RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7674
(164 letters)
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 119 bits (299), Expect = 4e-32
Identities = 55/92 (59%), Positives = 64/92 (69%), Gaps = 4/92 (4%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA-H 129
Y L + K+ Y NA A FVDKHR+K G+E+ SA+ F+IA G RP YP IPGA
Sbjct: 106 YRVALREKKVKYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIPGAKE 165
Query: 130 LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
L ITSDDLFSL PGK L+VGASY+ALECAG
Sbjct: 166 LCITSDDLFSLPYCPGKTLVVGASYVALECAG 197
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 111 bits (279), Expect = 2e-29
Identities = 44/88 (50%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGIT 133
Y LE N +D A FVD H V+ GE +A + +IA GGRP+ PDIPGA GIT
Sbjct: 99 YRNGLENNGVDLIEGFARFVDAHTVEVNGE--RYTADHILIATGGRPSIPDIPGAEYGIT 156
Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
SD F+L + P +V +VGA YIA+E AG
Sbjct: 157 SDGFFALEELPKRVAVVGAGYIAVEFAG 184
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 101 bits (253), Expect = 1e-25
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 4/93 (4%)
Query: 73 NYEKELEKNKIDYFNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYP-DIPGA- 128
+Y L +K++Y N A D+H V + +E T++A+ +IA GGRP+ P D+PGA
Sbjct: 107 SYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGAK 166
Query: 129 HLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
ITSDD+FSL+KDPGK L+VGASYI LE AG
Sbjct: 167 EYSITSDDIFSLSKDPGKTLIVGASYIGLETAG 199
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 87.2 bits (216), Expect = 1e-20
Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGAHLGI 132
Y+K LEKNK+D A F V+ G + +A + +IA GG+P++P+ IPGA LG
Sbjct: 97 YQKNLEKNKVDVIFGHARFTKDGTVEVNGRD--YTAPHILIATGGKPSFPENIPGAELGT 154
Query: 133 TSDDLFSLNKDPGKVLLVGASYIALECAG 161
SD F+L + P +V++VGA YIA+E AG
Sbjct: 155 DSDGFFALEELPKRVVIVGAGYIAVELAG 183
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 86.1 bits (214), Expect = 2e-20
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 72 NNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEE-RTVSAQNFIIAVGGRPTYPDIPGA-- 128
E L+KN +D +A FVD H V+ GE+ T++A N IIA G RP P PG
Sbjct: 98 GGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDG 157
Query: 129 HLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
+ S D L + P +++VG YI LE A
Sbjct: 158 ARILDSSDALFLLELPKSLVIVGGGYIGLEFAS 190
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria [Energy metabolism,
Electron transport].
Length = 446
Score = 82.9 bits (205), Expect = 3e-19
Identities = 34/91 (37%), Positives = 49/91 (53%)
Query: 71 ENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL 130
Y K L + + +A V + V+ +T +A+ +IAVGGRP P +PG L
Sbjct: 93 SGLYRKGLANAGAELLDGRAELVGPNTVEVLASGKTYTAEKILIAVGGRPPKPALPGHEL 152
Query: 131 GITSDDLFSLNKDPGKVLLVGASYIALECAG 161
GITS++ F L P +L+ G YIA+E AG
Sbjct: 153 GITSNEAFHLPTLPKSILIAGGGYIAVEFAG 183
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 78.7 bits (195), Expect = 1e-17
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
E +K KID A FVD + V+ ER + A+N +IA G R P IPG L
Sbjct: 99 EGLEKKPKIDKIKGTARFVDPNTVE-VNGER-IEAKNIVIATGSR--VPPIPGVWLILGD 154
Query: 132 --ITSDDLFSLNKDPGKVLLVGASYIALE 158
+TSDD F L+K P + ++G I LE
Sbjct: 155 RLLTSDDAFELDKLPKSLAVIGGGVIGLE 183
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 77.0 bits (190), Expect = 1e-17
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 70 KENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAH 129
KE E L +D + V K R ++ IIA G RP P IPG
Sbjct: 67 KEFGVEVLLGTEVVDIDRGEKTVVLKDVET----GREITYDKLIIATGARPRIPGIPGVE 122
Query: 130 LG-----ITSDDLFSLNKDPGKVLLVGASYIALECAG 161
+ I SD++ L + P +V++VG YI LE A
Sbjct: 123 VATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAA 159
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH [Cellular processes,
Detoxification].
Length = 463
Score = 78.2 bits (193), Expect = 1e-17
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 70 KENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG-A 128
+ YE L +DY +A F D VK A+ F+IA G RP P IPG
Sbjct: 90 RHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLK 149
Query: 129 HLG-ITSDDLFSLNKDPGKVLLVGASYIALