCCCCCCCCc---cceechhhhccCcCCCCcEEEE
Q psy7674 76 KELEKNKIDYFNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYPDIPGA---HLGITSDDLFSLNKDPGKVLLV 150 (164)
Q Consensus 76 ~~l~~~gv~~~~~~~~~~~~~~v~v~--~~~~~~~~d~liiAtGs~~~~p~i~g~---~~v~~~~~~~~~~~~~~~vvVi 150 (164)
+.+.+.+|+++.+++.+++.+++.+. ++...+.||++|+|||++|+.|++||. ++++++++++.+...+++++||
T Consensus 84 ~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vvII 163 (438)
T PRK07251 84 AMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGII 163 (438)
T ss_pred HHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEEEE
Confidence 45677899999999988888888772 222479999999999999999999985 4588888888887788999999
Q ss_pred CCcHHHHHhhccc
Q psy7674 151 GASYIALECAGCD 163 (164)
Q Consensus 151 GgG~~g~E~A~~l 163 (164)
|||++|+|+|..|
T Consensus 164 GgG~~g~e~A~~l 176 (438)
T PRK07251 164 GGGNIGLEFAGLY 176 (438)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999876
No 18
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.53 E-value=6e-14 Score=115.57 Aligned_cols=90 Identities=32% Similarity=0.471 Sum_probs=75.6
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEE
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVL 148 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vv 148 (164)
+.+++++.+++++.+++.+++.+++.+ ++....+.||++|+|||++|+.|++++. +.++++++++.+...+++++
T Consensus 100 ~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v~~~~~~~~~~~~~~~v~ 179 (461)
T PRK05249 100 RRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDSDSILSLDHLPRSLI 179 (461)
T ss_pred HHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeEEcHHHhhchhhcCCeEE
Confidence 345677889999999999998887766 3322479999999999999999887664 67888998888878899999
Q ss_pred EECCcHHHHHhhccc
Q psy7674 149 LVGASYIALECAGCD 163 (164)
Q Consensus 149 ViGgG~~g~E~A~~l 163 (164)
|||||++|+|+|..|
T Consensus 180 IiGgG~~g~E~A~~l 194 (461)
T PRK05249 180 IYGAGVIGCEYASIF 194 (461)
T ss_pred EECCCHHHHHHHHHH
Confidence 999999999999876
No 19
>PRK14727 putative mercuric reductase; Provisional
Probab=99.52 E-value=7.5e-14 Score=115.67 Aligned_cols=89 Identities=29% Similarity=0.428 Sum_probs=71.0
Q ss_pred HHHHhhc-CceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEE
Q psy7674 75 EKELEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVL 148 (164)
Q Consensus 75 ~~~l~~~-gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vv 148 (164)
...++.. +++++.|++.+.+++++.+ ++....+.||+||||||++|+.|++||. ...++.++.+.....|++++
T Consensus 113 ~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~~~~l~~~~~~k~vv 192 (479)
T PRK14727 113 QSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTPYWTSTEALFSDELPASLT 192 (479)
T ss_pred HHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCccceecchHHhccccCCCeEE
Confidence 3445544 8999999999999887776 3322469999999999999999999996 23456666665556789999
Q ss_pred EECCcHHHHHhhccc
Q psy7674 149 LVGASYIALECAGCD 163 (164)
Q Consensus 149 ViGgG~~g~E~A~~l 163 (164)
|||||++|+|+|..|
T Consensus 193 VIGgG~iG~E~A~~l 207 (479)
T PRK14727 193 VIGSSVVAAEIAQAY 207 (479)
T ss_pred EECCCHHHHHHHHHH
Confidence 999999999999876
No 20
>PRK14694 putative mercuric reductase; Provisional
Probab=99.52 E-value=6.7e-14 Score=115.62 Aligned_cols=88 Identities=35% Similarity=0.528 Sum_probs=71.0
Q ss_pred HHHhhc-CceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEE
Q psy7674 76 KELEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLL 149 (164)
Q Consensus 76 ~~l~~~-gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvV 149 (164)
..++++ +++++.++++++|++...+ +++...+.||+||+|||++|+.|++||. ..+.++++.+.+...+++++|
T Consensus 104 ~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~~~~~~l~~~~~~vvV 183 (468)
T PRK14694 104 SILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAETPYLTSTSALELDHIPERLLV 183 (468)
T ss_pred HHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCCCCceEcchhhhchhcCCCeEEE
Confidence 335444 8999999999998766555 3322479999999999999999999996 235667777777677899999
Q ss_pred ECCcHHHHHhhccc
Q psy7674 150 VGASYIALECAGCD 163 (164)
Q Consensus 150 iGgG~~g~E~A~~l 163 (164)
||||++|+|+|..|
T Consensus 184 iG~G~~G~E~A~~l 197 (468)
T PRK14694 184 IGASVVALELAQAF 197 (468)
T ss_pred ECCCHHHHHHHHHH
Confidence 99999999999876
No 21
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.52 E-value=5.5e-14 Score=119.94 Aligned_cols=90 Identities=27% Similarity=0.332 Sum_probs=75.3
Q ss_pred hHHHHhhcC-------ceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCC
Q psy7674 74 YEKELEKNK-------IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDP 144 (164)
Q Consensus 74 ~~~~l~~~g-------v~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~ 144 (164)
+...+++.+ ++++.|.+.+++++++.+..++..+.||++|||||++|+.|++++. +.++++++++.+...+
T Consensus 233 ~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lp 312 (659)
T PTZ00153 233 IENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQ 312 (659)
T ss_pred HHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcC
Confidence 455666664 8999999999999988873222679999999999999999886554 5689999998888788
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
++++|||||++|+|+|..|
T Consensus 313 k~VvIVGgG~iGvE~A~~l 331 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIY 331 (659)
T ss_pred CceEEECCCHHHHHHHHHH
Confidence 9999999999999999876
No 22
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.51 E-value=7.3e-14 Score=116.28 Aligned_cols=90 Identities=51% Similarity=0.897 Sum_probs=75.2
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEe-C-CeeEEEEeceEEEecCCCCCCCC-CCCc-cceechhhhccCcCCCCcEEE
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKF-A-GEERTVSAQNFIIAVGGRPTYPD-IPGA-HLGITSDDLFSLNKDPGKVLL 149 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v-~-~~~~~~~~d~liiAtGs~~~~p~-i~g~-~~v~~~~~~~~~~~~~~~vvV 149 (164)
++..++..+|+++.+++.+.+.+++.+ + +....+.||++|||||++|+.|+ +||. +...++++++.+...|++++|
T Consensus 108 ~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G~~~~~~~~~~~~~~~~~~~~vvI 187 (499)
T PTZ00052 108 YRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGAKEYSITSDDIFSLSKDPGKTLI 187 (499)
T ss_pred HHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCCccceeecHHHHhhhhcCCCeEEE
Confidence 344455679999999999988888877 2 22357999999999999999885 9987 566788898888778899999
Q ss_pred ECCcHHHHHhhccc
Q psy7674 150 VGASYIALECAGCD 163 (164)
Q Consensus 150 iGgG~~g~E~A~~l 163 (164)
||||++|+|+|..|
T Consensus 188 IGgG~iG~E~A~~l 201 (499)
T PTZ00052 188 VGASYIGLETAGFL 201 (499)
T ss_pred ECCCHHHHHHHHHH
Confidence 99999999999876
No 23
>PRK13748 putative mercuric reductase; Provisional
Probab=99.51 E-value=9.8e-14 Score=116.87 Aligned_cols=86 Identities=31% Similarity=0.470 Sum_probs=69.8
Q ss_pred Hhhc-CceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCcc--ceechhhhccCcCCCCcEEEEC
Q psy7674 78 LEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGAH--LGITSDDLFSLNKDPGKVLLVG 151 (164)
Q Consensus 78 l~~~-gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~~--~v~~~~~~~~~~~~~~~vvViG 151 (164)
+++. +|+++.+++.+++++++.+ ++....+.||+||+|||++|+.|++||.+ .+++.++.+.....|++++|||
T Consensus 198 ~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~vvViG 277 (561)
T PRK13748 198 LDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETPYWTSTEALVSDTIPERLAVIG 277 (561)
T ss_pred HhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCccceEccHHHhhcccCCCeEEEEC
Confidence 4444 8999999999999887766 33224699999999999999999999962 3556666666666789999999
Q ss_pred CcHHHHHhhccc
Q psy7674 152 ASYIALECAGCD 163 (164)
Q Consensus 152 gG~~g~E~A~~l 163 (164)
||++|+|+|..|
T Consensus 278 gG~ig~E~A~~l 289 (561)
T PRK13748 278 SSVVALELAQAF 289 (561)
T ss_pred CCHHHHHHHHHH
Confidence 999999999876
No 24
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.51 E-value=1.3e-13 Score=113.91 Aligned_cols=90 Identities=31% Similarity=0.454 Sum_probs=72.4
Q ss_pred hHHHHhhcCceEEeeEEEEeeCc-------EEEe---CCeeEEEEeceEEEecCCCCCCCC-CCCc-cceechhhhccCc
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKH-------RVKF---AGEERTVSAQNFIIAVGGRPTYPD-IPGA-HLGITSDDLFSLN 141 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~-------~v~v---~~~~~~~~~d~liiAtGs~~~~p~-i~g~-~~v~~~~~~~~~~ 141 (164)
+..++++.+|+++.++++++|++ ++.+ ++....+.||+||+|||++|+.|+ ++.. .+++++++++.+.
T Consensus 98 ~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~~~~~~~~~~~~ 177 (472)
T PRK05976 98 VAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPFDGEYVISSDEALSLE 177 (472)
T ss_pred HHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCceEEcchHhhCcc
Confidence 34566778999999999999887 6666 332257999999999999997654 3322 5578888888887
Q ss_pred CCCCcEEEECCcHHHHHhhccc
Q psy7674 142 KDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 142 ~~~~~vvViGgG~~g~E~A~~l 163 (164)
..+++++|||||++|+|+|..|
T Consensus 178 ~~~~~vvIIGgG~~G~E~A~~l 199 (472)
T PRK05976 178 TLPKSLVIVGGGVIGLEWASML 199 (472)
T ss_pred ccCCEEEEECCCHHHHHHHHHH
Confidence 7889999999999999999876
No 25
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.51 E-value=1.2e-13 Score=114.15 Aligned_cols=91 Identities=24% Similarity=0.392 Sum_probs=74.3
Q ss_pred hhHHHHhhcCceEEeeEEEE----eeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCC
Q psy7674 73 NYEKELEKNKIDYFNAKAVF----VDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKD 143 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~~~~----~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~ 143 (164)
.+++++++.+|+++.+++++ ++++++++ ++....+.||+||+|||++|+.|+.++. +.+++.++++.+...
T Consensus 97 ~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~~~~~~~~~~~~ 176 (466)
T PRK07845 97 DIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDGERILTWRQLYDLDEL 176 (466)
T ss_pred HHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCCCceEEeehhhhccccc
Confidence 35567888899999999988 66777766 3322369999999999999987775443 568888888887777
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
+++++|||||++|+|+|..|
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l 196 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAY 196 (466)
T ss_pred CCeEEEECCCHHHHHHHHHH
Confidence 89999999999999999876
No 26
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.49 E-value=1e-13 Score=114.14 Aligned_cols=82 Identities=28% Similarity=0.467 Sum_probs=70.4
Q ss_pred hcCceEEeeEEEEeeCcEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEEECCcHHH
Q psy7674 80 KNKIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLLVGASYIA 156 (164)
Q Consensus 80 ~~gv~~~~~~~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvViGgG~~g 156 (164)
+.||+++.|++.+.+.+++.+ ++ ..+.||++|||||++|+.|++.+. ..+.+.++++.+.+.|++++|||||++|
T Consensus 104 ~~gv~~~~g~~~~~~~~~V~~~~g--~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~ig 181 (452)
T TIGR03452 104 TPNIDVYDGHARFVGPRTLRTGDG--EEITGDQIVIAAGSRPYIPPAIADSGVRYHTNEDIMRLPELPESLVIVGGGYIA 181 (452)
T ss_pred cCCeEEEEEEEEEecCCEEEECCC--cEEEeCEEEEEECCCCCCCCCCCCCCCEEEcHHHHHhhhhcCCcEEEECCCHHH
Confidence 379999999999999999888 44 579999999999999998885432 3467888888887788999999999999
Q ss_pred HHhhccc
Q psy7674 157 LECAGCD 163 (164)
Q Consensus 157 ~E~A~~l 163 (164)
+|+|..|
T Consensus 182 ~E~A~~l 188 (452)
T TIGR03452 182 AEFAHVF 188 (452)
T ss_pred HHHHHHH
Confidence 9999876
No 27
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.48 E-value=2.4e-13 Score=111.48 Aligned_cols=83 Identities=25% Similarity=0.474 Sum_probs=70.4
Q ss_pred cCceEEeeEEEEeeCcEEEe--CCeeEEEEeceEEEecCCCCCCCCCCCc---cceechhhhccCcCCCCcEEEECCcHH
Q psy7674 81 NKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA---HLGITSDDLFSLNKDPGKVLLVGASYI 155 (164)
Q Consensus 81 ~gv~~~~~~~~~~~~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~i~g~---~~v~~~~~~~~~~~~~~~vvViGgG~~ 155 (164)
.+++++.+++++++.+.+.+ .+....+.||++|+|||++|+.|++||. ..++++++++.+...+++++|||||++
T Consensus 90 ~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~ 169 (441)
T PRK08010 90 PNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYI 169 (441)
T ss_pred CCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeEEEECCCHH
Confidence 49999999999998877766 2212369999999999999999999995 357888888887778899999999999
Q ss_pred HHHhhccc
Q psy7674 156 ALECAGCD 163 (164)
Q Consensus 156 g~E~A~~l 163 (164)
|+|+|..|
T Consensus 170 g~E~A~~l 177 (441)
T PRK08010 170 GVEFASMF 177 (441)
T ss_pred HHHHHHHH
Confidence 99999875
No 28
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.45 E-value=5.6e-13 Score=107.26 Aligned_cols=87 Identities=25% Similarity=0.303 Sum_probs=65.5
Q ss_pred HHHHhhcCceEEee-EEEEeeC--cEEEeCCeeEEEEeceEEEecCCCCCCCCCCCccceech---hhhccC---cCCCC
Q psy7674 75 EKELEKNKIDYFNA-KAVFVDK--HRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITS---DDLFSL---NKDPG 145 (164)
Q Consensus 75 ~~~l~~~gv~~~~~-~~~~~~~--~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~---~~~~~~---~~~~~ 145 (164)
+++++++|++++.+ ++..+|. +++.+++ ..+.||+||+|||++|..|++||.+.++++ +++..+ ...++
T Consensus 65 ~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~--~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~ 142 (377)
T PRK04965 65 GEFAEQFNLRLFPHTWVTDIDAEAQVVKSQG--NQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQ 142 (377)
T ss_pred HHHHHhCCCEEECCCEEEEEECCCCEEEECC--eEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCC
Confidence 35567789999876 6777774 4455565 679999999999999999999997435443 333222 13468
Q ss_pred cEEEECCcHHHHHhhccc
Q psy7674 146 KVLLVGASYIALECAGCD 163 (164)
Q Consensus 146 ~vvViGgG~~g~E~A~~l 163 (164)
+++|||||++|+|+|..|
T Consensus 143 ~vvViGgG~~g~e~A~~L 160 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDL 160 (377)
T ss_pred eEEEECCCHHHHHHHHHH
Confidence 999999999999999876
No 29
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.45 E-value=4.8e-13 Score=108.33 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=65.9
Q ss_pred HHHHhhcCceEEee-EEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--cceec---hhhhccCcC---
Q psy7674 75 EKELEKNKIDYFNA-KAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGIT---SDDLFSLNK--- 142 (164)
Q Consensus 75 ~~~l~~~gv~~~~~-~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~---~~~~~~~~~--- 142 (164)
.+++.+.+|+++.+ .+..+|. +.+.+ ++ ..+.||+||+|||++|+.|++++. +++++ ++|+..+..
T Consensus 65 ~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g--~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~ 142 (396)
T PRK09754 65 ANWWQENNVHLHSGVTIKTLGRDTRELVLTNG--ESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQ 142 (396)
T ss_pred HHHHHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhh
Confidence 34567789999988 4667764 45555 44 579999999999999988877653 55655 456544432
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
.+++++|||||++|+|+|..|
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l 163 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASA 163 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHH
Confidence 468999999999999999876
No 30
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.45 E-value=5.8e-13 Score=109.77 Aligned_cols=90 Identities=33% Similarity=0.492 Sum_probs=72.5
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEeC--CeeEEEEeceEEEecCCCCCCCC-CCCc-cceechhhhccCcCCCCcEEE
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYPD-IPGA-HLGITSDDLFSLNKDPGKVLL 149 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~--~~~~~~~~d~liiAtGs~~~~p~-i~g~-~~v~~~~~~~~~~~~~~~vvV 149 (164)
++.++++.||+++.+++++++++++++. .+...+.||+||+|||++|..|+ ++.. ..++++++++.+...+++++|
T Consensus 98 ~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~~~~~~~~~~~~~~vvV 177 (462)
T PRK06416 98 VEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWTSDEALNLDEVPKSLVV 177 (462)
T ss_pred HHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEcchHhhCccccCCeEEE
Confidence 4556778899999999999998877773 11257999999999999997654 3211 457788888887778899999
Q ss_pred ECCcHHHHHhhccc
Q psy7674 150 VGASYIALECAGCD 163 (164)
Q Consensus 150 iGgG~~g~E~A~~l 163 (164)
||||++|+|+|..|
T Consensus 178 vGgG~~g~E~A~~l 191 (462)
T PRK06416 178 IGGGYIGVEFASAY 191 (462)
T ss_pred ECCCHHHHHHHHHH
Confidence 99999999999876
No 31
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.43 E-value=1.1e-12 Score=108.33 Aligned_cols=88 Identities=30% Similarity=0.434 Sum_probs=69.7
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc----cceechhhhccCcCCCCc
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA----HLGITSDDLFSLNKDPGK 146 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~----~~v~~~~~~~~~~~~~~~ 146 (164)
++.++++.+|+++.|++.+.+++++.+ ++....+.||++|||||++|.. +||. ..++++++++.+...|++
T Consensus 99 ~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~--ipg~~~~~~~~~~~~~~~~~~~~~~~ 176 (466)
T PRK06115 99 VEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP--LPGVTIDNQRIIDSTGALSLPEVPKH 176 (466)
T ss_pred HHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC--CCCCCCCCCeEECHHHHhCCccCCCe
Confidence 445567779999999988877777766 3322469999999999999853 4442 456788888887778899
Q ss_pred EEEECCcHHHHHhhccc
Q psy7674 147 VLLVGASYIALECAGCD 163 (164)
Q Consensus 147 vvViGgG~~g~E~A~~l 163 (164)
++|||||++|+|+|..|
T Consensus 177 vvIIGgG~ig~E~A~~l 193 (466)
T PRK06115 177 LVVIGAGVIGLELGSVW 193 (466)
T ss_pred EEEECCCHHHHHHHHHH
Confidence 99999999999999876
No 32
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.43 E-value=9.6e-13 Score=108.39 Aligned_cols=90 Identities=31% Similarity=0.435 Sum_probs=74.2
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEeC--CeeEEEEeceEEEecCCCCCCCCCC-Cc--cceechhhhccCcCCCCcEE
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYPDIP-GA--HLGITSDDLFSLNKDPGKVL 148 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~--~~~~~~~~d~liiAtGs~~~~p~i~-g~--~~v~~~~~~~~~~~~~~~vv 148 (164)
+..++++.|++++.+++.+++++.+.+. +....+.||++|+|||++|+.|++| +. ..+.++++.+.+...+++++
T Consensus 95 ~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 174 (461)
T TIGR01350 95 VKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVITSTGALNLKEVPESLV 174 (461)
T ss_pred HHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEcchHHhccccCCCeEE
Confidence 3456677899999999999988887772 2114799999999999999988876 43 45788899888877889999
Q ss_pred EECCcHHHHHhhccc
Q psy7674 149 LVGASYIALECAGCD 163 (164)
Q Consensus 149 ViGgG~~g~E~A~~l 163 (164)
|||||++|+|+|..|
T Consensus 175 ViGgG~~g~e~A~~l 189 (461)
T TIGR01350 175 IIGGGVIGIEFASIF 189 (461)
T ss_pred EECCCHHHHHHHHHH
Confidence 999999999999765
No 33
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.43 E-value=6.5e-13 Score=116.33 Aligned_cols=88 Identities=30% Similarity=0.426 Sum_probs=68.2
Q ss_pred hHHHHhhcCceEEeeE-EEEeeCc--EEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--ccee---chhhhccC---c
Q psy7674 74 YEKELEKNKIDYFNAK-AVFVDKH--RVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGI---TSDDLFSL---N 141 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~-~~~~~~~--~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~---~~~~~~~~---~ 141 (164)
...++++.||+++.++ ++.+|.+ .+.+ ++ ..+.||+|||||||+|+.|++||. ..++ +.+++..+ .
T Consensus 65 ~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G--~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~ 142 (847)
T PRK14989 65 REGFYEKHGIKVLVGERAITINRQEKVIHSSAG--RTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACA 142 (847)
T ss_pred CHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCC--cEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHH
Confidence 3567888999999985 6677753 3444 34 679999999999999999999996 3444 55665543 2
Q ss_pred CCCCcEEEECCcHHHHHhhccc
Q psy7674 142 KDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 142 ~~~~~vvViGgG~~g~E~A~~l 163 (164)
..+++++|||||++|+|+|..|
T Consensus 143 ~~~k~vvVIGgG~iGlE~A~~L 164 (847)
T PRK14989 143 RRSKRGAVVGGGLLGLEAAGAL 164 (847)
T ss_pred hcCCeEEEECCCHHHHHHHHHH
Confidence 3568999999999999999876
No 34
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.43 E-value=5.1e-13 Score=106.82 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=67.2
Q ss_pred hhHHHHhhcCceEEeeEEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-cceec---hhhhcc------
Q psy7674 73 NYEKELEKNKIDYFNAKAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGIT---SDDLFS------ 139 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~---~~~~~~------ 139 (164)
.++++++++|++++.++++.+|. +++.+ ++ +.+.||+||+|||++|..|++||. +++++ .+++..
T Consensus 59 ~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~ 136 (364)
T TIGR03169 59 DLRRLARQAGARFVIAEATGIDPDRRKVLLANR--PPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALL 136 (364)
T ss_pred cHHHHHHhcCCEEEEEEEEEEecccCEEEECCC--CcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHH
Confidence 35577788899999999988874 45655 44 579999999999999999999986 54442 222221
Q ss_pred --C--cCCCCcEEEECCcHHHHHhhccc
Q psy7674 140 --L--NKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 140 --~--~~~~~~vvViGgG~~g~E~A~~l 163 (164)
. ....++++|||||++|+|+|..|
T Consensus 137 ~~~~~~~~~~~vvVvG~G~~g~E~A~~l 164 (364)
T TIGR03169 137 ESADAPPGTKRLAVVGGGAAGVEIALAL 164 (364)
T ss_pred HHHhcCCCCceEEEECCCHHHHHHHHHH
Confidence 1 11347999999999999999876
No 35
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.42 E-value=1.2e-12 Score=108.39 Aligned_cols=90 Identities=26% Similarity=0.411 Sum_probs=71.8
Q ss_pred hHHHHhhcCceEEeeEEEEee----CcEEEeC-CeeEEEEeceEEEecCCCCCCCC-CCCc-cceechhhhccCcCCCCc
Q psy7674 74 YEKELEKNKIDYFNAKAVFVD----KHRVKFA-GEERTVSAQNFIIAVGGRPTYPD-IPGA-HLGITSDDLFSLNKDPGK 146 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~----~~~v~v~-~~~~~~~~d~liiAtGs~~~~p~-i~g~-~~v~~~~~~~~~~~~~~~ 146 (164)
++.+++..+|+++.+++.+++ .+++.++ ++...+.||++|+|||++|+.|+ ++.. ..++++++++.+...|++
T Consensus 106 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 185 (475)
T PRK06327 106 IEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIILDNTGALNFTEVPKK 185 (475)
T ss_pred HHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCCCCCCCceEECcHHHhcccccCCe
Confidence 445667789999999998887 6677773 22257999999999999997554 4433 567788888887778899
Q ss_pred EEEECCcHHHHHhhccc
Q psy7674 147 VLLVGASYIALECAGCD 163 (164)
Q Consensus 147 vvViGgG~~g~E~A~~l 163 (164)
++|||||++|+|+|..|
T Consensus 186 vvVvGgG~~g~E~A~~l 202 (475)
T PRK06327 186 LAVIGAGVIGLELGSVW 202 (475)
T ss_pred EEEECCCHHHHHHHHHH
Confidence 99999999999999865
No 36
>KOG1335|consensus
Probab=99.42 E-value=3.2e-13 Score=106.70 Aligned_cols=89 Identities=33% Similarity=0.546 Sum_probs=77.5
Q ss_pred hhHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc----cceechhhhccCcCCCC
Q psy7674 73 NYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA----HLGITSDDLFSLNKDPG 145 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~----~~v~~~~~~~~~~~~~~ 145 (164)
.++.+|++.+|+++.|...+++++++.+ ++....+.++++|+||||. ++++||. +.+.+++.++++.+-|+
T Consensus 135 gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe--V~~~PGI~IDekkIVSStgALsL~~vPk 212 (506)
T KOG1335|consen 135 GIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE--VTPFPGITIDEKKIVSSTGALSLKEVPK 212 (506)
T ss_pred HHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc--cCCCCCeEecCceEEecCCccchhhCcc
Confidence 4778899999999999999999999988 5655789999999999995 3444454 78999999999999999
Q ss_pred cEEEECCcHHHHHhhccc
Q psy7674 146 KVLLVGASYIALECAGCD 163 (164)
Q Consensus 146 ~vvViGgG~~g~E~A~~l 163 (164)
+++|||||+||+|++..+
T Consensus 213 ~~~viG~G~IGLE~gsV~ 230 (506)
T KOG1335|consen 213 KLTVIGAGYIGLEMGSVW 230 (506)
T ss_pred eEEEEcCceeeeehhhHH
Confidence 999999999999998653
No 37
>KOG1336|consensus
Probab=99.41 E-value=2.6e-12 Score=103.85 Aligned_cols=110 Identities=21% Similarity=0.321 Sum_probs=81.3
Q ss_pred CCceEEEeccC-Cccccccc-----------chhhHHHHhhcCceEEee-EEEEee--CcEEEe-CCeeEEEEeceEEEe
Q psy7674 52 NNSVVIFSKSW-CPFCTKAK-----------ENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF-AGEERTVSAQNFIIA 115 (164)
Q Consensus 52 ~d~vvv~~~~~-cp~~~~~~-----------~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v-~~~~~~~~~d~liiA 115 (164)
+..++++++++ .||.++.. .....+++++++|+++.+ .++.+| .+++.+ +| +.+.|++|+||
T Consensus 99 ~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~G--e~~kys~LilA 176 (478)
T KOG1336|consen 99 TERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNG--ETLKYSKLIIA 176 (478)
T ss_pred CcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCC--ceeecceEEEe
Confidence 67777777555 44555332 223457899999999998 566776 456666 55 89999999999
Q ss_pred cCCCCCCCCCCCc--cceech---hhhc---cCcCCCCcEEEECCcHHHHHhhccc
Q psy7674 116 VGGRPTYPDIPGA--HLGITS---DDLF---SLNKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 116 tGs~~~~p~i~g~--~~v~~~---~~~~---~~~~~~~~vvViGgG~~g~E~A~~l 163 (164)
||++|+.|++||. +++... +|+. ...+...+|+++|||++|+|+|..|
T Consensus 177 TGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l 232 (478)
T KOG1336|consen 177 TGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAAL 232 (478)
T ss_pred ecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHH
Confidence 9999999999997 555543 3332 2223467899999999999999876
No 38
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=6.6e-13 Score=103.99 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=67.0
Q ss_pred hhhHHHHhhcCceEEee-EEEEeeC-------cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-----cceechhhh
Q psy7674 72 NNYEKELEKNKIDYFNA-KAVFVDK-------HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-----HLGITSDDL 137 (164)
Q Consensus 72 ~~~~~~l~~~gv~~~~~-~~~~~~~-------~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-----~~v~~~~~~ 137 (164)
..++++.+++.|+++.. .++.+.+ .++++ +| ..+....+|+|||++|+-.++||. +.+.-|..+
T Consensus 270 ~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nG--avLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHC 347 (520)
T COG3634 270 AALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANG--AVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHC 347 (520)
T ss_pred HHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCC--ceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCC
Confidence 35788999999999876 4444432 34555 56 789999999999999999999997 234444443
Q ss_pred ccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674 138 FSLNKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 138 ~~~~~~~~~vvViGgG~~g~E~A~~l 163 (164)
..-.-.+|+|+|||||++|+|+|--|
T Consensus 348 DGPLF~gK~VAVIGGGNSGvEAAIDL 373 (520)
T COG3634 348 DGPLFKGKRVAVIGGGNSGVEAAIDL 373 (520)
T ss_pred CCcccCCceEEEECCCcchHHHHHhH
Confidence 33234568999999999999998655
No 39
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.39 E-value=2.8e-12 Score=105.96 Aligned_cols=87 Identities=24% Similarity=0.289 Sum_probs=67.4
Q ss_pred HHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCC-CCCccceechhhhccCcCCCCcEEEECC
Q psy7674 77 ELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPD-IPGAHLGITSDDLFSLNKDPGKVLLVGA 152 (164)
Q Consensus 77 ~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~-i~g~~~v~~~~~~~~~~~~~~~vvViGg 152 (164)
.++..+|+++.+++.+++++++.+ ++....+.||++|||||++|+.|+ ++....+++.++.+.....|++++||||
T Consensus 101 ~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~~~~~~~~~~~~~~~vvVIGg 180 (466)
T PRK07818 101 LMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTYEEQILSRELPKSIVIAGA 180 (466)
T ss_pred HHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEEchHHHhccccCCCeEEEECC
Confidence 345568999999999999888777 332357999999999999998653 2211456777776555567899999999
Q ss_pred cHHHHHhhccc
Q psy7674 153 SYIALECAGCD 163 (164)
Q Consensus 153 G~~g~E~A~~l 163 (164)
|++|+|+|..|
T Consensus 181 G~ig~E~A~~l 191 (466)
T PRK07818 181 GAIGMEFAYVL 191 (466)
T ss_pred cHHHHHHHHHH
Confidence 99999999876
No 40
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.38 E-value=2.2e-12 Score=112.58 Aligned_cols=88 Identities=28% Similarity=0.368 Sum_probs=67.9
Q ss_pred hHHHHhhcCceEEee-EEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--cceec---hhhhccC---c
Q psy7674 74 YEKELEKNKIDYFNA-KAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGIT---SDDLFSL---N 141 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~---~~~~~~~---~ 141 (164)
..+++++.||+++.+ +++.+|. +.+.+ ++ ..+.||+||+|||++|+.|++||. .++++ .+|+..+ .
T Consensus 60 ~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g--~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~ 137 (785)
T TIGR02374 60 SKDWYEKHGITLYTGETVIQIDTDQKQVITDAG--RTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMA 137 (785)
T ss_pred CHHHHHHCCCEEEcCCeEEEEECCCCEEEECCC--cEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHh
Confidence 456788899999988 5777875 44555 44 679999999999999999999996 34543 3444332 2
Q ss_pred CCCCcEEEECCcHHHHHhhccc
Q psy7674 142 KDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 142 ~~~~~vvViGgG~~g~E~A~~l 163 (164)
..+++++|||||++|+|+|..|
T Consensus 138 ~~~k~vvVVGgG~~GlE~A~~L 159 (785)
T TIGR02374 138 QRFKKAAVIGGGLLGLEAAVGL 159 (785)
T ss_pred hcCCeEEEECCCHHHHHHHHHH
Confidence 3468999999999999999876
No 41
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.36 E-value=9.2e-13 Score=106.18 Aligned_cols=93 Identities=23% Similarity=0.379 Sum_probs=70.6
Q ss_pred chhhHHHHhhcC-ceEEeeEEEEee--CcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc-ccee---chhhhccCc--
Q psy7674 71 ENNYEKELEKNK-IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGI---TSDDLFSLN-- 141 (164)
Q Consensus 71 ~~~~~~~l~~~g-v~~~~~~~~~~~--~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~---~~~~~~~~~-- 141 (164)
...++.+++..+ ++|+.++++.+| .++|.++. ...+.||+||+|+||++..+++||. ++.+ +.+|+.++.
T Consensus 60 ~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~-~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~ 138 (405)
T COG1252 60 AIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLAD-LGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRH 138 (405)
T ss_pred eccHHHHhcccCceEEEEEEEEEEcccCCEEEeCC-CccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHH
Confidence 345678888555 999999999987 46677633 2679999999999999999999997 6654 344543321
Q ss_pred ---------CCC-----CcEEEECCcHHHHHhhcccC
Q psy7674 142 ---------KDP-----GKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 142 ---------~~~-----~~vvViGgG~~g~E~A~~l~ 164 (164)
+.+ .+++|+|||++|+|+|+.|+
T Consensus 139 l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~ 175 (405)
T COG1252 139 LLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELA 175 (405)
T ss_pred HHHHHHHhhccccccceeEEEEECCChhHHHHHHHHH
Confidence 112 36999999999999999873
No 42
>KOG2495|consensus
Probab=99.35 E-value=1.7e-12 Score=103.82 Aligned_cols=127 Identities=19% Similarity=0.224 Sum_probs=82.2
Q ss_pred CCcceEEeeceEec------------CCceEE-----Eec-----cCCcccccccch--hhHHHHhhc--CceEEeeEEE
Q psy7674 38 KTVPNIFIHGKHID------------NNSVVI-----FSK-----SWCPFCTKAKEN--NYEKELEKN--KIDYFNAKAV 91 (164)
Q Consensus 38 ~~vp~v~i~~~~ig------------~d~vvv-----~~~-----~~cp~~~~~~~~--~~~~~l~~~--gv~~~~~~~~ 91 (164)
..-|++.|-|.-++ ||.++| |.. +.|.++...++. ..+...+.. ++.|++.++.
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~ 132 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECT 132 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccE
Confidence 33567777664444 666665 222 223366665533 344444444 7888888888
Q ss_pred EeeC--cEEEe---CC----eeEEEEeceEEEecCCCCCCCCCCCc-cceech---hhhccC-------------c----
Q psy7674 92 FVDK--HRVKF---AG----EERTVSAQNFIIAVGGRPTYPDIPGA-HLGITS---DDLFSL-------------N---- 141 (164)
Q Consensus 92 ~~~~--~~v~v---~~----~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~---~~~~~~-------------~---- 141 (164)
.+|+ +++.+ .+ .+..+.||+||+|+|+.++.+++||. ++.... .|+..+ .
T Consensus 133 ~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~ 212 (491)
T KOG2495|consen 133 KIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSD 212 (491)
T ss_pred eecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCCh
Confidence 8874 55665 11 12578999999999999999999998 554322 111111 0
Q ss_pred ---CCCCcEEEECCcHHHHHhhcccC
Q psy7674 142 ---KDPGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 142 ---~~~~~vvViGgG~~g~E~A~~l~ 164 (164)
+..-+++|||||++|+|+|+.|+
T Consensus 213 eerkRlLh~VVVGGGPTGVEFAaEL~ 238 (491)
T KOG2495|consen 213 EERKRLLHFVVVGGGPTGVEFAAELA 238 (491)
T ss_pred HHhhheEEEEEECCCCcceeehHHHH
Confidence 11248999999999999999874
No 43
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.35 E-value=1.2e-12 Score=110.46 Aligned_cols=139 Identities=24% Similarity=0.269 Sum_probs=90.1
Q ss_pred CChhHHHHHHHhhcCCCCcceEEeeceEecCCceEEEeccCCcccccccchhhHHHHhhcCceEEee-EEEEeeCc--EE
Q psy7674 22 PNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDKH--RV 98 (164)
Q Consensus 22 ~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~--~v 98 (164)
.-.+.+++.+. .......=++|=...+..|+.+.+-+--.-+.........-.++++++||+++.+ .++++|.. .+
T Consensus 14 ag~r~iEell~-~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V 92 (793)
T COG1251 14 AGHRTIEELLE-SAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVV 92 (793)
T ss_pred chhhHHHHHHh-cCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcceE
Confidence 33466666665 4344434344434456667775542211111122222223457889999999998 67788753 34
Q ss_pred Ee-CCeeEEEEeceEEEecCCCCCCCCCCCc--ccee---chhhhccC---cCCCCcEEEECCcHHHHHhhccc
Q psy7674 99 KF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGI---TSDDLFSL---NKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 99 ~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~---~~~~~~~~---~~~~~~vvViGgG~~g~E~A~~l 163 (164)
.. .+ ..+.||+|++||||.|.+||+||. +.++ +.+|+... .+..++.+|||||..|+|+|..|
T Consensus 93 ~t~~g--~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L 164 (793)
T COG1251 93 TTDAG--RTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGL 164 (793)
T ss_pred EccCC--cEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHH
Confidence 33 34 789999999999999999999997 4555 34444332 23456789999999999999876
No 44
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.35 E-value=2.9e-12 Score=104.70 Aligned_cols=90 Identities=24% Similarity=0.269 Sum_probs=65.2
Q ss_pred hHHHHhhcCceEEeeEEEEeeC--cEEEeC---------CeeEEEEeceEEEecCCCCCCCCCCCc-ccee---chhhhc
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDK--HRVKFA---------GEERTVSAQNFIIAVGGRPTYPDIPGA-HLGI---TSDDLF 138 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~--~~v~v~---------~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~---~~~~~~ 138 (164)
++.+++..+++++.++++.+|. +.+.+. .++..+.||+||+|||++|..|++||. ++++ +.+++.
T Consensus 68 ~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~ 147 (424)
T PTZ00318 68 VRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHAR 147 (424)
T ss_pred HHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHH
Confidence 4566777899999999999874 556551 223579999999999999999999997 4433 222222
Q ss_pred cCc--------------------CCCCcEEEECCcHHHHHhhccc
Q psy7674 139 SLN--------------------KDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 139 ~~~--------------------~~~~~vvViGgG~~g~E~A~~l 163 (164)
.+. ...++++|||||++|+|+|..|
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l 192 (424)
T PTZ00318 148 GIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAEL 192 (424)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHH
Confidence 110 0124899999999999999876
No 45
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.34 E-value=7.6e-12 Score=103.10 Aligned_cols=84 Identities=38% Similarity=0.559 Sum_probs=69.1
Q ss_pred HHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc-----cceechhhhccCcCCCCcEEEE
Q psy7674 76 KELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA-----HLGITSDDLFSLNKDPGKVLLV 150 (164)
Q Consensus 76 ~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~-----~~v~~~~~~~~~~~~~~~vvVi 150 (164)
..++..+++++.+++.+++.+++.+++ ..+.||++|+|||++ .|++||. ..++++++.+.+...+++++||
T Consensus 100 ~~~~~~~v~~~~g~~~~~~~~~v~v~~--~~~~~d~lIiATGs~--~p~ipg~~~~~~~~~~~~~~~~~~~~~~k~v~VI 175 (460)
T PRK06292 100 GLEKKPKIDKIKGTARFVDPNTVEVNG--ERIEAKNIVIATGSR--VPPIPGVWLILGDRLLTSDDAFELDKLPKSLAVI 175 (460)
T ss_pred HHHhhCCCEEEEEEEEEccCCEEEECc--EEEEeCEEEEeCCCC--CCCCCCCcccCCCcEECchHHhCccccCCeEEEE
Confidence 345667999999999888888887765 679999999999999 3444442 4567888888877888999999
Q ss_pred CCcHHHHHhhccc
Q psy7674 151 GASYIALECAGCD 163 (164)
Q Consensus 151 GgG~~g~E~A~~l 163 (164)
|||++|+|+|..|
T Consensus 176 GgG~~g~E~A~~l 188 (460)
T PRK06292 176 GGGVIGLELGQAL 188 (460)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999875
No 46
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.34 E-value=9.9e-12 Score=102.00 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=61.0
Q ss_pred HHhhcCceEEe-eEEEEeeC--cEEEe-CC---eeEEEEeceEEEecCCCCCCCCCCCccceech---hhhccC-----c
Q psy7674 77 ELEKNKIDYFN-AKAVFVDK--HRVKF-AG---EERTVSAQNFIIAVGGRPTYPDIPGAHLGITS---DDLFSL-----N 141 (164)
Q Consensus 77 ~l~~~gv~~~~-~~~~~~~~--~~v~v-~~---~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~---~~~~~~-----~ 141 (164)
+.++.|++++. .++..+|. +++.+ ++ +...+.||+||||||++|+.|++++ +++++. +++..+ .
T Consensus 67 ~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~ 145 (438)
T PRK13512 67 FYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFES-DITFTLRNLEDTDAIDQFIKA 145 (438)
T ss_pred HHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCC-CCeEEecCHHHHHHHHHHHhh
Confidence 34567999976 47777774 55665 21 1225789999999999999988776 444443 232221 2
Q ss_pred CCCCcEEEECCcHHHHHhhccc
Q psy7674 142 KDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 142 ~~~~~vvViGgG~~g~E~A~~l 163 (164)
..+++++|||||++|+|+|..|
T Consensus 146 ~~~~~vvViGgG~ig~E~A~~l 167 (438)
T PRK13512 146 NQVDKALVVGAGYISLEVLENL 167 (438)
T ss_pred cCCCEEEEECCCHHHHHHHHHH
Confidence 2478999999999999999876
No 47
>KOG1752|consensus
Probab=99.30 E-value=1.9e-12 Score=85.68 Aligned_cols=53 Identities=45% Similarity=0.570 Sum_probs=49.2
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS 54 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~ 54 (164)
++.||...++++.++|+|.++++.++|++|.+++|++|+|++||+|+|||+.+
T Consensus 30 ~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~ 82 (104)
T KOG1752|consen 30 AKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGAS 82 (104)
T ss_pred HHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHH
Confidence 46688889999999999999999999999999999999999999999999543
No 48
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.24 E-value=3.2e-11 Score=98.52 Aligned_cols=88 Identities=23% Similarity=0.358 Sum_probs=62.8
Q ss_pred HHHhhcCceEEee-EEEEee--CcEEEe--CCeeEEEE--eceEEEecCCCCCCCCCCCc--cceechh---hhccC---
Q psy7674 76 KELEKNKIDYFNA-KAVFVD--KHRVKF--AGEERTVS--AQNFIIAVGGRPTYPDIPGA--HLGITSD---DLFSL--- 140 (164)
Q Consensus 76 ~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~~~~~--~d~liiAtGs~~~~p~i~g~--~~v~~~~---~~~~~--- 140 (164)
.++++.|++++.+ ++..+| .+++.+ +++...+. ||+||+|||++|+.|++||. +++++.. ++..+
T Consensus 52 ~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~ 131 (427)
T TIGR03385 52 VFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQY 131 (427)
T ss_pred HHHHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHH
Confidence 4457889998755 677776 455655 22124567 99999999999999999985 4455432 22211
Q ss_pred --cCCCCcEEEECCcHHHHHhhccc
Q psy7674 141 --NKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 141 --~~~~~~vvViGgG~~g~E~A~~l 163 (164)
...+++++|||||++|+|+|..|
T Consensus 132 l~~~~~~~vvViGgG~~g~e~A~~l 156 (427)
T TIGR03385 132 IDKNKVENVVIIGGGYIGIEMAEAL 156 (427)
T ss_pred HhhcCCCeEEEECCCHHHHHHHHHH
Confidence 13468999999999999999876
No 49
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.20 E-value=3.9e-10 Score=94.44 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=63.3
Q ss_pred hhHHHHhhcCceEEee-EEEEeeC----cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-cc----eechhhhccCc
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVDK----HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-HL----GITSDDLFSLN 141 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~~----~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~----v~~~~~~~~~~ 141 (164)
.+.+++++++++++.+ ++..++. ..+.+ ++ ..+.||++|+|||++|+.|++||. ++ +..+.......
T Consensus 271 ~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g--~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~ 348 (517)
T PRK15317 271 ALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANG--AVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPL 348 (517)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCC--CEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchh
Confidence 3566778889999876 5666643 23434 33 579999999999999999999986 21 22222111112
Q ss_pred CCCCcEEEECCcHHHHHhhcccC
Q psy7674 142 KDPGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 142 ~~~~~vvViGgG~~g~E~A~~l~ 164 (164)
..+++|+|||||++|+|+|..|+
T Consensus 349 ~~gk~VvVVGgG~~g~e~A~~L~ 371 (517)
T PRK15317 349 FKGKRVAVIGGGNSGVEAAIDLA 371 (517)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH
Confidence 34689999999999999998763
No 50
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.18 E-value=8.4e-11 Score=96.44 Aligned_cols=89 Identities=25% Similarity=0.394 Sum_probs=64.2
Q ss_pred HHHHhhcCceEEee-EEEEee--CcEEEe-C-CeeEEEE--eceEEEecCCCCCCCCCCCc--cceech---hhhccCc-
Q psy7674 75 EKELEKNKIDYFNA-KAVFVD--KHRVKF-A-GEERTVS--AQNFIIAVGGRPTYPDIPGA--HLGITS---DDLFSLN- 141 (164)
Q Consensus 75 ~~~l~~~gv~~~~~-~~~~~~--~~~v~v-~-~~~~~~~--~d~liiAtGs~~~~p~i~g~--~~v~~~---~~~~~~~- 141 (164)
.+.+++.|++++.+ +++.+| .+.+.+ + +++..+. ||+||+|||++|+.|++||. ++++++ ++...+.
T Consensus 63 ~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~ 142 (444)
T PRK09564 63 PEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKE 142 (444)
T ss_pred HHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHH
Confidence 45677889998765 677776 455666 2 1123455 99999999999999999886 455543 3333332
Q ss_pred ----CCCCcEEEECCcHHHHHhhccc
Q psy7674 142 ----KDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 142 ----~~~~~vvViGgG~~g~E~A~~l 163 (164)
..+++++|||||++|+|+|..|
T Consensus 143 ~l~~~~~~~vvVvGgG~~g~e~A~~l 168 (444)
T PRK09564 143 LLKDEEIKNIVIIGAGFIGLEAVEAA 168 (444)
T ss_pred HHhhcCCCEEEEECCCHHHHHHHHHH
Confidence 2468999999999999999875
No 51
>PRK10262 thioredoxin reductase; Provisional
Probab=99.16 E-value=1.6e-10 Score=91.09 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=61.8
Q ss_pred hHHHHhhcCceEEeeEEEEee--CcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCcc-----ceechhhhccCcCCCCc
Q psy7674 74 YEKELEKNKIDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAH-----LGITSDDLFSLNKDPGK 146 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~--~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~-----~v~~~~~~~~~~~~~~~ 146 (164)
++++...+++++..+++..++ .....++.+...+.||++|+|||++|+.|++||.+ .+..+.........+++
T Consensus 69 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~ 148 (321)
T PRK10262 69 MHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQK 148 (321)
T ss_pred HHHHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCE
Confidence 355566677788777665554 33344422114689999999999999999999851 22222222222345789
Q ss_pred EEEECCcHHHHHhhcccC
Q psy7674 147 VLLVGASYIALECAGCDK 164 (164)
Q Consensus 147 vvViGgG~~g~E~A~~l~ 164 (164)
++|||+|++|+|+|..|+
T Consensus 149 vvVvGgG~~g~e~A~~l~ 166 (321)
T PRK10262 149 VAVIGGGNTAVEEALYLS 166 (321)
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 999999999999998763
No 52
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.12 E-value=4.1e-10 Score=87.20 Aligned_cols=91 Identities=21% Similarity=0.141 Sum_probs=63.4
Q ss_pred hhhHHHHhhcCceEEeeEEEEeeCc----EEEeCCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhccCcC
Q psy7674 72 NNYEKELEKNKIDYFNAKAVFVDKH----RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFSLNK 142 (164)
Q Consensus 72 ~~~~~~l~~~gv~~~~~~~~~~~~~----~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~~~~ 142 (164)
..+++.+++++++++..+++.++.. .+..++ ...+.||++|+|||++|+.|++||. . .+..+........
T Consensus 61 ~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~-~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~ 139 (300)
T TIGR01292 61 EKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGD-GKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFF 139 (300)
T ss_pred HHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCC-CCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhc
Confidence 3456778888999988777777542 233322 2579999999999999999889985 1 1222211111112
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
.+++++|||+|++|+|+|..|
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l 160 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYL 160 (300)
T ss_pred CCCEEEEECCChHHHHHHHHH
Confidence 458999999999999999876
No 53
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.07 E-value=5.5e-10 Score=94.28 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=62.0
Q ss_pred hhHHHHhhcCceEEeeEEEEeeC--c--EEEeCCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhccCcCC
Q psy7674 73 NYEKELEKNKIDYFNAKAVFVDK--H--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFSLNKD 143 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~~~~~~~--~--~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~~~~~ 143 (164)
.++.++++.+++++.+++..++. + .+...+ ..+.++++|+|||++|+.|++||. . .+..+.........
T Consensus 65 ~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~--g~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~ 142 (555)
T TIGR03143 65 EMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTAR--GDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFT 142 (555)
T ss_pred HHHHHHHHcCCEEeccEEEEEEecCCEEEEEecC--CEEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcC
Confidence 44566777899998777777653 2 233333 358899999999999999999995 1 12222111111234
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
+++++|||||++|+|+|..|
T Consensus 143 g~~VvVIGgG~~g~E~A~~L 162 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFL 162 (555)
T ss_pred CCEEEEECCCHHHHHHHHHH
Confidence 68999999999999999876
No 54
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.06 E-value=7e-10 Score=92.89 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=62.5
Q ss_pred hhHHHHhhcCceEEee-EEEEeeC--c--EEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhccCc
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVDK--H--RVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFSLN 141 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~~--~--~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~~~ 141 (164)
.+.+++++++++++.+ ++..++. + .+.+ ++ ..+.||++++|||++|+.|++||. + .+..+.......
T Consensus 272 ~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g--~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~ 349 (515)
T TIGR03140 272 NLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESG--EVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPF 349 (515)
T ss_pred HHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCC--CEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhh
Confidence 3456777889999886 5555542 2 3333 34 579999999999999999999985 2 122221111112
Q ss_pred CCCCcEEEECCcHHHHHhhcccC
Q psy7674 142 KDPGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 142 ~~~~~vvViGgG~~g~E~A~~l~ 164 (164)
..+++|+|||||++|+|+|..|+
T Consensus 350 ~~~k~VvViGgG~~g~E~A~~L~ 372 (515)
T TIGR03140 350 FKGKDVAVIGGGNSGIEAAIDLA 372 (515)
T ss_pred cCCCEEEEECCcHHHHHHHHHHH
Confidence 24689999999999999998763
No 55
>PRK12831 putative oxidoreductase; Provisional
Probab=98.99 E-value=3.3e-10 Score=93.71 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=61.1
Q ss_pred HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC-CCCCCCCCCc--cceechhhhccC-----------
Q psy7674 75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGA--HLGITSDDLFSL----------- 140 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs-~~~~p~i~g~--~~v~~~~~~~~~----------- 140 (164)
.+++++.|++++.++... +.+.+++....+.||++++|||+ .|+.|++||. +++++..+++..
T Consensus 198 ~~~~~~~gv~i~~~~~v~---~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~ 274 (464)
T PRK12831 198 IENIKKLGVKIETNVVVG---KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEY 274 (464)
T ss_pred HHHHHHcCCEEEcCCEEC---CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccc
Confidence 356788899998876331 22333221124579999999999 6888999996 567776654421
Q ss_pred ---cCCCCcEEEECCcHHHHHhhccc
Q psy7674 141 ---NKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 141 ---~~~~~~vvViGgG~~g~E~A~~l 163 (164)
...+++|+|||||++|+|+|..|
T Consensus 275 ~~~~~~gk~VvVIGgG~va~d~A~~l 300 (464)
T PRK12831 275 DTPIKVGKKVAVVGGGNVAMDAARTA 300 (464)
T ss_pred cCcccCCCeEEEECCcHHHHHHHHHH
Confidence 13468999999999999999765
No 56
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.94 E-value=5.6e-10 Score=91.98 Aligned_cols=84 Identities=18% Similarity=0.221 Sum_probs=59.4
Q ss_pred HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC-CCCCCCCCCc--cceechhhhccC-----------
Q psy7674 75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGA--HLGITSDDLFSL----------- 140 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs-~~~~p~i~g~--~~v~~~~~~~~~----------- 140 (164)
.+.+++.|++++.+... .+.+++++ ....||+|++|||+ +|+.|++||. .++++..+.+..
T Consensus 190 ~~~l~~~gv~~~~~~~v---~~~v~~~~--~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~ 264 (449)
T TIGR01316 190 IKTLKKLGVTFRMNFLV---GKTATLEE--LFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPH 264 (449)
T ss_pred HHHHHhCCcEEEeCCcc---CCcCCHHH--HHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccc
Confidence 35677889999887533 22333322 23469999999998 6888899986 456665544311
Q ss_pred ----cCCCCcEEEECCcHHHHHhhccc
Q psy7674 141 ----NKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 141 ----~~~~~~vvViGgG~~g~E~A~~l 163 (164)
...+++|+|||||++|+|+|..|
T Consensus 265 ~~~~~~~gk~VvVIGgG~~a~d~A~~l 291 (449)
T TIGR01316 265 ADTPVYAGKSVVVIGGGNTAVDSARTA 291 (449)
T ss_pred cCCcccCCCeEEEECCCHHHHHHHHHH
Confidence 12358999999999999999865
No 57
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.91 E-value=1.4e-09 Score=71.80 Aligned_cols=53 Identities=30% Similarity=0.364 Sum_probs=48.1
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS 54 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~ 54 (164)
++-+|++.+++|++++||.++++.++++++.+++|++|+|+|||+|++||+.+
T Consensus 24 ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d 76 (99)
T TIGR02189 24 VKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLE 76 (99)
T ss_pred HHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHH
Confidence 35678899999999999999999999999999999999999999999998543
No 58
>PRK10824 glutaredoxin-4; Provisional
Probab=98.91 E-value=1.2e-09 Score=73.70 Aligned_cols=71 Identities=14% Similarity=0.263 Sum_probs=53.2
Q ss_pred ccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceEEEeccCCcccccccchhhHHHHhhcC
Q psy7674 3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNK 82 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~g 82 (164)
+-||++.+++|.+++++.+ .++|++|.+++|++|||+|||+|+|||+.+.++ ....+..+..+|+..+
T Consensus 37 k~lL~~~~i~~~~idi~~d---~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~---------~l~~~G~L~~lL~~~~ 104 (115)
T PRK10824 37 VQALSACGERFAYVDILQN---PDIRAELPKYANWPTFPQLWVDGELVGGCDIVI---------EMYQRGELQQLIKETA 104 (115)
T ss_pred HHHHHHcCCCceEEEecCC---HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHH---------HHHHCCCHHHHHHHHH
Confidence 4578888999999999876 679999999999999999999999999654331 0011233556666666
Q ss_pred ceE
Q psy7674 83 IDY 85 (164)
Q Consensus 83 v~~ 85 (164)
+.+
T Consensus 105 ~~~ 107 (115)
T PRK10824 105 AKY 107 (115)
T ss_pred hhh
Confidence 654
No 59
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.90 E-value=3.2e-09 Score=84.80 Aligned_cols=89 Identities=24% Similarity=0.260 Sum_probs=56.6
Q ss_pred HHHHhhcCceEEeeEEEEee-C------cEE--E-eCCeeEEEEeceEEEecCC-CCCCCCCCCc--cceechhhhc-c-
Q psy7674 75 EKELEKNKIDYFNAKAVFVD-K------HRV--K-FAGEERTVSAQNFIIAVGG-RPTYPDIPGA--HLGITSDDLF-S- 139 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~~~~~~-~------~~v--~-v~~~~~~~~~d~liiAtGs-~~~~p~i~g~--~~v~~~~~~~-~- 139 (164)
.+.+.+.+++++.++....+ . ... . +..+...+.||+||+|||+ .|+.|++||. .++++..+.. .
T Consensus 75 ~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~ 154 (352)
T PRK12770 75 VKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRI 154 (352)
T ss_pred HHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHh
Confidence 34566679999887544321 1 001 1 1111124789999999999 4778889985 4566543321 1
Q ss_pred ---------CcCC----CCcEEEECCcHHHHHhhccc
Q psy7674 140 ---------LNKD----PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 140 ---------~~~~----~~~vvViGgG~~g~E~A~~l 163 (164)
.... .++++|||+|++|+|+|..|
T Consensus 155 ~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l 191 (352)
T PRK12770 155 RAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEA 191 (352)
T ss_pred hhccccccccccccccCCCEEEEECCCHHHHHHHHHH
Confidence 1111 47999999999999999765
No 60
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7.6e-08 Score=75.61 Aligned_cols=145 Identities=17% Similarity=0.102 Sum_probs=85.7
Q ss_pred EEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceEEEeccCCccccc-----ccchhhHHHHhhcCceEEee
Q psy7674 14 QVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTK-----AKENNYEKELEKNKIDYFNA 88 (164)
Q Consensus 14 ~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~-----~~~~~~~~~l~~~gv~~~~~ 88 (164)
.++=|...| .-+-+++........++.++-++..-++-...... +..|.+.. ......+++....++++...
T Consensus 5 DviIIG~GP--AGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~v-enypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~ 81 (305)
T COG0492 5 DVIIIGGGP--AGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDV-ENYPGFPGGILGPELMEQMKEQAEKFGVEIVED 81 (305)
T ss_pred eEEEECCCH--HHHHHHHHHHHcCCCcEEEEecCCcCCccccceee-cCCCCCccCCchHHHHHHHHHHHhhcCeEEEEE
Confidence 344444443 45555664322222345555444433333333323 33343333 12334566777789999887
Q ss_pred EEEEeeCc--EEEe--CCeeEEEEeceEEEecCCCCCCCCCCCc-----cceechhhhccCcCCCCcEEEECCcHHHHHh
Q psy7674 89 KAVFVDKH--RVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA-----HLGITSDDLFSLNKDPGKVLLVGASYIALEC 159 (164)
Q Consensus 89 ~~~~~~~~--~v~v--~~~~~~~~~d~liiAtGs~~~~p~i~g~-----~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~ 159 (164)
++..++.. ...+ +. ..+.++++|||||+.++.|.+||. +.+..|..+.. ....++|+|||||.+++|.
T Consensus 82 ~v~~v~~~~~~F~v~t~~--~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~ 158 (305)
T COG0492 82 EVEKVELEGGPFKVKTDK--GTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEE 158 (305)
T ss_pred EEEEEeecCceEEEEECC--CeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHH
Confidence 77776533 3333 33 349999999999999999988864 23333332222 2344799999999999999
Q ss_pred hcccC
Q psy7674 160 AGCDK 164 (164)
Q Consensus 160 A~~l~ 164 (164)
|.+|+
T Consensus 159 Al~L~ 163 (305)
T COG0492 159 ALYLS 163 (305)
T ss_pred HHHHH
Confidence 98874
No 61
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.86 E-value=1.6e-08 Score=74.18 Aligned_cols=91 Identities=25% Similarity=0.294 Sum_probs=54.2
Q ss_pred hhHHHHhhcCceEEee-EEEEee--C--cEEEeCCeeEEEEeceEEEecCC--CCCCCCCCC-c-cceechhhhccCcC-
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVD--K--HRVKFAGEERTVSAQNFIIAVGG--RPTYPDIPG-A-HLGITSDDLFSLNK- 142 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~--~--~~v~v~~~~~~~~~d~liiAtGs--~~~~p~i~g-~-~~v~~~~~~~~~~~- 142 (164)
.++...++.++++..+ +++.+. . -.+++... ..+.+|+||+|||. .|+.|.++| . ...+.+.+......
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~-~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~~~~~~ 165 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDG-RTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWRDPEDF 165 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS--EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG-STTGGC
T ss_pred HHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEec-ceeeeeeEEEeeeccCCCCccccccccccceEehhhcCChhhc
Confidence 3556667788887766 455553 2 23555331 57899999999995 888899999 4 44555555544333
Q ss_pred CCCcEEEECCcHHHHHhhcccC
Q psy7674 143 DPGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l~ 164 (164)
..++|+|||+|.+|+++|..|+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~ 187 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALA 187 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHT
T ss_pred CCCcEEEEcChHHHHHHHHHHH
Confidence 4589999999999999998764
No 62
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.80 E-value=4.2e-09 Score=86.96 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=58.7
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCCCCCc--cceechhhhccC-------c--
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGA--HLGITSDDLFSL-------N-- 141 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~i~g~--~~v~~~~~~~~~-------~-- 141 (164)
..+++++.|++++.++... +.+++++ ..+.||++++|||++ |+.+++||. +++++..+.+.. .
T Consensus 196 ~~~~l~~~gv~~~~~~~v~---~~v~~~~--~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~ 270 (457)
T PRK11749 196 EVERLLKLGVEIRTNTEVG---RDITLDE--LRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDL 270 (457)
T ss_pred HHHHHHHcCCEEEeCCEEC---CccCHHH--HHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccC
Confidence 3456778899998875431 2233322 237899999999996 677788886 456654433221 1
Q ss_pred CCCCcEEEECCcHHHHHhhccc
Q psy7674 142 KDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 142 ~~~~~vvViGgG~~g~E~A~~l 163 (164)
..+++|+|||||++|+|+|..|
T Consensus 271 ~~g~~VvViGgG~~g~e~A~~l 292 (457)
T PRK11749 271 PVGKRVVVIGGGNTAMDAARTA 292 (457)
T ss_pred CCCCeEEEECCCHHHHHHHHHH
Confidence 2468999999999999999765
No 63
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.79 E-value=1.9e-08 Score=89.38 Aligned_cols=108 Identities=11% Similarity=0.226 Sum_probs=71.5
Q ss_pred CCceEEEeccCCc-----ccccc----cc--hhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC-C
Q psy7674 52 NNSVVIFSKSWCP-----FCTKA----KE--NNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-R 119 (164)
Q Consensus 52 ~d~vvv~~~~~cp-----~~~~~----~~--~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs-~ 119 (164)
+..++||.+...+ |..+. +. ....+.+++.|++|+.+.... +.++++. .....||++++|||+ .
T Consensus 329 G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---~dit~~~-l~~~~yDAV~LAtGA~~ 404 (944)
T PRK12779 329 GFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---KTATLED-LKAAGFWKIFVGTGAGL 404 (944)
T ss_pred CCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec---cEEeHHH-hccccCCEEEEeCCCCC
Confidence 6778888875422 33332 11 122356788899998875432 2344422 134579999999999 4
Q ss_pred CCCCCCCCc--cceechhhhccC----------------cCCCCcEEEECCcHHHHHhhccc
Q psy7674 120 PTYPDIPGA--HLGITSDDLFSL----------------NKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 120 ~~~p~i~g~--~~v~~~~~~~~~----------------~~~~~~vvViGgG~~g~E~A~~l 163 (164)
|+.+++||. +++++..+.+.. ...+++|+|||||++|+++|..+
T Consensus 405 pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta 466 (944)
T PRK12779 405 PTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTA 466 (944)
T ss_pred CCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHH
Confidence 888899996 567766554421 01358999999999999999764
No 64
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.78 E-value=6.1e-09 Score=90.84 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=60.4
Q ss_pred HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC-CCCCCCCCCc--cceechhhhccC-----------
Q psy7674 75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGA--HLGITSDDLFSL----------- 140 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs-~~~~p~i~g~--~~v~~~~~~~~~----------- 140 (164)
.+++++.|++++.+... .+.++++.. ....||+++||||+ .|+.|++||. +++++..+++..
T Consensus 488 ~~~l~~~gv~~~~~~~v---~~~v~~~~l-~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~ 563 (752)
T PRK12778 488 IENLKKLGVKFETDVIV---GKTITIEEL-EEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDS 563 (752)
T ss_pred HHHHHHCCCEEECCCEE---CCcCCHHHH-hhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccc
Confidence 35677889999877533 223334221 34679999999999 5888999986 567776654321
Q ss_pred ---cCCCCcEEEECCcHHHHHhhccc
Q psy7674 141 ---NKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 141 ---~~~~~~vvViGgG~~g~E~A~~l 163 (164)
...+++|+|||||++|+|+|..+
T Consensus 564 ~~~~~~gk~VvVIGgG~~a~d~A~~~ 589 (752)
T PRK12778 564 DTPIKFGKKVAVVGGGNTAMDSARTA 589 (752)
T ss_pred cCcccCCCcEEEECCcHHHHHHHHHH
Confidence 12358999999999999999765
No 65
>PHA03050 glutaredoxin; Provisional
Probab=98.76 E-value=6.9e-09 Score=69.49 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=45.8
Q ss_pred cccccCCCCC---ccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCC
Q psy7674 2 VDIQTAPPDY---NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN 53 (164)
Q Consensus 2 ~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d 53 (164)
++-+|++.++ .|++++|+...++.++|+.|.+++|++|||++||+|++||+.
T Consensus 29 ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ 83 (108)
T PHA03050 29 ALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGY 83 (108)
T ss_pred HHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeCh
Confidence 3557788888 799999998777889999999999999999999999999844
No 66
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.76 E-value=2.2e-08 Score=83.19 Aligned_cols=85 Identities=16% Similarity=0.332 Sum_probs=58.0
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCC-CCCCCCCc--cceechhhhcc----------C
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP-TYPDIPGA--HLGITSDDLFS----------L 140 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~-~~p~i~g~--~~v~~~~~~~~----------~ 140 (164)
+...++..+++|+.+... .+.++++. -...||++++|||+.+ +.+++||. .++++..++.. +
T Consensus 85 ~~~~~~~~~v~~~~nv~v---g~dvtl~~--L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~ 159 (491)
T PLN02852 85 FSRVATDDRVSFFGNVTL---GRDVSLSE--LRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHL 159 (491)
T ss_pred HHHHHHHCCeEEEcCEEE---CccccHHH--HhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhh
Confidence 345566778888764322 12233322 2347999999999986 67789986 56776655531 1
Q ss_pred ---cCCCCcEEEECCcHHHHHhhccc
Q psy7674 141 ---NKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 141 ---~~~~~~vvViGgG~~g~E~A~~l 163 (164)
....++|+|||+|++|+|+|..|
T Consensus 160 ~~~~~~gk~VvVIGgGnvAlD~Ar~L 185 (491)
T PLN02852 160 PPDLKSSDTAVVLGQGNVALDCARIL 185 (491)
T ss_pred hhcccCCCEEEEECCCHHHHHHHHHH
Confidence 12358999999999999999875
No 67
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.70 E-value=1e-07 Score=78.88 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=58.0
Q ss_pred hhHHHHhhcCce--EEee-EEEEeeC--cE--EEe-CC--eeEEEEeceEEEecC--CCCCCCCCCCccc----eechhh
Q psy7674 73 NYEKELEKNKID--YFNA-KAVFVDK--HR--VKF-AG--EERTVSAQNFIIAVG--GRPTYPDIPGAHL----GITSDD 136 (164)
Q Consensus 73 ~~~~~l~~~gv~--~~~~-~~~~~~~--~~--v~v-~~--~~~~~~~d~liiAtG--s~~~~p~i~g~~~----v~~~~~ 136 (164)
.++...+..++. +..+ +++.++. .. +++ ++ ......||+||+||| +.|++|++||.+. ...+.+
T Consensus 116 YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~ 195 (461)
T PLN02172 116 YLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHN 195 (461)
T ss_pred HHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecc
Confidence 345555667776 5444 5666642 33 333 22 123567999999999 7899999998621 112222
Q ss_pred hccCc-CCCCcEEEECCcHHHHHhhccc
Q psy7674 137 LFSLN-KDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 137 ~~~~~-~~~~~vvViGgG~~g~E~A~~l 163 (164)
..... ...++|+|||+|.+|+|+|..|
T Consensus 196 yr~~~~~~gk~VvVVG~G~Sg~diA~~L 223 (461)
T PLN02172 196 YRVPDPFKNEVVVVIGNFASGADISRDI 223 (461)
T ss_pred cCCccccCCCEEEEECCCcCHHHHHHHH
Confidence 22111 2468999999999999999876
No 68
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.67 E-value=4e-08 Score=87.24 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=55.5
Q ss_pred HHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCC-CCCCCCCc-cceechhhhcc-------CcCCCCc
Q psy7674 76 KELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP-TYPDIPGA-HLGITSDDLFS-------LNKDPGK 146 (164)
Q Consensus 76 ~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~-~~p~i~g~-~~v~~~~~~~~-------~~~~~~~ 146 (164)
+++.+.|++++.+.... +.++. .....||+|+||||+++ +.++++|. +++++..+.+. ....+++
T Consensus 597 e~l~~~GVe~~~gt~Vd-----i~le~-L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKr 670 (1019)
T PRK09853 597 EFVKAHGVKFEFGCSPD-----LTVEQ-LKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKH 670 (1019)
T ss_pred HHHHHcCCEEEeCceeE-----EEhhh-heeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCE
Confidence 56777899998875431 23322 13456999999999985 45568886 45655433221 1234689
Q ss_pred EEEECCcHHHHHhhcc
Q psy7674 147 VLLVGASYIALECAGC 162 (164)
Q Consensus 147 vvViGgG~~g~E~A~~ 162 (164)
|+|||||++|+|+|..
T Consensus 671 VVVIGGGnVAmD~Ar~ 686 (1019)
T PRK09853 671 VVVVGGGNTAMDAARA 686 (1019)
T ss_pred EEEECCChHHHHHHHH
Confidence 9999999999999864
No 69
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.66 E-value=2.5e-08 Score=82.70 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=56.5
Q ss_pred HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCCCCCc--cceechhhhc--------c----
Q psy7674 75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGA--HLGITSDDLF--------S---- 139 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~i~g~--~~v~~~~~~~--------~---- 139 (164)
.+++.+.|++++.++....+ +..+. ....||++++|||++ |+.+++||. +++++..+.+ .
T Consensus 200 ~~~~~~~gv~~~~~~~v~~~---~~~~~--~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~ 274 (471)
T PRK12810 200 IELMEAEGIEFRTNVEVGKD---ITAEE--LLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETE 274 (471)
T ss_pred HHHHHhCCcEEEeCCEECCc---CCHHH--HHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhcccccc
Confidence 45678889999887543221 11111 235799999999997 777889886 5565532211 1
Q ss_pred --CcCCCCcEEEECCcHHHHHhhcc
Q psy7674 140 --LNKDPGKVLLVGASYIALECAGC 162 (164)
Q Consensus 140 --~~~~~~~vvViGgG~~g~E~A~~ 162 (164)
....+++|+|||||++|+|+|..
T Consensus 275 ~~~~~~gk~VvVIGgG~~g~e~A~~ 299 (471)
T PRK12810 275 PFISAKGKHVVVIGGGDTGMDCVGT 299 (471)
T ss_pred ccccCCCCEEEEECCcHHHHHHHHH
Confidence 12346899999999999999864
No 70
>PRK13984 putative oxidoreductase; Provisional
Probab=98.65 E-value=2.1e-08 Score=85.54 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=57.1
Q ss_pred HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCCCCCc--cceechhhhcc-C----------
Q psy7674 75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGA--HLGITSDDLFS-L---------- 140 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~i~g~--~~v~~~~~~~~-~---------- 140 (164)
.+++++.|++++.++.+..+ +..+. ....||++++|||++ |+.+++||. .++++..+.+. +
T Consensus 340 ~~~~~~~gv~~~~~~~v~~~---~~~~~--~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~ 414 (604)
T PRK13984 340 IAFIEALGVKIHLNTRVGKD---IPLEE--LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPK 414 (604)
T ss_pred HHHHHHCCcEEECCCEeCCc---CCHHH--HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCc
Confidence 35678889999877443211 11122 235799999999997 577789986 45555433321 1
Q ss_pred cCCCCcEEEECCcHHHHHhhccc
Q psy7674 141 NKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 141 ~~~~~~vvViGgG~~g~E~A~~l 163 (164)
...+++|+|||||++|+|+|..|
T Consensus 415 ~~~~k~VvVIGGG~~g~e~A~~l 437 (604)
T PRK13984 415 PKIPRSLVVIGGGNVAMDIARSM 437 (604)
T ss_pred CCCCCcEEEECCchHHHHHHHHH
Confidence 12368999999999999999865
No 71
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.65 E-value=1.8e-09 Score=71.23 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=52.4
Q ss_pred EecCCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEE-eceEEEecCCCCCCCC--C
Q psy7674 49 HIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVS-AQNFIIAVGGRPTYPD--I 125 (164)
Q Consensus 49 ~ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~-~d~liiAtGs~~~~p~--i 125 (164)
.|..+.++||+++|||||.+++ +.|++.++++ +.+.++....... .+.+.-.|| .+.+|. +
T Consensus 4 ~i~~~~Vvvysk~~Cp~C~~ak-----~~L~~~~i~~----------~~vdid~~~~~~~~~~~l~~~tg-~~tvP~Vfi 67 (99)
T TIGR02189 4 MVSEKAVVIFSRSSCCMCHVVK-----RLLLTLGVNP----------AVHEIDKEPAGKDIENALSRLGC-SPAVPAVFV 67 (99)
T ss_pred hhccCCEEEEECCCCHHHHHHH-----HHHHHcCCCC----------EEEEcCCCccHHHHHHHHHHhcC-CCCcCeEEE
Confidence 3667889999999999999999 8999999987 3344432101111 112333355 446777 3
Q ss_pred CCccceechhhhccCcCC
Q psy7674 126 PGAHLGITSDDLFSLNKD 143 (164)
Q Consensus 126 ~g~~~v~~~~~~~~~~~~ 143 (164)
.| +++++++++..+.+.
T Consensus 68 ~g-~~iGG~ddl~~l~~~ 84 (99)
T TIGR02189 68 GG-KLVGGLENVMALHIS 84 (99)
T ss_pred CC-EEEcCHHHHHHHHHc
Confidence 55 889999998877543
No 72
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.8e-08 Score=62.97 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=44.7
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN 52 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~ 52 (164)
++-+|++.++.|..++++.++. .+.++++.+.+|++|||+|||+++++|+
T Consensus 17 ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg 66 (80)
T COG0695 17 AKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGG 66 (80)
T ss_pred HHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence 4668899999999999999865 6889999988899999999999998885
No 73
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.63 E-value=3.1e-08 Score=65.06 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=43.1
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS 54 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~ 54 (164)
++-+|++.+++|..++|+.+ .+.+++|.+++|++++|++||+|++||+.+
T Consensus 33 ak~lL~~~~i~~~~~di~~~---~~~~~~l~~~tg~~tvP~vfi~g~~iGG~d 82 (97)
T TIGR00365 33 AVQILKACGVPFAYVNVLED---PEIRQGIKEYSNWPTIPQLYVKGEFVGGCD 82 (97)
T ss_pred HHHHHHHcCCCEEEEECCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeChH
Confidence 45678899999999988755 788999999999999999999999998544
No 74
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.61 E-value=3.7e-08 Score=88.20 Aligned_cols=87 Identities=16% Similarity=0.243 Sum_probs=59.1
Q ss_pred hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCCCCCc--cceechhhhccC----------
Q psy7674 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGA--HLGITSDDLFSL---------- 140 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~i~g~--~~v~~~~~~~~~---------- 140 (164)
..+++++.|++++.+.... +.++++.-.....||+|+||||+. |+.|++||. ..+++..+.+..
T Consensus 486 ~~~~l~~~Gv~~~~~~~vg---~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~ 562 (1006)
T PRK12775 486 EVQRLVDIGVKIETNKVIG---KTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFP 562 (1006)
T ss_pred HHHHHHHCCCEEEeCCccC---CccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccc
Confidence 3466788999998875431 122222100135699999999994 888999996 566666543311
Q ss_pred -----cCCCCcEEEECCcHHHHHhhccc
Q psy7674 141 -----NKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 141 -----~~~~~~vvViGgG~~g~E~A~~l 163 (164)
...+++|+|||||++|+++|..+
T Consensus 563 ~~~~~~~~Gk~VvVIGgG~tA~D~A~~a 590 (1006)
T PRK12775 563 FLDTPISLGKSVVVIGAGNTAMDCLRVA 590 (1006)
T ss_pred cccCCccCCCEEEEECCcHHHHHHHHHH
Confidence 12468999999999999987643
No 75
>KOG1346|consensus
Probab=98.60 E-value=4.4e-08 Score=78.85 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=59.6
Q ss_pred hcCceEEee-EEEEee--CcEEEe-CCeeEEEEeceEEEecCCCCCCCC-CCCc-----c---ceechhhhccCcC---C
Q psy7674 80 KNKIDYFNA-KAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPD-IPGA-----H---LGITSDDLFSLNK---D 143 (164)
Q Consensus 80 ~~gv~~~~~-~~~~~~--~~~v~v-~~~~~~~~~d~liiAtGs~~~~p~-i~g~-----~---~v~~~~~~~~~~~---~ 143 (164)
.-||.++.| .++.+| .+.|.+ || .++.||+++||||.+|+..+ +... . +.....|...+++ .
T Consensus 269 nGGvAvl~G~kvvkid~~d~~V~LnDG--~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~ae 346 (659)
T KOG1346|consen 269 NGGVAVLRGRKVVKIDEEDKKVILNDG--TTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAE 346 (659)
T ss_pred cCceEEEeccceEEeecccCeEEecCC--cEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhh
Confidence 348888888 566676 355666 66 78999999999999998766 3222 1 2234555554443 3
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.++|.|||+|++|-|+|+.|
T Consensus 347 k~siTIiGnGflgSELacsl 366 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSL 366 (659)
T ss_pred cceEEEEcCcchhhhHHHHH
Confidence 48899999999999999876
No 76
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.59 E-value=5.2e-08 Score=63.07 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=43.6
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS 54 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~ 54 (164)
++.+|++.+++|+.++++.+ .+++++|.+++|++++|++||+|++||+.+
T Consensus 29 ak~~L~~~~i~y~~idv~~~---~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~ 78 (90)
T cd03028 29 VVQILNQLGVDFGTFDILED---EEVRQGLKEYSNWPTFPQLYVNGELVGGCD 78 (90)
T ss_pred HHHHHHHcCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeCHH
Confidence 34578889999999999866 789999999999999999999999998543
No 77
>KOG1752|consensus
Probab=98.55 E-value=6.7e-09 Score=68.81 Aligned_cols=77 Identities=35% Similarity=0.552 Sum_probs=52.6
Q ss_pred ecCCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEE-eceEEEecCCCCCCCC--CC
Q psy7674 50 IDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVS-AQNFIIAVGGRPTYPD--IP 126 (164)
Q Consensus 50 ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~-~d~liiAtGs~~~~p~--i~ 126 (164)
+..+.++||||+|||||.+.| .+|.+.++.. ..+++|....... -+++.-.||++ .+|. |.
T Consensus 11 i~~~~VVifSKs~C~~c~~~k-----~ll~~~~v~~----------~vvELD~~~~g~eiq~~l~~~tg~~-tvP~vFI~ 74 (104)
T KOG1752|consen 11 ISENPVVIFSKSSCPYCHRAK-----ELLSDLGVNP----------KVVELDEDEDGSEIQKALKKLTGQR-TVPNVFIG 74 (104)
T ss_pred hhcCCEEEEECCcCchHHHHH-----HHHHhCCCCC----------EEEEccCCCCcHHHHHHHHHhcCCC-CCCEEEEC
Confidence 557789999999999999999 8888877765 3455532111111 13344457766 6777 45
Q ss_pred CccceechhhhccCcCC
Q psy7674 127 GAHLGITSDDLFSLNKD 143 (164)
Q Consensus 127 g~~~v~~~~~~~~~~~~ 143 (164)
| +++++++|+..++..
T Consensus 75 G-k~iGG~~dl~~lh~~ 90 (104)
T KOG1752|consen 75 G-KFIGGASDLMALHKS 90 (104)
T ss_pred C-EEEcCHHHHHHHHHc
Confidence 5 899999998877644
No 78
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.53 E-value=9.5e-08 Score=79.59 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=55.3
Q ss_pred HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCCCCCc--cceechhhhc-------------
Q psy7674 75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGA--HLGITSDDLF------------- 138 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~i~g~--~~v~~~~~~~------------- 138 (164)
.+++++.|++++.++....+ +..+. ....||+|++|||++ |+.|++||. +.+++.-+.+
T Consensus 200 ~~~~~~~Gv~~~~~~~v~~~---~~~~~--~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~ 274 (485)
T TIGR01317 200 IDLLSAEGIDFVTNTEIGVD---ISADE--LKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFK 274 (485)
T ss_pred HHHHHhCCCEEECCCEeCCc---cCHHH--HHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhcccccc
Confidence 35678889999887543211 11111 235799999999998 888899986 4555432211
Q ss_pred ---cCcCCCCcEEEECCcHHHHHhhc
Q psy7674 139 ---SLNKDPGKVLLVGASYIALECAG 161 (164)
Q Consensus 139 ---~~~~~~~~vvViGgG~~g~E~A~ 161 (164)
.....+++|+|||||++|+|+|.
T Consensus 275 ~~~~~~~~gk~VvViGgG~~g~d~a~ 300 (485)
T TIGR01317 275 DIIFIKAKGKKVVVIGGGDTGADCVG 300 (485)
T ss_pred ccccccCCCCEEEEECCcHHHHHHHH
Confidence 01124689999999999999864
No 79
>PHA03050 glutaredoxin; Provisional
Probab=98.53 E-value=6.8e-09 Score=69.51 Aligned_cols=80 Identities=29% Similarity=0.320 Sum_probs=52.6
Q ss_pred ecCCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCe-eEEEEeceEEEecCCCCCCCCC--C
Q psy7674 50 IDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGE-ERTVSAQNFIIAVGGRPTYPDI--P 126 (164)
Q Consensus 50 ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~-~~~~~~d~liiAtGs~~~~p~i--~ 126 (164)
+..+.++||+++|||||.+++ +.|++.+++... -..+.++.. ...-..+.+.-.||.+ .+|.+ .
T Consensus 10 i~~~~V~vys~~~CPyC~~ak-----~~L~~~~i~~~~-------~~~i~i~~~~~~~~~~~~l~~~tG~~-tVP~IfI~ 76 (108)
T PHA03050 10 LANNKVTIFVKFTCPFCRNAL-----DILNKFSFKRGA-------YEIVDIKEFKPENELRDYFEQITGGR-TVPRIFFG 76 (108)
T ss_pred hccCCEEEEECCCChHHHHHH-----HHHHHcCCCcCC-------cEEEECCCCCCCHHHHHHHHHHcCCC-CcCEEEEC
Confidence 556789999999999999999 889999983200 022333210 0111235555567754 67773 5
Q ss_pred CccceechhhhccCcCC
Q psy7674 127 GAHLGITSDDLFSLNKD 143 (164)
Q Consensus 127 g~~~v~~~~~~~~~~~~ 143 (164)
| +++++++|+..+.+.
T Consensus 77 g-~~iGG~ddl~~l~~~ 92 (108)
T PHA03050 77 K-TSIGGYSDLLEIDNM 92 (108)
T ss_pred C-EEEeChHHHHHHHHc
Confidence 5 889999998877644
No 80
>KOG0404|consensus
Probab=98.45 E-value=4.4e-07 Score=67.83 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=81.1
Q ss_pred cCCCCcceEEeeceEec---CC-ceEEEeccCCccccc-----ccchhhHHHHhhcCceEEeeEEEEee--CcEEEe--C
Q psy7674 35 TGQKTVPNIFIHGKHID---NN-SVVIFSKSWCPFCTK-----AKENNYEKELEKNKIDYFNAKAVFVD--KHRVKF--A 101 (164)
Q Consensus 35 ~g~~~vp~v~i~~~~ig---~d-~vvv~~~~~cp~~~~-----~~~~~~~~~l~~~gv~~~~~~~~~~~--~~~v~v--~ 101 (164)
....--|.+|-+...-+ +. ..+--+-+..|.... ..+..++++..+.|.+++..++..+| .+...+ +
T Consensus 28 araelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td 107 (322)
T KOG0404|consen 28 ARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTD 107 (322)
T ss_pred hhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeeeeehhhccccCCCeEEEec
Confidence 34455688876654222 22 222222234453222 23556778888899999998887765 233444 4
Q ss_pred CeeEEEEeceEEEecCCCCCCCCCCCc-cc-ee--------chhhhccCcCCCCcEEEECCcHHHHHhhcccC
Q psy7674 102 GEERTVSAQNFIIAVGGRPTYPDIPGA-HL-GI--------TSDDLFSLNKDPGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 102 ~~~~~~~~d~liiAtGs~~~~p~i~g~-~~-v~--------~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~ 164 (164)
. +.+.+|.+|+|||++.++.-+||. +. .+ -||.+..+ ...|..+|||||..++|-|.+|.
T Consensus 108 ~--~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapi-frnk~laVIGGGDsA~EEA~fLt 177 (322)
T KOG0404|consen 108 A--RPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPI-FRNKPLAVIGGGDSAMEEALFLT 177 (322)
T ss_pred C--CceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchh-hcCCeeEEEcCcHHHHHHHHHHH
Confidence 4 679999999999999998888886 32 11 12222211 12378999999999999998873
No 81
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.44 E-value=1.6e-07 Score=80.86 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=56.3
Q ss_pred HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCC-CCCCCCCc--cceechhhhcc------CcCCCC
Q psy7674 75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP-TYPDIPGA--HLGITSDDLFS------LNKDPG 145 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~-~~p~i~g~--~~v~~~~~~~~------~~~~~~ 145 (164)
.+.+.+.|++++.++....+ ++++. ....||++++|||+++ +.+++||. .++++..+.+. ....++
T Consensus 250 ~~~l~~~Gv~i~~~~~v~~d---v~~~~--~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk 324 (652)
T PRK12814 250 IAPLRAMGAEFRFNTVFGRD---ITLEE--LQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGK 324 (652)
T ss_pred HHHHHHcCCEEEeCCcccCc---cCHHH--HHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCC
Confidence 35667889998876543211 22221 1235999999999986 46778886 45555444332 123468
Q ss_pred cEEEECCcHHHHHhhccc
Q psy7674 146 KVLLVGASYIALECAGCD 163 (164)
Q Consensus 146 ~vvViGgG~~g~E~A~~l 163 (164)
+|+|||||++|+|+|..+
T Consensus 325 ~VvVIGgG~~a~e~A~~l 342 (652)
T PRK12814 325 KVVVIGGGNTAIDAARTA 342 (652)
T ss_pred eEEEECCCHHHHHHHHHH
Confidence 999999999999999764
No 82
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=98.42 E-value=2.9e-07 Score=59.81 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=39.8
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCC----CCcceEEeeceEecC
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQ----KTVPNIFIHGKHIDN 52 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~----~~vp~v~i~~~~ig~ 52 (164)
|+.||+.+++.|+.++|+.+ ++.++.|.+.+|. +++|++|++++|+|+
T Consensus 22 v~~lL~~k~I~f~eiDI~~d---~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg 73 (92)
T cd03030 22 VLGFLEAKKIEFEEVDISMN---EENRQWMRENVPNENGKPLPPQIFNGDEYCGD 73 (92)
T ss_pred HHHHHHHCCCceEEEecCCC---HHHHHHHHHhcCCCCCCCCCCEEEECCEEeeC
Confidence 45688999999999999876 6666677777664 999999999999984
No 83
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.41 E-value=1.5e-07 Score=56.06 Aligned_cols=46 Identities=28% Similarity=0.450 Sum_probs=40.8
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEe
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~i 50 (164)
++.+|++.+++|++++|+.+ ++.++.+.+.+|..++|++|++|++|
T Consensus 15 ~~~~L~~~~i~y~~~dv~~~---~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 15 AKEFLDEKGIPYEEVDVDED---EEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp HHHHHHHTTBEEEEEEGGGS---HHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred HHHHHHHcCCeeeEcccccc---hhHHHHHHHHcCCCccCEEEECCEEC
Confidence 45678899999999999999 58888888888999999999999976
No 84
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.7e-08 Score=63.08 Aligned_cols=72 Identities=31% Similarity=0.551 Sum_probs=48.5
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCC-CCcccee
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDI-PGAHLGI 132 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i-~g~~~v~ 132 (164)
.++||++++||||.++| +.|.+.|+++ ..+.++........+.+..++|.+ .+|.| -+..+++
T Consensus 2 ~v~iyt~~~CPyC~~ak-----~~L~~~g~~~----------~~i~~~~~~~~~~~~~~~~~~g~~-tvP~I~i~~~~ig 65 (80)
T COG0695 2 NVTIYTKPGCPYCKRAK-----RLLDRKGVDY----------EEIDVDDDEPEEAREMVKRGKGQR-TVPQIFIGGKHVG 65 (80)
T ss_pred CEEEEECCCCchHHHHH-----HHHHHcCCCc----------EEEEecCCcHHHHHHHHHHhCCCC-CcCEEEECCEEEe
Confidence 47899999999999999 8999999998 334553211123345555555655 56773 2326888
Q ss_pred chhhhccCc
Q psy7674 133 TSDDLFSLN 141 (164)
Q Consensus 133 ~~~~~~~~~ 141 (164)
+++++..+.
T Consensus 66 g~~d~~~~~ 74 (80)
T COG0695 66 GCDDLDALE 74 (80)
T ss_pred CcccHHHHH
Confidence 777766543
No 85
>PRK10824 glutaredoxin-4; Provisional
Probab=98.40 E-value=2.1e-08 Score=67.65 Aligned_cols=75 Identities=19% Similarity=0.315 Sum_probs=53.3
Q ss_pred ecCCceEEEecc-----CCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC
Q psy7674 50 IDNNSVVIFSKS-----WCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 50 ig~d~vvv~~~~-----~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~ 124 (164)
|..+.++||+|+ |||||.+++ +.|++.++++. .+.++.+ .. ..+.+.--|| +|.+|.
T Consensus 12 I~~~~Vvvf~Kg~~~~p~Cpyc~~ak-----~lL~~~~i~~~----------~idi~~d-~~-~~~~l~~~sg-~~TVPQ 73 (115)
T PRK10824 12 IAENPILLYMKGSPKLPSCGFSAQAV-----QALSACGERFA----------YVDILQN-PD-IRAELPKYAN-WPTFPQ 73 (115)
T ss_pred HhcCCEEEEECCCCCCCCCchHHHHH-----HHHHHcCCCce----------EEEecCC-HH-HHHHHHHHhC-CCCCCe
Confidence 667889999995 999999999 89999999873 3444221 11 2234444565 557887
Q ss_pred --CCCccceechhhhccCcCC
Q psy7674 125 --IPGAHLGITSDDLFSLNKD 143 (164)
Q Consensus 125 --i~g~~~v~~~~~~~~~~~~ 143 (164)
|.| +++++++++..+.+.
T Consensus 74 IFI~G-~~IGG~ddl~~l~~~ 93 (115)
T PRK10824 74 LWVDG-ELVGGCDIVIEMYQR 93 (115)
T ss_pred EEECC-EEEcChHHHHHHHHC
Confidence 456 899999998876543
No 86
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.39 E-value=4.5e-07 Score=80.87 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=54.7
Q ss_pred HHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC-CCCCCCc-cceechhhhcc-------CcCCCCc
Q psy7674 76 KELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT-YPDIPGA-HLGITSDDLFS-------LNKDPGK 146 (164)
Q Consensus 76 ~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~-~p~i~g~-~~v~~~~~~~~-------~~~~~~~ 146 (164)
+++.+.||+++.+.. ..++++. .....||+|++|||+++. .++++|. +.+++..+.+. ....+++
T Consensus 595 e~l~~~GVe~~~g~~-----~d~~ve~-l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~ 668 (1012)
T TIGR03315 595 ELVKFHGVEFKYGCS-----PDLTVAE-LKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKH 668 (1012)
T ss_pred HHHHhcCcEEEEecc-----cceEhhh-hhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCe
Confidence 566778999987632 1122322 134579999999999854 4568875 45555433321 1235799
Q ss_pred EEEECCcHHHHHhhccc
Q psy7674 147 VLLVGASYIALECAGCD 163 (164)
Q Consensus 147 vvViGgG~~g~E~A~~l 163 (164)
|+|||||++|+|+|..+
T Consensus 669 VVVIGGGnvAmD~Ar~a 685 (1012)
T TIGR03315 669 VVVVGGGNTAMDAARAA 685 (1012)
T ss_pred EEEECCCHHHHHHHHHH
Confidence 99999999999999653
No 87
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.32 E-value=7.7e-07 Score=71.59 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=57.2
Q ss_pred hhcCceEEee-EEEEeeC--cEEEeCCeeEEEEeceEEEecCCCCCCCCCCCcccee---chhhhccCcC---CCCcEEE
Q psy7674 79 EKNKIDYFNA-KAVFVDK--HRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGI---TSDDLFSLNK---DPGKVLL 149 (164)
Q Consensus 79 ~~~gv~~~~~-~~~~~~~--~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~---~~~~~~~~~~---~~~~vvV 149 (164)
.+.++++..+ +++.+|+ +++.+.+ ..+.||+|++|||++|+.++......++ +.+++..+.. ..++++|
T Consensus 64 ~~~~i~~~~~~~v~~id~~~~~v~~~~--g~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 141 (415)
T COG0446 64 RATGIDVRTGTEVTSIDPENKVVLLDD--GEIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVV 141 (415)
T ss_pred HhhCCEEeeCCEEEEecCCCCEEEECC--CcccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEE
Confidence 3568888877 5677774 4555533 2789999999999999987611112232 3344433321 2489999
Q ss_pred ECCcHHHHHhhccc
Q psy7674 150 VGASYIALECAGCD 163 (164)
Q Consensus 150 iGgG~~g~E~A~~l 163 (164)
+|+|++|+|+|..|
T Consensus 142 vG~G~~gle~A~~~ 155 (415)
T COG0446 142 VGAGPIGLEAAEAA 155 (415)
T ss_pred ECCcHHHHHHHHHH
Confidence 99999999999876
No 88
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.31 E-value=5.7e-07 Score=80.71 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=46.1
Q ss_pred EEEeceEEEecCCCCCCCCCCCc--cceechhhhccC----c-CCCCcEEEECCcHHHHHhhccc
Q psy7674 106 TVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSL----N-KDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 106 ~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l 163 (164)
.+.||++|+|||++++.|++||. ..++++..+..+ . ..+++++|||+|++|+|+|..|
T Consensus 272 ~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L 336 (985)
T TIGR01372 272 RIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADL 336 (985)
T ss_pred EEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHH
Confidence 68999999999999999999986 566665443321 1 2358999999999999999876
No 89
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.30 E-value=7.2e-07 Score=78.95 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=44.4
Q ss_pred EEEeceEEEecCC-CCCCCCCCCc--cceechhhhccCc--------------CCCCcEEEECCcHHHHHhhc
Q psy7674 106 TVSAQNFIIAVGG-RPTYPDIPGA--HLGITSDDLFSLN--------------KDPGKVLLVGASYIALECAG 161 (164)
Q Consensus 106 ~~~~d~liiAtGs-~~~~p~i~g~--~~v~~~~~~~~~~--------------~~~~~vvViGgG~~g~E~A~ 161 (164)
...||++++|||+ +|+.+++||. +.+++..+++... ...++|+|||||++|+|+|.
T Consensus 495 ~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~Ar 567 (1028)
T PRK06567 495 DLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAAT 567 (1028)
T ss_pred hcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHH
Confidence 4679999999999 7999999997 5777766633221 12478999999999999997
No 90
>PTZ00062 glutaredoxin; Provisional
Probab=98.30 E-value=4.7e-07 Score=67.14 Aligned_cols=52 Identities=12% Similarity=0.252 Sum_probs=44.2
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceE
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVV 56 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vv 56 (164)
++-+|++.+++|..++|+.+ .+.|+.|.+.+|++|+|++||+|++||+.+.+
T Consensus 134 ~k~~L~~~~i~y~~~DI~~d---~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l 185 (204)
T PTZ00062 134 VVNMLNSSGVKYETYNIFED---PDLREELKVYSNWPTYPQLYVNGELIGGHDII 185 (204)
T ss_pred HHHHHHHcCCCEEEEEcCCC---HHHHHHHHHHhCCCCCCeEEECCEEEcChHHH
Confidence 34578888999999988865 67899999999999999999999999966543
No 91
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.29 E-value=9.2e-07 Score=54.77 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=42.3
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCC
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN 53 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d 53 (164)
++.+|++.+++|+.++++.. .+.++.+.+++|..++|++|+++++||+-
T Consensus 17 a~~~L~~~gi~~~~~di~~~---~~~~~el~~~~g~~~vP~v~i~~~~iGg~ 65 (73)
T cd03027 17 VRLFLREKGLPYVEINIDIF---PERKAELEERTGSSVVPQIFFNEKLVGGL 65 (73)
T ss_pred HHHHHHHCCCceEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEeCH
Confidence 45678899999999999877 56778888899999999999999999953
No 92
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.26 E-value=1.5e-06 Score=54.88 Aligned_cols=51 Identities=51% Similarity=0.713 Sum_probs=44.9
Q ss_pred cccccCCCCCc--cEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674 2 VDIQTAPPDYN--FQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN 52 (164)
Q Consensus 2 ~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~ 52 (164)
++.+|++.+++ |++++++..++..++++++.+.+|..++|++|++|+++|+
T Consensus 15 ~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg 67 (84)
T TIGR02180 15 AKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGG 67 (84)
T ss_pred HHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcC
Confidence 35667778888 9999999988889999999999999999999999998874
No 93
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.22 E-value=2.5e-06 Score=70.38 Aligned_cols=57 Identities=26% Similarity=0.338 Sum_probs=43.8
Q ss_pred EEeceEEEecC--CCCCCCCCCCcc----ceechhhhccC-cCCCCcEEEECCcHHHHHhhccc
Q psy7674 107 VSAQNFIIAVG--GRPTYPDIPGAH----LGITSDDLFSL-NKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 107 ~~~d~liiAtG--s~~~~p~i~g~~----~v~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l 163 (164)
+.+|.||+||| +.|.+|.++|.+ .++.+.+.... .-.+|+|+|||+|++|+++|..|
T Consensus 131 ~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l 194 (443)
T COG2072 131 LTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPEL 194 (443)
T ss_pred EecCEEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHH
Confidence 77999999999 578889999872 24444444333 33579999999999999998766
No 94
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.21 E-value=1.9e-06 Score=54.04 Aligned_cols=49 Identities=22% Similarity=0.469 Sum_probs=41.3
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCC
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN 53 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d 53 (164)
++.+|++.++.|+.++++.. .+.++.+.+++|+.++|++|++|+++|+-
T Consensus 15 a~~~L~~~~i~~~~~di~~~---~~~~~~~~~~~g~~~vP~i~i~g~~igg~ 63 (79)
T TIGR02181 15 AKALLSSKGVTFTEIRVDGD---PALRDEMMQRSGRRTVPQIFIGDVHVGGC 63 (79)
T ss_pred HHHHHHHcCCCcEEEEecCC---HHHHHHHHHHhCCCCcCEEEECCEEEcCh
Confidence 45678899999999999877 56677788889999999999999988843
No 95
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.20 E-value=9.7e-07 Score=64.49 Aligned_cols=76 Identities=30% Similarity=0.515 Sum_probs=53.6
Q ss_pred HHhhcCceEEe-eEEEEee--CcEE-----E----eCCeeEEEEeceEEEecCCCCCCCCCCCc------cceechhhhc
Q psy7674 77 ELEKNKIDYFN-AKAVFVD--KHRV-----K----FAGEERTVSAQNFIIAVGGRPTYPDIPGA------HLGITSDDLF 138 (164)
Q Consensus 77 ~l~~~gv~~~~-~~~~~~~--~~~v-----~----v~~~~~~~~~d~liiAtGs~~~~p~i~g~------~~v~~~~~~~ 138 (164)
.++..+++++. .++..++ .+.+ . ..++...+.||++|+|||++|+.|++||. ..+.++++++
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~ 146 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFL 146 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHH
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccc
Confidence 34678999944 4666664 2321 1 13334789999999999999999999984 2345667777
Q ss_pred cCcCCCCcEEEECC
Q psy7674 139 SLNKDPGKVLLVGA 152 (164)
Q Consensus 139 ~~~~~~~~vvViGg 152 (164)
.....+++++|||-
T Consensus 147 ~~~~~~~~v~VvG~ 160 (201)
T PF07992_consen 147 ELLESPKRVAVVGT 160 (201)
T ss_dssp THSSTTSEEEEEST
T ss_pred cccccccccccccc
Confidence 66666779999994
No 96
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.19 E-value=2.2e-06 Score=53.87 Aligned_cols=51 Identities=43% Similarity=0.552 Sum_probs=45.7
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN 52 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~ 52 (164)
++.+|++.++.|++++++..++..+.++.+.+++|..++|++|++|+++|+
T Consensus 16 ~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg 66 (82)
T cd03419 16 AKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGG 66 (82)
T ss_pred HHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcC
Confidence 456788889999999999998888889999999999999999999998874
No 97
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.16 E-value=1.6e-07 Score=61.70 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=51.4
Q ss_pred ecCCceEEEec-----cCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC
Q psy7674 50 IDNNSVVIFSK-----SWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 50 ig~d~vvv~~~-----~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~ 124 (164)
+..+.++||++ +|||||.+++ +.|+++|+++. .+.++.+ . -..+.+.--|| .+.+|.
T Consensus 9 i~~~~Vvvf~kg~~~~~~Cp~C~~ak-----~lL~~~~i~~~----------~~di~~~-~-~~~~~l~~~tg-~~tvP~ 70 (97)
T TIGR00365 9 IKENPVVLYMKGTPQFPQCGFSARAV-----QILKACGVPFA----------YVNVLED-P-EIRQGIKEYSN-WPTIPQ 70 (97)
T ss_pred hccCCEEEEEccCCCCCCCchHHHHH-----HHHHHcCCCEE----------EEECCCC-H-HHHHHHHHHhC-CCCCCE
Confidence 55678999998 8999999999 89999999983 3444221 1 12233333355 446776
Q ss_pred --CCCccceechhhhccCcCC
Q psy7674 125 --IPGAHLGITSDDLFSLNKD 143 (164)
Q Consensus 125 --i~g~~~v~~~~~~~~~~~~ 143 (164)
+.| +.+++++++..+.+.
T Consensus 71 vfi~g-~~iGG~ddl~~l~~~ 90 (97)
T TIGR00365 71 LYVKG-EFVGGCDIIMEMYQS 90 (97)
T ss_pred EEECC-EEEeChHHHHHHHHC
Confidence 355 888999998876543
No 98
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.14 E-value=2.5e-06 Score=60.09 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=40.7
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCC----CCcceEEeeceEecCCc
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQ----KTVPNIFIHGKHIDNNS 54 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~----~~vp~v~i~~~~ig~d~ 54 (164)
++.+|++.+++|..++|+.+ ++.+++|.+++|. .++|+|||+|++||+.+
T Consensus 22 ak~iL~~~~V~~~e~DVs~~---~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~d 75 (147)
T cd03031 22 VRAILESFRVKFDERDVSMD---SGFREELRELLGAELKAVSLPRVFVDGRYLGGAE 75 (147)
T ss_pred HHHHHHHCCCcEEEEECCCC---HHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHH
Confidence 56788999999999888876 6666667776665 89999999999999554
No 99
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.13 E-value=3.6e-06 Score=69.91 Aligned_cols=83 Identities=14% Similarity=0.230 Sum_probs=54.2
Q ss_pred HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC-CCCCCCc--cceechhh--------hccCc--
Q psy7674 75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT-YPDIPGA--HLGITSDD--------LFSLN-- 141 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~-~p~i~g~--~~v~~~~~--------~~~~~-- 141 (164)
.+++++.|++++.++... +.+.+++ ....||++++|||+.+. .+++||. +++++.-+ +..+.
T Consensus 198 ~~~~~~~Gv~~~~~~~v~---~~~~~~~--~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~ 272 (467)
T TIGR01318 198 REIFTAMGIEFHLNCEVG---RDISLDD--LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPES 272 (467)
T ss_pred HHHHHHCCCEEECCCEeC---CccCHHH--HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCcc
Confidence 466788899998764321 1122222 23479999999999875 4678886 45554321 11111
Q ss_pred -------CCCCcEEEECCcHHHHHhhcc
Q psy7674 142 -------KDPGKVLLVGASYIALECAGC 162 (164)
Q Consensus 142 -------~~~~~vvViGgG~~g~E~A~~ 162 (164)
...++++|||||++|+|+|..
T Consensus 273 ~~~~~~~~~gk~VvVIGgG~~a~d~A~~ 300 (467)
T TIGR01318 273 PEEPLIDVEGKRVVVLGGGDTAMDCVRT 300 (467)
T ss_pred ccccccccCCCEEEEECCcHHHHHHHHH
Confidence 135899999999999999865
No 100
>PRK10638 glutaredoxin 3; Provisional
Probab=98.09 E-value=4.1e-06 Score=53.17 Aligned_cols=49 Identities=29% Similarity=0.479 Sum_probs=41.1
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCC
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN 53 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d 53 (164)
+..+|++.++.|..++++.. .+.++.+.+++|..++|++|++|+++|+-
T Consensus 18 a~~~L~~~gi~y~~~dv~~~---~~~~~~l~~~~g~~~vP~i~~~g~~igG~ 66 (83)
T PRK10638 18 AKALLNSKGVSFQEIPIDGD---AAKREEMIKRSGRTTVPQIFIDAQHIGGC 66 (83)
T ss_pred HHHHHHHcCCCcEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEeCH
Confidence 34578889999999999876 55677788899999999999999988843
No 101
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.07 E-value=5e-06 Score=51.43 Aligned_cols=49 Identities=22% Similarity=0.457 Sum_probs=38.9
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCC-CcceEEeeceEecCC
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQK-TVPNIFIHGKHIDNN 53 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~-~vp~v~i~~~~ig~d 53 (164)
++.+|++.+++|+.++|+.+ .+.++.+.+..|.. ++|++|++|+++|+-
T Consensus 16 ak~~L~~~~i~~~~i~i~~~---~~~~~~~~~~~~~~~~vP~v~i~g~~igg~ 65 (75)
T cd03418 16 AKALLDKKGVDYEEIDVDGD---PALREEMINRSGGRRTVPQIFIGDVHIGGC 65 (75)
T ss_pred HHHHHHHCCCcEEEEECCCC---HHHHHHHHHHhCCCCccCEEEECCEEEeCh
Confidence 45678889999999999876 55555666667877 999999999988843
No 102
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.05 E-value=1.2e-05 Score=67.73 Aligned_cols=64 Identities=27% Similarity=0.346 Sum_probs=41.1
Q ss_pred CCeeEEEEeceEEEecCC--CCCCCC--CCCcc----ceechhhhccCc-CCCCcEEEECCcHHHHHhhcccC
Q psy7674 101 AGEERTVSAQNFIIAVGG--RPTYPD--IPGAH----LGITSDDLFSLN-KDPGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 101 ~~~~~~~~~d~liiAtGs--~~~~p~--i~g~~----~v~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~ 164 (164)
++..+...||++++|||- .|.+|. +||.+ .+..+.+-.... -..|+|+|||+|.+|+++|..|+
T Consensus 131 ~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~ 203 (531)
T PF00743_consen 131 DGKEETEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELS 203 (531)
T ss_dssp TTEEEEEEECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHT
T ss_pred CCeEEEEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHH
Confidence 343456679999999995 567774 78862 344444433322 24689999999999999998763
No 103
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.01 E-value=4e-06 Score=66.94 Aligned_cols=62 Identities=27% Similarity=0.350 Sum_probs=36.1
Q ss_pred CeeEEEEeceEEEecCCCCCCCCC-C---CccceechhhhccC---cCCCCcEEEECCcHHHHHhhccc
Q psy7674 102 GEERTVSAQNFIIAVGGRPTYPDI-P---GAHLGITSDDLFSL---NKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 102 ~~~~~~~~d~liiAtGs~~~~p~i-~---g~~~v~~~~~~~~~---~~~~~~vvViGgG~~g~E~A~~l 163 (164)
++...+.++.||+|||.+|.+|.. . +...++.+.+.+.. ....++|+|||||-+|.|++..|
T Consensus 141 g~~~~~~ar~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L 209 (341)
T PF13434_consen 141 GDGETYRARNVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDL 209 (341)
T ss_dssp S-EEEEEESEEEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHH
T ss_pred CCeeEEEeCeEEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHH
Confidence 445789999999999999999873 2 22456655544332 33568999999999999998765
No 104
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.99 E-value=4.7e-07 Score=58.58 Aligned_cols=75 Identities=24% Similarity=0.365 Sum_probs=51.0
Q ss_pred ecCCceEEEec-----cCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC
Q psy7674 50 IDNNSVVIFSK-----SWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 50 ig~d~vvv~~~-----~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~ 124 (164)
+..+.++||++ +|||||..++ +.|++.+++|. .+.++.+ ....+.+.--|| +..+|.
T Consensus 5 i~~~~vvvf~k~~~~~~~Cp~C~~ak-----~~L~~~~i~y~----------~idv~~~--~~~~~~l~~~~g-~~tvP~ 66 (90)
T cd03028 5 IKENPVVLFMKGTPEEPRCGFSRKVV-----QILNQLGVDFG----------TFDILED--EEVRQGLKEYSN-WPTFPQ 66 (90)
T ss_pred hccCCEEEEEcCCCCCCCCcHHHHHH-----HHHHHcCCCeE----------EEEcCCC--HHHHHHHHHHhC-CCCCCE
Confidence 55678999998 5999999999 89999999883 3444221 112333444456 445676
Q ss_pred --CCCccceechhhhccCcCC
Q psy7674 125 --IPGAHLGITSDDLFSLNKD 143 (164)
Q Consensus 125 --i~g~~~v~~~~~~~~~~~~ 143 (164)
+.| +.+++++++..+.+.
T Consensus 67 vfi~g-~~iGG~~~l~~l~~~ 86 (90)
T cd03028 67 LYVNG-ELVGGCDIVKEMHES 86 (90)
T ss_pred EEECC-EEEeCHHHHHHHHHc
Confidence 344 788899888776543
No 105
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.96 E-value=6e-07 Score=55.64 Aligned_cols=71 Identities=34% Similarity=0.617 Sum_probs=46.5
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC--CCCccce
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD--IPGAHLG 131 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~--i~g~~~v 131 (164)
.+++|++++||+|..++ .+|+++++++. .+.++.+ .-..+.+.--+|.+..+|. +.| +.+
T Consensus 1 ~i~ly~~~~Cp~C~~ak-----~~L~~~~i~~~----------~i~i~~~--~~~~~~~~~~~~~~~~vP~v~i~g-~~i 62 (75)
T cd03418 1 KVEIYTKPNCPYCVRAK-----ALLDKKGVDYE----------EIDVDGD--PALREEMINRSGGRRTVPQIFIGD-VHI 62 (75)
T ss_pred CEEEEeCCCChHHHHHH-----HHHHHCCCcEE----------EEECCCC--HHHHHHHHHHhCCCCccCEEEECC-EEE
Confidence 37899999999999999 88999999883 3444221 0111223333454435666 345 788
Q ss_pred echhhhccCcC
Q psy7674 132 ITSDDLFSLNK 142 (164)
Q Consensus 132 ~~~~~~~~~~~ 142 (164)
++++++.++.+
T Consensus 63 gg~~~~~~~~~ 73 (75)
T cd03418 63 GGCDDLYALER 73 (75)
T ss_pred eChHHHHHHHh
Confidence 88888876543
No 106
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.90 E-value=1.6e-06 Score=53.49 Aligned_cols=66 Identities=35% Similarity=0.601 Sum_probs=42.3
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCC--CCccce
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDI--PGAHLG 131 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i--~g~~~v 131 (164)
.++||+++|||||..++ +.|++.|+++. .+.++.+ . ..+.+...+|. ..+|.+ .| +.+
T Consensus 2 ~v~lys~~~Cp~C~~ak-----~~L~~~~i~~~----------~~~v~~~--~-~~~~~~~~~g~-~~vP~ifi~g-~~i 61 (72)
T cd03029 2 SVSLFTKPGCPFCARAK-----AALQENGISYE----------EIPLGKD--I-TGRSLRAVTGA-MTVPQVFIDG-ELI 61 (72)
T ss_pred eEEEEECCCCHHHHHHH-----HHHHHcCCCcE----------EEECCCC--h-hHHHHHHHhCC-CCcCeEEECC-EEE
Confidence 58999999999999999 88999999983 3444321 1 12222222443 356663 34 667
Q ss_pred echhhhcc
Q psy7674 132 ITSDDLFS 139 (164)
Q Consensus 132 ~~~~~~~~ 139 (164)
++++++..
T Consensus 62 gg~~~l~~ 69 (72)
T cd03029 62 GGSDDLEK 69 (72)
T ss_pred eCHHHHHH
Confidence 77776643
No 107
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.89 E-value=1.1e-05 Score=50.78 Aligned_cols=48 Identities=31% Similarity=0.523 Sum_probs=37.6
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCC
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN 53 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d 53 (164)
++.+|++.+++|+.++++..++. + .+.+++|..++|++|++|+++++-
T Consensus 24 ak~~L~~~gi~y~~idi~~~~~~---~-~~~~~~g~~~vP~i~i~g~~igG~ 71 (79)
T TIGR02190 24 AKATLKEKGYDFEEIPLGNDARG---R-SLRAVTGATTVPQVFIGGKLIGGS 71 (79)
T ss_pred HHHHHHHcCCCcEEEECCCChHH---H-HHHHHHCCCCcCeEEECCEEEcCH
Confidence 45678899999999999876433 2 345568999999999999988743
No 108
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.88 E-value=1.6e-05 Score=48.96 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=37.3
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN 52 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~ 52 (164)
++-+|++.+++|+.++++..++ .+.+.+++|..++|++|++|+++|+
T Consensus 17 ak~~L~~~~i~~~~~~v~~~~~----~~~~~~~~g~~~vP~ifi~g~~igg 63 (72)
T cd03029 17 AKAALQENGISYEEIPLGKDIT----GRSLRAVTGAMTVPQVFIDGELIGG 63 (72)
T ss_pred HHHHHHHcCCCcEEEECCCChh----HHHHHHHhCCCCcCeEEECCEEEeC
Confidence 3457788899999999987642 2356667899999999999998874
No 109
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.87 E-value=1.7e-06 Score=53.57 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=46.5
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC--CCCccce
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD--IPGAHLG 131 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~--i~g~~~v 131 (164)
++++|++++||+|.+++ .+|++.|+++. .+.++. .....+.+.-.+|. ..+|. +.| +.+
T Consensus 2 ~v~ly~~~~C~~C~ka~-----~~L~~~gi~~~----------~~di~~--~~~~~~el~~~~g~-~~vP~v~i~~-~~i 62 (73)
T cd03027 2 RVTIYSRLGCEDCTAVR-----LFLREKGLPYV----------EINIDI--FPERKAELEERTGS-SVVPQIFFNE-KLV 62 (73)
T ss_pred EEEEEecCCChhHHHHH-----HHHHHCCCceE----------EEECCC--CHHHHHHHHHHhCC-CCcCEEEECC-EEE
Confidence 57899999999999999 89999999983 344422 11122233333554 34565 355 888
Q ss_pred echhhhccCc
Q psy7674 132 ITSDDLFSLN 141 (164)
Q Consensus 132 ~~~~~~~~~~ 141 (164)
++.+++.++.
T Consensus 63 Gg~~~~~~~~ 72 (73)
T cd03027 63 GGLTDLKSLE 72 (73)
T ss_pred eCHHHHHhhc
Confidence 8999887654
No 110
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.86 E-value=3.3e-05 Score=66.59 Aligned_cols=83 Identities=18% Similarity=0.282 Sum_probs=53.0
Q ss_pred HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC-CCCCCCc--cceech--------hhhccCc--
Q psy7674 75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT-YPDIPGA--HLGITS--------DDLFSLN-- 141 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~-~p~i~g~--~~v~~~--------~~~~~~~-- 141 (164)
.+++++.|++++.+.... +.++++. ....||++++|||+.+. .+++||. ..+++. .++..+.
T Consensus 367 ~~~~~~~Gv~~~~~~~v~---~~~~~~~--l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~ 441 (639)
T PRK12809 367 REIFTAMGIDFHLNCEIG---RDITFSD--LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPES 441 (639)
T ss_pred HHHHHHCCeEEEcCCccC---CcCCHHH--HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccc
Confidence 466788899998764321 1122222 23579999999999753 5668875 344432 1222111
Q ss_pred -------CCCCcEEEECCcHHHHHhhcc
Q psy7674 142 -------KDPGKVLLVGASYIALECAGC 162 (164)
Q Consensus 142 -------~~~~~vvViGgG~~g~E~A~~ 162 (164)
...++++|||||++|+++|..
T Consensus 442 ~~~~~~~~~gk~vvViGgG~~a~d~a~~ 469 (639)
T PRK12809 442 EEYPLTDVEGKRVVVLGGGDTTMDCLRT 469 (639)
T ss_pred cccccccCCCCeEEEECCcHHHHHHHHH
Confidence 135899999999999998854
No 111
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.85 E-value=1e-06 Score=55.34 Aligned_cols=70 Identities=29% Similarity=0.627 Sum_probs=45.7
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC--CCCcccee
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD--IPGAHLGI 132 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~--i~g~~~v~ 132 (164)
++||++++||+|..++ .+|+++|+++. .+.++.+ ....+.+.-.+| ...+|. +.| +.++
T Consensus 1 v~ly~~~~Cp~C~~a~-----~~L~~~~i~~~----------~~di~~~--~~~~~~~~~~~g-~~~vP~i~i~g-~~ig 61 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAK-----ALLSSKGVTFT----------EIRVDGD--PALRDEMMQRSG-RRTVPQIFIGD-VHVG 61 (79)
T ss_pred CEEEecCCChhHHHHH-----HHHHHcCCCcE----------EEEecCC--HHHHHHHHHHhC-CCCcCEEEECC-EEEc
Confidence 5789999999999999 88999999873 3444221 111122222355 455666 344 7788
Q ss_pred chhhhccCcCC
Q psy7674 133 TSDDLFSLNKD 143 (164)
Q Consensus 133 ~~~~~~~~~~~ 143 (164)
+++++.++.+.
T Consensus 62 g~~~~~~~~~~ 72 (79)
T TIGR02181 62 GCDDLYALDRE 72 (79)
T ss_pred ChHHHHHHHHc
Confidence 88888766543
No 112
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.75 E-value=3.3e-05 Score=66.73 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=51.8
Q ss_pred HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC-CCCCCCc--cceechh--------hhccC---
Q psy7674 75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT-YPDIPGA--HLGITSD--------DLFSL--- 140 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~-~p~i~g~--~~v~~~~--------~~~~~--- 140 (164)
.+++++.|++++.++.... .+++.. ....||++++|||+.+. .+++||. ..+++.- .+..+
T Consensus 384 ~~~~~~~Gv~~~~~~~v~~---~i~~~~--~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~ 458 (654)
T PRK12769 384 REIFSAMGIEFELNCEVGK---DISLES--LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEEL 458 (654)
T ss_pred HHHHHHCCeEEECCCEeCC---cCCHHH--HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccc
Confidence 4567788999887643211 122211 12479999999999654 5677775 3444321 11111
Q ss_pred ------cCCCCcEEEECCcHHHHHhhcc
Q psy7674 141 ------NKDPGKVLLVGASYIALECAGC 162 (164)
Q Consensus 141 ------~~~~~~vvViGgG~~g~E~A~~ 162 (164)
....++|+|||||++|+|+|..
T Consensus 459 ~~~~~~~~~gk~VvVIGgG~~a~d~A~~ 486 (654)
T PRK12769 459 PEEPFINTAGLNVVVLGGGDTAMDCVRT 486 (654)
T ss_pred cccccccCCCCeEEEECCcHHHHHHHHH
Confidence 1135799999999999999864
No 113
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.74 E-value=4.2e-05 Score=46.18 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=39.5
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN 52 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~ 52 (164)
+..+|++.+++|..++++.. .+.++.+.+++|..++|++|++++++++
T Consensus 16 ~~~~L~~~~i~~~~~di~~~---~~~~~~l~~~~~~~~~P~~~~~~~~igg 63 (72)
T cd02066 16 AKRLLESLGIEFEEIDILED---GELREELKELSGWPTVPQIFINGEFIGG 63 (72)
T ss_pred HHHHHHHcCCcEEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEec
Confidence 45678888888888888766 4477888888999999999999998874
No 114
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.72 E-value=4.8e-05 Score=48.39 Aligned_cols=41 Identities=32% Similarity=0.671 Sum_probs=29.8
Q ss_pred CCCccEEEEecCCCChhHHHHHHHhhcCC--CCcceEEeeceEecC
Q psy7674 9 PDYNFQVVELDKLPNGAQIQTALFERTGQ--KTVPNIFIHGKHIDN 52 (164)
Q Consensus 9 ~~~~~~~~~i~~~~~~~~~~~~l~~~~g~--~~vp~v~i~~~~ig~ 52 (164)
.++.+..++++.. +.+ ++.+.+++|+ .++|++||+|+++|+
T Consensus 29 ~~i~~~~idi~~~--~~~-~~el~~~~~~~~~~vP~ifi~g~~igg 71 (85)
T PRK11200 29 DDFDYRYVDIHAE--GIS-KADLEKTVGKPVETVPQIFVDQKHIGG 71 (85)
T ss_pred cCCcEEEEECCCC--hHH-HHHHHHHHCCCCCcCCEEEECCEEEcC
Confidence 5777777777654 333 3446667776 899999999998873
No 115
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.67 E-value=4.3e-06 Score=53.55 Aligned_cols=74 Identities=28% Similarity=0.397 Sum_probs=41.8
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC-CCCCCCC--CCccce
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDI--PGAHLG 131 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs-~~~~p~i--~g~~~v 131 (164)
++||+++|||||..++ +.|++.+++.- + +.-..+.++.+ ......+.-.+|. ...+|.+ .| +.+
T Consensus 2 V~vys~~~Cp~C~~ak-----~~L~~~~~~~~-~----i~~~~idi~~~--~~~~~~l~~~~g~~~~tVP~ifi~g-~~i 68 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAK-----QLAEKLAIERA-D----FEFRYIDIHAE--GISKADLEKTVGKPVETVPQIFVDE-KHV 68 (86)
T ss_pred EEEEeCCCCccHHHHH-----HHHHHhCcccC-C----CcEEEEECCCC--HHHHHHHHHHhCCCCCCcCeEEECC-EEe
Confidence 6899999999999999 78887754320 0 00022333211 1011123334553 1346663 44 788
Q ss_pred echhhhccCc
Q psy7674 132 ITSDDLFSLN 141 (164)
Q Consensus 132 ~~~~~~~~~~ 141 (164)
++++|+.++.
T Consensus 69 gG~~dl~~~~ 78 (86)
T TIGR02183 69 GGCTDFEQLV 78 (86)
T ss_pred cCHHHHHHHH
Confidence 8888887654
No 116
>PRK10638 glutaredoxin 3; Provisional
Probab=97.65 E-value=4.1e-06 Score=53.19 Aligned_cols=71 Identities=28% Similarity=0.547 Sum_probs=46.9
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCC--CCccce
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDI--PGAHLG 131 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i--~g~~~v 131 (164)
.+++|+++|||||.+++ ..|++.|+++. .+.++.. .... +.+.--+|. ..+|.+ .| +.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~-----~~L~~~gi~y~----------~~dv~~~-~~~~-~~l~~~~g~-~~vP~i~~~g-~~i 63 (83)
T PRK10638 3 NVEIYTKATCPFCHRAK-----ALLNSKGVSFQ----------EIPIDGD-AAKR-EEMIKRSGR-TTVPQIFIDA-QHI 63 (83)
T ss_pred cEEEEECCCChhHHHHH-----HHHHHcCCCcE----------EEECCCC-HHHH-HHHHHHhCC-CCcCEEEECC-EEE
Confidence 58899999999999999 89999999983 3444321 1111 223333454 356664 44 788
Q ss_pred echhhhccCcCC
Q psy7674 132 ITSDDLFSLNKD 143 (164)
Q Consensus 132 ~~~~~~~~~~~~ 143 (164)
++++++..+...
T Consensus 64 gG~~~~~~~~~~ 75 (83)
T PRK10638 64 GGCDDLYALDAR 75 (83)
T ss_pred eCHHHHHHHHHc
Confidence 888888766543
No 117
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.64 E-value=6.7e-05 Score=47.98 Aligned_cols=40 Identities=28% Similarity=0.643 Sum_probs=27.3
Q ss_pred CccEEEEecCCCChhHHHHHHHhhcCC--CCcceEEeeceEecCC
Q psy7674 11 YNFQVVELDKLPNGAQIQTALFERTGQ--KTVPNIFIHGKHIDNN 53 (164)
Q Consensus 11 ~~~~~~~i~~~~~~~~~~~~l~~~~g~--~~vp~v~i~~~~ig~d 53 (164)
+.|..++++ .++... +.+.+++|+ ++||++|++++++|+.
T Consensus 30 i~~~~idi~--~~~~~~-~~l~~~~g~~~~tVP~ifi~g~~igG~ 71 (86)
T TIGR02183 30 FEFRYIDIH--AEGISK-ADLEKTVGKPVETVPQIFVDEKHVGGC 71 (86)
T ss_pred CcEEEEECC--CCHHHH-HHHHHHhCCCCCCcCeEEECCEEecCH
Confidence 445555554 444443 447777887 8999999999988854
No 118
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=2.7e-05 Score=50.66 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=40.3
Q ss_pred CCCC-CccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceE
Q psy7674 7 APPD-YNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVV 56 (164)
Q Consensus 7 ~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vv 56 (164)
...| ++|.+++|=.+ +++|+.|.+-+...|.|+.+|+|++||+.+++
T Consensus 41 ~~~g~v~~~~vnVL~d---~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv 88 (105)
T COG0278 41 SACGVVDFAYVDVLQD---PEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIV 88 (105)
T ss_pred HHcCCcceeEEeeccC---HHHHhccHhhcCCCCCceeeECCEEeccHHHH
Confidence 3445 77777777776 89999999999999999999999999988866
No 119
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.64 E-value=3.7e-05 Score=62.94 Aligned_cols=52 Identities=25% Similarity=0.329 Sum_probs=41.3
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHH-----HHhhcCCCCcceEEeeceEecCC
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTA-----LFERTGQKTVPNIFIHGKHIDNN 53 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----l~~~~g~~~vp~v~i~~~~ig~d 53 (164)
++.+|++.|++|++++|+.++...++++. |.+.+|+++||+|||++++||+-
T Consensus 18 aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf 74 (410)
T PRK12759 18 AKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGY 74 (410)
T ss_pred HHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCc
Confidence 46789999999999999977655555444 33457999999999999988833
No 120
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.57 E-value=4.9e-05 Score=47.76 Aligned_cols=68 Identities=34% Similarity=0.587 Sum_probs=44.4
Q ss_pred CCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC--CCCcc
Q psy7674 52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD--IPGAH 129 (164)
Q Consensus 52 ~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~--i~g~~ 129 (164)
.+.+++|+++|||||.+++ ..|++.|+++. .+.++.+ .....+...+|. ..+|. +.| +
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak-----~~L~~~gi~y~----------~idi~~~---~~~~~~~~~~g~-~~vP~i~i~g-~ 66 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAK-----ATLKEKGYDFE----------EIPLGND---ARGRSLRAVTGA-TTVPQVFIGG-K 66 (79)
T ss_pred CCCEEEEECCCCHhHHHHH-----HHHHHcCCCcE----------EEECCCC---hHHHHHHHHHCC-CCcCeEEECC-E
Confidence 5679999999999999999 88999999983 3444321 011122223553 34666 344 6
Q ss_pred ceechhhhcc
Q psy7674 130 LGITSDDLFS 139 (164)
Q Consensus 130 ~v~~~~~~~~ 139 (164)
.+++++++..
T Consensus 67 ~igG~~~l~~ 76 (79)
T TIGR02190 67 LIGGSDELEA 76 (79)
T ss_pred EEcCHHHHHH
Confidence 7777777653
No 121
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.55 E-value=6.4e-06 Score=51.92 Aligned_cols=71 Identities=35% Similarity=0.563 Sum_probs=41.7
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCce--EEeeEEEEeeCcEEEeCCee-EEEEeceEEEecCCCCCCCCC--CCcc
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKID--YFNAKAVFVDKHRVKFAGEE-RTVSAQNFIIAVGGRPTYPDI--PGAH 129 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~--~~~~~~~~~~~~~v~v~~~~-~~~~~d~liiAtGs~~~~p~i--~g~~ 129 (164)
+++|+++|||+|...+ ..|.+.+++ + ..+.++... .....+++.--+| .+.+|.+ .| +
T Consensus 1 V~~f~~~~Cp~C~~~~-----~~L~~~~i~~~~----------~~~~v~~~~~~~~~~~~l~~~~g-~~~vP~v~i~g-~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAK-----EILAKLNVKPAY----------EVVELDQLSNGSEIQDYLEEITG-QRTVPNIFING-K 63 (84)
T ss_pred CEEEECCCChhHHHHH-----HHHHHcCCCCCC----------EEEEeeCCCChHHHHHHHHHHhC-CCCCCeEEECC-E
Confidence 5789999999999999 888888866 3 122221100 0011122222234 4456663 44 6
Q ss_pred ceechhhhccCcC
Q psy7674 130 LGITSDDLFSLNK 142 (164)
Q Consensus 130 ~v~~~~~~~~~~~ 142 (164)
.+.+++++.++.+
T Consensus 64 ~igg~~~~~~~~~ 76 (84)
T TIGR02180 64 FIGGCSDLLALYK 76 (84)
T ss_pred EEcCHHHHHHHHH
Confidence 7778888776544
No 122
>PTZ00062 glutaredoxin; Provisional
Probab=97.46 E-value=1.3e-05 Score=59.46 Aligned_cols=101 Identities=18% Similarity=0.316 Sum_probs=63.2
Q ss_pred ChhHHHHHHHhhcCCCCcce--EEeeceEecCCceEEEec-----cCCcccccccchhhHHHHhhcCceEEeeEEEEeeC
Q psy7674 23 NGAQIQTALFERTGQKTVPN--IFIHGKHIDNNSVVIFSK-----SWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDK 95 (164)
Q Consensus 23 ~~~~~~~~l~~~~g~~~vp~--v~i~~~~ig~d~vvv~~~-----~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~ 95 (164)
+.+++...+.+..+...... -++. +.|....+++|+| ++||||+..+ +.|++.+|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~li~~~~Vvvf~Kg~~~~p~C~~C~~~k-----~~L~~~~i~y~--------- 146 (204)
T PTZ00062 82 NTSTLVSFIRGWAQKGSSEDTVEKIE-RLIRNHKILLFMKGSKTFPFCRFSNAVV-----NMLNSSGVKYE--------- 146 (204)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHH-HHHhcCCEEEEEccCCCCCCChhHHHHH-----HHHHHcCCCEE---------
Confidence 45666666666544333211 1222 2366899999999 5899999999 89999999983
Q ss_pred cEEEeCCeeEEEEeceEEEecCCCCCCCC--CCCccceechhhhccCcCC
Q psy7674 96 HRVKFAGEERTVSAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKD 143 (164)
Q Consensus 96 ~~v~v~~~~~~~~~d~liiAtGs~~~~p~--i~g~~~v~~~~~~~~~~~~ 143 (164)
.+.++.+ ... .+.+.--+| .+.+|. |.| +++++++++..+.+.
T Consensus 147 -~~DI~~d-~~~-~~~l~~~sg-~~TvPqVfI~G-~~IGG~d~l~~l~~~ 191 (204)
T PTZ00062 147 -TYNIFED-PDL-REELKVYSN-WPTYPQLYVNG-ELIGGHDIIKELYES 191 (204)
T ss_pred -EEEcCCC-HHH-HHHHHHHhC-CCCCCeEEECC-EEEcChHHHHHHHHc
Confidence 3444221 111 223333355 456777 455 889999988876543
No 123
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.44 E-value=0.00012 Score=45.02 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=35.7
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece-Eec
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK-HID 51 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~-~ig 51 (164)
++.+|++.++.|+.++|+.+ .+.++.+.+. |..++|.++++|. +++
T Consensus 15 ak~~L~~~~i~~~~~di~~~---~~~~~~~~~~-g~~~vP~v~~~g~~~~~ 61 (72)
T TIGR02194 15 TKKALEEHGIAFEEINIDEQ---PEAIDYVKAQ-GFRQVPVIVADGDLSWS 61 (72)
T ss_pred HHHHHHHCCCceEEEECCCC---HHHHHHHHHc-CCcccCEEEECCCcEEe
Confidence 45678899999999999877 4556666654 9999999999774 444
No 124
>KOG1399|consensus
Probab=97.29 E-value=0.00042 Score=57.31 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=40.5
Q ss_pred EEEEeceEEEecCCC--CCCCCCCCc--c----ceechhhhccCc-CCCCcEEEECCcHHHHHhhcc
Q psy7674 105 RTVSAQNFIIAVGGR--PTYPDIPGA--H----LGITSDDLFSLN-KDPGKVLLVGASYIALECAGC 162 (164)
Q Consensus 105 ~~~~~d~liiAtGs~--~~~p~i~g~--~----~v~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~ 162 (164)
...-||.|++|||-. |+.|.++|. + .++.+.+-...+ -..++|+|||.|.+|.++|.-
T Consensus 138 ~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d 204 (448)
T KOG1399|consen 138 EEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLD 204 (448)
T ss_pred eEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHH
Confidence 578899999999976 788888872 1 122222222111 234899999999999999865
No 125
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.24 E-value=0.00014 Score=59.56 Aligned_cols=70 Identities=26% Similarity=0.430 Sum_probs=45.8
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEE------eceEEEecCCCCCCCCC-C
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVS------AQNFIIAVGGRPTYPDI-P 126 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~------~d~liiAtGs~~~~p~i-~ 126 (164)
.++||+++|||||.++| +.|++.||++. .+.++.+..... -..+..-+|.+ .+|.| -
T Consensus 3 ~V~vys~~~Cp~C~~aK-----~~L~~~gi~~~----------~idi~~~~~~~~~~~~~~~~~~~~~~g~~-tvP~ifi 66 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAK-----SWFGANDIPFT----------QISLDDDVKRAEFYAEVNKNILLVEEHIR-TVPQIFV 66 (410)
T ss_pred cEEEEeCCCCHHHHHHH-----HHHHHCCCCeE----------EEECCCChhHHHHHHHHhhccccccCCCC-ccCeEEE
Confidence 58999999999999999 99999999983 344432111000 01244557766 46763 2
Q ss_pred Cccceechhhhcc
Q psy7674 127 GAHLGITSDDLFS 139 (164)
Q Consensus 127 g~~~v~~~~~~~~ 139 (164)
|.+++++++++..
T Consensus 67 ~~~~igGf~~l~~ 79 (410)
T PRK12759 67 GDVHIGGYDNLMA 79 (410)
T ss_pred CCEEEeCchHHHH
Confidence 3378888877754
No 126
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.22 E-value=0.00018 Score=42.58 Aligned_cols=26 Identities=46% Similarity=0.982 Sum_probs=24.3
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
+++|++++||+|..++ ++|++.|+++
T Consensus 1 V~vy~~~~C~~C~~~~-----~~L~~~~i~y 26 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAK-----EFLDEKGIPY 26 (60)
T ss_dssp EEEEESTTSHHHHHHH-----HHHHHTTBEE
T ss_pred cEEEEcCCCcCHHHHH-----HHHHHcCCee
Confidence 5899999999999999 8999999998
No 127
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.21 E-value=0.00038 Score=44.05 Aligned_cols=46 Identities=11% Similarity=0.321 Sum_probs=35.4
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID 51 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig 51 (164)
++.+|++.|+.|+.++++.. ++..+.+.. .|.+++|.+++++.++.
T Consensus 17 ak~~L~~~gI~~~~idi~~~---~~~~~~~~~-~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 17 TKRAMESRGFDFEMINVDRV---PEAAETLRA-QGFRQLPVVIAGDLSWS 62 (81)
T ss_pred HHHHHHHCCCceEEEECCCC---HHHHHHHHH-cCCCCcCEEEECCEEEe
Confidence 56678999999999999876 444445544 59999999999986443
No 128
>KOG1800|consensus
Probab=97.19 E-value=0.00053 Score=55.12 Aligned_cols=124 Identities=27% Similarity=0.384 Sum_probs=73.5
Q ss_pred cCCCCcceEEeece-Eec------------CCceEEEeccCCccccc----------ccc--hhhHHHHhhcCceEEeeE
Q psy7674 35 TGQKTVPNIFIHGK-HID------------NNSVVIFSKSWCPFCTK----------AKE--NNYEKELEKNKIDYFNAK 89 (164)
Q Consensus 35 ~g~~~vp~v~i~~~-~ig------------~d~vvv~~~~~cp~~~~----------~~~--~~~~~~l~~~gv~~~~~~ 89 (164)
+-+.+-|+|-|-|. ..| .-.+.||.+.--||-.. .|+ ..+...++.....|+-+.
T Consensus 15 s~qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv 94 (468)
T KOG1800|consen 15 STQSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNV 94 (468)
T ss_pred hhccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecc
Confidence 35666788887663 333 34677788755552211 111 123344444555554321
Q ss_pred EEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCCCCCc--cceechhhhccC------------cCCCCcEEEECCcH
Q psy7674 90 AVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGA--HLGITSDDLFSL------------NKDPGKVLLVGASY 154 (164)
Q Consensus 90 ~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~i~g~--~~v~~~~~~~~~------------~~~~~~vvViGgG~ 154 (164)
-. .+.+.+.. -.-.||.+++|.|+. ++.+.|||. .++++.++.... .-...+|+|||-|+
T Consensus 95 ~v---G~dvsl~e--L~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GN 169 (468)
T KOG1800|consen 95 KV---GRDVSLKE--LTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGN 169 (468)
T ss_pred ee---cccccHHH--HhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCc
Confidence 10 01122211 245799999999984 667889997 566665543321 12257899999999
Q ss_pred HHHHhhccc
Q psy7674 155 IALECAGCD 163 (164)
Q Consensus 155 ~g~E~A~~l 163 (164)
+++.+|..|
T Consensus 170 VAlDvARiL 178 (468)
T KOG1800|consen 170 VALDVARIL 178 (468)
T ss_pred hhhhhhhhh
Confidence 999999876
No 129
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.19 E-value=0.00019 Score=45.39 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=25.1
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
.+++|+++|||||...+ ..|++.||+|
T Consensus 2 ~v~lYt~~~Cp~C~~ak-----~~L~~~gI~~ 28 (81)
T PRK10329 2 RITIYTRNDCVQCHATK-----RAMESRGFDF 28 (81)
T ss_pred EEEEEeCCCCHhHHHHH-----HHHHHCCCce
Confidence 47899999999999999 8899999998
No 130
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.12 E-value=3.8e-05 Score=48.15 Aligned_cols=27 Identities=44% Similarity=0.903 Sum_probs=24.2
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
.+++|+++|||+|...+ ..+++.++++
T Consensus 1 ~v~~y~~~~Cp~C~~~~-----~~l~~~~~~~ 27 (82)
T cd03419 1 PVVVFSKSYCPYCKRAK-----SLLKELGVKP 27 (82)
T ss_pred CEEEEEcCCCHHHHHHH-----HHHHHcCCCc
Confidence 37899999999999999 8899998876
No 131
>KOG0911|consensus
Probab=97.09 E-value=0.0004 Score=51.69 Aligned_cols=49 Identities=14% Similarity=0.333 Sum_probs=43.7
Q ss_pred ccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceE
Q psy7674 5 QTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVV 56 (164)
Q Consensus 5 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vv 56 (164)
.|++.+++|..++|-.+ +++|+.+.+.+...|.|++||+|+++|+.+++
T Consensus 163 iL~~~nV~~~~fdIL~D---eelRqglK~fSdWPTfPQlyI~GEFiGGlDIl 211 (227)
T KOG0911|consen 163 ILQSHNVNYTIFDVLTD---EELRQGLKEFSDWPTFPQLYVKGEFIGGLDIL 211 (227)
T ss_pred HHHHcCCCeeEEeccCC---HHHHHHhhhhcCCCCccceeECCEeccCcHHH
Confidence 46778899999999888 88999999999999999999999999977755
No 132
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.02 E-value=0.0006 Score=56.56 Aligned_cols=105 Identities=19% Similarity=0.323 Sum_probs=62.5
Q ss_pred CCceEEEeccCCc-----ccc----cccc--hhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-
Q psy7674 52 NNSVVIFSKSWCP-----FCT----KAKE--NNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR- 119 (164)
Q Consensus 52 ~d~vvv~~~~~cp-----~~~----~~~~--~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~- 119 (164)
+..+++|.+..-+ |-. ..+. ....+.|++.|++|+.+..... .+++.. -.-.||+++++||+.
T Consensus 146 G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---~it~~~--L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 146 GHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---DITLEE--LLKEYDAVFLATGAGK 220 (457)
T ss_pred CCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---cCCHHH--HHHhhCEEEEeccccC
Confidence 6677777764422 211 1221 1344678888999987644322 122222 234569999999984
Q ss_pred CCCCCCCCc--cceechhhhc--------c-Cc--C----CCCcEEEECCcHHHHHhhc
Q psy7674 120 PTYPDIPGA--HLGITSDDLF--------S-LN--K----DPGKVLLVGASYIALECAG 161 (164)
Q Consensus 120 ~~~p~i~g~--~~v~~~~~~~--------~-~~--~----~~~~vvViGgG~~g~E~A~ 161 (164)
|+..++||. +.+...-+.+ . .. . ..++++|||||.+++++|.
T Consensus 221 ~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~ 279 (457)
T COG0493 221 PRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAG 279 (457)
T ss_pred CCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHH
Confidence 555678886 3554322211 1 11 1 1289999999999999984
No 133
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.97 E-value=0.0023 Score=53.50 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=17.8
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.++++|||.|++++.+|..|
T Consensus 197 ~~~vvVIG~GNVAlDvARiL 216 (506)
T PTZ00188 197 FTTSIIIGNGNVSLDIARIL 216 (506)
T ss_pred CCcEEEECCCchHHHHHHHH
Confidence 36899999999999999876
No 134
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.89 E-value=0.002 Score=52.28 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=42.0
Q ss_pred EEEEeceEEEecCCCCCCCC----CCCccceechhhhcc-CcC--CCCcEEEECCcHHHHHhhc
Q psy7674 105 RTVSAQNFIIAVGGRPTYPD----IPGAHLGITSDDLFS-LNK--DPGKVLLVGASYIALECAG 161 (164)
Q Consensus 105 ~~~~~d~liiAtGs~~~~p~----i~g~~~v~~~~~~~~-~~~--~~~~vvViGgG~~g~E~A~ 161 (164)
..+.+..||+.+|.+|.+|+ +++ +.++.+.+... ..+ ..++|.|||||-+|.|+-.
T Consensus 142 ~~y~ar~lVlg~G~~P~IP~~f~~l~~-~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~ 204 (436)
T COG3486 142 TVYRARNLVLGVGTQPYIPPCFRSLIG-ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFL 204 (436)
T ss_pred cEEEeeeEEEccCCCcCCChHHhCcCc-cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHH
Confidence 58999999999999999997 344 56776665543 222 2245999999999999754
No 135
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.88 E-value=0.00049 Score=42.27 Aligned_cols=26 Identities=35% Similarity=0.718 Sum_probs=24.1
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
+++|++++||+|..++ ++|++.|+.+
T Consensus 1 v~ly~~~~Cp~C~~ak-----~~L~~~~i~~ 26 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTK-----KALEEHGIAF 26 (72)
T ss_pred CEEEeCCCCHHHHHHH-----HHHHHCCCce
Confidence 5789999999999999 8899999998
No 136
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.87 E-value=0.00071 Score=42.93 Aligned_cols=69 Identities=30% Similarity=0.469 Sum_probs=40.9
Q ss_pred ceEEEeccCCcccccccchhhHHHHhh-----cCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCC--C
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEK-----NKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPD--I 125 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~-----~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~--i 125 (164)
.++||+++|||+|.+++ ++|++ .++.+. .+.++.+ ....+.+.-.+|-. ..+|. +
T Consensus 2 ~v~iy~~~~C~~C~~a~-----~~L~~l~~~~~~i~~~----------~idi~~~--~~~~~el~~~~~~~~~~vP~ifi 64 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAK-----ELAEKLSEERDDFDYR----------YVDIHAE--GISKADLEKTVGKPVETVPQIFV 64 (85)
T ss_pred EEEEEeCCCChhHHHHH-----HHHHhhcccccCCcEE----------EEECCCC--hHHHHHHHHHHCCCCCcCCEEEE
Confidence 47899999999999999 77777 577762 2333210 00111222234421 24565 3
Q ss_pred CCccceechhhhccC
Q psy7674 126 PGAHLGITSDDLFSL 140 (164)
Q Consensus 126 ~g~~~v~~~~~~~~~ 140 (164)
.| +.+.+.+++..+
T Consensus 65 ~g-~~igg~~~~~~~ 78 (85)
T PRK11200 65 DQ-KHIGGCTDFEAY 78 (85)
T ss_pred CC-EEEcCHHHHHHH
Confidence 45 777777776543
No 137
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.83 E-value=0.00012 Score=51.59 Aligned_cols=71 Identities=15% Similarity=0.296 Sum_probs=44.9
Q ss_pred ceEEEecc------CCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC---CCCCCC
Q psy7674 54 SVVIFSKS------WCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG---RPTYPD 124 (164)
Q Consensus 54 ~vvv~~~~------~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs---~~~~p~ 124 (164)
.++||+.+ +||||..++ ..|++++|+|. ++.++.+ ..+ .+.|--.+|. .+.+|.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak-----~iL~~~~V~~~----------e~DVs~~-~~~-~~EL~~~~g~~~~~~tvPq 63 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVR-----AILESFRVKFD----------ERDVSMD-SGF-REELRELLGAELKAVSLPR 63 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHH-----HHHHHCCCcEE----------EEECCCC-HHH-HHHHHHHhCCCCCCCCCCE
Confidence 37899998 899999999 89999999983 3444211 000 1112222333 345665
Q ss_pred --CCCccceechhhhccCcC
Q psy7674 125 --IPGAHLGITSDDLFSLNK 142 (164)
Q Consensus 125 --i~g~~~v~~~~~~~~~~~ 142 (164)
|.| +++++.+++..+.+
T Consensus 64 VFI~G-~~IGG~del~~L~e 82 (147)
T cd03031 64 VFVDG-RYLGGAEEVLRLNE 82 (147)
T ss_pred EEECC-EEEecHHHHHHHHH
Confidence 345 88888888877653
No 138
>KOG0399|consensus
Probab=96.76 E-value=0.0011 Score=59.83 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=63.1
Q ss_pred CCceEEEeccCCc-----ccccc-c-----chhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-
Q psy7674 52 NNSVVIFSKSWCP-----FCTKA-K-----ENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR- 119 (164)
Q Consensus 52 ~d~vvv~~~~~cp-----~~~~~-~-----~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~- 119 (164)
++.+++|.++.-+ |-.+. | -...-+++.+.||+|+.++... +.+.+|. -.-.+|++|+|+||.
T Consensus 1808 gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eig---k~vs~d~--l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1808 GHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIG---KHVSLDE--LKKENDAIVLATGSTT 1882 (2142)
T ss_pred CcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccc---ccccHHH--HhhccCeEEEEeCCCC
Confidence 7888899887633 22221 1 0112356778899997754221 2233343 345789999999985
Q ss_pred CCCCCCCCc--cceech------------h---hhccCcCCCCcEEEECCcHHHHHh
Q psy7674 120 PTYPDIPGA--HLGITS------------D---DLFSLNKDPGKVLLVGASYIALEC 159 (164)
Q Consensus 120 ~~~p~i~g~--~~v~~~------------~---~~~~~~~~~~~vvViGgG~~g~E~ 159 (164)
|+-+|+||- +.+... + |...+....|+|+|||||..|-.+
T Consensus 1883 prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dc 1939 (2142)
T KOG0399|consen 1883 PRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDC 1939 (2142)
T ss_pred CcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccc
Confidence 666789886 444211 1 112223356899999999988665
No 139
>KOG2755|consensus
Probab=96.70 E-value=0.0025 Score=49.05 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=44.5
Q ss_pred cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-cceechhhhcc------CcCCCCcEEEECCcHHHHHhhccc
Q psy7674 96 HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFS------LNKDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 96 ~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~~~~~~------~~~~~~~vvViGgG~~g~E~A~~l 163 (164)
+.+.. +| ..+.|++|.++||++|.+ ...|. ..+...+|... .-...|.|.|+|-|-+++|++..|
T Consensus 81 hci~t~~g--~~~ky~kKOG~tg~kPkl-q~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yEl 153 (334)
T KOG2755|consen 81 HCIHTQNG--EKLKYFKLCLCTGYKPKL-QVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYEL 153 (334)
T ss_pred ceEEecCC--ceeeEEEEEEecCCCcce-eecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHh
Confidence 33444 55 789999999999999875 33432 44443322221 113468999999999999998765
No 140
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.65 E-value=0.003 Score=37.98 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=36.9
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID 51 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig 51 (164)
+..++++.+++|..++++.. ....+.+.++.+..++|.++++++.++
T Consensus 16 ~~~~l~~~~i~~~~~~i~~~---~~~~~~~~~~~~~~~vP~i~~~~~~i~ 62 (73)
T cd02976 16 TKRFLDERGIPFEEVDVDED---PEALEELKKLNGYRSVPVVVIGDEHLS 62 (73)
T ss_pred HHHHHHHCCCCeEEEeCCCC---HHHHHHHHHHcCCcccCEEEECCEEEe
Confidence 34667888999999998775 455667777778899999999887554
No 141
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.62 E-value=0.0015 Score=39.12 Aligned_cols=27 Identities=52% Similarity=0.993 Sum_probs=24.2
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
.+++|+++|||+|...+ ..|+++++++
T Consensus 1 ~v~ly~~~~Cp~C~~~~-----~~L~~~~i~~ 27 (72)
T cd02066 1 KVVVFSKSTCPYCKRAK-----RLLESLGIEF 27 (72)
T ss_pred CEEEEECCCCHHHHHHH-----HHHHHcCCcE
Confidence 36899999999999999 8899999887
No 142
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.57 E-value=0.0021 Score=54.18 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=17.7
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
..+++|||||+.|+.+|..|
T Consensus 211 ~~dvvIIGgGpaGl~aA~~l 230 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYA 230 (517)
T ss_pred CCCEEEECCCHHHHHHHHHH
Confidence 35899999999999999875
No 143
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.50 E-value=0.0015 Score=54.94 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=18.7
Q ss_pred CCCcEEEECCcHHHHHhhcccC
Q psy7674 143 DPGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l~ 164 (164)
...+|+|||||+.|+++|..|+
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la 232 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAA 232 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHH
Confidence 3478999999999999998763
No 144
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.30 E-value=0.0057 Score=52.08 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=49.4
Q ss_pred HHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC-CCCCCCc--cceechhhhcc------CcCCCCc
Q psy7674 76 KELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT-YPDIPGA--HLGITSDDLFS------LNKDPGK 146 (164)
Q Consensus 76 ~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~-~p~i~g~--~~v~~~~~~~~------~~~~~~~ 146 (164)
+.+++.|+++..+.....+ +..+. ....||++++|||+.+. .+.+++. ..+...-+.+. .....++
T Consensus 195 ~~~~~~Gv~~~~~~~~~~~---~~~~~--~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~ 269 (564)
T PRK12771 195 QRILDLGVEVRLGVRVGED---ITLEQ--LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKR 269 (564)
T ss_pred HHHHHCCCEEEeCCEECCc---CCHHH--HHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCC
Confidence 4567789988765322111 11111 12358999999999754 3457775 33333222211 1223689
Q ss_pred EEEECCcHHHHHhhcc
Q psy7674 147 VLLVGASYIALECAGC 162 (164)
Q Consensus 147 vvViGgG~~g~E~A~~ 162 (164)
++|+|||+.|++.|..
T Consensus 270 v~ViGgg~~a~d~a~~ 285 (564)
T PRK12771 270 VVVIGGGNTAMDAART 285 (564)
T ss_pred EEEECChHHHHHHHHH
Confidence 9999999999998863
No 145
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.29 E-value=0.0026 Score=39.01 Aligned_cols=27 Identities=22% Similarity=0.865 Sum_probs=23.9
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
.+++|..+|||+|+..+ ..|.+.++++
T Consensus 1 ~v~ly~~~~C~~C~~~~-----~~L~~~~~~~ 27 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLM-----RTLDKLGAAY 27 (77)
T ss_pred CEEEEECCCChhHHHHH-----HHHHHcCCce
Confidence 37899999999999988 7888888887
No 146
>PRK09897 hypothetical protein; Provisional
Probab=96.19 E-value=0.042 Score=46.69 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=47.7
Q ss_pred HhhcC--ceEEee-EEEEee--CcEEEe--CCeeEEEEeceEEEecCCCCCCCCCCCc-cceechhh--hccCcCCCCcE
Q psy7674 78 LEKNK--IDYFNA-KAVFVD--KHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDD--LFSLNKDPGKV 147 (164)
Q Consensus 78 l~~~g--v~~~~~-~~~~~~--~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~~~--~~~~~~~~~~v 147 (164)
+.+.| +.++.. +++.++ ...+.+ +..+..+.+|++|+|||..+..+ .++. .++.+.-+ +.... .+.+|
T Consensus 117 a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p~~-~~~~~~yi~~pw~~~~~~~i-~~~~V 194 (534)
T PRK09897 117 ARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDE-EEATRTYFPSPWSGLMEAKV-DACNV 194 (534)
T ss_pred HHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCCCC-ChhhccccCCCCcchhhcCC-CCCeE
Confidence 34455 666655 666663 233333 22225689999999999754221 1121 12221111 11111 25889
Q ss_pred EEECCcHHHHHhhccc
Q psy7674 148 LLVGASYIALECAGCD 163 (164)
Q Consensus 148 vViGgG~~g~E~A~~l 163 (164)
+|+|.|.+++..+..|
T Consensus 195 ~I~GtGLt~iD~v~~L 210 (534)
T PRK09897 195 GIMGTSLSGLDAAMAV 210 (534)
T ss_pred EEECCCHHHHHHHHHH
Confidence 9999999999988655
No 147
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.11 E-value=0.0049 Score=37.10 Aligned_cols=27 Identities=37% Similarity=0.850 Sum_probs=23.1
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+.+|+.+|||+|...+ ..+++.++++.
T Consensus 2 i~lf~~~~C~~C~~~~-----~~l~~~~i~~~ 28 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAK-----EYLTSKGIAFE 28 (74)
T ss_pred EEEEcCCCChhHHHHH-----HHHHHCCCeEE
Confidence 6789999999999987 67788888873
No 148
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.05 E-value=0.0097 Score=35.73 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=31.8
Q ss_pred ccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceE
Q psy7674 3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKH 49 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ 49 (164)
..++++.++.|..++++.. .+..+.+.+..|..++|.++++|+.
T Consensus 17 ~~~l~~~~i~~~~vdi~~~---~~~~~~~~~~~~~~~vP~~~~~~~~ 60 (74)
T TIGR02196 17 KEYLTSKGIAFEEIDVEKD---SAAREEVLKVLGQRGVPVIVIGHKI 60 (74)
T ss_pred HHHHHHCCCeEEEEeccCC---HHHHHHHHHHhCCCcccEEEECCEE
Confidence 4567777888887777765 3444555556799999999999863
No 149
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.94 E-value=0.0041 Score=41.05 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.5
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+.+|+.++||+|+.++ ++|+++|++|.
T Consensus 1 i~iY~~~~C~~c~ka~-----~~L~~~~i~~~ 27 (105)
T cd02977 1 ITIYGNPNCSTSRKAL-----AWLEEHGIEYE 27 (105)
T ss_pred CEEEECCCCHHHHHHH-----HHHHHcCCCcE
Confidence 4789999999999999 89999999984
No 150
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.94 E-value=0.0043 Score=41.56 Aligned_cols=27 Identities=33% Similarity=0.634 Sum_probs=24.5
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+.+|+.++||+|++++ ++|+++|++|.
T Consensus 1 i~iY~~~~C~~c~ka~-----~~L~~~~i~~~ 27 (111)
T cd03036 1 LKFYEYPKCSTCRKAK-----KWLDEHGVDYT 27 (111)
T ss_pred CEEEECCCCHHHHHHH-----HHHHHcCCceE
Confidence 4689999999999999 89999999984
No 151
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.91 E-value=0.0072 Score=36.17 Aligned_cols=17 Identities=29% Similarity=0.886 Sum_probs=14.9
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.+++|+++|||+|...+
T Consensus 2 ~v~~f~~~~C~~C~~~~ 18 (67)
T cd02973 2 NIEVFVSPTCPYCPDAV 18 (67)
T ss_pred EEEEEECCCCCCcHHHH
Confidence 46889999999998877
No 152
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.52 E-value=0.1 Score=43.07 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=53.8
Q ss_pred ceEEeeceEec----------CCceEEEeccCC--cccccccchhhHHHHhhcCceEEee-EEEEeeCcEEEe-CCeeEE
Q psy7674 41 PNIFIHGKHID----------NNSVVIFSKSWC--PFCTKAKENNYEKELEKNKIDYFNA-KAVFVDKHRVKF-AGEERT 106 (164)
Q Consensus 41 p~v~i~~~~ig----------~d~vvv~~~~~c--p~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v-~~~~~~ 106 (164)
..+.|++-.+| +..++++.+... +.........+.+.+++.||+++.+ .+..++...+.+ ++ +.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g--~~ 227 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSG--KV 227 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCC--CE
Confidence 34556665455 457777776542 2222222344567788899999887 556676666666 44 57
Q ss_pred EEeceEEEecCCCCCCC
Q psy7674 107 VSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 107 ~~~d~liiAtGs~~~~p 123 (164)
+.+|.+++|+|.+|+..
T Consensus 228 ~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 228 EHYDMIIEGVGTHPNSK 244 (438)
T ss_pred EEeCEEEECcCCCcChH
Confidence 89999999999998753
No 153
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.51 E-value=0.064 Score=44.66 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=49.8
Q ss_pred CCceEEEeccC--CcccccccchhhHHHHhhcCceEEeeEE-EEee--Cc--EEEe-CCeeEEEEeceEEEecCCCCCCC
Q psy7674 52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNAKA-VFVD--KH--RVKF-AGEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~~~-~~~~--~~--~v~v-~~~~~~~~~d~liiAtGs~~~~p 123 (164)
+.+++++.+.. .|.+.+.-...+.+.|++.+++++.+.. ..+. .. .+.+ ++....+.+|++++|+|-+|+..
T Consensus 196 G~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 196 GSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred CCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence 66777776654 5566666666777888888899998854 3342 22 2333 34222688999999999888776
Q ss_pred C
Q psy7674 124 D 124 (164)
Q Consensus 124 ~ 124 (164)
.
T Consensus 276 ~ 276 (454)
T COG1249 276 G 276 (454)
T ss_pred C
Confidence 4
No 154
>KOG2824|consensus
Probab=95.37 E-value=0.0089 Score=45.92 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=43.4
Q ss_pred CcccccCCCCCccEEEEecCCCChhHHHHHHHhhcCC----CCcceEEeeceEecCCceEE
Q psy7674 1 MVDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQ----KTVPNIFIHGKHIDNNSVVI 57 (164)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~----~~vp~v~i~~~~ig~d~vvv 57 (164)
+|..+|+.+++.|..-+|.-+ +..+++|+++.|. -+.|+|||+|.+||+-..++
T Consensus 152 ~VR~ilesf~V~v~ERDVSMd---~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 152 AVRAILESFRVKVDERDVSMD---SEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred HHHHHHHhCceEEEEeccccc---HHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence 366789999999999988877 6777777776655 56899999999999776554
No 155
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.30 E-value=0.12 Score=43.09 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=45.4
Q ss_pred CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee---CcEEE-e---CCeeEEEEeceEEEecCCCCC
Q psy7674 52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD---KHRVK-F---AGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~---~~~v~-v---~~~~~~~~~d~liiAtGs~~~ 121 (164)
+..++++.+.. .|.........+.+.+++.||+++.+ .+..++ ...+. + +++...+.+|.+++|+|.+|+
T Consensus 203 g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 203 GVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred CCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 45566665433 23322222334556788899999988 455553 22222 1 443347999999999999988
Q ss_pred CCCC
Q psy7674 122 YPDI 125 (164)
Q Consensus 122 ~p~i 125 (164)
.+.+
T Consensus 283 ~~~l 286 (472)
T PRK05976 283 TEGI 286 (472)
T ss_pred CCCC
Confidence 6543
No 156
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.26 E-value=0.014 Score=34.92 Aligned_cols=27 Identities=30% Similarity=0.754 Sum_probs=23.1
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+++|+.+|||+|.+.+ ..+++.++++.
T Consensus 2 v~l~~~~~c~~c~~~~-----~~l~~~~i~~~ 28 (73)
T cd02976 2 VTVYTKPDCPYCKATK-----RFLDERGIPFE 28 (73)
T ss_pred EEEEeCCCChhHHHHH-----HHHHHCCCCeE
Confidence 6889999999999987 77888888773
No 157
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.19 E-value=0.012 Score=40.62 Aligned_cols=27 Identities=37% Similarity=0.652 Sum_probs=24.7
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+.+|+.++||+|++++ .+|+++||+|.
T Consensus 2 i~iY~~~~C~~C~ka~-----~~L~~~gi~~~ 28 (131)
T PRK01655 2 VTLFTSPSCTSCRKAK-----AWLEEHDIPFT 28 (131)
T ss_pred EEEEeCCCChHHHHHH-----HHHHHcCCCcE
Confidence 5789999999999999 89999999983
No 158
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.06 E-value=0.023 Score=34.63 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=32.5
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhc-CCCCcceEEeec
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERT-GQKTVPNIFIHG 47 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-g~~~vp~v~i~~ 47 (164)
+..+|++.++.|..++++.. ....+.+.+++ +..++|.+++++
T Consensus 16 ~~~~L~~~~~~~~~idi~~~---~~~~~~~~~~~~~~~~vP~i~~~~ 59 (77)
T TIGR02200 16 LMRTLDKLGAAYEWVDIEED---EGAADRVVSVNNGNMTVPTVKFAD 59 (77)
T ss_pred HHHHHHHcCCceEEEeCcCC---HhHHHHHHHHhCCCceeCEEEECC
Confidence 45678889999999888776 44456666666 889999997754
No 159
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.00 E-value=0.12 Score=42.60 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=51.4
Q ss_pred ceEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC--cEEEe--CCe
Q psy7674 41 PNIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--HRVKF--AGE 103 (164)
Q Consensus 41 p~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~~v~v--~~~ 103 (164)
..+.|++-.+| +.+++++.+.. .|...........+.+++.||+++.+ .+..++. ..+.+ ++
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g- 237 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTED- 237 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECC-
Confidence 35555665455 45677776643 22222222334456788899999987 4555542 23433 44
Q ss_pred eEEEEeceEEEecCCCCCCCC
Q psy7674 104 ERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 104 ~~~~~~d~liiAtGs~~~~p~ 124 (164)
..+.+|.+++|+|.+|+...
T Consensus 238 -~~i~~D~viva~G~~p~~~~ 257 (438)
T PRK07251 238 -ETYRFDALLYATGRKPNTEP 257 (438)
T ss_pred -eEEEcCEEEEeeCCCCCccc
Confidence 57999999999999988653
No 160
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.93 E-value=0.14 Score=42.57 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=45.1
Q ss_pred CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC--cEEEe--CCeeEEEEeceEEEecCCCCCCCC
Q psy7674 52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--HRVKF--AGEERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~~v~v--~~~~~~~~~d~liiAtGs~~~~p~ 124 (164)
+.+++++.+.. .|.........+.+.|++.||+++.+ .+..++. ..+.+ ++....+.+|.+++|||.+|+...
T Consensus 193 g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 193 GTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred CCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence 34555665433 22222222334567788899999987 4555542 23333 332246899999999999987653
No 161
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.75 E-value=0.22 Score=40.82 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=50.7
Q ss_pred ceEEeeceEec----------CCceEEEeccCCc---ccccccchhhHHHHhhcCceEEee-EEEEeeCcE-E-Ee-CCe
Q psy7674 41 PNIFIHGKHID----------NNSVVIFSKSWCP---FCTKAKENNYEKELEKNKIDYFNA-KAVFVDKHR-V-KF-AGE 103 (164)
Q Consensus 41 p~v~i~~~~ig----------~d~vvv~~~~~cp---~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~-v-~v-~~~ 103 (164)
..+++++-.++ +..++++.+...+ .........+.+.+++.||+++.+ .+..++... + .+ ++
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g- 217 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSG- 217 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCC-
Confidence 45566665455 4467777654322 122222334567788899999877 455565322 2 33 44
Q ss_pred eEEEEeceEEEecCCCCCCC
Q psy7674 104 ERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 104 ~~~~~~d~liiAtGs~~~~p 123 (164)
..+.+|.+++|+|.+|..+
T Consensus 218 -~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 218 -GVYQADMVILATGIKPNSE 236 (427)
T ss_pred -CEEEeCEEEECCCccCCHH
Confidence 5799999999999998753
No 162
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=94.61 E-value=0.031 Score=36.71 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=30.7
Q ss_pred ccccCCCCCccEEEEecCCCChhHHHHHHHhhcC--------CCCc-ceEEeeceEec
Q psy7674 3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTG--------QKTV-PNIFIHGKHID 51 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g--------~~~v-p~v~i~~~~ig 51 (164)
..+|+.++++|+.++|..+ .+.++.+.+..| .... |++|.+++.+|
T Consensus 24 ~~iL~a~kI~fe~vDIa~~---e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 24 LMILEAKKIPFEEVDIAMD---EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp HHHHHHTT--EEEEETTT----HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred HHHHHHcCCCcEEEeCcCC---HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 4578889999999999886 666677766663 3344 79999999777
No 163
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.61 E-value=0.26 Score=40.81 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=44.8
Q ss_pred CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe---CCeeEEEEeceEEEecCCCCCCC
Q psy7674 52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF---AGEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~~~~~~~~~d~liiAtGs~~~~p 123 (164)
..+++++.+.. .|+........+.+.+++.||+++.+ .+..++ ...+.+ ++....+.+|.+++|+|.+|+..
T Consensus 193 g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 193 GSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred CCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 34556665433 22322222334566788899999988 455553 333433 33224699999999999998766
No 164
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.60 E-value=0.17 Score=40.46 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=44.7
Q ss_pred ceEEEeccCCcccc-cccchhhHHHHhhcCceEEee-EEEEeeCcEEEe-CCeeEEEEeceEEEecCCCCC
Q psy7674 54 SVVIFSKSWCPFCT-KAKENNYEKELEKNKIDYFNA-KAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 54 ~vvv~~~~~cp~~~-~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~ 121 (164)
+++++..+...... ......+.+.+++.||+++.+ .+..++...+.+ ++ ..+.+|.+++|+|.+|.
T Consensus 176 ~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g--~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 176 QVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGALILADG--RTLPADAILWATGARAP 244 (364)
T ss_pred eEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCC--CEEecCEEEEccCCChh
Confidence 56666443322221 112334567888999999988 455666666666 45 67999999999999875
No 165
>KOG1336|consensus
Probab=94.59 E-value=0.22 Score=41.38 Aligned_cols=98 Identities=14% Similarity=0.249 Sum_probs=61.8
Q ss_pred hHHHHHHHhhcCCCCcceEEeeceEec----------CCceEEEec-cCCc--ccccccchhhHHHHhhcCceEEeeEEE
Q psy7674 25 AQIQTALFERTGQKTVPNIFIHGKHID----------NNSVVIFSK-SWCP--FCTKAKENNYEKELEKNKIDYFNAKAV 91 (164)
Q Consensus 25 ~~~~~~l~~~~g~~~vp~v~i~~~~ig----------~d~vvv~~~-~~cp--~~~~~~~~~~~~~l~~~gv~~~~~~~~ 91 (164)
++..+.+..+ +. ..-.+.+++.+++ ...++|+.+ .||- .........++..|+++||++++++..
T Consensus 201 eda~~l~~~~-~~-~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~ 278 (478)
T KOG1336|consen 201 EDANRLVAAI-QL-GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVV 278 (478)
T ss_pred HHHHHHHHHh-cc-CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecce
Confidence 4444444433 22 3344555666666 455566554 5544 222233557888999999999999653
Q ss_pred -Eee----CcEEEe---CCeeEEEEeceEEEecCCCCCCCCCC
Q psy7674 92 -FVD----KHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP 126 (164)
Q Consensus 92 -~~~----~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~ 126 (164)
.++ .+...+ ++ ..+.+|.+++.+|++|+.+...
T Consensus 279 s~l~~~~~Gev~~V~l~dg--~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 279 SSLEGNSDGEVSEVKLKDG--KTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred eecccCCCCcEEEEEeccC--CEeccCeEEEeecccccccccc
Confidence 332 233333 55 7899999999999999987655
No 166
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=94.39 E-value=0.02 Score=38.56 Aligned_cols=27 Identities=33% Similarity=0.697 Sum_probs=24.1
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+.+|..++||+|+.++ ++|+++|+++.
T Consensus 1 i~iY~~~~C~~c~ka~-----~~L~~~~i~~~ 27 (117)
T TIGR01617 1 IKVYGSPNCTTCKKAR-----RWLEANGIEYQ 27 (117)
T ss_pred CEEEeCCCCHHHHHHH-----HHHHHcCCceE
Confidence 4689999999999999 89999999873
No 167
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.98 E-value=0.37 Score=39.94 Aligned_cols=73 Identities=27% Similarity=0.271 Sum_probs=45.6
Q ss_pred CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEeeC--cEEEe---C-CeeEEEEeceEEEecCCCCCC
Q psy7674 52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--HRVKF---A-GEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~~v~v---~-~~~~~~~~d~liiAtGs~~~~ 122 (164)
+.+++++.+...+ .........+.+.+++.||+++.+ .+..++. ..+.+ + ++.+.+.+|.+++|+|.+|+.
T Consensus 195 g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 195 GAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred CCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 4456666654332 222222334567788899999988 4555542 23333 2 222568999999999999876
Q ss_pred CC
Q psy7674 123 PD 124 (164)
Q Consensus 123 p~ 124 (164)
..
T Consensus 275 ~~ 276 (462)
T PRK06416 275 EN 276 (462)
T ss_pred CC
Confidence 54
No 168
>PRK06370 mercuric reductase; Validated
Probab=93.80 E-value=0.35 Score=40.12 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=44.5
Q ss_pred CCceEEEeccCCccc--ccccchhhHHHHhhcCceEEee-EEEEeeC--c--EEEe--CCeeEEEEeceEEEecCCCCCC
Q psy7674 52 NNSVVIFSKSWCPFC--TKAKENNYEKELEKNKIDYFNA-KAVFVDK--H--RVKF--AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 52 ~d~vvv~~~~~cp~~--~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~--~v~v--~~~~~~~~~d~liiAtGs~~~~ 122 (164)
+..++++.+...+.. .......+.+.+++.|++++.+ .+..++. . .+.+ +++...+.+|.+++|+|.+|+.
T Consensus 194 G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 194 GSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred CCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 455666665443311 1112334567788899999987 5555542 2 2333 2323579999999999999886
Q ss_pred C
Q psy7674 123 P 123 (164)
Q Consensus 123 p 123 (164)
.
T Consensus 274 ~ 274 (463)
T PRK06370 274 D 274 (463)
T ss_pred C
Confidence 5
No 169
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=93.77 E-value=0.038 Score=37.13 Aligned_cols=27 Identities=30% Similarity=0.623 Sum_probs=24.4
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+.+|..++|++|++++ ++|+++|+++.
T Consensus 2 i~iY~~~~C~~c~ka~-----~~L~~~gi~~~ 28 (115)
T cd03032 2 IKLYTSPSCSSCRKAK-----QWLEEHQIPFE 28 (115)
T ss_pred EEEEeCCCCHHHHHHH-----HHHHHCCCceE
Confidence 5789999999999999 89999999883
No 170
>PRK12559 transcriptional regulator Spx; Provisional
Probab=93.57 E-value=0.042 Score=37.93 Aligned_cols=27 Identities=48% Similarity=0.826 Sum_probs=24.7
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+++|+.++|++|+.++ .+|++.|++|.
T Consensus 2 i~iY~~~~C~~crkA~-----~~L~~~gi~~~ 28 (131)
T PRK12559 2 VVLYTTASCASCRKAK-----AWLEENQIDYT 28 (131)
T ss_pred EEEEeCCCChHHHHHH-----HHHHHcCCCeE
Confidence 6789999999999999 89999999983
No 171
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=93.46 E-value=0.052 Score=33.50 Aligned_cols=17 Identities=35% Similarity=0.991 Sum_probs=14.8
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.+.+|.++|||+|...+
T Consensus 2 ~v~~f~~~~C~~C~~~~ 18 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAK 18 (82)
T ss_pred EEEEEECCCCcchHHHH
Confidence 36789999999999877
No 172
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=93.29 E-value=0.12 Score=30.15 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=35.1
Q ss_pred ccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674 3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID 51 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig 51 (164)
..+++..++.|+.++++..++... .+.+..+.+++|.++.++..+.
T Consensus 16 ~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~ 61 (71)
T cd00570 16 RLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLT 61 (71)
T ss_pred HHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEE
Confidence 457788899999999987654333 4556789999999999876443
No 173
>PRK14694 putative mercuric reductase; Provisional
Probab=93.26 E-value=0.44 Score=39.68 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=45.0
Q ss_pred CCceEEEeccC-CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe--CCeeEEEEeceEEEecCCCCCCCC
Q psy7674 52 NNSVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF--AGEERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 52 ~d~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~ 124 (164)
...++++.+.. .|...+.....+.+.+++.||+++.+ .+..++ ...+.+ ++ ..+.+|.+++|+|.+|+...
T Consensus 201 g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~--~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 201 GSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNA--GTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred CCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECC--CEEEeCEEEEccCCCCCcCC
Confidence 45666666532 12222222345667788899999987 555554 233333 33 46999999999999988653
No 174
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=93.11 E-value=0.072 Score=38.87 Aligned_cols=40 Identities=20% Similarity=0.594 Sum_probs=25.3
Q ss_pred eceEec--CCceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 46 HGKHID--NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 46 ~~~~ig--~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+|+.+. .-.+++|-.+|||||+..-. .+.++.+++++.++
T Consensus 62 dG~~v~lsd~~lV~FwaswCp~C~~e~P-~L~~l~~~~g~~Vi 103 (181)
T PRK13728 62 NGRQVNLADWKVVLFMQGHCPYCHQFDP-VLKQLAQQYGFSVF 103 (181)
T ss_pred CCCEeehhHceEEEEECCCCHhHHHHHH-HHHHHHHHcCCEEE
Confidence 554343 22377799999999998741 22245566677664
No 175
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.02 E-value=0.61 Score=38.67 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=45.0
Q ss_pred CCceEEEeccCC--cccccccchhhHHHHhhcCceEEeeE-EEEee--CcE--EEe--CCeeEEEEeceEEEecCCCCCC
Q psy7674 52 NNSVVIFSKSWC--PFCTKAKENNYEKELEKNKIDYFNAK-AVFVD--KHR--VKF--AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 52 ~d~vvv~~~~~c--p~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~--~~~--v~v--~~~~~~~~~d~liiAtGs~~~~ 122 (164)
..+++++.+... |...+.....+.+.+++.||+++.+. +..++ ... +.+ +++...+.+|.+++|+|.+|+.
T Consensus 189 g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 189 GSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred CCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 456666665432 22222223345677888999999884 55553 222 333 2223579999999999999887
Q ss_pred CC
Q psy7674 123 PD 124 (164)
Q Consensus 123 p~ 124 (164)
.+
T Consensus 269 ~~ 270 (463)
T TIGR02053 269 DG 270 (463)
T ss_pred CC
Confidence 64
No 176
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=92.98 E-value=0.067 Score=36.98 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=24.6
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+.+|+.++|+.|+.++ .+|+++|++|.
T Consensus 2 i~iY~~~~C~~crkA~-----~~L~~~~i~~~ 28 (132)
T PRK13344 2 IKIYTISSCTSCKKAK-----TWLNAHQLSYK 28 (132)
T ss_pred EEEEeCCCCHHHHHHH-----HHHHHcCCCeE
Confidence 5789999999999999 89999999984
No 177
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=92.97 E-value=0.39 Score=39.11 Aligned_cols=47 Identities=17% Similarity=0.344 Sum_probs=32.8
Q ss_pred hHHHHhhcCceEEee-EEEEeeCc--EEEeCCeeEEEEeceEEEecCCCC
Q psy7674 74 YEKELEKNKIDYFNA-KAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRP 120 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~~~~--~v~v~~~~~~~~~d~liiAtGs~~ 120 (164)
+...+++.||+++.+ ++..++.. .+.+......+.+|+||+|||+.+
T Consensus 92 L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 92 WLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 556778899999988 55667443 233322224689999999999864
No 178
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.88 E-value=0.6 Score=38.64 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=44.9
Q ss_pred CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEE--e-CCeeEEEEeceEEEecCCCCCCC
Q psy7674 52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVK--F-AGEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~--v-~~~~~~~~~d~liiAtGs~~~~p 123 (164)
+.+++++.+.. .|+........+.+.+++.|++++.+ .+..++ ...+. + ++ ..+.+|.+++|+|.+|+..
T Consensus 198 g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 198 GVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSG--KKIKADCLLYANGRTGNTD 275 (461)
T ss_pred CCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCC--CEEEeCEEEEeecCCcccc
Confidence 45566665432 33433333445667788899999987 455553 23333 3 34 5799999999999998764
No 179
>PHA02125 thioredoxin-like protein
Probab=92.84 E-value=0.072 Score=32.77 Aligned_cols=16 Identities=31% Similarity=1.007 Sum_probs=14.4
Q ss_pred eEEEeccCCccccccc
Q psy7674 55 VVIFSKSWCPFCTKAK 70 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~ 70 (164)
+++|+.+||+.|+..+
T Consensus 2 iv~f~a~wC~~Ck~~~ 17 (75)
T PHA02125 2 IYLFGAEWCANCKMVK 17 (75)
T ss_pred EEEEECCCCHhHHHHH
Confidence 6789999999999877
No 180
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=92.62 E-value=0.074 Score=36.14 Aligned_cols=17 Identities=24% Similarity=0.772 Sum_probs=14.4
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
-++.|.++|||+|+.-.
T Consensus 26 ~iv~f~~~~Cp~C~~~~ 42 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFS 42 (122)
T ss_pred EEEEEECCCChhHHHHh
Confidence 36779999999999865
No 181
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.53 E-value=0.69 Score=38.37 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=45.5
Q ss_pred CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEeeC---c--EEEeCCeeEEEEeceEEEecCCCCCCC
Q psy7674 52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVDK---H--RVKFAGEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~---~--~v~v~~~~~~~~~d~liiAtGs~~~~p 123 (164)
+.+++++.+...+ .........+.+.|++.||+++.+ .+..++. . .+.+++....+.+|.+++|+|.+|+..
T Consensus 189 g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 189 GSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred CCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 4566666654432 322233344567788899999987 4455532 1 233332224689999999999998865
Q ss_pred C
Q psy7674 124 D 124 (164)
Q Consensus 124 ~ 124 (164)
.
T Consensus 269 ~ 269 (450)
T TIGR01421 269 G 269 (450)
T ss_pred c
Confidence 3
No 182
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=92.53 E-value=0.45 Score=39.12 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=38.4
Q ss_pred chhhHHHHhhcCceEEee-EEEEeeCcEEEe-CCeeEEEEeceEEEecCCCCC
Q psy7674 71 ENNYEKELEKNKIDYFNA-KAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 71 ~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~ 121 (164)
.....+.|++.||+++.+ .+..++...+.+ ++ +.+++|.+++++|.+|+
T Consensus 231 ~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g--~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 231 RKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDG--EVIPTGLVVWSTGVGPG 281 (424)
T ss_pred HHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCC--CEEEccEEEEccCCCCc
Confidence 344567889999999977 566677667766 45 68999999999998875
No 183
>KOG3425|consensus
Probab=92.52 E-value=0.12 Score=35.03 Aligned_cols=40 Identities=28% Similarity=0.547 Sum_probs=28.6
Q ss_pred hHHHHHHHhhcCCCCcceEEeeceEecCCceEEEeccCCccccccc
Q psy7674 25 AQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 25 ~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~ 70 (164)
+++|+.+.....++++=..|.+++. + --..+|||+|+.+.
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd----~--~tGqSWCPdCV~AE 52 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKD----D--TTGQSWCPDCVAAE 52 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccC----C--CCCCcCCchHHHhh
Confidence 7888899888777776666666551 1 12359999999987
No 184
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.49 E-value=0.59 Score=38.51 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=43.8
Q ss_pred CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEeCCeeEEEEeceEEEecCCCCCCC
Q psy7674 52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v~~~~~~~~~d~liiAtGs~~~~p 123 (164)
..+++++.+.. .|...+.....+.+.+++.||+++.+ ++..++ ...+.+..+...+.+|.+++|+|.+|+..
T Consensus 181 g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 181 GSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATA 257 (441)
T ss_pred CCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCC
Confidence 44566665532 23222222334567788899999987 455554 23344411113588999999999998764
No 185
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=92.47 E-value=0.068 Score=35.41 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=24.5
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+.+|+.++|+.|++++ .+|+++|+++.
T Consensus 1 i~iy~~~~C~~crka~-----~~L~~~~i~~~ 27 (105)
T cd03035 1 ITLYGIKNCDTVKKAR-----KWLEARGVAYT 27 (105)
T ss_pred CEEEeCCCCHHHHHHH-----HHHHHcCCCeE
Confidence 4789999999999999 89999999984
No 186
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=92.46 E-value=0.8 Score=38.20 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=43.7
Q ss_pred CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe---C--CeeEEEEeceEEEecCCCCC
Q psy7674 52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF---A--GEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~--~~~~~~~~d~liiAtGs~~~ 121 (164)
..+++++.+...+ .........+.+.|++.||+++.+ .+..++ ...+.+ + ++...+.+|.+++|+|.+|+
T Consensus 206 g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 206 GAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred CCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence 3455666543322 111122234456778889999987 555554 223322 2 32246999999999999988
Q ss_pred CCC
Q psy7674 122 YPD 124 (164)
Q Consensus 122 ~p~ 124 (164)
...
T Consensus 286 ~~~ 288 (475)
T PRK06327 286 TDG 288 (475)
T ss_pred CCC
Confidence 764
No 187
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=92.39 E-value=0.77 Score=37.98 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=43.8
Q ss_pred CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEee--CcE--EEe-CCeeEEEEeceEEEecCCCCCCC
Q psy7674 52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHR--VKF-AGEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~--v~v-~~~~~~~~~d~liiAtGs~~~~p 123 (164)
..+++++.+...+ .........+.+.+++.|++++.+ .+..++ ... +.+ ++ ..+.+|.+++|+|.+|+..
T Consensus 189 G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 189 GVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHG--EEIVADVVLFATGRSPNTK 266 (446)
T ss_pred CCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCC--cEeecCEEEEeeCCCcCCC
Confidence 4556666654432 211222334556788899999987 455553 222 333 34 5799999999999988764
No 188
>PRK06116 glutathione reductase; Validated
Probab=92.26 E-value=0.77 Score=37.95 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=44.0
Q ss_pred CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEeeC---c--EEEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674 52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVDK---H--RVKF-AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~---~--~v~v-~~~~~~~~~d~liiAtGs~~~~ 122 (164)
+..++++.+...+ ...+.....+.+.+++.||+++.+ ++..++. . .+.. ++ ..+.+|.+++|+|.+|+.
T Consensus 190 g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g--~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 190 GSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDG--ETLTVDCLIWAIGREPNT 267 (450)
T ss_pred CCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCC--cEEEeCEEEEeeCCCcCC
Confidence 4455666553322 222222334567788899999987 4555532 2 2333 44 579999999999999886
Q ss_pred CC
Q psy7674 123 PD 124 (164)
Q Consensus 123 p~ 124 (164)
..
T Consensus 268 ~~ 269 (450)
T PRK06116 268 DG 269 (450)
T ss_pred CC
Confidence 54
No 189
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.23 E-value=0.08 Score=43.90 Aligned_cols=22 Identities=32% Similarity=0.244 Sum_probs=19.0
Q ss_pred CCCCcEEEECCcHHHHHhhccc
Q psy7674 142 KDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 142 ~~~~~vvViGgG~~g~E~A~~l 163 (164)
..+++|+|||||+.|+++|..|
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l 159 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRL 159 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHH
Confidence 3458999999999999999765
No 190
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=92.18 E-value=0.41 Score=39.35 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=40.4
Q ss_pred chhhHHHHhhcCceEEeeE-EEEeeCcEEEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674 71 ENNYEKELEKNKIDYFNAK-AVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 71 ~~~~~~~l~~~gv~~~~~~-~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~~ 122 (164)
+...++.|+++||+++.++ ++.++++.+++ +++ +.++++.+|.|+|-+++.
T Consensus 212 ~~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~-~~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 212 SKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGE-EEIPADTVVWAAGVRASP 264 (405)
T ss_pred HHHHHHHHHHCCCEEEcCCceEEECCCcEEEccCC-eeEecCEEEEcCCCcCCh
Confidence 4445678999999999984 56788888888 442 269999999999988753
No 191
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.08 E-value=0.89 Score=37.81 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=43.9
Q ss_pred CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC--cE--EEe---CCeeEEEEeceEEEecCCCCC
Q psy7674 52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--HR--VKF---AGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~~--v~v---~~~~~~~~~d~liiAtGs~~~ 121 (164)
+.+++++.+.. .|.........+.+.|++.||+++.+ .+..++. .. +.+ +++...+.+|.+++|+|.+|+
T Consensus 195 G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 195 GVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred CCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 34555554432 33222223345667788999999987 4555532 22 222 232246999999999999887
Q ss_pred CC
Q psy7674 122 YP 123 (164)
Q Consensus 122 ~p 123 (164)
..
T Consensus 275 ~~ 276 (466)
T PRK07818 275 VE 276 (466)
T ss_pred CC
Confidence 65
No 192
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.07 E-value=0.89 Score=37.87 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=44.1
Q ss_pred CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe---CCeeEEEEeceEEEecCCCCCCC
Q psy7674 52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF---AGEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~~~~~~~~~d~liiAtGs~~~~p 123 (164)
..+++++.+...+ .........+.+.|++.||+++.+ ++..++ ...+.+ ++ +.+.+|.+++|+|.+|+..
T Consensus 200 g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g--~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 200 GVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDG--RTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred CCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCC--cEEEecEEEEeecCCcCCC
Confidence 4455556543322 222222334567788899999987 455553 233333 44 5799999999999998865
Q ss_pred C
Q psy7674 124 D 124 (164)
Q Consensus 124 ~ 124 (164)
.
T Consensus 278 ~ 278 (466)
T PRK07845 278 G 278 (466)
T ss_pred C
Confidence 3
No 193
>PTZ00188 adrenodoxin reductase; Provisional
Probab=92.05 E-value=0.08 Score=44.51 Aligned_cols=21 Identities=38% Similarity=0.395 Sum_probs=18.5
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
.+++|+|||+|+.|+++|..|
T Consensus 38 ~~krVAIVGaGPAGlyaA~~L 58 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHL 58 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHH
Confidence 468999999999999999854
No 194
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=92.01 E-value=0.28 Score=29.04 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674 10 DYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID 51 (164)
Q Consensus 10 ~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig 51 (164)
++.+..++++.. .+ +.+..|..++|++++++++++
T Consensus 30 ~i~~~~id~~~~---~~----l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 30 NISAEMIDAAEF---PD----LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred ceEEEEEEcccC---Hh----HHHHcCCcccCEEEECCEEEE
Confidence 455555555544 22 334558889999999998654
No 195
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=91.91 E-value=1.2 Score=37.13 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=44.7
Q ss_pred cceEEeeceEecCCceEEEeccCCcccccccchhhHHHHhhcCceEEee-EEEEee--Cc---EEEe-CCeeEEEEeceE
Q psy7674 40 VPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KH---RVKF-AGEERTVSAQNF 112 (164)
Q Consensus 40 vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~---~v~v-~~~~~~~~~d~l 112 (164)
.-.+.+..-|+|.|.. +.-..++++.++++|++++.. +++.+. .. .+.+ ++ ..+.+|++
T Consensus 157 ~eil~~~~rHiGTD~l------------~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g--~~i~~~~v 222 (486)
T COG2509 157 EEILPIYQRHIGTDIL------------PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKG--EEIEADYV 222 (486)
T ss_pred ceeeeccccccCccch------------HHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCC--cEEecCEE
Confidence 4445556677777763 233456788899999999887 454443 22 2222 44 68999999
Q ss_pred EEecCCC
Q psy7674 113 IIAVGGR 119 (164)
Q Consensus 113 iiAtGs~ 119 (164)
|+|.|-+
T Consensus 223 vlA~Grs 229 (486)
T COG2509 223 VLAPGRS 229 (486)
T ss_pred EEccCcc
Confidence 9999954
No 196
>PLN02507 glutathione reductase
Probab=91.76 E-value=1 Score=37.95 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=45.1
Q ss_pred CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe-CCeeEEEEeceEEEecCCCCCCCC
Q psy7674 52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v-~~~~~~~~~d~liiAtGs~~~~p~ 124 (164)
..+++++.+...+ .........+.+.|++.||+++.+ .+..++ ...+.+ .+++..+.+|.+++|+|.+|+...
T Consensus 226 G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 226 GATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred CCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 4566776654322 222222334556788899999988 455553 233333 111257999999999999987653
No 197
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=91.50 E-value=0.11 Score=47.05 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=19.5
Q ss_pred CCCcEEEECCcHHHHHhhcccC
Q psy7674 143 DPGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l~ 164 (164)
.+++|+|||||+.|+++|..|+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La 403 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLL 403 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHH
Confidence 4589999999999999998773
No 198
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=91.39 E-value=0.75 Score=37.60 Aligned_cols=53 Identities=28% Similarity=0.419 Sum_probs=34.2
Q ss_pred ccccccchh----hHHHHhhcCceEEeeE-EEEeeCc--EEEe---CCeeEEEEeceEEEecCCC
Q psy7674 65 FCTKAKENN----YEKELEKNKIDYFNAK-AVFVDKH--RVKF---AGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 65 ~~~~~~~~~----~~~~l~~~gv~~~~~~-~~~~~~~--~v~v---~~~~~~~~~d~liiAtGs~ 119 (164)
||...+... +...+++.||+++..+ +..++.. ...+ ++ +.+.+|.+|+|||..
T Consensus 104 Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g--~~i~~d~lilAtGG~ 166 (408)
T COG2081 104 FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSG--ETVKCDSLILATGGK 166 (408)
T ss_pred cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCC--CEEEccEEEEecCCc
Confidence 555444332 3456788899999874 4455422 3333 33 479999999999943
No 199
>KOG1335|consensus
Probab=91.39 E-value=1.6 Score=35.78 Aligned_cols=63 Identities=13% Similarity=0.269 Sum_probs=42.2
Q ss_pred cCCcccccccchhhHHHHhhcCceEEeeE-EEEee---CcE--EEe----CCeeEEEEeceEEEecCCCCCCC
Q psy7674 61 SWCPFCTKAKENNYEKELEKNKIDYFNAK-AVFVD---KHR--VKF----AGEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 61 ~~cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~---~~~--v~v----~~~~~~~~~d~liiAtGs~~~~p 123 (164)
.-||.-..+.+....+.|.+.|++|+.++ +...+ ... +++ ++..+.+..|.|++++|-+|..-
T Consensus 245 ~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 245 QIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred hhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence 33555444455566788889999999985 44432 213 333 34456899999999999877553
No 200
>PTZ00058 glutathione reductase; Provisional
Probab=91.18 E-value=1.2 Score=38.26 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=51.1
Q ss_pred ceEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEeeE-EEEeeCc---EEEe--CC
Q psy7674 41 PNIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVDKH---RVKF--AG 102 (164)
Q Consensus 41 p~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~~~---~v~v--~~ 102 (164)
..++|++..+| +.+++++.+.. .|.........+.+.+++.||+++.+. +..++.. .+.+ .+
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~ 318 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSD 318 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECC
Confidence 45566666566 45666666533 333333333455677888999999874 4445421 2222 22
Q ss_pred eeEEEEeceEEEecCCCCCCC
Q psy7674 103 EERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 103 ~~~~~~~d~liiAtGs~~~~p 123 (164)
+...+.+|.+++|+|.+|+..
T Consensus 319 ~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 319 GRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred CCEEEECCEEEECcCCCCCcc
Confidence 225799999999999887754
No 201
>PRK14727 putative mercuric reductase; Provisional
Probab=91.15 E-value=1 Score=37.72 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=49.4
Q ss_pred ceEEeeceEec----------CCceEEEeccC-CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe--CCee
Q psy7674 41 PNIFIHGKHID----------NNSVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF--AGEE 104 (164)
Q Consensus 41 p~v~i~~~~ig----------~d~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~ 104 (164)
..++|++-.+| +.+++++.++. .+...+.....+.+.+++.||+++.+ .+..++ ...+.+ ++
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~-- 267 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGH-- 267 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcC--
Confidence 34555554444 44566666532 22222222334566788899999987 444443 333333 33
Q ss_pred EEEEeceEEEecCCCCCCCC
Q psy7674 105 RTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 105 ~~~~~d~liiAtGs~~~~p~ 124 (164)
..+.+|.+++|+|.+|+...
T Consensus 268 g~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 268 GELRAEKLLISTGRHANTHD 287 (479)
T ss_pred CeEEeCEEEEccCCCCCccC
Confidence 35889999999999987653
No 202
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=91.07 E-value=0.14 Score=31.26 Aligned_cols=27 Identities=30% Similarity=0.696 Sum_probs=24.0
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+.+|..+.||||++.+ ..|...|+++.
T Consensus 2 i~Ly~~~~~p~c~kv~-----~~L~~~gi~y~ 28 (77)
T cd03040 2 ITLYQYKTCPFCCKVR-----AFLDYHGIPYE 28 (77)
T ss_pred EEEEEcCCCHHHHHHH-----HHHHHCCCceE
Confidence 6789999999999999 88899999873
No 203
>PRK13748 putative mercuric reductase; Provisional
Probab=90.89 E-value=1 Score=38.30 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=43.8
Q ss_pred CCceEEEeccCC-cccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe--CCeeEEEEeceEEEecCCCCCCCC
Q psy7674 52 NNSVVIFSKSWC-PFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF--AGEERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 52 ~d~vvv~~~~~c-p~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~ 124 (164)
...++++.+... +.........+.+.+++.||+++.+ .+..+. ...+.+ ++ ..+.+|.+++|+|.+|+...
T Consensus 293 g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~--~~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 293 GSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGH--GELRADKLLVATGRAPNTRS 369 (561)
T ss_pred CCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecC--CeEEeCEEEEccCCCcCCCC
Confidence 445666665431 1222222344567788899999987 444453 223333 33 36899999999999988643
No 204
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.88 E-value=1.3 Score=36.81 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=43.5
Q ss_pred CCceEEEeccCC--cccccccchhhHHHHhhcCceEEee-EEEEeeC--cEE--Ee----CCeeEEEEeceEEEecCCCC
Q psy7674 52 NNSVVIFSKSWC--PFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--HRV--KF----AGEERTVSAQNFIIAVGGRP 120 (164)
Q Consensus 52 ~d~vvv~~~~~c--p~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~~v--~v----~~~~~~~~~d~liiAtGs~~ 120 (164)
+.+++++.+... |.........+.+.|++.||+++.+ .+..+.. ..+ .+ +++...+.+|.+++|+|.+|
T Consensus 197 G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 197 GAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred CCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence 445556554332 2222222344567788899999988 4555532 222 22 13335799999999999998
Q ss_pred CCC
Q psy7674 121 TYP 123 (164)
Q Consensus 121 ~~p 123 (164)
+..
T Consensus 277 n~~ 279 (466)
T PRK06115 277 YTQ 279 (466)
T ss_pred ccc
Confidence 754
No 205
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=90.70 E-value=1.2 Score=36.10 Aligned_cols=79 Identities=10% Similarity=0.110 Sum_probs=48.8
Q ss_pred eEEeeceEec----------CCceEEEeccCCc--ccccc-cchhhHHHHhhcCceEEee-EEEEeeC-cE--EEe-CCe
Q psy7674 42 NIFIHGKHID----------NNSVVIFSKSWCP--FCTKA-KENNYEKELEKNKIDYFNA-KAVFVDK-HR--VKF-AGE 103 (164)
Q Consensus 42 ~v~i~~~~ig----------~d~vvv~~~~~cp--~~~~~-~~~~~~~~l~~~gv~~~~~-~~~~~~~-~~--v~v-~~~ 103 (164)
.+.|++-.+| ...++++.+...+ ..... ....+.+.+++.||+++.+ .+..++. .. +.+ ++
T Consensus 147 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g- 225 (396)
T PRK09754 147 VVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSG- 225 (396)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCC-
Confidence 4556665555 4566776654432 11111 2234556778899999987 4455542 22 333 44
Q ss_pred eEEEEeceEEEecCCCCCC
Q psy7674 104 ERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 104 ~~~~~~d~liiAtGs~~~~ 122 (164)
+.+.+|.+++|+|.+|+.
T Consensus 226 -~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 226 -ETLQADVVIYGIGISAND 243 (396)
T ss_pred -CEEECCEEEECCCCChhh
Confidence 579999999999999874
No 206
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.70 E-value=1.6 Score=36.49 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=45.3
Q ss_pred ceEEeeEEEEeeCc-----EEEeCCeeEEEEeceEEEecCCCCCCCCC-----CCc-cceechhhh--ccCcCCCCcEEE
Q psy7674 83 IDYFNAKAVFVDKH-----RVKFAGEERTVSAQNFIIAVGGRPTYPDI-----PGA-HLGITSDDL--FSLNKDPGKVLL 149 (164)
Q Consensus 83 v~~~~~~~~~~~~~-----~v~v~~~~~~~~~d~liiAtGs~~~~p~i-----~g~-~~v~~~~~~--~~~~~~~~~vvV 149 (164)
+.+++.+++.+... ......++....+|-+|+|||-.+..++. +|. .++-+.-.. ++-.+...+|+|
T Consensus 122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli 201 (474)
T COG4529 122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLI 201 (474)
T ss_pred eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEE
Confidence 66666666554211 12222222678899999999977655443 333 233332222 222233456999
Q ss_pred ECCcHHHHHhhcc
Q psy7674 150 VGASYIALECAGC 162 (164)
Q Consensus 150 iGgG~~g~E~A~~ 162 (164)
+|.|..-++.-..
T Consensus 202 ~GsgLt~~D~v~~ 214 (474)
T COG4529 202 VGSGLTSIDQVLV 214 (474)
T ss_pred ecCCchhHHHHHH
Confidence 9999988776443
No 207
>PRK12831 putative oxidoreductase; Provisional
Probab=90.66 E-value=0.15 Score=42.54 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.6
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
..++|+|||||+.|+.+|..|
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l 159 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDL 159 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHH
Confidence 457899999999999999776
No 208
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=90.64 E-value=0.15 Score=42.31 Aligned_cols=20 Identities=35% Similarity=0.424 Sum_probs=18.1
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
+++|+|||||+.|+++|..|
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l 152 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASEL 152 (449)
T ss_pred CCEEEEECcCHHHHHHHHHH
Confidence 47899999999999999876
No 209
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=90.38 E-value=0.17 Score=33.81 Aligned_cols=16 Identities=44% Similarity=0.760 Sum_probs=12.8
Q ss_pred eEEEeccCCccccccc
Q psy7674 55 VVIFSKSWCPFCTKAK 70 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~ 70 (164)
++.|+++|||+|...+
T Consensus 26 vv~f~a~wC~~C~~~~ 41 (113)
T cd02975 26 VVFSSKEGCQYCEVTK 41 (113)
T ss_pred EEEeCCCCCCChHHHH
Confidence 4556899999999766
No 210
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=90.38 E-value=0.17 Score=34.01 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=25.2
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
++++|+.+.|+.|+.++ .+|+++|++|.
T Consensus 1 ~i~iy~~p~C~~crkA~-----~~L~~~gi~~~ 28 (113)
T cd03033 1 DIIFYEKPGCANNARQK-----ALLEAAGHEVE 28 (113)
T ss_pred CEEEEECCCCHHHHHHH-----HHHHHcCCCcE
Confidence 47899999999999999 89999999983
No 211
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=90.21 E-value=1.9 Score=36.24 Aligned_cols=83 Identities=11% Similarity=0.189 Sum_probs=49.8
Q ss_pred eEEeeceEec----------CCceEEEeccC-CcccccccchhhHHHHhhcCceEEeeE-EEEee--Cc--EEEe-CCe-
Q psy7674 42 NIFIHGKHID----------NNSVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVD--KH--RVKF-AGE- 103 (164)
Q Consensus 42 ~v~i~~~~ig----------~d~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~--~~--~v~v-~~~- 103 (164)
.+.|++-.+| +.+++++.++. .|.....-...+.+.|++.||+++.+. ...+. .. .+.+ +++
T Consensus 183 vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~ 262 (484)
T TIGR01438 183 TLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTN 262 (484)
T ss_pred EEEECCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCc
Confidence 4555665555 45667766542 222222223345677889999999874 33442 22 2333 331
Q ss_pred eEEEEeceEEEecCCCCCCCC
Q psy7674 104 ERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 104 ~~~~~~d~liiAtGs~~~~p~ 124 (164)
...+.+|.+++|+|.+|+...
T Consensus 263 ~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 263 GIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred ceEEEeCEEEEEecCCcCCCc
Confidence 246999999999999887643
No 212
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=90.21 E-value=0.18 Score=30.98 Aligned_cols=26 Identities=19% Similarity=0.470 Sum_probs=23.1
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
+.+|+.++||+|.+.+ ..|..+|+++
T Consensus 2 ~~Ly~~~~sp~~~kv~-----~~L~~~gi~y 27 (77)
T cd03041 2 LELYEFEGSPFCRLVR-----EVLTELELDV 27 (77)
T ss_pred ceEecCCCCchHHHHH-----HHHHHcCCcE
Confidence 5689999999999988 7788999988
No 213
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=89.99 E-value=0.18 Score=42.03 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.4
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
.+++|+|||||++|+++|..|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l 160 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADIL 160 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHH
Confidence 357899999999999999765
No 214
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=89.81 E-value=0.31 Score=34.51 Aligned_cols=33 Identities=18% Similarity=0.433 Sum_probs=21.6
Q ss_pred CCceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 52 ~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
...++.|-++|||+|+.... .+.++.+++++.+
T Consensus 51 ~~~lvnFWAsWCppCr~e~P-~L~~l~~~~~~~V 83 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAP-VLKRFSQQFGLPV 83 (153)
T ss_pred CCEEEEEECCCChhHHHHHH-HHHHHHHHcCCcE
Confidence 34577799999999998752 2223445556655
No 215
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=89.45 E-value=0.21 Score=41.64 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=18.1
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
+++|+|||||+.|+.+|..|
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l 162 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQL 162 (471)
T ss_pred CCEEEEECcCHHHHHHHHHH
Confidence 47899999999999999876
No 216
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=89.37 E-value=0.22 Score=30.00 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=22.0
Q ss_pred EEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 56 VIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 56 vv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
++|+..+||+|.+.+ -.++.+|+++
T Consensus 2 ~ly~~~~~p~~~rv~-----~~L~~~gl~~ 26 (71)
T cd03060 2 ILYSFRRCPYAMRAR-----MALLLAGITV 26 (71)
T ss_pred EEEecCCCcHHHHHH-----HHHHHcCCCc
Confidence 578999999999988 7788889987
No 217
>PRK10262 thioredoxin reductase; Provisional
Probab=89.30 E-value=2.2 Score=33.49 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=34.4
Q ss_pred hhHHHHhhcCceEEee-EEEEeeCc-----EEEe-C----CeeEEEEeceEEEecCCCCCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVDKH-----RVKF-A----GEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~~~-----~v~v-~----~~~~~~~~d~liiAtGs~~~~p 123 (164)
.+.+.+++.+|+++.+ .+..+... .+++ + ++.+.+.+|.+++++|.+|+..
T Consensus 190 ~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 190 RLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred HHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence 3455677889999886 45555432 2333 2 2234799999999999998754
No 218
>PTZ00052 thioredoxin reductase; Provisional
Probab=89.03 E-value=2.7 Score=35.43 Aligned_cols=81 Identities=12% Similarity=0.205 Sum_probs=49.0
Q ss_pred eEEeeceEec----------CCceEEEeccC-CcccccccchhhHHHHhhcCceEEeeE-EEEee--Cc--EEEe-CCee
Q psy7674 42 NIFIHGKHID----------NNSVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVD--KH--RVKF-AGEE 104 (164)
Q Consensus 42 ~v~i~~~~ig----------~d~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~--~~--~v~v-~~~~ 104 (164)
.+.|++-.+| ...++++..+. .+.........+.+.|++.||+++.+. +..+. .. .+.+ ++
T Consensus 185 vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g-- 262 (499)
T PTZ00052 185 TLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDG-- 262 (499)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCC--
Confidence 4555555455 55666665432 112222223455677889999999884 33342 12 2333 44
Q ss_pred EEEEeceEEEecCCCCCCCC
Q psy7674 105 RTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 105 ~~~~~d~liiAtGs~~~~p~ 124 (164)
+.+.+|.+++|+|-+|+...
T Consensus 263 ~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 263 TTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred CEEEcCEEEEeeCCCCCccc
Confidence 56899999999999987653
No 219
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=88.95 E-value=0.22 Score=45.46 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.5
Q ss_pred CCcEEEECCcHHHHHhhcccC
Q psy7674 144 PGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l~ 164 (164)
.++|+|||||+.|+.+|..|+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LA 557 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLA 557 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHH
Confidence 368999999999999998763
No 220
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=88.93 E-value=0.14 Score=33.52 Aligned_cols=18 Identities=44% Similarity=1.291 Sum_probs=13.0
Q ss_pred CceEEEeccCCccccccc
Q psy7674 53 NSVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 53 d~vvv~~~~~cp~~~~~~ 70 (164)
..+++|..+|||||....
T Consensus 7 ~~v~~F~~~~C~~C~~~~ 24 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLE 24 (112)
T ss_dssp EEEEEEE-TT-HHHHHHH
T ss_pred EEEEEEECCCCHHHHHHH
Confidence 357789999999999765
No 221
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=88.92 E-value=0.24 Score=41.52 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=18.1
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.++++|||+|++|+++|..|
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L 162 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQL 162 (485)
T ss_pred CCEEEEECCcHHHHHHHHHH
Confidence 47999999999999999876
No 222
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=88.74 E-value=0.23 Score=45.26 Aligned_cols=21 Identities=29% Similarity=0.192 Sum_probs=18.6
Q ss_pred CCcEEEECCcHHHHHhhcccC
Q psy7674 144 PGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l~ 164 (164)
+++|+|||||+.|+.+|..|+
T Consensus 539 gKkVaIIGgGPAGLsAA~~La 559 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLA 559 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHH
Confidence 478999999999999998763
No 223
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=88.73 E-value=2.4 Score=35.73 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=43.8
Q ss_pred ceEEEeccC--CcccccccchhhHHHHhhcCceEEeeE-EEEeeC-----cEEEe-CCeeEEEEeceEEEecCCCCCCC
Q psy7674 54 SVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVDK-----HRVKF-AGEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 54 ~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~~-----~~v~v-~~~~~~~~~d~liiAtGs~~~~p 123 (164)
.++++.+.. .|.........+.+.|++.||+++.+. +..+.. ..+.+ ++ ..+.+|.+++|+|.+|+..
T Consensus 215 ~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g--~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 215 KVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESG--KTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred eEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCC--CEEEcCEEEEeeCCCcCcc
Confidence 566665433 333333334456678889999999874 444531 12333 34 5799999999999888764
No 224
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.45 E-value=0.27 Score=42.81 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.6
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
.+++|+|||||+.|+.+|..|
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L 346 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVL 346 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHH
Confidence 357999999999999999876
No 225
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=88.39 E-value=1.6 Score=35.95 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=27.0
Q ss_pred hhHHHHhhcCceEEee-EEEEe--eCcE---EEe-CCeeEEEEeceEEEecCCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFV--DKHR---VKF-AGEERTVSAQNFIIAVGGRP 120 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~--~~~~---v~v-~~~~~~~~~d~liiAtGs~~ 120 (164)
.++..+++.|++++.+ ++..+ +... +.. ++ ..+.+|++|+|||+..
T Consensus 114 ~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~--~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 114 ALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG--GEYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT--EEEEESEEEE----SS
T ss_pred HHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc--ccccCCEEEEecCCCC
Confidence 3566678889999987 45555 2333 333 34 7899999999999765
No 226
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=88.20 E-value=0.73 Score=27.64 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=32.8
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEee-ce
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIH-GK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~-~~ 48 (164)
+..+|+++|+.|+.++++..... +.+.++...+++|.+..+ |.
T Consensus 15 v~~~L~~~gl~~e~~~v~~~~~~----~~~~~~np~~~vP~L~~~~g~ 58 (71)
T cd03060 15 ARMALLLAGITVELREVELKNKP----AEMLAASPKGTVPVLVLGNGT 58 (71)
T ss_pred HHHHHHHcCCCcEEEEeCCCCCC----HHHHHHCCCCCCCEEEECCCc
Confidence 45678899999999999876322 344567889999999885 55
No 227
>PRK07846 mycothione reductase; Reviewed
Probab=88.07 E-value=2.8 Score=34.82 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=47.0
Q ss_pred ceEEeeceEec----------CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEeeC--cEEEe---CC
Q psy7674 41 PNIFIHGKHID----------NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--HRVKF---AG 102 (164)
Q Consensus 41 p~v~i~~~~ig----------~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~~v~v---~~ 102 (164)
..+.|++-.++ +.+++++.+...+ .........+.++ .+.+++++.+ ++..++. ..+.+ ++
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g 246 (451)
T PRK07846 168 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTEL-ASKRWDVRLGRNVVGVSQDGSGVTLRLDDG 246 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHH-HhcCeEEEeCCEEEEEEEcCCEEEEEECCC
Confidence 45556665455 5567777764422 2111111223333 3467999877 4555542 23333 34
Q ss_pred eeEEEEeceEEEecCCCCCCCC
Q psy7674 103 EERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 103 ~~~~~~~d~liiAtGs~~~~p~ 124 (164)
..+.+|.+++|+|.+|+...
T Consensus 247 --~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 247 --STVEADVLLVATGRVPNGDL 266 (451)
T ss_pred --cEeecCEEEEEECCccCccc
Confidence 57999999999999988654
No 228
>KOG3851|consensus
Probab=87.87 E-value=0.13 Score=41.05 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=29.6
Q ss_pred CceEEeeEEEEee--CcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc
Q psy7674 82 KIDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 128 (164)
Q Consensus 82 gv~~~~~~~~~~~--~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~ 128 (164)
+..++...+...+ .+++.+.+ ++++.||+||||+|-.-+.--|+|.
T Consensus 106 ~a~wi~ekv~~f~P~~N~v~t~g-g~eIsYdylviA~Giql~y~~IkGl 153 (446)
T KOG3851|consen 106 GATWIKEKVKEFNPDKNTVVTRG-GEEISYDYLVIAMGIQLDYGKIKGL 153 (446)
T ss_pred CcHHHHHHHHhcCCCcCeEEccC-CcEEeeeeEeeeeeceeccchhcCh
Confidence 4444444443333 45566533 2789999999999987666556665
No 229
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=87.85 E-value=0.3 Score=44.39 Aligned_cols=22 Identities=18% Similarity=-0.041 Sum_probs=19.3
Q ss_pred CCCcEEEECCcHHHHHhhcccC
Q psy7674 143 DPGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l~ 164 (164)
.+++|+|||||+.|+.+|..|+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~La 326 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLA 326 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHH
Confidence 3589999999999999998763
No 230
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.71 E-value=0.32 Score=42.37 Aligned_cols=20 Identities=30% Similarity=0.217 Sum_probs=18.1
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.++|+|||||+.|+.+|..|
T Consensus 193 ~k~VaIIGaGpAGl~aA~~L 212 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYL 212 (652)
T ss_pred CCEEEEECCCHHHHHHHHHH
Confidence 47899999999999999876
No 231
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=87.65 E-value=3.3 Score=34.26 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=43.3
Q ss_pred CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--Cc-EEEe---CCeeEEEEeceEEEecCCCCCC
Q psy7674 52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KH-RVKF---AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~-~v~v---~~~~~~~~~d~liiAtGs~~~~ 122 (164)
+..+.++.+.. .|.........+.+.+++. |+++.+ .+..++ .. .+.+ +++...+.+|.+++|+|.+|+.
T Consensus 192 g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 192 GVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred CCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 34556655432 2222222233455667778 999877 445553 21 3443 3433579999999999999887
Q ss_pred CC
Q psy7674 123 PD 124 (164)
Q Consensus 123 p~ 124 (164)
..
T Consensus 271 ~~ 272 (460)
T PRK06292 271 DG 272 (460)
T ss_pred CC
Confidence 63
No 232
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=87.57 E-value=2.2 Score=34.38 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=34.2
Q ss_pred hhHHHHhhcCceEEee-EEEEeeC--cE--EEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVDK--HR--VKF-AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~~--~~--v~v-~~~~~~~~~d~liiAtGs~~~~ 122 (164)
.+.+.+++.|++++.+ .+..++. .. +.+ ++ ..+.+|.+++|+|.+|+.
T Consensus 188 ~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 188 RLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSG--RSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred HHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCC--cEEECCEEEECcCCCcch
Confidence 3456788899999876 4555542 22 333 44 679999999999998864
No 233
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=87.13 E-value=0.33 Score=42.15 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=18.3
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.++|+|||||++|+.+|..|
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L 329 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADIL 329 (639)
T ss_pred CCEEEEECcCHHHHHHHHHH
Confidence 58999999999999999876
No 234
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=87.12 E-value=0.71 Score=27.63 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=30.7
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEee-ceEe
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIH-GKHI 50 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~-~~~i 50 (164)
+..+|..+|+.|+.+.++..+.. ..+ +..+.+.+|.++.+ +..+
T Consensus 15 vr~~L~~~gl~~~~~~~~~~~~~----~~~-~~~~~~~vP~L~~~~~~~l 59 (71)
T cd03037 15 ARMIAGLKNIPVEQIILQNDDEA----TPI-RMIGAKQVPILEKDDGSFM 59 (71)
T ss_pred HHHHHHHcCCCeEEEECCCCchH----HHH-HhcCCCccCEEEeCCCeEe
Confidence 45678899999999988754321 122 35688899999886 5533
No 235
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=86.95 E-value=0.38 Score=42.55 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=18.5
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
.+++|+|||||+.|+.+|..|
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l 450 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDL 450 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHH
Confidence 357899999999999999876
No 236
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=86.80 E-value=0.52 Score=39.21 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=18.1
Q ss_pred CCCCcEEEECCcHHHHHhhccc
Q psy7674 142 KDPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 142 ~~~~~vvViGgG~~g~E~A~~l 163 (164)
...-+|+|||||+.|.-+|..|
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~L 58 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETL 58 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHH
Confidence 3335799999999999999765
No 237
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=86.79 E-value=1.1 Score=27.47 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=30.2
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEe
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFI 45 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i 45 (164)
|..+|++.++.|+.++++.. ......+.++.+.+.+|.+..
T Consensus 16 v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 16 VREVLTELELDVILYPCPKG---SPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred HHHHHHHcCCcEEEEECCCC---hHHHHHHHHhCCCCcccEEEe
Confidence 45678899999999988643 333345666789999998755
No 238
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=86.68 E-value=0.37 Score=28.89 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=22.1
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
+.+|+..+||||.+.+ -.|..+|+++
T Consensus 1 ~~Ly~~~~~p~~~rvr-----~~L~~~gl~~ 26 (71)
T cd03037 1 MKLYIYEHCPFCVKAR-----MIAGLKNIPV 26 (71)
T ss_pred CceEecCCCcHhHHHH-----HHHHHcCCCe
Confidence 3578889999999888 7788889987
No 239
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=86.43 E-value=0.3 Score=32.81 Aligned_cols=17 Identities=41% Similarity=1.024 Sum_probs=14.2
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+|||+|....
T Consensus 17 vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 17 LLLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEEeCCCCHHHHHHH
Confidence 46679999999999865
No 240
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=86.33 E-value=0.44 Score=28.55 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=23.1
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+++|+.++||+|.+.+ -.++..|+++.
T Consensus 1 ~~ly~~~~~~~~~~v~-----~~l~~~gi~~~ 27 (73)
T cd03059 1 MTLYSGPDDVYSHRVR-----IVLAEKGVSVE 27 (73)
T ss_pred CEEEECCCChhHHHHH-----HHHHHcCCccE
Confidence 4689999999999988 77888999873
No 241
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=86.29 E-value=0.43 Score=40.75 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=18.4
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
..++|+|||+|++|+.+|..|
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l 156 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHL 156 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHH
Confidence 458999999999999999765
No 242
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=86.20 E-value=0.83 Score=31.90 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=20.7
Q ss_pred eEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~ 86 (164)
++.+..+|||+|...-. ..+.+.++..|+.++
T Consensus 26 vv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~ 59 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRALQELHRELGPSHFNVL 59 (153)
T ss_pred EEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEE
Confidence 45588999999988642 233344455577764
No 243
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=86.13 E-value=0.74 Score=27.64 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=33.8
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
+..+|+++|+.|+.+.++.... ...++.+.++...+.+|.+..++.
T Consensus 15 v~~~l~~~gi~~e~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~ 60 (74)
T cd03045 15 VLLTAKALGLELNLKEVNLMKG-EHLKPEFLKLNPQHTVPTLVDNGF 60 (74)
T ss_pred HHHHHHHcCCCCEEEEecCccC-CcCCHHHHhhCcCCCCCEEEECCE
Confidence 4568899999999999986543 333455556778889999976654
No 244
>KOG2495|consensus
Probab=86.02 E-value=2.2 Score=35.41 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=38.9
Q ss_pred hHHHHhhcCceEEeeEE-EEeeCcEEEe---CCeeEEEEeceEEEecCCCCCC
Q psy7674 74 YEKELEKNKIDYFNAKA-VFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~-~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~ 122 (164)
-++++.+.+|++..++. ..++++++.+ +|+.+.++|--|+.|||..|+.
T Consensus 279 ae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 279 AENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred HHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch
Confidence 35678889999999955 4577777766 5666789999999999988763
No 245
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=85.98 E-value=2.6 Score=34.61 Aligned_cols=48 Identities=21% Similarity=0.164 Sum_probs=33.7
Q ss_pred hhHHHHhhcCceEEee-EEEEeeCc--E--EEeCCeeEEEEeceEEEecCCCCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVDKH--R--VKFAGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~~~--~--v~v~~~~~~~~~d~liiAtGs~~~~ 122 (164)
.+.+.+++.||+++.+ ++..++.. . +..++ ..+.+|.+++|+|.+|+.
T Consensus 196 ~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~--~~i~~d~vi~a~G~~p~~ 248 (444)
T PRK09564 196 VMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDK--GEYEADVVIVATGVKPNT 248 (444)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCC--CEEEcCEEEECcCCCcCH
Confidence 4556788899999877 45555422 1 22244 469999999999988864
No 246
>PLN02546 glutathione reductase
Probab=85.52 E-value=4.8 Score=34.60 Aligned_cols=83 Identities=10% Similarity=0.157 Sum_probs=48.3
Q ss_pred ceEEeeceEec----------CCceEEEeccCC--cccccccchhhHHHHhhcCceEEeeE-EEEee---CcEEEe-CCe
Q psy7674 41 PNIFIHGKHID----------NNSVVIFSKSWC--PFCTKAKENNYEKELEKNKIDYFNAK-AVFVD---KHRVKF-AGE 103 (164)
Q Consensus 41 p~v~i~~~~ig----------~d~vvv~~~~~c--p~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~---~~~v~v-~~~ 103 (164)
..+.|++-.++ ...++++.+... +.........+.+.|++.||+++.+. +..+. ...+.+ .++
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~ 333 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNK 333 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECC
Confidence 44555555455 456677765432 22222223345577888999999873 44442 233333 121
Q ss_pred eEEEEeceEEEecCCCCCCC
Q psy7674 104 ERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 104 ~~~~~~d~liiAtGs~~~~p 123 (164)
.....+|.+++|+|.+|+..
T Consensus 334 g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 334 GTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred eEEEecCEEEEeeccccCCC
Confidence 23445899999999998764
No 247
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=85.41 E-value=0.45 Score=43.55 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=18.0
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.++|+|||||+.|+.+|..|
T Consensus 430 ~~kVaIIG~GPAGLsaA~~L 449 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADL 449 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHH
Confidence 36899999999999999876
No 248
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=84.80 E-value=0.61 Score=26.90 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.0
Q ss_pred EEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 56 VIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 56 vv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
.+|..++||+|.+.. ..++.+++++.
T Consensus 2 ~ly~~~~~~~~~~~~-----~~l~~~~i~~~ 27 (71)
T cd00570 2 KLYYFPGSPRSLRVR-----LALEEKGLPYE 27 (71)
T ss_pred EEEeCCCCccHHHHH-----HHHHHcCCCcE
Confidence 578889999999888 77888899873
No 249
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=84.78 E-value=0.75 Score=27.39 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=32.1
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeec
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHG 47 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~ 47 (164)
+..+|+++++.|+.++++...+ ....+.+.++...+.+|.+.+++
T Consensus 15 ~~~~L~~~~l~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~l~~~~ 59 (74)
T cd03051 15 VRIFLAEKGIDVPLVTVDLAAG-EQRSPEFLAKNPAGTVPVLELDD 59 (74)
T ss_pred HHHHHHHcCCCceEEEeecccC-ccCCHHHHhhCCCCCCCEEEeCC
Confidence 3467888999999999876432 22233466678899999998743
No 250
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=84.68 E-value=0.94 Score=28.65 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=32.4
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEee-ce
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIH-GK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~-~~ 48 (164)
+..+|++.++.|+.++++.... ++.+.+....+.+|.+.++ |.
T Consensus 33 v~~~L~~~gl~~~~~~v~~~~~----~~~~~~~np~~~vPvL~~~~g~ 76 (89)
T cd03055 33 ARLVLAAKNIPHEVININLKDK----PDWFLEKNPQGKVPALEIDEGK 76 (89)
T ss_pred HHHHHHHcCCCCeEEEeCCCCC----cHHHHhhCCCCCcCEEEECCCC
Confidence 4567889999999999876532 2445567788999999987 54
No 251
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.64 E-value=5.9 Score=33.07 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=41.4
Q ss_pred CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe---CC--eeEEEEeceEEEecCCCCC
Q psy7674 52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF---AG--EERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~~--~~~~~~~d~liiAtGs~~~ 121 (164)
+.+++++.... .|.........+.+.+++. ++++.+ .+..+. ...+.+ ++ +...+.+|.+++|+|.+|+
T Consensus 197 G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 197 GSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred CCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 44555655433 3332222233455667677 998887 444443 223322 22 1246999999999999987
Q ss_pred CCC
Q psy7674 122 YPD 124 (164)
Q Consensus 122 ~p~ 124 (164)
...
T Consensus 276 ~~~ 278 (471)
T PRK06467 276 GKL 278 (471)
T ss_pred CCc
Confidence 653
No 252
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=84.63 E-value=0.73 Score=31.66 Aligned_cols=32 Identities=34% Similarity=0.707 Sum_probs=20.9
Q ss_pred eEEEecc-CCcccccccc--hhhHHHHhhcCceEE
Q psy7674 55 VVIFSKS-WCPFCTKAKE--NNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~-~cp~~~~~~~--~~~~~~l~~~gv~~~ 86 (164)
++.|-.+ |||+|..... ..+.+.++..+++++
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v 66 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVV 66 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEE
Confidence 4446667 9999998763 223344566778774
No 253
>PTZ00256 glutathione peroxidase; Provisional
Probab=84.55 E-value=1 Score=32.67 Aligned_cols=30 Identities=7% Similarity=0.160 Sum_probs=19.4
Q ss_pred EEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674 57 IFSKSWCPFCTKAKE--NNYEKELEKNKIDYF 86 (164)
Q Consensus 57 v~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~ 86 (164)
++-.+|||+|..... ..+.+.+++.|+.++
T Consensus 47 ~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv 78 (183)
T PTZ00256 47 VNVACKCGLTSDHYTQLVELYKQYKSQGLEIL 78 (183)
T ss_pred EEECCCCCchHHHHHHHHHHHHHHhhCCcEEE
Confidence 457899999997642 223344556677764
No 254
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=84.50 E-value=7.6 Score=32.24 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=46.5
Q ss_pred ceEEeeceEec----------CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe---CC
Q psy7674 41 PNIFIHGKHID----------NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF---AG 102 (164)
Q Consensus 41 p~v~i~~~~ig----------~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~~ 102 (164)
..+.|++-.++ +.+++++.+...+ .........+.+.+ +.+++++.+ ++..++ ...+.+ ++
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g 249 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDG 249 (452)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCC
Confidence 34555554455 4567777754432 21222222233333 458999876 455553 223333 34
Q ss_pred eeEEEEeceEEEecCCCCCCCC
Q psy7674 103 EERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 103 ~~~~~~~d~liiAtGs~~~~p~ 124 (164)
+.+.+|.+++|+|.+|+...
T Consensus 250 --~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 250 --STVTADVLLVATGRVPNGDL 269 (452)
T ss_pred --CEEEcCEEEEeeccCcCCCC
Confidence 57999999999999987643
No 255
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=84.45 E-value=3.8 Score=31.90 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=30.1
Q ss_pred hhHHHHhhcCceEEee-EEEEee--CcEEE-e--CCeeEEEEeceEEEecCCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVD--KHRVK-F--AGEERTVSAQNFIIAVGGRP 120 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~v~-v--~~~~~~~~~d~liiAtGs~~ 120 (164)
.+.+.+++.|++++.+ ++..++ ...+. + ++ ..+.+|.+|+|+|...
T Consensus 152 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~--g~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 152 ALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSD--GEIRADRVVLAAGAWS 203 (358)
T ss_dssp HHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETT--EEEEECEEEE--GGGH
T ss_pred hhHHHHHHhhhhccccccccchhhcccccccccccc--cccccceeEecccccc
Confidence 4556677889999999 676664 44443 3 33 3499999999999753
No 256
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=84.44 E-value=5.4 Score=33.06 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=33.0
Q ss_pred hhhHHHHhhcCceEEee-EEEEee--CcEEE---eCC-eeEEEEeceEEEecCCC
Q psy7674 72 NNYEKELEKNKIDYFNA-KAVFVD--KHRVK---FAG-EERTVSAQNFIIAVGGR 119 (164)
Q Consensus 72 ~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~---v~~-~~~~~~~d~liiAtGs~ 119 (164)
..+.+.++++|++++.+ ++..+. ...++ .++ ....+.+|.+|+|||+-
T Consensus 267 ~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 267 EALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 34677888999999988 555543 33222 222 12479999999999987
No 257
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=84.42 E-value=0.51 Score=39.69 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.4
Q ss_pred CCcEEEECCcHHHHHhhcccC
Q psy7674 144 PGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l~ 164 (164)
.++++|||||..|+++|..|+
T Consensus 124 ~~svLVIGGGvAGitAAl~La 144 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELA 144 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHH
Confidence 479999999999999997763
No 258
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=84.35 E-value=1.1 Score=26.55 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=32.8
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
+..++.+.++.|+.++++..+. ....+.+.++...+.+|.+..+|.
T Consensus 15 v~~~l~~~~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~ 60 (73)
T cd03056 15 VRLLLALLGIPYEWVEVDILKG-ETRTPEFLALNPNGEVPVLELDGR 60 (73)
T ss_pred HHHHHHHcCCCcEEEEecCCCc-ccCCHHHHHhCCCCCCCEEEECCE
Confidence 4567888999999999986432 223344555777889999988765
No 259
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=84.12 E-value=0.75 Score=29.35 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=14.4
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.+.+|..+|||||....
T Consensus 15 ~i~~F~~~~C~~C~~~~ 31 (89)
T cd03026 15 NFETYVSLSCHNCPDVV 31 (89)
T ss_pred EEEEEECCCCCCcHHHH
Confidence 46778999999999876
No 260
>PTZ00056 glutathione peroxidase; Provisional
Probab=83.73 E-value=1.1 Score=33.14 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=19.8
Q ss_pred eEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~ 86 (164)
++.|-.+|||+|..... ..+.+.+++.|+.++
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vv 76 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEIL 76 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEE
Confidence 44477899999986531 223344455677664
No 261
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=83.38 E-value=0.96 Score=30.40 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=19.3
Q ss_pred ceEEEeccCCcccccccch--hhHHHHhhcCceEE
Q psy7674 54 SVVIFSKSWCPFCTKAKEN--NYEKELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~--~~~~~l~~~gv~~~ 86 (164)
.++.|-.+|||+|...... .+.+.+++.++.++
T Consensus 26 vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi 60 (126)
T cd03012 26 VLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVI 60 (126)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEE
Confidence 3455778999999976421 22333344456554
No 262
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=83.34 E-value=0.76 Score=40.23 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=19.6
Q ss_pred CCCCcEEEECCcHHHHHhhcccC
Q psy7674 142 KDPGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 142 ~~~~~vvViGgG~~g~E~A~~l~ 164 (164)
+.+.+|+|||||..|+-+|..|+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~ 101 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAK 101 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHH
Confidence 44578999999999999998773
No 263
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=83.09 E-value=4.5 Score=28.37 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=22.3
Q ss_pred ceEEeeEEEEeeC----cEEEe-CCeeEEEEeceEEEecCC
Q psy7674 83 IDYFNAKAVFVDK----HRVKF-AGEERTVSAQNFIIAVGG 118 (164)
Q Consensus 83 v~~~~~~~~~~~~----~~v~v-~~~~~~~~~d~liiAtGs 118 (164)
|.++..+++.++. ..+.+ ++ ..+.+|++++|||-
T Consensus 117 v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 117 VRHVRAEVVDIRRDDDGYRVVTADG--QSIRADAVVLATGH 155 (156)
T ss_pred EEEEeeEEEEEEEcCCcEEEEECCC--CEEEeCEEEECCCC
Confidence 4445566666642 22333 55 67899999999994
No 264
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=83.09 E-value=3.5 Score=37.22 Aligned_cols=48 Identities=15% Similarity=0.340 Sum_probs=34.9
Q ss_pred hhHHHHhhcCceEEeeE-EEEeeC----c--EEEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674 73 NYEKELEKNKIDYFNAK-AVFVDK----H--RVKF-AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~-~~~~~~----~--~v~v-~~~~~~~~~d~liiAtGs~~~~ 122 (164)
.+.+.+++.||+++.+. +..+.. . .+.+ ++ +.+.+|.+++|+|.+|+.
T Consensus 192 ~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG--~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 192 QLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG--SELEVDFIVFSTGIRPQD 247 (847)
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCC--CEEEcCEEEECCCcccCc
Confidence 45677889999999884 444531 1 2333 45 679999999999999875
No 265
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=83.08 E-value=1.2 Score=24.47 Aligned_cols=16 Identities=44% Similarity=1.373 Sum_probs=13.6
Q ss_pred eEEEeccCCccccccc
Q psy7674 55 VVIFSKSWCPFCTKAK 70 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~ 70 (164)
+++|..+||++|....
T Consensus 1 l~~~~~~~c~~c~~~~ 16 (69)
T cd01659 1 LVLFYAPWCPFCQALR 16 (69)
T ss_pred CEEEECCCChhHHhhh
Confidence 3678889999999987
No 266
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=82.70 E-value=0.65 Score=39.23 Aligned_cols=19 Identities=16% Similarity=0.013 Sum_probs=17.1
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
-.|+|||||.+|+-+|..|
T Consensus 46 ~DVvIIGGGI~G~a~A~~L 64 (497)
T PTZ00383 46 YDVVIVGGGVTGTALFYTL 64 (497)
T ss_pred ccEEEECccHHHHHHHHHH
Confidence 5799999999999999776
No 267
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=82.62 E-value=5.7 Score=30.30 Aligned_cols=48 Identities=27% Similarity=0.427 Sum_probs=32.1
Q ss_pred HHHHhhc-CceEEee-EEEEeeCc----EEEe----CCeeEEEEeceEEEecCCCCCC
Q psy7674 75 EKELEKN-KIDYFNA-KAVFVDKH----RVKF----AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 75 ~~~l~~~-gv~~~~~-~~~~~~~~----~v~v----~~~~~~~~~d~liiAtGs~~~~ 122 (164)
.+.+++. |++++.+ ....++.. .+.+ +++...+.+|.+++|||.+|..
T Consensus 183 ~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 240 (300)
T TIGR01292 183 LDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNT 240 (300)
T ss_pred HHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCCh
Confidence 4556666 9999877 44555422 1333 2334679999999999988765
No 268
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=82.61 E-value=0.85 Score=27.14 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.1
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
+.+|..++||+|.+.. -.++.+|+++
T Consensus 1 ~~Ly~~~~s~~~~~~~-----~~L~~~~l~~ 26 (74)
T cd03051 1 MKLYDSPTAPNPRRVR-----IFLAEKGIDV 26 (74)
T ss_pred CEEEeCCCCcchHHHH-----HHHHHcCCCc
Confidence 3678999999999988 6788889887
No 269
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=82.61 E-value=1.4 Score=26.84 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=34.0
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
|.++|.++|+.|+.++++.... ......+.++...+.+|....+|.
T Consensus 15 v~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~inP~g~vP~L~~~g~ 60 (73)
T cd03052 15 VRLVIAEKGLRCEEYDVSLPLS-EHNEPWFMRLNPTGEVPVLIHGDN 60 (73)
T ss_pred HHHHHHHcCCCCEEEEecCCcC-ccCCHHHHHhCcCCCCCEEEECCE
Confidence 4567899999999999876532 223445777889999998876554
No 270
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=82.45 E-value=1.2 Score=27.11 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=24.8
Q ss_pred cCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 6 TAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 6 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
.++.+.++.+..+|...+.... +..|-+++|+++++|+
T Consensus 25 ~~~~~~~~~~~~vd~~~~~~~~-----~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 25 AKEMGDAVEVEYINVMENPQKA-----MEYGIMAVPAIVINGD 62 (82)
T ss_pred HHHhcCceEEEEEeCccCHHHH-----HHcCCccCCEEEECCE
Confidence 3444555777777766443322 2358889999999875
No 271
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=82.43 E-value=1.3 Score=32.31 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=19.0
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
.++.|..+|||+|+.... .+.+..++.++++
T Consensus 77 vvl~F~atwCp~C~~~lp-~l~~~~~~~~~~v 107 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFP-IIKSIARAEETDV 107 (189)
T ss_pred EEEEEECCCChhHHHHHH-HHHHHHHhcCCcE
Confidence 455588999999997642 2223334445554
No 272
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=82.36 E-value=0.51 Score=30.55 Aligned_cols=17 Identities=29% Similarity=0.780 Sum_probs=14.2
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||++|....
T Consensus 14 vlv~f~a~wC~~C~~~~ 30 (104)
T cd02953 14 VFVDFTADWCVTCKVNE 30 (104)
T ss_pred EEEEEEcchhHHHHHHH
Confidence 45679999999999865
No 273
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=82.35 E-value=1.5 Score=34.08 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=21.6
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
.++.|.++|||+|..... .+..+.+++++.++
T Consensus 169 ~Lv~F~AswCp~C~~~~P-~L~~la~~yg~~Vi 200 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAP-ILQAFEDRYGIEVL 200 (271)
T ss_pred EEEEEECCCCccHHHHhH-HHHHHHHHcCcEEE
Confidence 466788999999987642 23345556677663
No 274
>KOG3855|consensus
Probab=81.23 E-value=0.97 Score=37.26 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=16.5
Q ss_pred cEEEECCcHHHHHhhccc
Q psy7674 146 KVLLVGASYIALECAGCD 163 (164)
Q Consensus 146 ~vvViGgG~~g~E~A~~l 163 (164)
.|+|+|||++|.-+|+.|
T Consensus 38 dVvIvGgGpvg~aLAa~l 55 (481)
T KOG3855|consen 38 DVVIVGGGPVGLALAAAL 55 (481)
T ss_pred CEEEECCchHHHHHHHHh
Confidence 599999999999999876
No 275
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=81.05 E-value=1.2 Score=32.34 Aligned_cols=31 Identities=19% Similarity=0.530 Sum_probs=19.7
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
.++.|-.+|||+|+..... + ..+.+.+++++
T Consensus 71 vvv~FwatwC~~C~~e~p~-l-~~l~~~~~~vi 101 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQY-L-NQLSAQGIRVV 101 (185)
T ss_pred EEEEEECCCCHHHHHHHHH-H-HHHHHcCCEEE
Confidence 4555889999999876522 2 22344577664
No 276
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=80.86 E-value=1 Score=29.15 Aligned_cols=16 Identities=38% Similarity=0.943 Sum_probs=13.4
Q ss_pred eEEEeccCCccccccc
Q psy7674 55 VVIFSKSWCPFCTKAK 70 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~ 70 (164)
++.|..+|||+|+...
T Consensus 19 lv~f~a~wC~~C~~~~ 34 (104)
T cd03000 19 LVDFYAPWCGHCKKLE 34 (104)
T ss_pred EEEEECCCCHHHHhhC
Confidence 4568899999999876
No 277
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=80.64 E-value=0.9 Score=39.60 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=17.6
Q ss_pred CcEEEECCcHHHHHhhcccC
Q psy7674 145 GKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l~ 164 (164)
.+|+|||||.+|+-+|..|+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La 280 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALA 280 (662)
T ss_pred CCEEEECccHHHHHHHHHHH
Confidence 47999999999999998763
No 278
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=80.60 E-value=1.7 Score=25.84 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=32.2
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
+..++.+.++.|+.++++..+. ....+.+.++...+.+|.+..++.
T Consensus 15 ~~~~l~~~gi~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~ 60 (73)
T cd03042 15 VRIALNLKGLDYEYVPVNLLKG-EQLSPAYRALNPQGLVPTLVIDGL 60 (73)
T ss_pred HHHHHHHcCCCCeEEEecCccC-CcCChHHHHhCCCCCCCEEEECCE
Confidence 3467888999999999886532 222244555778899998876655
No 279
>PLN02463 lycopene beta cyclase
Probab=80.59 E-value=7.6 Score=32.40 Aligned_cols=48 Identities=19% Similarity=0.100 Sum_probs=33.1
Q ss_pred hHHHHhhcCceEEeeEEEEee--Cc--EEEe-CCeeEEEEeceEEEecCCCCCCC
Q psy7674 74 YEKELEKNKIDYFNAKAVFVD--KH--RVKF-AGEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~--~~--~v~v-~~~~~~~~~d~liiAtGs~~~~p 123 (164)
+.+.+.+.|++++.+++..++ .. .+.+ ++ ..+.+|.+|.|+|.++...
T Consensus 120 Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG--~~i~A~lVI~AdG~~s~l~ 172 (447)
T PLN02463 120 MLERCIANGVQFHQAKVKKVVHEESKSLVVCDDG--VKIQASLVLDATGFSRCLV 172 (447)
T ss_pred HHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECcCCCcCcc
Confidence 444556679999877776664 22 2333 44 5799999999999887643
No 280
>PLN02412 probable glutathione peroxidase
Probab=80.49 E-value=1.9 Score=30.70 Aligned_cols=33 Identities=9% Similarity=0.151 Sum_probs=21.9
Q ss_pred ceEEEeccCCccccccc--chhhHHHHhhcCceEE
Q psy7674 54 SVVIFSKSWCPFCTKAK--ENNYEKELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~--~~~~~~~l~~~gv~~~ 86 (164)
.++.|-.+|||+|+... -..+.+.+++.|+.++
T Consensus 32 vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vv 66 (167)
T PLN02412 32 LLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEIL 66 (167)
T ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEE
Confidence 34447789999999753 2234455666777764
No 281
>PLN02697 lycopene epsilon cyclase
Probab=80.04 E-value=0.98 Score=38.48 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=16.9
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
-.|+|||||+.|+.+|..|
T Consensus 109 ~DVvIVGaGPAGLalA~~L 127 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAES 127 (529)
T ss_pred ccEEEECcCHHHHHHHHHH
Confidence 4799999999999999765
No 282
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=80.00 E-value=1.7 Score=30.35 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=18.9
Q ss_pred ceEEEeccCCcccccccchhhHH---HHhhcCceEE
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEK---ELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~---~l~~~gv~~~ 86 (164)
.++.|-.+||| |..+.. .+.+ .+++.|+.++
T Consensus 25 vvl~fwatwC~-C~~e~p-~l~~l~~~~~~~~~~vv 58 (152)
T cd00340 25 LLIVNVASKCG-FTPQYE-GLEALYEKYKDRGLVVL 58 (152)
T ss_pred EEEEEEcCCCC-chHHHH-HHHHHHHHhcCCCEEEE
Confidence 45558899999 987652 3333 3444566654
No 283
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=79.89 E-value=5.9 Score=31.50 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=29.6
Q ss_pred hHHHHhh-cCceEEee-EEEEeeCcEEEeCCeeEEEEeceEEEecCCC
Q psy7674 74 YEKELEK-NKIDYFNA-KAVFVDKHRVKFAGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 74 ~~~~l~~-~gv~~~~~-~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~ 119 (164)
+.+.+.+ .|++++.+ .+..++...+.++. ..+.+|++|+|||+.
T Consensus 151 l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~--g~i~a~~VV~A~G~~ 196 (365)
T TIGR03364 151 LAAYLAEQHGVEFHWNTAVTSVETGTVRTSR--GDVHADQVFVCPGAD 196 (365)
T ss_pred HHHHHHhcCCCEEEeCCeEEEEecCeEEeCC--CcEEeCEEEECCCCC
Confidence 3344555 49999876 45566554555543 246899999999975
No 284
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=79.81 E-value=1.1 Score=28.99 Aligned_cols=17 Identities=41% Similarity=1.101 Sum_probs=14.1
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|+...
T Consensus 21 vlV~F~a~WC~~C~~~~ 37 (100)
T cd02999 21 TAVLFYASWCPFSASFR 37 (100)
T ss_pred EEEEEECCCCHHHHhHh
Confidence 45669999999999765
No 285
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=79.75 E-value=0.75 Score=28.54 Aligned_cols=17 Identities=41% Similarity=1.023 Sum_probs=14.2
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|+++||++|..-+
T Consensus 20 vlv~f~a~wC~~C~~l~ 36 (82)
T PF13899_consen 20 VLVDFGADWCPPCKKLE 36 (82)
T ss_dssp EEEEEETTTTHHHHHHH
T ss_pred EEEEEECCCCHhHHHHH
Confidence 46778999999999865
No 286
>PRK00536 speE spermidine synthase; Provisional
Probab=79.75 E-value=1.3 Score=34.26 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=14.4
Q ss_pred CcCCCCcEEEECCcHHHH
Q psy7674 140 LNKDPGKVLLVGASYIAL 157 (164)
Q Consensus 140 ~~~~~~~vvViGgG~~g~ 157 (164)
....|++|+|||||..|.
T Consensus 69 ~h~~pk~VLIiGGGDGg~ 86 (262)
T PRK00536 69 TKKELKEVLIVDGFDLEL 86 (262)
T ss_pred hCCCCCeEEEEcCCchHH
Confidence 345689999999998764
No 287
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=79.48 E-value=0.91 Score=31.30 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.1
Q ss_pred eEEEeccCCccccccc
Q psy7674 55 VVIFSKSWCPFCTKAK 70 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~ 70 (164)
++.|..+|||+|..-+
T Consensus 27 mv~f~sdwC~~Ck~l~ 42 (130)
T cd02960 27 MVIHHLEDCPHSQALK 42 (130)
T ss_pred EEEEeCCcCHhHHHHH
Confidence 4558889999999865
No 288
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=79.25 E-value=5.5 Score=35.66 Aligned_cols=48 Identities=27% Similarity=0.519 Sum_probs=34.6
Q ss_pred hHHHHhhcCceEEeeE-EEEeeC----cEEEe-CCeeEEEEeceEEEecCCCCCCC
Q psy7674 74 YEKELEKNKIDYFNAK-AVFVDK----HRVKF-AGEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~-~~~~~~----~~v~v-~~~~~~~~~d~liiAtGs~~~~p 123 (164)
+.+.+++.||+++.+. +..+.. ..+.+ ++ +.+.+|.+++|+|.+|+..
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG--~~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDG--SSLEADLIVMAAGIRPNDE 241 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCC--CEEEcCEEEECCCCCcCcH
Confidence 4567888999999884 444432 12444 45 6799999999999998753
No 289
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=78.94 E-value=1.4 Score=32.79 Aligned_cols=17 Identities=29% Similarity=0.813 Sum_probs=13.7
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.+++|..+|||+|...+
T Consensus 136 ~I~~F~a~~C~~C~~~~ 152 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAV 152 (215)
T ss_pred EEEEEECCCCCCcHHHH
Confidence 44558999999999766
No 290
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=78.73 E-value=1.9 Score=28.83 Aligned_cols=33 Identities=12% Similarity=0.347 Sum_probs=20.4
Q ss_pred CceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 53 NSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 53 d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
..++.|-.+|||+|.... ..+.++.++.++.++
T Consensus 27 ~vvv~F~a~~C~~C~~~~-~~l~~l~~~~~~~vv 59 (127)
T cd03010 27 PYLLNVWASWCAPCREEH-PVLMALARQGRVPIY 59 (127)
T ss_pred EEEEEEEcCcCHHHHHHH-HHHHHHHHhcCcEEE
Confidence 356668899999999764 223333334455553
No 291
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=78.64 E-value=1.5 Score=27.66 Aligned_cols=28 Identities=21% Similarity=0.555 Sum_probs=24.1
Q ss_pred CceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 53 NSVVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 53 d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
+.+.+|+...||+|.+.+ -.+...|++|
T Consensus 17 ~~~~Ly~~~~sp~~~kv~-----~~L~~~gl~~ 44 (89)
T cd03055 17 GIIRLYSMRFCPYAQRAR-----LVLAAKNIPH 44 (89)
T ss_pred CcEEEEeCCCCchHHHHH-----HHHHHcCCCC
Confidence 348899999999999888 7788889987
No 292
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=78.62 E-value=3.3 Score=24.52 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=29.9
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
+..+++++|+.|+.++++...... .+.++...+.+|.+..++.
T Consensus 15 v~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~vP~l~~~~~ 57 (73)
T cd03059 15 VRIVLAEKGVSVEIIDVDPDNPPE----DLAELNPYGTVPTLVDRDL 57 (73)
T ss_pred HHHHHHHcCCccEEEEcCCCCCCH----HHHhhCCCCCCCEEEECCE
Confidence 356788999999999988654333 3334567789997765543
No 293
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=78.48 E-value=2.5 Score=25.60 Aligned_cols=17 Identities=35% Similarity=0.706 Sum_probs=14.1
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.+++|..+||++|....
T Consensus 13 ~ll~~~~~~C~~C~~~~ 29 (93)
T cd02947 13 VVVDFWAPWCGPCKAIA 29 (93)
T ss_pred EEEEEECCCChhHHHhh
Confidence 46778899999998766
No 294
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=78.28 E-value=8.7 Score=29.12 Aligned_cols=49 Identities=24% Similarity=0.236 Sum_probs=31.8
Q ss_pred hhHHHHhhcCceEEee-EEEEe--eCcEEE--eCCeeEEEEeceEEEecCCCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFV--DKHRVK--FAGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~--~~~~v~--v~~~~~~~~~d~liiAtGs~~~ 121 (164)
.+.+.+.+.|++++.+ ++..+ +...+. +..+...+.+|++|.|+|....
T Consensus 96 ~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 96 QLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred HHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchH
Confidence 4556667789999777 44443 333333 3322357999999999998654
No 295
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=78.19 E-value=1.4 Score=28.10 Aligned_cols=17 Identities=24% Similarity=0.575 Sum_probs=14.1
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|....
T Consensus 16 vlv~f~a~~C~~C~~~~ 32 (97)
T cd02949 16 ILVLYTSPTCGPCRTLK 32 (97)
T ss_pred EEEEEECCCChhHHHHH
Confidence 35668999999999876
No 296
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=78.09 E-value=2.3 Score=26.01 Aligned_cols=39 Identities=10% Similarity=0.290 Sum_probs=28.5
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
++.+.++.+.++.++.+|.. .+ + . .-|-.++|+++++|+
T Consensus 20 ~~~~~~e~~~~~~~~~v~~~---~~---a-~-~~~v~~vPti~i~G~ 58 (76)
T TIGR00412 20 VKKAVEELGIDAEFEKVTDM---NE---I-L-EAGVTATPGVAVDGE 58 (76)
T ss_pred HHHHHHHcCCCeEEEEeCCH---HH---H-H-HcCCCcCCEEEECCE
Confidence 35577788888999999832 22 2 2 248899999999986
No 297
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=78.00 E-value=2.2 Score=32.52 Aligned_cols=33 Identities=6% Similarity=0.190 Sum_probs=21.5
Q ss_pred ceEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674 54 SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~ 86 (164)
.++.|-.+|||+|..... ..+.+.+++.|+.++
T Consensus 102 vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VI 136 (236)
T PLN02399 102 LLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEIL 136 (236)
T ss_pred EEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEE
Confidence 455588999999987642 233444566677764
No 298
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=77.97 E-value=9.6 Score=31.33 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=29.7
Q ss_pred hhHHHHhh-cCceEEeeEEEEee--CcEEE---e-CCeeEEEEeceEEEecCC
Q psy7674 73 NYEKELEK-NKIDYFNAKAVFVD--KHRVK---F-AGEERTVSAQNFIIAVGG 118 (164)
Q Consensus 73 ~~~~~l~~-~gv~~~~~~~~~~~--~~~v~---v-~~~~~~~~~d~liiAtGs 118 (164)
.+++.+++ .+++++.++++.+. ..++. + ++ ..+.+|.+|+|||.
T Consensus 100 ~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g--~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 100 AMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDG--EEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS--EEEEECEEEE-TTT
T ss_pred HHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCC--CEEecCEEEEeccc
Confidence 45556665 58999988887653 33322 2 55 78999999999997
No 299
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=77.90 E-value=7.1 Score=32.36 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=32.6
Q ss_pred hhhHHHHhhcCceEEee-EEEEee--CcEEEe----CCeeEEEEeceEEEecCCCC
Q psy7674 72 NNYEKELEKNKIDYFNA-KAVFVD--KHRVKF----AGEERTVSAQNFIIAVGGRP 120 (164)
Q Consensus 72 ~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v----~~~~~~~~~d~liiAtGs~~ 120 (164)
..+.+.+++.|++++.+ .+..++ ...+.. ++....+.+|.+|+|||+..
T Consensus 263 ~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 263 NALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 34567788889999887 455543 222322 34335689999999999753
No 300
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=77.70 E-value=1.4 Score=30.94 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.4
Q ss_pred eEEEeccCCccccccc
Q psy7674 55 VVIFSKSWCPFCTKAK 70 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~ 70 (164)
++-|.++|||.|+...
T Consensus 29 lL~FwAsWCppCr~e~ 44 (146)
T cd03008 29 LLFFGAVVSPQCQLFA 44 (146)
T ss_pred EEEEECCCChhHHHHH
Confidence 4448999999999876
No 301
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=77.37 E-value=1.1 Score=30.15 Aligned_cols=17 Identities=29% Similarity=0.874 Sum_probs=14.0
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|.++||+.|+.-.
T Consensus 22 VlV~F~a~WC~~C~~~~ 38 (117)
T cd02959 22 LMLLIHKTWCGACKALK 38 (117)
T ss_pred EEEEEeCCcCHHHHHHH
Confidence 35668999999999875
No 302
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=77.35 E-value=1.8 Score=32.81 Aligned_cols=20 Identities=20% Similarity=0.707 Sum_probs=16.9
Q ss_pred cCCceEEEeccCCccccccc
Q psy7674 51 DNNSVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 51 g~d~vvv~~~~~cp~~~~~~ 70 (164)
+...+++|+-..||||++..
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~ 126 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLH 126 (232)
T ss_pred CCEEEEEEECCCChHHHHHH
Confidence 55678899999999999875
No 303
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=77.13 E-value=1.6 Score=27.84 Aligned_cols=17 Identities=41% Similarity=1.040 Sum_probs=14.2
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+|||+|+...
T Consensus 20 ~~v~f~a~wC~~C~~~~ 36 (104)
T cd02997 20 VLVMFYAPWCGHCKKMK 36 (104)
T ss_pred EEEEEECCCCHHHHHhC
Confidence 35778899999999876
No 304
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=76.97 E-value=2.1 Score=29.00 Aligned_cols=40 Identities=25% Similarity=0.508 Sum_probs=20.0
Q ss_pred hHHHHHHHhhcCC-CCcceEEeeceEecCCceEEEeccCCcccccccc
Q psy7674 25 AQIQTALFERTGQ-KTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKE 71 (164)
Q Consensus 25 ~~~~~~l~~~~g~-~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~~ 71 (164)
.+..+.+...... .++=..|+++.. . -.++|||+|+.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d-~------~g~sWCPDC~~aep 46 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKD-E------TGQSWCPDCVAAEP 46 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B--T------TS-BSSHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCC-C------CCCcccHHHHHHHH
Confidence 4556666553322 334344444442 1 23599999999873
No 305
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=76.66 E-value=8.6 Score=30.85 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=31.6
Q ss_pred hhHHHHhhcCceEEeeEEEEeeC---cE--EEeCCeeEEEEeceEEEecCCCC
Q psy7674 73 NYEKELEKNKIDYFNAKAVFVDK---HR--VKFAGEERTVSAQNFIIAVGGRP 120 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~~~~~~~---~~--v~v~~~~~~~~~d~liiAtGs~~ 120 (164)
.+.+.+.+.|++++.+++..+.. .. +.+++ +..+.++.+|.|+|..+
T Consensus 90 ~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~-g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 90 ELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAG-GQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCC-CCEEEeCEEEECCCCch
Confidence 34455566789998777766532 22 33322 15799999999999877
No 306
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=76.42 E-value=1.6 Score=26.48 Aligned_cols=43 Identities=14% Similarity=0.287 Sum_probs=33.3
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
+.+.++.+++.+++++++.... .+.+.++...+++|.+..+|.
T Consensus 13 v~~~l~~~~i~~~~~~v~~~~~----~~~~~~~~p~~~vPvL~~~g~ 55 (75)
T PF13417_consen 13 VRLALEEKGIPYELVPVDPEEK----RPEFLKLNPKGKVPVLVDDGE 55 (75)
T ss_dssp HHHHHHHHTEEEEEEEEBTTST----SHHHHHHSTTSBSSEEEETTE
T ss_pred HHHHHHHcCCeEEEeccCcccc----hhHHHhhcccccceEEEECCE
Confidence 3466788899999999986632 556667789999999987766
No 307
>PLN02985 squalene monooxygenase
Probab=76.29 E-value=1.4 Score=37.38 Aligned_cols=20 Identities=25% Similarity=0.130 Sum_probs=17.5
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.-+|+|||||..|+-+|..|
T Consensus 43 ~~DViIVGAG~aGlalA~aL 62 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYAL 62 (514)
T ss_pred CceEEEECCCHHHHHHHHHH
Confidence 35799999999999999776
No 308
>PRK06847 hypothetical protein; Provisional
Probab=76.22 E-value=10 Score=30.18 Aligned_cols=48 Identities=13% Similarity=-0.010 Sum_probs=32.4
Q ss_pred hhHHHHhhcCceEEee-EEEEee--CcEEEe---CCeeEEEEeceEEEecCCCCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVD--KHRVKF---AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~~~~~~~~~d~liiAtGs~~~~ 122 (164)
.+.+.+++.|++++.+ ++..++ ...+.+ ++ +.+.+|.+|.|+|..+..
T Consensus 112 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g--~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 112 ILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDG--TTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCC--CEEEcCEEEECcCCCcch
Confidence 3445566679999887 455553 333333 44 578999999999987654
No 309
>PRK13984 putative oxidoreductase; Provisional
Probab=76.20 E-value=1.6 Score=37.57 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=18.4
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
..++++|||+|+.|+.+|..|
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L 302 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFL 302 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHH
Confidence 357899999999999999866
No 310
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=76.19 E-value=1.8 Score=29.30 Aligned_cols=18 Identities=44% Similarity=1.054 Sum_probs=14.0
Q ss_pred ceEEEec-------cCCcccccccc
Q psy7674 54 SVVIFSK-------SWCPFCTKAKE 71 (164)
Q Consensus 54 ~vvv~~~-------~~cp~~~~~~~ 71 (164)
.++.|.+ +|||.|+....
T Consensus 24 vvV~F~A~~~~~~~~WC~pCr~~~P 48 (119)
T cd02952 24 IFILFYGDKDPDGQSWCPDCVKAEP 48 (119)
T ss_pred EEEEEEccCCCCCCCCCHhHHhhch
Confidence 3555888 99999998763
No 311
>PLN02529 lysine-specific histone demethylase 1
Probab=76.15 E-value=1.5 Score=38.87 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=17.8
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.++|+|||||..|+.+|..|
T Consensus 160 ~~~v~viGaG~aGl~aA~~l 179 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQL 179 (738)
T ss_pred CCCEEEECcCHHHHHHHHHH
Confidence 47899999999999999765
No 312
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=76.07 E-value=1.3 Score=28.61 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=14.0
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|+...
T Consensus 20 vvv~F~a~wC~~Ck~~~ 36 (102)
T cd02948 20 TVVDVYQEWCGPCKAVV 36 (102)
T ss_pred EEEEEECCcCHhHHHHh
Confidence 45669999999999765
No 313
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=75.54 E-value=1.5 Score=29.55 Aligned_cols=17 Identities=29% Similarity=0.874 Sum_probs=13.4
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|.++||+.|+.-.
T Consensus 17 vVV~F~A~WCgpCk~m~ 33 (114)
T cd02954 17 VVIRFGRDWDPVCMQMD 33 (114)
T ss_pred EEEEEECCCChhHHHHH
Confidence 34559999999999654
No 314
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=75.52 E-value=2.7 Score=25.40 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=31.5
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEee
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIH 46 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~ 46 (164)
+..++.+.++.++.++++.... ....+.+.++...+.+|....+
T Consensus 14 v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~np~~~vP~l~~~ 57 (77)
T cd03057 14 PHIALEELGLPFELVRVDLRTK-TQKGADYLAINPKGQVPALVLD 57 (77)
T ss_pred HHHHHHHcCCCceEEEEecccC-ccCCHhHHHhCCCCCCCEEEEC
Confidence 4467888999999999887542 2233445567788999988765
No 315
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=75.39 E-value=12 Score=32.91 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=47.4
Q ss_pred eEEeeceEec----------CCceEEEeccC--CcccccccchhhHHH-HhhcCceEEee-EEEEeeC----cEEEe--C
Q psy7674 42 NIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKE-LEKNKIDYFNA-KAVFVDK----HRVKF--A 101 (164)
Q Consensus 42 ~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~-l~~~gv~~~~~-~~~~~~~----~~v~v--~ 101 (164)
.+.|++-.+| +.+++++.+.. .|+........+.+. +++.||+++.+ .+..++. ..+.+ .
T Consensus 315 VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~ 394 (659)
T PTZ00153 315 MGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHS 394 (659)
T ss_pred eEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEe
Confidence 4556665555 45666666533 333222222333343 46789999988 4445532 11333 1
Q ss_pred ----Ce----------eEEEEeceEEEecCCCCCCCC
Q psy7674 102 ----GE----------ERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 102 ----~~----------~~~~~~d~liiAtGs~~~~p~ 124 (164)
++ .+.+.+|.+++|||.+|+...
T Consensus 395 ~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 395 ERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred ccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 10 126899999999999987654
No 316
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=75.02 E-value=2.4 Score=27.63 Aligned_cols=18 Identities=28% Similarity=0.700 Sum_probs=14.1
Q ss_pred CceEEEeccCCccccccc
Q psy7674 53 NSVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 53 d~vvv~~~~~cp~~~~~~ 70 (164)
..++.|-.+|||+|+...
T Consensus 23 ~vvl~F~~~wC~~C~~~~ 40 (114)
T cd02967 23 PTLLFFLSPTCPVCKKLL 40 (114)
T ss_pred eEEEEEECCCCcchHhHh
Confidence 345668889999999865
No 317
>PLN02612 phytoene desaturase
Probab=74.92 E-value=2 Score=36.83 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=18.2
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
.+.+|+|||||..|+-+|..|
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l 112 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYL 112 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHH
Confidence 357899999999999998765
No 318
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=74.82 E-value=1.6 Score=38.00 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=17.3
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.-.|+|||||.+|+-+|..|
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~l 90 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDA 90 (627)
T ss_pred ccCEEEECCCHHHHHHHHHH
Confidence 35799999999999998765
No 319
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=74.80 E-value=2.6 Score=28.73 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=19.6
Q ss_pred ceEEE-eccCCcccccccch--hhHHHHhhcCceEE
Q psy7674 54 SVVIF-SKSWCPFCTKAKEN--NYEKELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~-~~~~cp~~~~~~~~--~~~~~l~~~gv~~~ 86 (164)
.+++| -.+|||+|...... .+.+.+++.|+.++
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv 61 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVELV 61 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEE
Confidence 34444 46899999976422 23344455677764
No 320
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=74.43 E-value=3 Score=24.84 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=31.2
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
+..++.+.|+.|+.+.++... .....+..+...+.+|....++.
T Consensus 15 v~~~l~~~gi~~e~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~ 58 (72)
T cd03039 15 IRLLLADAGVEYEDVRITYEE---WPELDLKPTLPFGQLPVLEIDGK 58 (72)
T ss_pred HHHHHHHCCCCcEEEEeCHHH---hhhhhhccCCcCCCCCEEEECCE
Confidence 456788999999999887542 12223556778899998876654
No 321
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=74.40 E-value=3.8 Score=24.63 Aligned_cols=43 Identities=9% Similarity=-0.004 Sum_probs=31.0
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
+..+|.+.++.|+.+.++.. ..++.+..+...+.+|.+..++.
T Consensus 16 v~~~L~~~~i~~e~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~ 58 (73)
T cd03076 16 IRLLLADQGISWEEERVTYE----EWQESLKPKMLFGQLPCFKDGDL 58 (73)
T ss_pred HHHHHHHcCCCCEEEEecHH----HhhhhhhccCCCCCCCEEEECCE
Confidence 34678889999999988752 23335556777888999977665
No 322
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=74.22 E-value=3.7 Score=26.97 Aligned_cols=17 Identities=18% Similarity=0.686 Sum_probs=13.9
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|+...
T Consensus 27 vlV~F~a~wC~~C~~~~ 43 (111)
T cd02963 27 YLIKITSDWCFSCIHIE 43 (111)
T ss_pred EEEEEECCccHhHHHhh
Confidence 45668899999999765
No 323
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=73.86 E-value=1.9 Score=39.54 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=17.5
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
..+|+|||||+.|+.+|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~a 182 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAA 182 (985)
T ss_pred cCCEEEECCCHHHHHHHHHH
Confidence 46799999999999999765
No 324
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=73.65 E-value=2.6 Score=27.73 Aligned_cols=33 Identities=24% Similarity=0.681 Sum_probs=20.0
Q ss_pred ceEEEecc-CCcccccccch--hhHHHHhhcCceEE
Q psy7674 54 SVVIFSKS-WCPFCTKAKEN--NYEKELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~~~~-~cp~~~~~~~~--~~~~~l~~~gv~~~ 86 (164)
.++.|-.+ |||+|...... .+...+++.++.++
T Consensus 28 ~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi 63 (124)
T PF00578_consen 28 VVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVI 63 (124)
T ss_dssp EEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred EEEEEeCccCccccccchhHHHHHhhhhccceEEee
Confidence 34445555 99999976522 23345566677764
No 325
>PRK08401 L-aspartate oxidase; Provisional
Probab=73.21 E-value=16 Score=30.48 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=32.3
Q ss_pred hhHHHHhhcCceEEeeEEEEee--CcEE---EeCCeeEEEEeceEEEecCCCCCC
Q psy7674 73 NYEKELEKNKIDYFNAKAVFVD--KHRV---KFAGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~~~~~~--~~~v---~v~~~~~~~~~d~liiAtGs~~~~ 122 (164)
.+.+.+++.|++++.+.++.+. ...+ .+++ ..+.++.+|+|||+....
T Consensus 125 ~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~g--~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 125 ILYKHARELGVNFIRGFAEELAIKNGKAYGVFLDG--ELLKFDATVIATGGFSGL 177 (466)
T ss_pred HHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEECC--EEEEeCeEEECCCcCcCC
Confidence 3456667789999877665542 2222 2244 568999999999986653
No 326
>PRK06834 hypothetical protein; Provisional
Probab=73.15 E-value=13 Score=31.29 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=32.9
Q ss_pred hHHHHhhcCceEEee-EEEEe--eCcEEEe---CCeeEEEEeceEEEecCCCCCCC
Q psy7674 74 YEKELEKNKIDYFNA-KAVFV--DKHRVKF---AGEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~--~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p 123 (164)
+.+.+++.|++++.+ +++.+ +...+.+ ++ ..+.+|++|.|.|+++.+.
T Consensus 106 L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g--~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 106 LAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDG--RTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCC--CEEEeCEEEEecCCCCCcH
Confidence 445567779999887 44444 2333333 33 5799999999999987653
No 327
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=72.86 E-value=2.3 Score=27.85 Aligned_cols=18 Identities=33% Similarity=1.143 Sum_probs=14.8
Q ss_pred ceEEEeccCCcccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAKE 71 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~ 71 (164)
.++.|..+|||.|...+.
T Consensus 24 vlv~f~a~wC~~C~~~~~ 41 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEA 41 (109)
T ss_pred EEEEEECCCCHHHHHHhH
Confidence 467788999999998763
No 328
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=72.50 E-value=3.7 Score=28.10 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=16.7
Q ss_pred eccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674 59 SKSWCPFCTKAKE--NNYEKELEKNKIDYF 86 (164)
Q Consensus 59 ~~~~cp~~~~~~~--~~~~~~l~~~gv~~~ 86 (164)
..+|||.|..... ..+.+.+++.++.++
T Consensus 37 ~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi 66 (149)
T cd03018 37 PLAFTPVCTKELCALRDSLELFEAAGAEVL 66 (149)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHhCCCEEE
Confidence 3799999986431 123344455577764
No 329
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=72.36 E-value=2.3 Score=27.11 Aligned_cols=16 Identities=31% Similarity=1.070 Sum_probs=14.0
Q ss_pred eEEEeccCCccccccc
Q psy7674 55 VVIFSKSWCPFCTKAK 70 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~ 70 (164)
++.|..+|||+|....
T Consensus 20 lv~f~a~wC~~C~~~~ 35 (101)
T cd02994 20 MIEFYAPWCPACQQLQ 35 (101)
T ss_pred EEEEECCCCHHHHHHh
Confidence 6779999999999866
No 330
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=71.86 E-value=1.3 Score=27.11 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=23.7
Q ss_pred cccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 4 IQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 4 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
-++++++++++++++ .+.++. . .-|-.++|.++|||+
T Consensus 22 ~~~~~~~i~~ei~~~------~~~~~~-~-~ygv~~vPalvIng~ 58 (76)
T PF13192_consen 22 EAAEELGIEVEIIDI------EDFEEI-E-KYGVMSVPALVINGK 58 (76)
T ss_dssp HHHHHTTEEEEEEET------TTHHHH-H-HTT-SSSSEEEETTE
T ss_pred HHHHhcCCeEEEEEc------cCHHHH-H-HcCCCCCCEEEECCE
Confidence 345556677777765 223333 2 348899999999997
No 331
>PRK09381 trxA thioredoxin; Provisional
Probab=71.77 E-value=2.5 Score=27.40 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=13.9
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+|||+|+...
T Consensus 24 vvv~f~~~~C~~C~~~~ 40 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIA 40 (109)
T ss_pred EEEEEECCCCHHHHHHh
Confidence 45668889999999876
No 332
>PLN02661 Putative thiazole synthesis
Probab=71.28 E-value=2.2 Score=34.53 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=17.0
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
-.|+|||||..|+-+|..|
T Consensus 93 ~DVlIVGaG~AGl~AA~~L 111 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYEL 111 (357)
T ss_pred CCEEEECCHHHHHHHHHHH
Confidence 4799999999999998776
No 333
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=71.26 E-value=11 Score=31.31 Aligned_cols=46 Identities=9% Similarity=0.166 Sum_probs=30.9
Q ss_pred hhhHHHHhhcCceEEeeE-EEEeeC-cE--EEeCCeeEEEEeceEEEecCCC
Q psy7674 72 NNYEKELEKNKIDYFNAK-AVFVDK-HR--VKFAGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 72 ~~~~~~l~~~gv~~~~~~-~~~~~~-~~--v~v~~~~~~~~~d~liiAtGs~ 119 (164)
..+.+.+++.|++++.++ +..++. .. +..++ ..+.+|++|+|||+.
T Consensus 187 ~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~--g~v~A~~VV~Atga~ 236 (460)
T TIGR03329 187 RGLRRVALELGVEIHENTPMTGLEEGQPAVVRTPD--GQVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHcCCEEECCCeEEEEeeCCceEEEeCC--cEEECCEEEEccccc
Confidence 345566778899998874 445542 22 33233 368999999999975
No 334
>PHA02278 thioredoxin-like protein
Probab=71.05 E-value=2.2 Score=28.03 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=13.8
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|.++||+.|+.-.
T Consensus 17 vvV~F~A~WCgpCk~m~ 33 (103)
T PHA02278 17 VIVMITQDNCGKCEILK 33 (103)
T ss_pred EEEEEECCCCHHHHhHH
Confidence 35569999999999765
No 335
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=70.92 E-value=2.9 Score=26.48 Aligned_cols=17 Identities=29% Similarity=0.811 Sum_probs=14.0
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||++|+...
T Consensus 21 ~~v~f~a~~C~~C~~~~ 37 (105)
T cd02998 21 VLVEFYAPWCGHCKNLA 37 (105)
T ss_pred EEEEEECCCCHHHHhhC
Confidence 36678899999999775
No 336
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=70.86 E-value=2.6 Score=37.78 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=17.6
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.++|+|||||..|+-+|..|
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L 257 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQL 257 (808)
T ss_pred CCCEEEECcCHHHHHHHHHH
Confidence 36899999999999999765
No 337
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=70.75 E-value=1.3 Score=26.69 Aligned_cols=46 Identities=15% Similarity=0.292 Sum_probs=32.6
Q ss_pred ccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEe-ece
Q psy7674 3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFI-HGK 48 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i-~~~ 48 (164)
.++++++|+.+++..++..+++......+.++.+.++||.... +|+
T Consensus 9 ~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~ 55 (70)
T PF13409_consen 9 RIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGT 55 (70)
T ss_dssp HHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTE
T ss_pred HHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCC
Confidence 4567788999988888554444444456677889999999987 455
No 338
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=70.69 E-value=2.8 Score=26.82 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=14.0
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|+...
T Consensus 21 ~~v~f~a~wC~~C~~~~ 37 (101)
T cd03003 21 WFVNFYSPRCSHCHDLA 37 (101)
T ss_pred EEEEEECCCChHHHHhH
Confidence 36778899999999765
No 339
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=70.61 E-value=2.8 Score=26.01 Aligned_cols=17 Identities=29% Similarity=0.788 Sum_probs=14.5
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.+++|..+||++|....
T Consensus 18 ~~v~f~~~~C~~C~~~~ 34 (101)
T cd02961 18 VLVEFYAPWCGHCKALA 34 (101)
T ss_pred EEEEEECCCCHHHHhhh
Confidence 46778999999999876
No 340
>PLN03000 amine oxidase
Probab=70.55 E-value=2.4 Score=38.34 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=17.9
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.++|+|||+|+.|+.+|..|
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L 203 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQL 203 (881)
T ss_pred CCCEEEECccHHHHHHHHHH
Confidence 37899999999999999866
No 341
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=70.52 E-value=2.8 Score=26.54 Aligned_cols=17 Identities=29% Similarity=0.825 Sum_probs=14.2
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|+...
T Consensus 19 ~lv~f~a~wC~~C~~~~ 35 (102)
T cd03005 19 HFVKFFAPWCGHCKRLA 35 (102)
T ss_pred EEEEEECCCCHHHHHhC
Confidence 46778999999999865
No 342
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=70.20 E-value=5.1 Score=27.35 Aligned_cols=41 Identities=15% Similarity=0.349 Sum_probs=29.3
Q ss_pred CCCCCccEEEEecCCCCh----hHHHHHHHhhcCCCCcceEEeece
Q psy7674 7 APPDYNFQVVELDKLPNG----AQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 7 ~~~~~~~~~~~i~~~~~~----~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
++.|+.+..+.+..+|.. +.+.+.|+. .|...-|.++|+|+
T Consensus 37 k~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~-~G~e~LPitlVdGe 81 (123)
T PF06953_consen 37 KEQGVEVERYNLAQNPQAFVENPEVNQLLQT-EGAEALPITLVDGE 81 (123)
T ss_dssp HHTT-EEEEEETTT-TTHHHHSHHHHHHHHH-H-GGG-SEEEETTE
T ss_pred HhCCceEEEEccccCHHHHHhCHHHHHHHHH-cCcccCCEEEECCE
Confidence 567999999999999855 455566653 48999999999999
No 343
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=70.07 E-value=3.8 Score=31.38 Aligned_cols=20 Identities=25% Similarity=0.660 Sum_probs=16.3
Q ss_pred cCCceEEEeccCCccccccc
Q psy7674 51 DNNSVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 51 g~d~vvv~~~~~cp~~~~~~ 70 (164)
+...+++|+-..||||++.-
T Consensus 117 ak~~I~vFtDp~CpyC~kl~ 136 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFW 136 (251)
T ss_pred CCeEEEEEECCCChhHHHHH
Confidence 34568889999999999764
No 344
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=69.99 E-value=2.9 Score=26.92 Aligned_cols=17 Identities=35% Similarity=0.931 Sum_probs=14.2
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||++|....
T Consensus 21 ~lv~f~a~wC~~C~~~~ 37 (109)
T cd03002 21 TLVEFYAPWCGHCKNLK 37 (109)
T ss_pred EEEEEECCCCHHHHhhC
Confidence 46778899999999765
No 345
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=69.99 E-value=2.6 Score=29.20 Aligned_cols=17 Identities=29% Similarity=0.915 Sum_probs=13.7
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||++|....
T Consensus 23 vvV~F~A~WC~~C~~~~ 39 (142)
T cd02950 23 TLVEFYADWCTVCQEMA 39 (142)
T ss_pred EEEEEECCcCHHHHHhH
Confidence 45568999999999765
No 346
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=69.78 E-value=13 Score=30.34 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=33.5
Q ss_pred hhHHHHhhcCceEEeeEEEEee-------CcEEEe---C-----CeeEEEEeceEEEecCCCCCCC
Q psy7674 73 NYEKELEKNKIDYFNAKAVFVD-------KHRVKF---A-----GEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~~~~~~-------~~~v~v---~-----~~~~~~~~d~liiAtGs~~~~p 123 (164)
.+.+.+.+.|++++.+++..+. ...+++ + ++...+.++.+|.|+|+++.+.
T Consensus 98 ~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~ 163 (398)
T TIGR02028 98 FLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVA 163 (398)
T ss_pred HHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHH
Confidence 3455667789999888765441 112332 1 3234789999999999877653
No 347
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=69.56 E-value=2.9 Score=28.13 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=11.0
Q ss_pred EeccCCccccccc
Q psy7674 58 FSKSWCPFCTKAK 70 (164)
Q Consensus 58 ~~~~~cp~~~~~~ 70 (164)
|.++|||.|+.-.
T Consensus 21 F~a~WC~pCk~md 33 (114)
T cd02986 21 FGRDEDAVCLQLD 33 (114)
T ss_pred EeCCCChhHHHHH
Confidence 9999999998643
No 348
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=69.45 E-value=3.2 Score=26.16 Aligned_cols=17 Identities=29% Similarity=0.811 Sum_probs=14.3
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.+++|..+||++|+...
T Consensus 16 ~~i~f~~~~C~~c~~~~ 32 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLA 32 (102)
T ss_pred EEEEEECCCCHHHHhhC
Confidence 46779999999999865
No 349
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=69.41 E-value=15 Score=24.74 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=35.2
Q ss_pred cEEEeCCeeEEEEeceEEEecCCCCCCCCCCC----ccceechhhhccCcCCCCcEEEECCcHHHH
Q psy7674 96 HRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG----AHLGITSDDLFSLNKDPGKVLLVGASYIAL 157 (164)
Q Consensus 96 ~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g----~~~v~~~~~~~~~~~~~~~vvViGgG~~g~ 157 (164)
..+.+++ ..+..|.++...|..+..+...+ ...-.+.+++..+....-.++|||-|.-+.
T Consensus 8 G~i~i~g--~~y~~~viv~p~~~~~w~~~~~s~~~~~~~~l~~~~l~~ll~~~peivliGTG~~~~ 71 (117)
T cd05126 8 GSITVGG--ETYEHDIVVYPDGSRARRWKELSKKTGTSHGLQPEELEELLEEGVEVIVIGTGQSGA 71 (117)
T ss_pred CEEEECC--EEEcCCEEEeCCccccccccccccccCCcccCCHHHHHHHHhcCCCEEEEcCCCCcc
Confidence 4466677 67888878877776654333221 111234455544433334599999887653
No 350
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=69.26 E-value=3.1 Score=26.98 Aligned_cols=16 Identities=31% Similarity=0.781 Sum_probs=13.7
Q ss_pred eEEEeccCCccccccc
Q psy7674 55 VVIFSKSWCPFCTKAK 70 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~ 70 (164)
++.|..+||++|+...
T Consensus 22 lv~F~a~wC~~C~~~~ 37 (108)
T cd02996 22 LVNFYADWCRFSQMLH 37 (108)
T ss_pred EEEEECCCCHHHHhhH
Confidence 5668899999999876
No 351
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=69.24 E-value=16 Score=29.05 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=45.7
Q ss_pred CCceEEEeccCCc--ccc-cccchhhHHHHhhcCceEEeeE-EEEeeCc----E---EEe-CCeeEEEEeceEEEecCCC
Q psy7674 52 NNSVVIFSKSWCP--FCT-KAKENNYEKELEKNKIDYFNAK-AVFVDKH----R---VKF-AGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 52 ~d~vvv~~~~~cp--~~~-~~~~~~~~~~l~~~gv~~~~~~-~~~~~~~----~---v~v-~~~~~~~~~d~liiAtGs~ 119 (164)
+-+++++.+..-+ .-. +.....+.+.++++||+++.+. ...++.+ . +.. ++ ..+++|.+++++|.+
T Consensus 159 G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~g~~ 236 (415)
T COG0446 159 GKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG--EEIKADLVIIGPGER 236 (415)
T ss_pred CCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC--cEEEeeEEEEeeccc
Confidence 5677777765544 111 3445567788999999998874 4556532 1 122 44 679999999999999
Q ss_pred CC
Q psy7674 120 PT 121 (164)
Q Consensus 120 ~~ 121 (164)
|+
T Consensus 237 p~ 238 (415)
T COG0446 237 PN 238 (415)
T ss_pred cc
Confidence 85
No 352
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=69.11 E-value=13 Score=28.83 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=31.3
Q ss_pred hhHHHHhhcCceEEee-EEEEee--CcEEE-e--CCeeEEEEeceEEEecCCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVD--KHRVK-F--AGEERTVSAQNFIIAVGGRP 120 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~v~-v--~~~~~~~~~d~liiAtGs~~ 120 (164)
.+.+.+.+.|++++.+ ++..+. ...+. + ++ ..+.+|.+|+|+|+..
T Consensus 142 ~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~--g~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 142 ALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPS--GDVQADQVVLAAGAWA 193 (337)
T ss_pred HHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCC--CEEECCEEEEcCChhh
Confidence 4556778889999887 555553 23222 3 33 3689999999999653
No 353
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=69.01 E-value=1.5 Score=37.07 Aligned_cols=43 Identities=19% Similarity=0.428 Sum_probs=29.2
Q ss_pred hhcCceEEeeEEEEe---eCcEEEe------CCeeEEEEeceEEEecCCCCC
Q psy7674 79 EKNKIDYFNAKAVFV---DKHRVKF------AGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 79 ~~~gv~~~~~~~~~~---~~~~v~v------~~~~~~~~~d~liiAtGs~~~ 121 (164)
.+.||+|+.|....+ +...+.+ .+...++.||.+++|||-.|.
T Consensus 426 ~~~gV~fIRGrvaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~ 477 (622)
T COG1148 426 EDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPS 477 (622)
T ss_pred hhhchhhhcCChHHheeCCCCeeEEEEEeccCccceecccceEEEeeccccC
Confidence 367999999965332 2223333 344467899999999997763
No 354
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=69.00 E-value=3.1 Score=26.91 Aligned_cols=17 Identities=18% Similarity=0.040 Sum_probs=13.6
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|+...
T Consensus 18 vvv~F~a~wC~~C~~~~ 34 (103)
T cd02985 18 VVLEFALKHSGPSVKIY 34 (103)
T ss_pred EEEEEECCCCHhHHHHh
Confidence 35569999999999764
No 355
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=68.93 E-value=1.6 Score=29.90 Aligned_cols=17 Identities=18% Similarity=0.911 Sum_probs=11.7
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.+.+++.+|||+|....
T Consensus 44 ~ilvi~e~WCgD~~~~v 60 (129)
T PF14595_consen 44 NILVITETWCGDCARNV 60 (129)
T ss_dssp EEEEE--TT-HHHHHHH
T ss_pred EEEEEECCCchhHHHHH
Confidence 57889999999999865
No 356
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=68.82 E-value=4.3 Score=25.67 Aligned_cols=18 Identities=39% Similarity=0.809 Sum_probs=13.9
Q ss_pred CceEEEeccCCccccccc
Q psy7674 53 NSVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 53 d~vvv~~~~~cp~~~~~~ 70 (164)
-.++.|..+|||+|....
T Consensus 21 ~~ll~f~~~~C~~C~~~~ 38 (116)
T cd02966 21 VVLVNFWASWCPPCRAEM 38 (116)
T ss_pred EEEEEeecccChhHHHHh
Confidence 356668889999998754
No 357
>PLN02487 zeta-carotene desaturase
Probab=68.70 E-value=3.1 Score=35.85 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=16.9
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
++|+|||||..|+-+|..|
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L 94 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVEL 94 (569)
T ss_pred CeEEEECCCHHHHHHHHHH
Confidence 4899999999999998765
No 358
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=68.66 E-value=3.2 Score=26.12 Aligned_cols=17 Identities=24% Similarity=0.553 Sum_probs=13.8
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|.++||+.|+...
T Consensus 17 v~v~f~~~~C~~C~~~~ 33 (97)
T cd02984 17 LVLHFWAPWAEPCKQMN 33 (97)
T ss_pred EEEEEECCCCHHHHHHh
Confidence 35668899999999776
No 359
>PTZ00051 thioredoxin; Provisional
Probab=68.49 E-value=3.4 Score=26.04 Aligned_cols=17 Identities=29% Similarity=0.784 Sum_probs=14.0
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|+...
T Consensus 21 vli~f~~~~C~~C~~~~ 37 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIA 37 (98)
T ss_pred EEEEEECCCCHHHHHHh
Confidence 45668899999999876
No 360
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=68.48 E-value=2.6 Score=26.59 Aligned_cols=17 Identities=47% Similarity=1.015 Sum_probs=14.0
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|.++||+.|..-.
T Consensus 20 vvv~f~~~~C~~C~~~~ 36 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFK 36 (103)
T ss_dssp EEEEEESTTSHHHHHHH
T ss_pred EEEEEeCCCCCcccccc
Confidence 45668899999999865
No 361
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=68.47 E-value=4.4 Score=29.54 Aligned_cols=20 Identities=30% Similarity=0.808 Sum_probs=17.1
Q ss_pred cCCceEEEeccCCccccccc
Q psy7674 51 DNNSVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 51 g~d~vvv~~~~~cp~~~~~~ 70 (164)
+...+++|+...||||+...
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~ 96 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLE 96 (197)
T ss_pred CCEEEEEEECCCCccHHHHH
Confidence 46678889999999999876
No 362
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=68.37 E-value=3 Score=27.84 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=13.9
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||++|+...
T Consensus 32 vlV~FyA~WC~~Ck~l~ 48 (113)
T cd03006 32 SLVMYYAPWDAQSQAAR 48 (113)
T ss_pred EEEEEECCCCHHHHHHH
Confidence 45668999999999765
No 363
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=68.19 E-value=5.3 Score=24.36 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=30.9
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEee
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIH 46 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~ 46 (164)
+..+++++++.|+.++++.... ....+.+.++...+.+|.+..+
T Consensus 15 v~~~l~~~gl~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~ 58 (81)
T cd03048 15 VSIMLEELGLPYEIHPVDISKG-EQKKPEFLKINPNGRIPAIVDH 58 (81)
T ss_pred HHHHHHHcCCCcEEEEecCcCC-cccCHHHHHhCcCCCCCEEEeC
Confidence 4567889999999999886432 2233345457788899988665
No 364
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=68.15 E-value=2.3 Score=27.39 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=29.9
Q ss_pred ccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
.+.|.++++.|+++++|..... +.+.++.=.+.+|...-++.
T Consensus 29 rl~L~eKgi~ye~~~vd~~~~p----~~~~~~nP~g~vPvL~~~~~ 70 (91)
T cd03061 29 FMVLWLKGVVFNVTTVDMKRKP----EDLKDLAPGTQPPFLLYNGE 70 (91)
T ss_pred HHHHHHCCCceEEEEeCCCCCC----HHHHHhCCCCCCCEEEECCE
Confidence 4567889999999999876432 33556666688996665555
No 365
>PRK07190 hypothetical protein; Provisional
Probab=67.95 E-value=15 Score=30.96 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=31.6
Q ss_pred hHHHHhhcCceEEee-EEEEe--eCcEEE--e-CCeeEEEEeceEEEecCCCCC
Q psy7674 74 YEKELEKNKIDYFNA-KAVFV--DKHRVK--F-AGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~--~~~~v~--v-~~~~~~~~~d~liiAtGs~~~ 121 (164)
+.+.+++.|++++.+ +++.+ +...+. + ++ +.+.++++|.|+|++..
T Consensus 115 L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g--~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 115 LDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNG--ERIQSRYVIGADGSRSF 166 (487)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCC--cEEEeCEEEECCCCCHH
Confidence 345566789999887 44544 233333 3 44 57999999999999774
No 366
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=67.40 E-value=4.7 Score=28.77 Aligned_cols=31 Identities=26% Similarity=0.556 Sum_probs=19.1
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
.++.|..+|||.|+..... + +.+.+.++.++
T Consensus 66 vll~F~a~wC~~C~~~~p~-l-~~l~~~~~~vi 96 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPY-L-NELAKDGLPIV 96 (173)
T ss_pred EEEEEECCcCHHHHHHHHH-H-HHHHHcCCEEE
Confidence 3445889999999976422 2 22344566654
No 367
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=67.35 E-value=22 Score=29.02 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=31.0
Q ss_pred hhHHHHhhcCceEEee-EEEEee--CcEEEe--CCeeEEEEeceEEEecCCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVD--KHRVKF--AGEERTVSAQNFIIAVGGRP 120 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~~~~~~d~liiAtGs~~ 120 (164)
.+.+.+++.+++++.+ .+..+. ...+.+ ++ ..+.+|++|+|||...
T Consensus 110 ~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~--~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 110 ALLNELKELGVEILTNSKVKSIKKDDNGFGVETSG--GEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECC--cEEEcCEEEECCCCcc
Confidence 3456677889999887 455543 222333 43 5689999999999754
No 368
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=66.82 E-value=3.1 Score=25.80 Aligned_cols=22 Identities=32% Similarity=0.762 Sum_probs=16.8
Q ss_pred ceEEEeccCCcccccccchhhHHHHhh
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEK 80 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~ 80 (164)
.+++|+++.|+.|..++ ..+++
T Consensus 1 ~l~l~~k~~C~LC~~a~-----~~L~~ 22 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAK-----EILEE 22 (81)
T ss_dssp -EEEEE-SSSHHHHHHH-----HHHHH
T ss_pred CEEEEcCCCCChHHHHH-----HHHHH
Confidence 37899999999999988 55554
No 369
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.82 E-value=3.9 Score=25.43 Aligned_cols=25 Identities=36% Similarity=0.771 Sum_probs=21.8
Q ss_pred EEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 56 VIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 56 vv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
++|....||.|.+++ +.+++.++++
T Consensus 5 ~lfgsn~Cpdca~a~-----eyl~rl~v~y 29 (85)
T COG4545 5 KLFGSNLCPDCAPAV-----EYLERLNVDY 29 (85)
T ss_pred eeeccccCcchHHHH-----HHHHHcCCCc
Confidence 677888899999999 8888888887
No 370
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=66.73 E-value=6.3 Score=23.55 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=32.0
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
+.+++.++++.|+.+.++.... ....+.+.++...+.+|....+|.
T Consensus 16 v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~P~~~vP~l~~~g~ 61 (76)
T cd03053 16 VLLCLEEKGVDYELVPVDLTKG-EHKSPEHLARNPFGQIPALEDGDL 61 (76)
T ss_pred HHHHHHHcCCCcEEEEeCcccc-ccCCHHHHhhCCCCCCCEEEECCE
Confidence 3467888999999998876532 223345656778899998765544
No 371
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=66.71 E-value=4 Score=25.51 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=13.8
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||++|+...
T Consensus 17 vvi~f~~~~C~~C~~~~ 33 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIA 33 (101)
T ss_pred EEEEEECCCCHHHHHhC
Confidence 35668889999999876
No 372
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=66.50 E-value=7.1 Score=19.86 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=18.5
Q ss_pred cEEEEecCCCChhHHHHHHHhhcCCCCcc
Q psy7674 13 FQVVELDKLPNGAQIQTALFERTGQKTVP 41 (164)
Q Consensus 13 ~~~~~i~~~~~~~~~~~~l~~~~g~~~vp 41 (164)
.+++.. |.+.+++.++++||..+-|
T Consensus 5 p~vi~~----d~~~Fr~lVQ~LTG~~~~~ 29 (31)
T PF05678_consen 5 PTVIHT----DPSNFRALVQRLTGAPSAP 29 (31)
T ss_pred CEEEEe----CHHHHHHHHHHhHCcCCCC
Confidence 455543 3478999999999988655
No 373
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=66.48 E-value=19 Score=28.92 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=31.6
Q ss_pred hHHHHhhcCceEEee-EEEEee--CcEEEe---CCeeEEEEeceEEEecCCCCCC
Q psy7674 74 YEKELEKNKIDYFNA-KAVFVD--KHRVKF---AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~~~~~~~~~d~liiAtGs~~~~ 122 (164)
+.+.+++.|++++.+ +++.+. ...+.+ ++ ..+.+|.+|.|+|..+.+
T Consensus 119 L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~a~~vV~AdG~~S~v 171 (392)
T PRK08773 119 LWAALHAAGVQLHCPARVVALEQDADRVRLRLDDG--RRLEAALAIAADGAASTL 171 (392)
T ss_pred HHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCC--CEEEeCEEEEecCCCchH
Confidence 445566779999877 444442 233333 34 578999999999988754
No 374
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=66.46 E-value=6.7 Score=23.37 Aligned_cols=46 Identities=7% Similarity=-0.075 Sum_probs=31.3
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
+.++|.++++.|+.++++.... ....+.+.++...+.+|....++.
T Consensus 15 v~~~L~~~~l~~~~~~~~~~~~-~~~~~~~~~~nP~~~vP~L~~~~~ 60 (73)
T cd03047 15 VLWLLDELGLPYERIDAGGQFG-GLDTPEFLAMNPNGRVPVLEDGDF 60 (73)
T ss_pred HHHHHHHcCCCCEEEEeccccc-cccCHHHHhhCCCCCCCEEEECCE
Confidence 3467889999999998875432 222234445678889999866654
No 375
>KOG0024|consensus
Probab=66.45 E-value=7.8 Score=31.07 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=13.8
Q ss_pred CCcEEEECCcHHHHHh
Q psy7674 144 PGKVLLVGASYIALEC 159 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~ 159 (164)
+.+++|+|+|++|+-.
T Consensus 170 Gs~vLV~GAGPIGl~t 185 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLT 185 (354)
T ss_pred CCeEEEECCcHHHHHH
Confidence 5789999999999854
No 376
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=66.25 E-value=4 Score=25.64 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=14.0
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|....
T Consensus 15 vlv~f~a~wC~~C~~~~ 31 (96)
T cd02956 15 VVVDFWAPRSPPSKELL 31 (96)
T ss_pred EEEEEECCCChHHHHHH
Confidence 45668899999999876
No 377
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=66.07 E-value=5.2 Score=28.10 Aligned_cols=17 Identities=29% Similarity=0.720 Sum_probs=12.9
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|-.+|||+|....
T Consensus 64 ~~l~f~a~~C~~C~~~~ 80 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEM 80 (173)
T ss_pred EEEEEECCcCHHHHHHH
Confidence 44557789999998654
No 378
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=65.89 E-value=18 Score=29.19 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=29.8
Q ss_pred hHHHHhhcCceEEee-EEEEee--CcE---EEeCCeeEEEEeceEEEecCCC
Q psy7674 74 YEKELEKNKIDYFNA-KAVFVD--KHR---VKFAGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~~--~~~---v~v~~~~~~~~~d~liiAtGs~ 119 (164)
+.+.+++.|++++.+ .++.++ ... +..++ ..+.+|++|+|+|..
T Consensus 207 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~--~~~~a~~VV~a~G~~ 256 (416)
T PRK00711 207 LAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGG--GVITADAYVVALGSY 256 (416)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCC--cEEeCCEEEECCCcc
Confidence 445667789999876 555553 222 22243 468899999999974
No 379
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=65.87 E-value=4.4 Score=27.00 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.9
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+.+|..+.|.-|++++ .+|+++|+++.
T Consensus 1 i~iy~~~~C~t~rkA~-----~~L~~~~i~~~ 27 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTL-----ALLEDKGIEPE 27 (114)
T ss_pred CEEEECCCCHHHHHHH-----HHHHHCCCCeE
Confidence 4689999999999999 88999999974
No 380
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=65.82 E-value=20 Score=28.76 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=32.9
Q ss_pred hhHHHHhhcCceEEee-EEEEee--CcEEEe---CCeeEEEEeceEEEecCCCCCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVD--KHRVKF---AGEERTVSAQNFIIAVGGRPTYP 123 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~~~~~~~~~d~liiAtGs~~~~p 123 (164)
.+.+.+++.|++++.+ +++.++ ...+.+ ++ ..+.+|.+|.|+|..+.+.
T Consensus 116 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vI~AdG~~S~vr 170 (403)
T PRK07333 116 ALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDG--SVLEARLLVAADGARSKLR 170 (403)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCC--CEEEeCEEEEcCCCChHHH
Confidence 3455566779999876 455553 333333 44 5789999999999876543
No 381
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=65.22 E-value=7 Score=27.79 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=17.7
Q ss_pred ccCCcccccccch--hhHHHHhhcCceEE
Q psy7674 60 KSWCPFCTKAKEN--NYEKELEKNKIDYF 86 (164)
Q Consensus 60 ~~~cp~~~~~~~~--~~~~~l~~~gv~~~ 86 (164)
.+|||.|...... .+.+.+.+.|+.++
T Consensus 39 ~~~c~~C~~~l~~l~~~~~~~~~~~v~vv 67 (173)
T cd03015 39 LDFTFVCPTEIIAFSDRYEEFKKLNAEVL 67 (173)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHCCCEEE
Confidence 7999999986422 23344556677764
No 382
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=65.16 E-value=3.6 Score=32.85 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=34.6
Q ss_pred EEEEeceEEEecCCCCCCCC---CCCccce-echhhhccCc------------CCCCcEEEECCcHHHHHhhcc
Q psy7674 105 RTVSAQNFIIAVGGRPTYPD---IPGAHLG-ITSDDLFSLN------------KDPGKVLLVGASYIALECAGC 162 (164)
Q Consensus 105 ~~~~~d~liiAtGs~~~~p~---i~g~~~v-~~~~~~~~~~------------~~~~~vvViGgG~~g~E~A~~ 162 (164)
..+.|+.+..+-|..|-+-| +-|.-.+ ....-+.+.+ -.+.+|+|+|||.+|.|.|..
T Consensus 113 taIayETV~~~~g~lPlLaPMSeVAGrla~q~Ga~~lek~~GG~GvllgGvpGV~~~kv~iiGGGvvgtnaAki 186 (371)
T COG0686 113 TAIAYETVQLPDGNLPLLAPMSEVAGRLAAQAGAYYLEKTNGGKGVLLGGVPGVLPAKVVVLGGGVVGTNAAKI 186 (371)
T ss_pred ceEEEEEEEcCCCCCcccchHHHHhhhHHHHHHHHHHHhccCCceeEecCCCCCCCccEEEECCccccchHHHH
Confidence 46888888888887776544 2331000 0001111000 135789999999999999864
No 383
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=64.64 E-value=7.3 Score=23.13 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=29.0
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEe
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~i 50 (164)
+..+|+.+++.|+.++++... ++..+.+|.+..+|..+
T Consensus 22 v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~vP~l~~~g~~l 59 (72)
T cd03054 22 VETYLRMAGIPYEVVFSSNPW-----------RSPTGKLPFLELNGEKI 59 (72)
T ss_pred HHHHHHhCCCceEEEecCCcc-----------cCCCcccCEEEECCEEE
Confidence 456788999999999887642 45677899998887633
No 384
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=64.39 E-value=20 Score=28.55 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=31.3
Q ss_pred HHHHhhcCceEEeeE-EEEeeC-cE---EEe-------------------CCeeEEEEeceEEEecCCCCCC
Q psy7674 75 EKELEKNKIDYFNAK-AVFVDK-HR---VKF-------------------AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 75 ~~~l~~~gv~~~~~~-~~~~~~-~~---v~v-------------------~~~~~~~~~d~liiAtGs~~~~ 122 (164)
...++++||+++.+. ...+.. .. +++ +++...+.+|.+++++|.+|..
T Consensus 217 ~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 288 (352)
T PRK12770 217 IERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP 288 (352)
T ss_pred HHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc
Confidence 355788999998873 333321 11 211 2223579999999999999864
No 385
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=64.34 E-value=7.4 Score=26.20 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=16.2
Q ss_pred ccCCcccccccch--hhHHHHhhcCceEE
Q psy7674 60 KSWCPFCTKAKEN--NYEKELEKNKIDYF 86 (164)
Q Consensus 60 ~~~cp~~~~~~~~--~~~~~l~~~gv~~~ 86 (164)
..|||+|...... ...+.+++.++.++
T Consensus 33 ~~~cp~C~~~~~~l~~~~~~~~~~~~~vv 61 (140)
T cd03017 33 KDDTPGCTKEACDFRDLYEEFKALGAVVI 61 (140)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHCCCEEE
Confidence 5889999975421 22334455677664
No 386
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=64.28 E-value=4.9 Score=26.70 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.8
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+.+|..+.|.-|++++ .+|+++++++.
T Consensus 1 i~iy~~~~C~t~rkA~-----~~L~~~~i~~~ 27 (112)
T cd03034 1 ITIYHNPRCSKSRNAL-----ALLEEAGIEPE 27 (112)
T ss_pred CEEEECCCCHHHHHHH-----HHHHHCCCCeE
Confidence 4689999999999999 88999998884
No 387
>PRK06184 hypothetical protein; Provisional
Probab=63.74 E-value=22 Score=29.81 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=32.5
Q ss_pred hHHHHhhcCceEEee-EEEEee--CcEEE--e--CCeeEEEEeceEEEecCCCCCC
Q psy7674 74 YEKELEKNKIDYFNA-KAVFVD--KHRVK--F--AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~~--~~~v~--v--~~~~~~~~~d~liiAtGs~~~~ 122 (164)
+.+.+.+.|+++..+ +++.++ ...++ + .++.+.+.+|++|.|+|++..+
T Consensus 115 L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~v 170 (502)
T PRK06184 115 LRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFV 170 (502)
T ss_pred HHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHH
Confidence 445566779999887 455553 22233 3 1323679999999999988653
No 388
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=63.57 E-value=25 Score=29.34 Aligned_cols=49 Identities=29% Similarity=0.424 Sum_probs=30.8
Q ss_pred hHHHHhhcCceEEeeEEEEe--e-Cc---EEEe-CCeeEEEEeceEEEecCCCCCCCC
Q psy7674 74 YEKELEKNKIDYFNAKAVFV--D-KH---RVKF-AGEERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~--~-~~---~v~v-~~~~~~~~~d~liiAtGs~~~~p~ 124 (164)
+.+...+.|++++.++++.+ + .. .+.+ ++ .++.+|.+|=|||.+..+..
T Consensus 160 L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g--~~i~ad~~IDASG~~s~L~~ 215 (454)
T PF04820_consen 160 LRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDG--RTIEADFFIDASGRRSLLAR 215 (454)
T ss_dssp HHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTS--EEEEESEEEE-SGGG-CCCC
T ss_pred HHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCC--CEEEEeEEEECCCccchhhH
Confidence 55666778999999977654 2 22 2333 44 78999999999997665443
No 389
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=63.41 E-value=4.5 Score=25.56 Aligned_cols=17 Identities=29% Similarity=0.788 Sum_probs=13.9
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||++|....
T Consensus 21 ~~v~f~~~~C~~C~~~~ 37 (104)
T cd02995 21 VLVEFYAPWCGHCKALA 37 (104)
T ss_pred EEEEEECCCCHHHHHHh
Confidence 45678899999999754
No 390
>KOG0907|consensus
Probab=63.28 E-value=4.8 Score=26.63 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=12.0
Q ss_pred EEeccCCccccccc
Q psy7674 57 IFSKSWCPFCTKAK 70 (164)
Q Consensus 57 v~~~~~cp~~~~~~ 70 (164)
-|..+||+.|+.-.
T Consensus 27 dF~a~wCgPCk~i~ 40 (106)
T KOG0907|consen 27 DFYATWCGPCKAIA 40 (106)
T ss_pred EEECCCCcchhhhh
Confidence 38999999999765
No 391
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=63.20 E-value=3.6 Score=34.45 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=18.4
Q ss_pred CCcEEEECCcHHHHHhhcccC
Q psy7674 144 PGKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l~ 164 (164)
.++|+|||+|+.|+.+|..|+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~ 143 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLS 143 (457)
T ss_pred CCEEEEECCCchHhhhHHHHH
Confidence 489999999999999988763
No 392
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=62.91 E-value=4.8 Score=25.76 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=13.6
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|....
T Consensus 22 v~v~f~a~wC~~C~~~~ 38 (104)
T cd03004 22 WLVDFYAPWCGPCQALL 38 (104)
T ss_pred EEEEEECCCCHHHHHHH
Confidence 35668889999999765
No 393
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=62.79 E-value=22 Score=28.65 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=31.0
Q ss_pred hhHHHHhhcCceEEee-EEEEee--CcEEEe--CCeeEEEEeceEEEecCCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVD--KHRVKF--AGEERTVSAQNFIIAVGGRP 120 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~~~~~~d~liiAtGs~~ 120 (164)
.+.+.+++.|++++.+ ++..++ ...+.+ ++ ..+.+|.+|+|+|...
T Consensus 154 aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~--g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 154 AMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQ--GEYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECC--CEEEeCEEEECCCcch
Confidence 3456667789999887 455553 222333 33 3689999999999754
No 394
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=62.76 E-value=21 Score=28.34 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=30.4
Q ss_pred hhHHHHhhcCceEEee-EEEEee--CcEEEe--CCeeEEEEeceEEEecCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVD--KHRVKF--AGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~~~~~~d~liiAtGs~ 119 (164)
.+.+.+++.|++++.+ .+..+. ...+.+ ++ ..+.+|++|+|+|+.
T Consensus 150 ~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~--~~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 150 ALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTK--GSYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCC--CEEEeCEEEEecCcc
Confidence 3445667789999887 455553 233333 33 368999999999974
No 395
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=62.38 E-value=5.7 Score=24.88 Aligned_cols=32 Identities=28% Similarity=0.746 Sum_probs=18.4
Q ss_pred eEEEeccCCcccccccch--hhHHHHh-hcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKEN--NYEKELE-KNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~--~~~~~l~-~~gv~~~ 86 (164)
++.|..+||+.|...... .+.+.++ ..+++++
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v 39 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFV 39 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 456888999999986422 2333344 3355553
No 396
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=62.21 E-value=38 Score=27.43 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=29.1
Q ss_pred hhHHHHhhcCceEEeeE-EEEe--eCcEEE---e----CCeeEEEEeceEEEecCCCCC
Q psy7674 73 NYEKELEKNKIDYFNAK-AVFV--DKHRVK---F----AGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~-~~~~--~~~~v~---v----~~~~~~~~~d~liiAtGs~~~ 121 (164)
.+.+.+++++++++.+. ++.+ +..++. + ++....+.++.+|+|||.-..
T Consensus 146 ~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 146 ALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 45677888899998874 4443 443322 1 343446889999999998664
No 397
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=61.53 E-value=27 Score=28.17 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=31.3
Q ss_pred hHHHHhhcCceEEee-EEEEee--CcEEEe---CCeeEEEEeceEEEecCCCCCC
Q psy7674 74 YEKELEKNKIDYFNA-KAVFVD--KHRVKF---AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~~~~~~~~~d~liiAtGs~~~~ 122 (164)
+.+.+++.+++++.+ ++..++ ...+.+ ++ ..+.+|.+|.|.|....+
T Consensus 118 L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g--~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 118 LLERLHDSDIGLLANARLEQMRRSGDDWLLTLADG--RQLRAPLVVAADGANSAV 170 (405)
T ss_pred HHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCC--CEEEeCEEEEecCCCchh
Confidence 344556678998877 444542 233333 44 579999999999987654
No 398
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=61.30 E-value=9.5 Score=25.61 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=16.1
Q ss_pred ccCCcccccccch--hhHHHHhhcCceEE
Q psy7674 60 KSWCPFCTKAKEN--NYEKELEKNKIDYF 86 (164)
Q Consensus 60 ~~~cp~~~~~~~~--~~~~~l~~~gv~~~ 86 (164)
..|||+|...... ...+.+++.++.++
T Consensus 32 ~~~c~~C~~~~~~l~~~~~~~~~~~~~~i 60 (140)
T cd02971 32 KDFTPVCTTELCAFRDLAEEFAKGGAEVL 60 (140)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHCCCEEE
Confidence 6899999876311 22233445577764
No 399
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=61.21 E-value=5.7 Score=26.64 Aligned_cols=17 Identities=41% Similarity=0.901 Sum_probs=13.3
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+|||.|+...
T Consensus 21 vll~Fwa~wC~~C~~~~ 37 (131)
T cd03009 21 VGLYFSASWCPPCRAFT 37 (131)
T ss_pred EEEEEECCCChHHHHHh
Confidence 45558889999999864
No 400
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=61.13 E-value=6.5 Score=28.23 Aligned_cols=21 Identities=19% Similarity=0.042 Sum_probs=18.2
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
..++|.|||-|.+|-++|..|
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l 55 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRL 55 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHH
T ss_pred CCCEEEEEEEcCCcCeEeeee
Confidence 357899999999999999765
No 401
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=60.84 E-value=7.8 Score=23.05 Aligned_cols=45 Identities=13% Similarity=0.077 Sum_probs=30.1
Q ss_pred ccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
..++.+.++.|+.+.++.... ......+.++...+.+|....+|.
T Consensus 15 ~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~g~ 59 (76)
T cd03046 15 LWLLEELGLPYELVLYDRGPG-EQAPPEYLAINPLGKVPVLVDGDL 59 (76)
T ss_pred HHHHHHcCCCcEEEEeCCCCC-ccCCHHHHhcCCCCCCCEEEECCE
Confidence 457788999999998875421 122233445677888999876654
No 402
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=60.68 E-value=5.8 Score=26.77 Aligned_cols=17 Identities=41% Similarity=0.901 Sum_probs=13.3
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+|||.|+...
T Consensus 20 vll~F~atwC~~C~~~~ 36 (132)
T cd02964 20 VGLYFSASWCPPCRAFT 36 (132)
T ss_pred EEEEEECCCCchHHHHH
Confidence 34558899999999864
No 403
>KOG3851|consensus
Probab=60.64 E-value=3.7 Score=33.07 Aligned_cols=19 Identities=32% Similarity=0.158 Sum_probs=16.4
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
-+|+|||||..|+-+|.-+
T Consensus 40 ~kvLVvGGGsgGi~~A~k~ 58 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKF 58 (446)
T ss_pred eEEEEEcCCcchhHHHHHH
Confidence 4699999999999998754
No 404
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=60.47 E-value=38 Score=27.36 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=28.0
Q ss_pred hhcCceEEee-EEEEeeCcEEEe-CCeeEEEEeceEEEecCCCCC
Q psy7674 79 EKNKIDYFNA-KAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 79 ~~~gv~~~~~-~~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~ 121 (164)
++.+..++.+ ++..+++..+++ ++ ..+.+|.+|-|.|.++.
T Consensus 97 ~~l~~~i~~~~~V~~v~~~~v~l~dg--~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 97 QAFPEGVILGRKAVGLDADGVDLAPG--TRINARSVIDCRGFKPS 139 (370)
T ss_pred HhhcccEEecCEEEEEeCCEEEECCC--CEEEeeEEEECCCCCCC
Confidence 3334334443 666677777777 44 68999999999997653
No 405
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=60.46 E-value=11 Score=22.68 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=32.0
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
+.++|.++++.|+.+.++.... +....+.++.-.+.+|....+|.
T Consensus 16 v~~~L~~~gl~~e~~~v~~~~~--~~~~~~~~~nP~g~vP~L~~~g~ 60 (73)
T cd03043 16 PWLLLKAAGIPFEEILVPLYTP--DTRARILEFSPTGKVPVLVDGGI 60 (73)
T ss_pred HHHHHHHcCCCCEEEEeCCCCc--cccHHHHhhCCCCcCCEEEECCE
Confidence 3567889999999998876531 12245556777888999877664
No 406
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=60.43 E-value=5.9 Score=32.75 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.9
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
..++|+|+|.|.+|.-+|..+
T Consensus 201 ~GktVvViG~G~IG~~va~~a 221 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSL 221 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHH
Confidence 468999999999999888654
No 407
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=60.27 E-value=9.8 Score=22.80 Aligned_cols=45 Identities=16% Similarity=0.052 Sum_probs=30.7
Q ss_pred ccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674 3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK 48 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~ 48 (164)
.+++.+.|+.|+.+.++..+. ....+.+.++.-.+.+|....+|.
T Consensus 16 ~~~l~~~g~~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~L~~~~~ 60 (76)
T cd03050 16 YIFLKLNKIPFEECPIDLRKG-EQLTPEFKKINPFGKVPAIVDGDF 60 (76)
T ss_pred HHHHHHcCCCcEEEEecCCCC-CcCCHHHHHhCcCCCCCEEEECCE
Confidence 456888999999998876432 222234555677889998866554
No 408
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=60.22 E-value=8.8 Score=25.87 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=12.9
Q ss_pred ceEEEeccCCcc-ccccc
Q psy7674 54 SVVIFSKSWCPF-CTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~-~~~~~ 70 (164)
.++.|..+|||+ |....
T Consensus 25 ~vl~f~~~~C~~~C~~~l 42 (142)
T cd02968 25 VLVYFGYTHCPDVCPTTL 42 (142)
T ss_pred EEEEEEcCCCcccCHHHH
Confidence 455678899997 98764
No 409
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=60.18 E-value=5.8 Score=25.09 Aligned_cols=17 Identities=29% Similarity=0.766 Sum_probs=13.9
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|+.-.
T Consensus 21 vlv~f~a~~C~~C~~~~ 37 (103)
T cd03001 21 WLVEFYAPWCGHCKNLA 37 (103)
T ss_pred EEEEEECCCCHHHHHHh
Confidence 45668889999999876
No 410
>KOG2820|consensus
Probab=60.15 E-value=18 Score=29.35 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=31.2
Q ss_pred hhHHHHhhcCceEEeeEE-EEe---eC--cEEEe-CCeeEEEEeceEEEecCCC
Q psy7674 73 NYEKELEKNKIDYFNAKA-VFV---DK--HRVKF-AGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~~-~~~---~~--~~v~v-~~~~~~~~~d~liiAtGs~ 119 (164)
.++..+++.|+.|+.++. .++ +. ..+.+ +.++..+.++++|+++|+-
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 356778889999999854 333 22 12222 2222679999999999975
No 411
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=59.89 E-value=6.5 Score=24.21 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=30.2
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEee
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIH 46 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~ 46 (164)
+..+|.+.++.|+.++++.... ......+ ++...+.+|.+..+
T Consensus 22 v~~~L~~~~i~~~~~~~~~~~~-~~~~~~~-~~~p~~~vP~L~~~ 64 (84)
T cd03038 22 TRLALNHKGLEYKTVPVEFPDI-PPILGEL-TSGGFYTVPVIVDG 64 (84)
T ss_pred HHHHHHhCCCCCeEEEecCCCc-ccccccc-cCCCCceeCeEEEC
Confidence 3467889999999999875432 3333344 56778899988665
No 412
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=59.50 E-value=23 Score=22.78 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=26.5
Q ss_pred CCCccEEEEecCCCChhHHHHHHHhhcC-CCCcceEEeeceEec
Q psy7674 9 PDYNFQVVELDKLPNGAQIQTALFERTG-QKTVPNIFIHGKHID 51 (164)
Q Consensus 9 ~~~~~~~~~i~~~~~~~~~~~~l~~~~g-~~~vp~v~i~~~~ig 51 (164)
..+++++++|...++-...|+...++.. .-=-|-|.++++.++
T Consensus 36 ~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~ 79 (93)
T PF07315_consen 36 QPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVA 79 (93)
T ss_dssp S-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEE
T ss_pred CceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEe
Confidence 3567788888777665556666666543 334899999999666
No 413
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=59.38 E-value=5.1 Score=33.83 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.2
Q ss_pred CcEEEECCcHHHHHhhcc
Q psy7674 145 GKVLLVGASYIALECAGC 162 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~ 162 (164)
-.|+|||+|..|+-+|..
T Consensus 62 ~DVvVVG~G~AGl~AAi~ 79 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIE 79 (506)
T ss_pred CCEEEECcCHHHHHHHHH
Confidence 369999999999988754
No 414
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=57.87 E-value=30 Score=27.47 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=29.4
Q ss_pred hHHHHhhcCceEEee-EEEEee--CcEEEe--CCeeEEEEeceEEEecCCC
Q psy7674 74 YEKELEKNKIDYFNA-KAVFVD--KHRVKF--AGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~~~~~~d~liiAtGs~ 119 (164)
+.+.+.+.|++++.+ +++.+. ...+.+ ++ ..+.+|++|+|+|+.
T Consensus 155 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~--g~~~a~~vV~A~G~~ 203 (376)
T PRK11259 155 HLRLAREAGAELLFNEPVTAIEADGDGVTVTTAD--GTYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCC--CEEEeeEEEEecCcc
Confidence 345566789999876 455553 233333 33 368999999999975
No 415
>PLN02602 lactate dehydrogenase
Probab=57.46 E-value=6.9 Score=31.61 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=17.4
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
+.+|+|||+|.+|.-+|..|
T Consensus 37 ~~KI~IIGaG~VG~~~a~~l 56 (350)
T PLN02602 37 HTKVSVVGVGNVGMAIAQTI 56 (350)
T ss_pred CCEEEEECCCHHHHHHHHHH
Confidence 36899999999999998765
No 416
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=56.81 E-value=12 Score=27.10 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=17.3
Q ss_pred ccCCcccccccch--hhHHHHhhcCceEE
Q psy7674 60 KSWCPFCTKAKEN--NYEKELEKNKIDYF 86 (164)
Q Consensus 60 ~~~cp~~~~~~~~--~~~~~l~~~gv~~~ 86 (164)
.+|||.|...... ...+.+++.|+.++
T Consensus 41 ~~~cp~C~~el~~l~~~~~~~~~~gv~vi 69 (187)
T TIGR03137 41 ADFTFVCPTELEDLADKYAELKKLGVEVY 69 (187)
T ss_pred CCcCCcCHHHHHHHHHHHHHHHhcCCcEE
Confidence 7999999986421 22344556677764
No 417
>PRK10853 putative reductase; Provisional
Probab=56.79 E-value=6.3 Score=26.56 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=24.1
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
+.+|.-+.|.-|++++ .+|+++|+++.
T Consensus 2 i~iy~~~~C~t~rkA~-----~~L~~~~i~~~ 28 (118)
T PRK10853 2 VTLYGIKNCDTIKKAR-----RWLEAQGIDYR 28 (118)
T ss_pred EEEEcCCCCHHHHHHH-----HHHHHcCCCcE
Confidence 5789999999999999 88999999883
No 418
>KOG2415|consensus
Probab=56.71 E-value=6.4 Score=32.88 Aligned_cols=19 Identities=32% Similarity=0.195 Sum_probs=16.1
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
-.|+|||||+.|+.+|-.|
T Consensus 77 ~Dv~IVG~GPAGLsaAIrl 95 (621)
T KOG2415|consen 77 VDVVIVGAGPAGLSAAIRL 95 (621)
T ss_pred ccEEEECCCchhHHHHHHH
Confidence 3699999999999988654
No 419
>PRK10026 arsenate reductase; Provisional
Probab=56.64 E-value=8.4 Score=26.92 Aligned_cols=28 Identities=7% Similarity=0.207 Sum_probs=24.8
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
.+.+|..+.|.-|+++. .+|+++|++|.
T Consensus 3 ~i~iY~~p~Cst~RKA~-----~wL~~~gi~~~ 30 (141)
T PRK10026 3 NITIYHNPACGTSRNTL-----EMIRNSGTEPT 30 (141)
T ss_pred EEEEEeCCCCHHHHHHH-----HHHHHCCCCcE
Confidence 36789999999999999 88999999984
No 420
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=56.39 E-value=6.6 Score=32.14 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=17.8
Q ss_pred CcEEEECCcHHHHHhhcccC
Q psy7674 145 GKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l~ 164 (164)
.+|+|||.|-+|.++|..|+
T Consensus 43 ~~VlviG~GGlGs~va~~La 62 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLA 62 (392)
T ss_pred CCEEEECCCHHHHHHHHHHH
Confidence 58999999999999998763
No 421
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=56.36 E-value=6.4 Score=34.38 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=15.7
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
-.|+|||+|..|+-+|..+
T Consensus 36 ~DVlVVG~G~AGl~AAi~A 54 (640)
T PRK07573 36 FDVIVVGTGLAGASAAATL 54 (640)
T ss_pred cCEEEECccHHHHHHHHHH
Confidence 3599999999999887654
No 422
>PLN02697 lycopene epsilon cyclase
Probab=55.84 E-value=58 Score=27.94 Aligned_cols=45 Identities=13% Similarity=0.266 Sum_probs=30.7
Q ss_pred hHHHHhhcCceEEeeEEEEee--CcE--E-Ee-CCeeEEEEeceEEEecCCCC
Q psy7674 74 YEKELEKNKIDYFNAKAVFVD--KHR--V-KF-AGEERTVSAQNFIIAVGGRP 120 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~--~~~--v-~v-~~~~~~~~~d~liiAtGs~~ 120 (164)
+.+.+.+.|++++.++++.+. ... + .. ++ ..+.++.+|.|+|..+
T Consensus 198 Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG--~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 198 LLRRCVESGVSYLSSKVDRITEASDGLRLVACEDG--RVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCC--cEEECCEEEECCCcCh
Confidence 344456679999777776663 222 2 22 34 6799999999999876
No 423
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=55.33 E-value=8.6 Score=25.25 Aligned_cols=17 Identities=35% Similarity=0.987 Sum_probs=13.5
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+|||+|....
T Consensus 23 ~vl~F~~~~C~~C~~~~ 39 (123)
T cd03011 23 VLVYFWATWCPVCRFTS 39 (123)
T ss_pred EEEEEECCcChhhhhhC
Confidence 45557789999999875
No 424
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=55.23 E-value=8.9 Score=23.03 Aligned_cols=43 Identities=7% Similarity=0.068 Sum_probs=30.9
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEee
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIH 46 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~ 46 (164)
+.+++.++++.|+.++++...+ ...+.+.++.-.+.+|....+
T Consensus 15 ~~~~l~~~gi~~~~~~v~~~~~--~~~~~~~~~nP~~~vP~L~~~ 57 (75)
T cd03044 15 ILAAAKYNGLDVEIVDFQPGKE--NKTPEFLKKFPLGKVPAFEGA 57 (75)
T ss_pred HHHHHHHcCCceEEEecccccc--cCCHHHHHhCCCCCCCEEEcC
Confidence 3567888999999999987532 223345557788999998774
No 425
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.08 E-value=22 Score=29.43 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=19.7
Q ss_pred CeeEEEEeceEEEecCCCCCCCCC
Q psy7674 102 GEERTVSAQNFIIAVGGRPTYPDI 125 (164)
Q Consensus 102 ~~~~~~~~d~liiAtGs~~~~p~i 125 (164)
++.+++.+|.+|+|||=+..+|++
T Consensus 322 ~~~~t~~~D~vIlATGY~~~~P~f 345 (436)
T COG3486 322 GELETVETDAVILATGYRRAVPSF 345 (436)
T ss_pred CCceEEEeeEEEEecccccCCchh
Confidence 444678999999999999888863
No 426
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=55.01 E-value=6 Score=26.18 Aligned_cols=17 Identities=35% Similarity=0.751 Sum_probs=13.8
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|+...
T Consensus 22 vvV~f~a~wC~~C~~~~ 38 (114)
T cd02992 22 WLVEFYASWCGHCRAFA 38 (114)
T ss_pred EEEEEECCCCHHHHHHh
Confidence 35668899999999865
No 427
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=55.01 E-value=7.4 Score=26.23 Aligned_cols=28 Identities=32% Similarity=0.593 Sum_probs=24.9
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
.+.+|.-+.|.-|+.++ .+|+++||++.
T Consensus 2 ~itiy~~p~C~t~rka~-----~~L~~~gi~~~ 29 (117)
T COG1393 2 MITIYGNPNCSTCRKAL-----AWLEEHGIEYT 29 (117)
T ss_pred eEEEEeCCCChHHHHHH-----HHHHHcCCCcE
Confidence 36789999999999999 89999999983
No 428
>KOG0910|consensus
Probab=54.93 E-value=24 Score=24.99 Aligned_cols=18 Identities=28% Similarity=0.636 Sum_probs=14.5
Q ss_pred CceEEEeccCCccccccc
Q psy7674 53 NSVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 53 d~vvv~~~~~cp~~~~~~ 70 (164)
..++.|.++||..|..-.
T Consensus 63 PVlVdF~A~WCgPCk~l~ 80 (150)
T KOG0910|consen 63 PVLVDFHAEWCGPCKMLG 80 (150)
T ss_pred CEEEEEecCcCccHhHhh
Confidence 356779999999998755
No 429
>PRK13190 putative peroxiredoxin; Provisional
Probab=54.73 E-value=14 Score=27.23 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=18.6
Q ss_pred EeccCCcccccccch--hhHHHHhhcCceEE
Q psy7674 58 FSKSWCPFCTKAKEN--NYEKELEKNKIDYF 86 (164)
Q Consensus 58 ~~~~~cp~~~~~~~~--~~~~~l~~~gv~~~ 86 (164)
|-.+|||.|..+... ...+.+++.|++++
T Consensus 35 ~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi 65 (202)
T PRK13190 35 HPADFTPVCTTEFIAFSRRYEDFKKLGVELV 65 (202)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 567999999986522 22344556677664
No 430
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=54.23 E-value=43 Score=29.32 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=30.2
Q ss_pred hHHHHhhc-CceEEeeEEEEe--e-C-cE--EEe-CCeeEEEEeceEEEecCCCC
Q psy7674 74 YEKELEKN-KIDYFNAKAVFV--D-K-HR--VKF-AGEERTVSAQNFIIAVGGRP 120 (164)
Q Consensus 74 ~~~~l~~~-gv~~~~~~~~~~--~-~-~~--v~v-~~~~~~~~~d~liiAtGs~~ 120 (164)
+.+.+++. ++.++.++++.+ + . +. +.+ ++ ..+.++.+|+|||.-.
T Consensus 102 L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G--~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 102 MRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDG--LKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCC--CEEECCEEEEccCccc
Confidence 34455555 899988877654 2 2 22 333 44 5799999999999764
No 431
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=54.04 E-value=7.7 Score=31.56 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=17.3
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
.+|+|||.|-+|.++|..|
T Consensus 42 ~~VliiG~GglG~~v~~~L 60 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSL 60 (370)
T ss_pred CcEEEECCCHHHHHHHHHH
Confidence 5899999999999999876
No 432
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=53.90 E-value=44 Score=26.69 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=30.0
Q ss_pred hHHHHhhcC-ceEEeeEEEEee--CcEEEe---CCeeEEEEeceEEEecCCCCCC
Q psy7674 74 YEKELEKNK-IDYFNAKAVFVD--KHRVKF---AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 74 ~~~~l~~~g-v~~~~~~~~~~~--~~~v~v---~~~~~~~~~d~liiAtGs~~~~ 122 (164)
+.+.+++.+ ++++..+++.+. ...+.+ ++ ..+.+|.+|.|+|....+
T Consensus 117 L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~a~~vI~adG~~S~v 169 (388)
T PRK07608 117 LWAALRFQPNLTWFPARAQGLEVDPDAATLTLADG--QVLRADLVVGADGAHSWV 169 (388)
T ss_pred HHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCC--CEEEeeEEEEeCCCCchH
Confidence 444556666 888843555542 333333 33 578999999999987654
No 433
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=53.87 E-value=14 Score=27.19 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=19.7
Q ss_pred EeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674 58 FSKSWCPFCTKAKE--NNYEKELEKNKIDYF 86 (164)
Q Consensus 58 ~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~ 86 (164)
|-.+|||.|..... ..+.+.+++.|++++
T Consensus 33 ~pa~~cp~C~~el~~l~~~~~~f~~~gv~vi 63 (203)
T cd03016 33 HPADFTPVCTTELGAFAKLAPEFKKRNVKLI 63 (203)
T ss_pred ecCCCCCcCHHHHHHHHHHHHHHHHcCCEEE
Confidence 55799999998742 233455667777764
No 434
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=53.72 E-value=14 Score=26.13 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=19.0
Q ss_pred ceEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674 54 SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~ 86 (164)
.++.|-.+|||.|..... ..+.+.+.+.++.++
T Consensus 28 ~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v 62 (171)
T cd02969 28 LVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVV 62 (171)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEE
Confidence 344567899999986431 123334444566653
No 435
>KOG0868|consensus
Probab=53.65 E-value=9.7 Score=27.93 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=40.3
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID 51 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig 51 (164)
|.+.|.=++++|++.-++....+.+.-..+.++.-+.+||...|+|..+.
T Consensus 20 VRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~ 69 (217)
T KOG0868|consen 20 VRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLT 69 (217)
T ss_pred HHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEee
Confidence 34556667889999999888777667678888888999999999997444
No 436
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=53.31 E-value=9.1 Score=29.96 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=12.6
Q ss_pred CCCCcEEEECCcHHHH
Q psy7674 142 KDPGKVLLVGASYIAL 157 (164)
Q Consensus 142 ~~~~~vvViGgG~~g~ 157 (164)
..|++|+|||||..|.
T Consensus 75 ~~pk~VLiiGgGdG~t 90 (282)
T COG0421 75 PNPKRVLIIGGGDGGT 90 (282)
T ss_pred CCCCeEEEECCCccHH
Confidence 3458999999987664
No 437
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=52.86 E-value=7.7 Score=27.16 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=12.5
Q ss_pred eEEEeccCCccccccc
Q psy7674 55 VVIFSKSWCPFCTKAK 70 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~ 70 (164)
++-|.++||+.|..-.
T Consensus 27 VvdF~A~WCgpCk~m~ 42 (142)
T PLN00410 27 VIRFGHDWDETCMQMD 42 (142)
T ss_pred EEEEECCCChhHHHHH
Confidence 3449999999998654
No 438
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=52.56 E-value=52 Score=26.98 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=29.8
Q ss_pred hhHHHHhhcCceEEee-EEEEe--e--CcEEE---eCCeeEEEEeceEEEecCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFV--D--KHRVK---FAGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~--~--~~~v~---v~~~~~~~~~d~liiAtGs~ 119 (164)
.+.+.+++.|++++.+ .++.+ + ...+. ..+....+.++.+|+|||.-
T Consensus 128 ~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 128 ALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 3455677889999887 44443 2 22222 22222478899999999953
No 439
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=52.48 E-value=8.9 Score=26.19 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=24.7
Q ss_pred ceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
.+.+|..+.|.-|++++ .+|+++|+++.
T Consensus 2 ~i~iY~~p~Cst~RKA~-----~~L~~~gi~~~ 29 (126)
T TIGR01616 2 TIIFYEKPGCANNARQK-----AALKASGHDVE 29 (126)
T ss_pred eEEEEeCCCCHHHHHHH-----HHHHHCCCCcE
Confidence 36789999999999999 89999999983
No 440
>KOG3029|consensus
Probab=52.44 E-value=13 Score=29.20 Aligned_cols=28 Identities=32% Similarity=0.729 Sum_probs=23.5
Q ss_pred CceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674 53 NSVVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85 (164)
Q Consensus 53 d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~ 85 (164)
-++++|.-..||||-+.+ .+|.-.|+.+
T Consensus 89 L~l~LyQyetCPFCcKVr-----AFLDyhgisY 116 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVR-----AFLDYHGISY 116 (370)
T ss_pred ceEEEEeeccCchHHHHH-----HHHhhcCCce
Confidence 367889999999999887 7777778887
No 441
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=52.10 E-value=13 Score=23.10 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=16.9
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
..++++|+|.|.+|.-+|..|
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l 42 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLL 42 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHH
Confidence 357899999999998776654
No 442
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=52.06 E-value=10 Score=23.47 Aligned_cols=12 Identities=33% Similarity=1.018 Sum_probs=10.4
Q ss_pred eccCCccccccc
Q psy7674 59 SKSWCPFCTKAK 70 (164)
Q Consensus 59 ~~~~cp~~~~~~ 70 (164)
..+|||+|....
T Consensus 40 ~~~~C~~C~~~~ 51 (127)
T COG0526 40 WAPWCPPCRAEA 51 (127)
T ss_pred EcCcCHHHHhhc
Confidence 489999999885
No 443
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=51.75 E-value=10 Score=29.97 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=17.5
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
..++|+|||+|.+|..+|..|
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L 197 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHL 197 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHH
Confidence 357899999999999887654
No 444
>PLN02785 Protein HOTHEAD
Probab=51.74 E-value=8.9 Score=33.18 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=17.2
Q ss_pred CcEEEECCcHHHHHhhcccC
Q psy7674 145 GKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l~ 164 (164)
-.++|||||..|+-+|..|+
T Consensus 56 yD~IIVG~G~aG~~lA~~Ls 75 (587)
T PLN02785 56 YDYIVVGGGTAGCPLAATLS 75 (587)
T ss_pred CCEEEECcCHHHHHHHHHHh
Confidence 36999999999999998764
No 445
>PRK07411 hypothetical protein; Validated
Probab=51.70 E-value=8.6 Score=31.48 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=17.7
Q ss_pred CcEEEECCcHHHHHhhcccC
Q psy7674 145 GKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l~ 164 (164)
.+|+|||.|-+|.++|..|+
T Consensus 39 ~~VlivG~GGlG~~va~~La 58 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLA 58 (390)
T ss_pred CcEEEECCCHHHHHHHHHHH
Confidence 58999999999999998763
No 446
>PRK09126 hypothetical protein; Provisional
Probab=51.55 E-value=50 Score=26.43 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=29.3
Q ss_pred hhcCceEEee-EEEEee--CcE--EEe-CCeeEEEEeceEEEecCCCCCCCC
Q psy7674 79 EKNKIDYFNA-KAVFVD--KHR--VKF-AGEERTVSAQNFIIAVGGRPTYPD 124 (164)
Q Consensus 79 ~~~gv~~~~~-~~~~~~--~~~--v~v-~~~~~~~~~d~liiAtGs~~~~p~ 124 (164)
+..|++++.+ +++.++ ... +.+ ++ ..+.+|.+|.|.|..+.+..
T Consensus 122 ~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g--~~~~a~~vI~AdG~~S~vr~ 171 (392)
T PRK09126 122 QQDGIELLTGTRVTAVRTDDDGAQVTLANG--RRLTARLLVAADSRFSATRR 171 (392)
T ss_pred hCCCcEEEcCCeEEEEEEcCCeEEEEEcCC--CEEEeCEEEEeCCCCchhhH
Confidence 3468999888 444542 223 333 44 57999999999998766543
No 447
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=51.49 E-value=76 Score=24.45 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=31.3
Q ss_pred hhHHHHhhcCceEEeeEE-EEe--eCcEEE--e----CCeeEEEEeceEEEecCCCCCC
Q psy7674 73 NYEKELEKNKIDYFNAKA-VFV--DKHRVK--F----AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~~-~~~--~~~~v~--v----~~~~~~~~~d~liiAtGs~~~~ 122 (164)
.+.+.+++.++++..+.. +.+ +...++ + ++...++.+|.||-|.|.+..+
T Consensus 116 ~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~v 174 (356)
T PF01494_consen 116 ALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKV 174 (356)
T ss_dssp HHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HH
T ss_pred hhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccch
Confidence 355666778899988743 333 333332 2 3433478999999999988754
No 448
>KOG2893|consensus
Probab=51.28 E-value=5.4 Score=30.45 Aligned_cols=12 Identities=33% Similarity=1.146 Sum_probs=10.1
Q ss_pred eccCCccccccc
Q psy7674 59 SKSWCPFCTKAK 70 (164)
Q Consensus 59 ~~~~cp~~~~~~ 70 (164)
.|.||.||.++-
T Consensus 9 ~kpwcwycnref 20 (341)
T KOG2893|consen 9 DKPWCWYCNREF 20 (341)
T ss_pred CCceeeeccccc
Confidence 479999999864
No 449
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=51.09 E-value=11 Score=31.14 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=18.2
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
..++|+|+|.|.+|.-+|..+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~a 214 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRA 214 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHH
Confidence 468999999999999988754
No 450
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=51.00 E-value=9.1 Score=29.92 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=17.8
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.++++|+|.|.+|..+|..|
T Consensus 151 gk~v~IiG~G~iG~avA~~L 170 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTF 170 (287)
T ss_pred CCEEEEEcChHHHHHHHHHH
Confidence 57899999999999998765
No 451
>PRK14982 acyl-ACP reductase; Provisional
Probab=50.93 E-value=9.1 Score=30.83 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=17.4
Q ss_pred CCcEEEECC-cHHHHHhhccc
Q psy7674 144 PGKVLLVGA-SYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGg-G~~g~E~A~~l 163 (164)
.++++|+|+ |.+|-++|..|
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L 175 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWL 175 (340)
T ss_pred CCEEEEEccChHHHHHHHHHH
Confidence 478999998 89999998765
No 452
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=50.90 E-value=55 Score=26.94 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=31.1
Q ss_pred hHHHHhhcCceEEee-EEEEee--CcEE-Ee--CCeeEEEEeceEEEecCCCCC
Q psy7674 74 YEKELEKNKIDYFNA-KAVFVD--KHRV-KF--AGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~~--~~~v-~v--~~~~~~~~~d~liiAtGs~~~ 121 (164)
+.+.+++.|++++.+ .+..+. ...+ .+ ++ ..+.+|.+|.|+|....
T Consensus 114 L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g--~~i~A~~VI~A~G~~s~ 165 (428)
T PRK10157 114 LMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADG--DVIEAKTVILADGVNSI 165 (428)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCC--cEEECCEEEEEeCCCHH
Confidence 455566789999987 454442 2232 23 34 57899999999998654
No 453
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=50.65 E-value=12 Score=26.85 Aligned_cols=21 Identities=29% Similarity=0.229 Sum_probs=16.6
Q ss_pred CCCcEEEECCcH-HHHHhhccc
Q psy7674 143 DPGKVLLVGASY-IALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~-~g~E~A~~l 163 (164)
..++++|||+|- +|.-+|..|
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L 64 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALL 64 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHH
Confidence 358999999997 488777665
No 454
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=50.32 E-value=37 Score=27.23 Aligned_cols=44 Identities=9% Similarity=0.140 Sum_probs=27.8
Q ss_pred hHHHHhhcCceEEee-EEEEee--CcEEEe--CCeeEEEEeceEEEecCCC
Q psy7674 74 YEKELEKNKIDYFNA-KAVFVD--KHRVKF--AGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~~~~~~d~liiAtGs~ 119 (164)
+.+.+++ |++++.+ .+..++ ...+.+ ++ +..+.+|++|+|+|..
T Consensus 141 l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~-g~~~~a~~vV~a~G~~ 189 (381)
T TIGR03197 141 LLAHAGI-RLTLHFNTEITSLERDGEGWQLLDAN-GEVIAASVVVLANGAQ 189 (381)
T ss_pred HHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCC-CCEEEcCEEEEcCCcc
Confidence 4455566 8998876 455553 223333 22 1458999999999964
No 455
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=50.30 E-value=9.5 Score=33.34 Aligned_cols=19 Identities=26% Similarity=0.099 Sum_probs=15.5
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
-.|+|||+|..|+-+|..+
T Consensus 51 ~DVlVIG~G~AGl~AAl~A 69 (635)
T PLN00128 51 YDAVVVGAGGAGLRAAIGL 69 (635)
T ss_pred cCEEEECccHHHHHHHHHH
Confidence 3699999999999887543
No 456
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=50.04 E-value=19 Score=29.30 Aligned_cols=29 Identities=28% Similarity=0.204 Sum_probs=20.5
Q ss_pred hhhccCcCCCCcEEEECC-cHHHHHhhccc
Q psy7674 135 DDLFSLNKDPGKVLLVGA-SYIALECAGCD 163 (164)
Q Consensus 135 ~~~~~~~~~~~~vvViGg-G~~g~E~A~~l 163 (164)
.+........++++|+|| |++|..++..|
T Consensus 51 ~~~~~~~~~~~kVLVtGatG~IG~~l~~~L 80 (390)
T PLN02657 51 QSFRSKEPKDVTVLVVGATGYIGKFVVREL 80 (390)
T ss_pred ccccccCCCCCEEEEECCCcHHHHHHHHHH
Confidence 333333444578999987 99999988765
No 457
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=49.79 E-value=12 Score=24.73 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=13.7
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|+...
T Consensus 25 vvV~f~a~~c~~C~~~~ 41 (113)
T cd02989 25 VVCHFYHPEFFRCKIMD 41 (113)
T ss_pred EEEEEECCCCccHHHHH
Confidence 45668999999999765
No 458
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=49.77 E-value=8.7 Score=35.50 Aligned_cols=20 Identities=25% Similarity=0.183 Sum_probs=17.5
Q ss_pred CcEEEECCcHHHHHhhcccC
Q psy7674 145 GKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l~ 164 (164)
.+|+|||.|.+|+|++..|+
T Consensus 420 ~kVlvvGaGGlG~e~lknLa 439 (1008)
T TIGR01408 420 LNIFLVGCGAIGCEMLKNFA 439 (1008)
T ss_pred CcEEEECCChHHHHHHHHHH
Confidence 58999999999999987763
No 459
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=49.73 E-value=58 Score=26.33 Aligned_cols=47 Identities=9% Similarity=0.150 Sum_probs=31.1
Q ss_pred hhHHHHhhcCceEEee-EEEEee--CcEEE--e-CCe---eEEEEeceEEEecCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFVD--KHRVK--F-AGE---ERTVSAQNFIIAVGGR 119 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~v~--v-~~~---~~~~~~d~liiAtGs~ 119 (164)
.+.+.+++.|++++.+ +++.++ ...+. + ++. ...+.+|++|+|+|..
T Consensus 202 ~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 202 GLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence 4556678889999887 565553 22232 2 221 1368999999999975
No 460
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=49.68 E-value=21 Score=21.60 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=29.4
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCC-CCcceEEee-ce
Q psy7674 2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQ-KTVPNIFIH-GK 48 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~-~~vp~v~i~-~~ 48 (164)
+..++++.+++|+.+.++........ +.+.+..-. +.+|.+-.+ +.
T Consensus 15 ~r~~l~~~gv~~e~~~v~~~~~~~~~-~e~~~~~p~~g~vP~l~~~~~~ 62 (76)
T PF02798_consen 15 IRLLLAEKGVEYEDVRVDFEKGEHKS-PEFLAINPMFGKVPALEDGDGF 62 (76)
T ss_dssp HHHHHHHTT--EEEEEEETTTTGGGS-HHHHHHTTTSSSSSEEEETTTE
T ss_pred HHHHHHHhcccCceEEEecccccccc-hhhhhcccccceeeEEEECCCC
Confidence 35678899999999999865332222 444445455 789998888 54
No 461
>PRK10996 thioredoxin 2; Provisional
Probab=49.49 E-value=8.5 Score=26.47 Aligned_cols=17 Identities=29% Similarity=0.688 Sum_probs=13.8
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||++|+...
T Consensus 55 vvv~F~a~wC~~C~~~~ 71 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFA 71 (139)
T ss_pred EEEEEECCCCHHHHHHH
Confidence 35669999999999765
No 462
>PLN02976 amine oxidase
Probab=49.46 E-value=10 Score=36.57 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=17.6
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
..+|+|||+|..|+.+|..|
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L 712 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHL 712 (1713)
T ss_pred CCcEEEECchHHHHHHHHHH
Confidence 47899999999999999765
No 463
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=49.40 E-value=57 Score=26.10 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=29.7
Q ss_pred HHHHhhc-CceEEee-EEEEee--CcEEEe---CCeeEEEEeceEEEecCCCCCC
Q psy7674 75 EKELEKN-KIDYFNA-KAVFVD--KHRVKF---AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 75 ~~~l~~~-gv~~~~~-~~~~~~--~~~v~v---~~~~~~~~~d~liiAtGs~~~~ 122 (164)
.+.+.+. |++++.+ +++.+. ...+.+ ++ ..+.+|.+|.|.|....+
T Consensus 119 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 119 WQALEAHPNVTLRCPASLQALQRDDDGWELTLADG--EEIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCC--CEEEeCEEEEeCCCCchh
Confidence 3444555 8998866 444442 233333 34 579999999999987754
No 464
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=49.25 E-value=9.8 Score=26.85 Aligned_cols=16 Identities=31% Similarity=0.748 Sum_probs=13.6
Q ss_pred eEEEeccCCccccccc
Q psy7674 55 VVIFSKSWCPFCTKAK 70 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~ 70 (164)
++.|..+|||.|+...
T Consensus 51 vV~Fya~wC~~Ck~l~ 66 (152)
T cd02962 51 LVEFFTTWSPECVNFA 66 (152)
T ss_pred EEEEECCCCHHHHHHH
Confidence 5669999999999765
No 465
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=48.92 E-value=13 Score=24.41 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=13.4
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|..-.
T Consensus 27 vvv~F~a~~c~~C~~l~ 43 (113)
T cd02957 27 VVVHFYEPGFPRCKILD 43 (113)
T ss_pred EEEEEeCCCCCcHHHHH
Confidence 35568999999999754
No 466
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=48.91 E-value=64 Score=25.99 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=31.2
Q ss_pred hHHHHhhcCceEEeeEEEEee--CcE--EEe-C------CeeEEEEeceEEEecCCCCCC
Q psy7674 74 YEKELEKNKIDYFNAKAVFVD--KHR--VKF-A------GEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~~~~~~~--~~~--v~v-~------~~~~~~~~d~liiAtGs~~~~ 122 (164)
+.+.+.+.|++++.++++.+. ... +++ + +....+.+|.+|.|+|.+..+
T Consensus 98 L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 98 LRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 445556679999877665542 222 322 2 112468999999999976543
No 467
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=48.83 E-value=13 Score=30.21 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=17.4
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
.+.+++|+|+|.+|..+|..+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a 186 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMA 186 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHH
Confidence 357799999999999888654
No 468
>PRK10015 oxidoreductase; Provisional
Probab=48.42 E-value=61 Score=26.74 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=30.7
Q ss_pred hHHHHhhcCceEEee-EEEEee--CcEEE-e-CCeeEEEEeceEEEecCCCCC
Q psy7674 74 YEKELEKNKIDYFNA-KAVFVD--KHRVK-F-AGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~~--~~~v~-v-~~~~~~~~~d~liiAtGs~~~ 121 (164)
+.+.+++.|++++.+ ++..+. ...+. + .+ ...+.+|.+|.|+|....
T Consensus 114 L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~-~~~i~A~~VI~AdG~~s~ 165 (429)
T PRK10015 114 LMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAG-DDILEANVVILADGVNSM 165 (429)
T ss_pred HHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeC-CeEEECCEEEEccCcchh
Confidence 445567789999887 454442 22332 2 22 157999999999997654
No 469
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=48.18 E-value=76 Score=27.84 Aligned_cols=44 Identities=16% Similarity=0.318 Sum_probs=27.5
Q ss_pred HHHhhcCceEEeeE-EEEe--eCcEE---Ee----CCeeEEEEeceEEEecCCC
Q psy7674 76 KELEKNKIDYFNAK-AVFV--DKHRV---KF----AGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 76 ~~l~~~gv~~~~~~-~~~~--~~~~v---~v----~~~~~~~~~d~liiAtGs~ 119 (164)
+.+++.||+++.++ ++.+ +...+ .+ ++....+.++.+|+|||.-
T Consensus 178 ~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~ 231 (640)
T PRK07573 178 RQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGY 231 (640)
T ss_pred HHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence 34567799998874 4443 33322 12 2322368899999999983
No 470
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=48.04 E-value=11 Score=30.67 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=17.7
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
..+|+|+|.|-+|.++|..|
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~L 154 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYL 154 (376)
T ss_pred cCcEEEECCCHHHHHHHHHH
Confidence 36899999999999999876
No 471
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=47.95 E-value=11 Score=31.75 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.3
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
.+++++|+|.|.+|..+|..|
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL 273 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQAL 273 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHH
Confidence 468999999999999998765
No 472
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=47.82 E-value=41 Score=20.33 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=22.8
Q ss_pred CceEEEeccCCc--ccccccchhhHHHHhhcCceEEeeE
Q psy7674 53 NSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNAK 89 (164)
Q Consensus 53 d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~~ 89 (164)
-.++++.+..-+ ...+.....+.+.+++.||+++.+.
T Consensus 23 ~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~ 61 (80)
T PF00070_consen 23 KEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNT 61 (80)
T ss_dssp SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESE
T ss_pred cEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 345555543322 3333334456788999999999874
No 473
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=47.79 E-value=25 Score=30.82 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.8
Q ss_pred CCcEEEECC-cHHHHHhhccc
Q psy7674 144 PGKVLLVGA-SYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGg-G~~g~E~A~~l 163 (164)
.++|+|.|| |++|-.++..|
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~L 335 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERL 335 (660)
T ss_pred CCEEEEECCCchHHHHHHHHH
Confidence 368999996 99999998765
No 474
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=47.60 E-value=9.8 Score=33.74 Aligned_cols=19 Identities=16% Similarity=0.087 Sum_probs=16.8
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
++|.|||+|.+|..+|..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~ 332 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQS 332 (715)
T ss_pred ceEEEECCchhHHHHHHHH
Confidence 6899999999999998764
No 475
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=47.45 E-value=73 Score=26.37 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=28.9
Q ss_pred hHHHHhhcCceEEee-EEEEee--CcEEE---e---CCeeEEEEeceEEEecCCC
Q psy7674 74 YEKELEKNKIDYFNA-KAVFVD--KHRVK---F---AGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~~--~~~v~---v---~~~~~~~~~d~liiAtGs~ 119 (164)
+.+.+++.|++++.+ .++.+. ...+. + ++....+.++.+|+|||.-
T Consensus 137 l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 137 LYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 455667789999877 444432 22222 2 2223467889999999963
No 476
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=47.38 E-value=13 Score=24.84 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=16.6
Q ss_pred ecCCceEEEeccC--Cccccccc
Q psy7674 50 IDNNSVVIFSKSW--CPFCTKAK 70 (164)
Q Consensus 50 ig~d~vvv~~~~~--cp~~~~~~ 70 (164)
.++..++.|..+| ||.|+.-.
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~ 48 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVA 48 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhH
Confidence 3466778899997 99999765
No 477
>PRK08244 hypothetical protein; Provisional
Probab=47.37 E-value=68 Score=26.80 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=31.4
Q ss_pred hHHHHhhcCceEEee-EEEEe--eCcEE--Ee-C-CeeEEEEeceEEEecCCCCCC
Q psy7674 74 YEKELEKNKIDYFNA-KAVFV--DKHRV--KF-A-GEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 74 ~~~~l~~~gv~~~~~-~~~~~--~~~~v--~v-~-~~~~~~~~d~liiAtGs~~~~ 122 (164)
+.+.+++.|++++.+ +++.+ +...+ ++ + +....+.+|++|.|.|.++.+
T Consensus 106 L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 106 LEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred HHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 445566779999887 44444 23333 33 2 212478999999999988743
No 478
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=47.36 E-value=21 Score=26.00 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=19.2
Q ss_pred CCceEEEeccCCcccccccchhhHHH---HhhcCceEE
Q psy7674 52 NNSVVIFSKSWCPFCTKAKENNYEKE---LEKNKIDYF 86 (164)
Q Consensus 52 ~d~vvv~~~~~cp~~~~~~~~~~~~~---l~~~gv~~~ 86 (164)
.-.++++.++||++|.. ...+.++ ++..|+.++
T Consensus 26 KvvLVvf~AS~C~~~~q--~~~L~~L~~~y~~~gl~Vl 61 (183)
T PRK10606 26 NVLLIVNVASKCGLTPQ--YEQLENIQKAWADQGFVVL 61 (183)
T ss_pred CEEEEEEEeCCCCCcHH--HHHHHHHHHHHhhCCeEEE
Confidence 33566688899999852 3333333 344466553
No 479
>PRK08605 D-lactate dehydrogenase; Validated
Probab=47.27 E-value=14 Score=29.52 Aligned_cols=20 Identities=30% Similarity=0.255 Sum_probs=17.6
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.++|.|||.|.+|-.+|..|
T Consensus 146 g~~VgIIG~G~IG~~vA~~L 165 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIF 165 (332)
T ss_pred CCEEEEECCCHHHHHHHHHH
Confidence 47899999999999998765
No 480
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=47.13 E-value=13 Score=30.88 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=18.0
Q ss_pred CCCcEEEECCcHHHHHhhccc
Q psy7674 143 DPGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~A~~l 163 (164)
..++++|+|.|.+|.-+|..|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~l 231 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRL 231 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHH
Confidence 468999999999999988754
No 481
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=47.09 E-value=15 Score=29.29 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=11.8
Q ss_pred CCCcEEEECCcHHHHHh
Q psy7674 143 DPGKVLLVGASYIALEC 159 (164)
Q Consensus 143 ~~~~vvViGgG~~g~E~ 159 (164)
...+|+.||||. |.|+
T Consensus 86 ~~~~VlCIGGGA-GAEl 101 (315)
T PF11312_consen 86 KSLRVLCIGGGA-GAEL 101 (315)
T ss_pred cCceEEEECCCh-HHHH
Confidence 347899999998 3444
No 482
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=46.87 E-value=81 Score=25.83 Aligned_cols=49 Identities=22% Similarity=0.170 Sum_probs=30.3
Q ss_pred hhHHHHhhcCceEEee-EEEEe--eC-cE---EEe---CCeeEEEEeceEEEecCCCCC
Q psy7674 73 NYEKELEKNKIDYFNA-KAVFV--DK-HR---VKF---AGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~-~~~~~--~~-~~---v~v---~~~~~~~~~d~liiAtGs~~~ 121 (164)
.+.+.+++.|++++.+ .++.+ +. .. +.+ ++....+.++.+|+|||+-..
T Consensus 135 ~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 135 KLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 3556677889999887 45444 22 22 223 222224778999999997543
No 483
>KOG2501|consensus
Probab=46.55 E-value=7.6 Score=27.67 Aligned_cols=26 Identities=35% Similarity=0.813 Sum_probs=16.7
Q ss_pred EeccCCccccccc--chhhHHHHhhcCc
Q psy7674 58 FSKSWCPFCTKAK--ENNYEKELEKNKI 83 (164)
Q Consensus 58 ~~~~~cp~~~~~~--~~~~~~~l~~~gv 83 (164)
||+.|||.|+.-. -..+-+++++.+-
T Consensus 40 FsA~wC~pCR~FTP~Lk~fYe~l~~~~~ 67 (157)
T KOG2501|consen 40 FSAHWCPPCRDFTPILKDFYEELKDNAA 67 (157)
T ss_pred EEEEECCchhhCCchHHHHHHHHHhcCC
Confidence 9999999998743 2233444555444
No 484
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=46.46 E-value=11 Score=33.56 Aligned_cols=19 Identities=16% Similarity=0.087 Sum_probs=16.8
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
++|.|||+|.+|..+|..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~ 332 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQS 332 (714)
T ss_pred ceEEEECCchHHHHHHHHH
Confidence 5899999999999998765
No 485
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=46.17 E-value=15 Score=31.30 Aligned_cols=20 Identities=40% Similarity=0.659 Sum_probs=16.7
Q ss_pred CCCCcEEEECCcHHHHHhhc
Q psy7674 142 KDPGKVLLVGASYIALECAG 161 (164)
Q Consensus 142 ~~~~~vvViGgG~~g~E~A~ 161 (164)
..+.+|+|+|+|.+|+-++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~ 182 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIG 182 (509)
T ss_pred cCCCEEEEECCcHHHHHHHH
Confidence 35789999999999987754
No 486
>PF13728 TraF: F plasmid transfer operon protein
Probab=46.10 E-value=21 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.469 Sum_probs=21.6
Q ss_pred eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86 (164)
Q Consensus 55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~ 86 (164)
++.|-++.||||..-. --+..+.+++|++++
T Consensus 124 L~~F~~~~C~~C~~~~-pil~~~~~~yg~~v~ 154 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQA-PILQQFADKYGFSVI 154 (215)
T ss_pred EEEEEcCCCchhHHHH-HHHHHHHHHhCCEEE
Confidence 6778889999998654 123345566788874
No 487
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=46.06 E-value=11 Score=33.35 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=16.5
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
++|.|||+|.+|..+|..+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~ 323 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVT 323 (699)
T ss_pred cEEEEECCcHHHHHHHHHH
Confidence 5799999999999998654
No 488
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=45.97 E-value=73 Score=27.97 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=29.1
Q ss_pred hHHHHhhc-CceEEeeEEEEe--eCcEE---Ee-CCeeEEEEeceEEEecCCC
Q psy7674 74 YEKELEKN-KIDYFNAKAVFV--DKHRV---KF-AGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 74 ~~~~l~~~-gv~~~~~~~~~~--~~~~v---~v-~~~~~~~~~d~liiAtGs~ 119 (164)
+.+.+.+. |++++.+++..+ +...+ .+ ++ ..+.++.+|+|||+-
T Consensus 106 L~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG--~~I~Ak~VIlATGTF 156 (618)
T PRK05192 106 MREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDG--LEFRAKAVVLTTGTF 156 (618)
T ss_pred HHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCC--CEEECCEEEEeeCcc
Confidence 33445544 899988877654 33332 22 44 679999999999963
No 489
>KOG1238|consensus
Probab=45.89 E-value=12 Score=32.53 Aligned_cols=20 Identities=15% Similarity=0.012 Sum_probs=17.2
Q ss_pred CcEEEECCcHHHHHhhcccC
Q psy7674 145 GKVLLVGASYIALECAGCDK 164 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l~ 164 (164)
=..+|||||..|+-+|..|+
T Consensus 58 yDyIVVGgGtAGcvlAarLS 77 (623)
T KOG1238|consen 58 YDYIVVGGGTAGCVLAARLS 77 (623)
T ss_pred CCEEEECCCchhHHHHHhhc
Confidence 36889999999999998774
No 490
>KOG2012|consensus
Probab=45.77 E-value=12 Score=33.69 Aligned_cols=19 Identities=42% Similarity=0.329 Sum_probs=16.3
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
.++-+||+|+||+|+-..+
T Consensus 431 ~~~FlVGaGAIGCE~LKN~ 449 (1013)
T KOG2012|consen 431 QKVFLVGAGAIGCELLKNF 449 (1013)
T ss_pred CcEEEEccchhhHHHHHhh
Confidence 5889999999999986654
No 491
>KOG2665|consensus
Probab=45.72 E-value=8.3 Score=31.08 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.4
Q ss_pred CcEEEECCcHHHHHhhccc
Q psy7674 145 GKVLLVGASYIALECAGCD 163 (164)
Q Consensus 145 ~~vvViGgG~~g~E~A~~l 163 (164)
-.+||||||.+|+..|..|
T Consensus 49 ~D~VvvGgGiVGlAsARel 67 (453)
T KOG2665|consen 49 YDLVVVGGGIVGLASAREL 67 (453)
T ss_pred ccEEEECCceeehhhhHHH
Confidence 3689999999999988765
No 492
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=45.56 E-value=68 Score=25.38 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=30.3
Q ss_pred hHHHHhhcC-ceEEee-EEEEee--CcEEEe---CCeeEEEEeceEEEecCCCCC
Q psy7674 74 YEKELEKNK-IDYFNA-KAVFVD--KHRVKF---AGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 74 ~~~~l~~~g-v~~~~~-~~~~~~--~~~v~v---~~~~~~~~~d~liiAtGs~~~ 121 (164)
+.+.+.+.+ ++++.+ +++.++ ...+.+ ++ ..+.+|.+|.|.|....
T Consensus 112 L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g--~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 112 LWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDG--QQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCC--CEEEeeEEEEeCCCCCH
Confidence 444555666 888877 455553 333333 44 56899999999998764
No 493
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=45.52 E-value=62 Score=25.75 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=30.1
Q ss_pred hHHHHhh-cCceEEee-EEEEee--CcEEEe---CCeeEEEEeceEEEecCCCCC
Q psy7674 74 YEKELEK-NKIDYFNA-KAVFVD--KHRVKF---AGEERTVSAQNFIIAVGGRPT 121 (164)
Q Consensus 74 ~~~~l~~-~gv~~~~~-~~~~~~--~~~v~v---~~~~~~~~~d~liiAtGs~~~ 121 (164)
+.+.+.+ .|++++.+ +++.+. ...+++ ++ ..+.+|.+|.|.|....
T Consensus 111 L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 111 LLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNG--QQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCC--CEEEeeEEEEecCCChH
Confidence 3444555 48999866 555552 333333 34 57899999999998754
No 494
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=45.50 E-value=13 Score=29.69 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=17.4
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
.+++.|||.|.+|..+|..|
T Consensus 146 g~~VgIIG~G~IG~~vA~~L 165 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIY 165 (330)
T ss_pred CCEEEEECCCHHHHHHHHHH
Confidence 46899999999999998765
No 495
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=45.35 E-value=24 Score=24.30 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=17.7
Q ss_pred EEEec-cCCcccccccc--hhhHHHHhhcCceEE
Q psy7674 56 VIFSK-SWCPFCTKAKE--NNYEKELEKNKIDYF 86 (164)
Q Consensus 56 vv~~~-~~cp~~~~~~~--~~~~~~l~~~gv~~~ 86 (164)
+.|-. .|||+|..... ....+.+++.|+.++
T Consensus 35 l~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi 68 (154)
T PRK09437 35 VYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVL 68 (154)
T ss_pred EEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEE
Confidence 33444 46889987532 223345566677764
No 496
>PLN02494 adenosylhomocysteinase
Probab=45.13 E-value=16 Score=30.92 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=17.8
Q ss_pred CCcEEEECCcHHHHHhhccc
Q psy7674 144 PGKVLLVGASYIALECAGCD 163 (164)
Q Consensus 144 ~~~vvViGgG~~g~E~A~~l 163 (164)
+++++|+|.|.+|..+|..+
T Consensus 254 GKtVvViGyG~IGr~vA~~a 273 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAM 273 (477)
T ss_pred CCEEEEECCCHHHHHHHHHH
Confidence 68999999999999998754
No 497
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=44.92 E-value=75 Score=26.96 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=31.3
Q ss_pred hHHHHhhc-CceEEee-EEEEee--CcEEEe-----CCeeEEEEeceEEEecCCCCCC
Q psy7674 74 YEKELEKN-KIDYFNA-KAVFVD--KHRVKF-----AGEERTVSAQNFIIAVGGRPTY 122 (164)
Q Consensus 74 ~~~~l~~~-gv~~~~~-~~~~~~--~~~v~v-----~~~~~~~~~d~liiAtGs~~~~ 122 (164)
+.+.+.+. |++++.+ +++.+. ...+++ +++...+.+|+||-|.|++..+
T Consensus 119 L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 119 LRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred HHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhH
Confidence 33444443 8999877 555553 333333 2323579999999999998754
No 498
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=44.84 E-value=80 Score=26.67 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=29.8
Q ss_pred hhHHHHhhcCceEEeeE-EEEee--CcE---EEe---CCeeEEEEeceEEEecCCC
Q psy7674 73 NYEKELEKNKIDYFNAK-AVFVD--KHR---VKF---AGEERTVSAQNFIIAVGGR 119 (164)
Q Consensus 73 ~~~~~l~~~gv~~~~~~-~~~~~--~~~---v~v---~~~~~~~~~d~liiAtGs~ 119 (164)
.+.+.+++.+++++.+. ++.+. ... +.+ ++....+.++.+|+|||.-
T Consensus 195 ~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 195 GLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 34566678899998874 44442 222 222 2223468899999999964
No 499
>PRK06175 L-aspartate oxidase; Provisional
Probab=44.82 E-value=86 Score=25.92 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=27.7
Q ss_pred HHHHhh-cCceEEeeE-EEEe--eCcEE---Ee--CCeeEEEEeceEEEecCCCC
Q psy7674 75 EKELEK-NKIDYFNAK-AVFV--DKHRV---KF--AGEERTVSAQNFIIAVGGRP 120 (164)
Q Consensus 75 ~~~l~~-~gv~~~~~~-~~~~--~~~~v---~v--~~~~~~~~~d~liiAtGs~~ 120 (164)
.+.+++ .||+++.++ ++.+ +...+ .+ ++....+.++.+|+|||+-.
T Consensus 135 ~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 135 LKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 344443 589998874 4443 23321 11 33223688999999999854
No 500
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=44.75 E-value=12 Score=28.16 Aligned_cols=17 Identities=35% Similarity=0.835 Sum_probs=14.0
Q ss_pred ceEEEeccCCccccccc
Q psy7674 54 SVVIFSKSWCPFCTKAK 70 (164)
Q Consensus 54 ~vvv~~~~~cp~~~~~~ 70 (164)
.++.|..+||+.|+...
T Consensus 55 vlV~FyApWC~~Ck~~~ 71 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMA 71 (224)
T ss_pred EEEEEECCCChHHHHHH
Confidence 45678899999999765
Done!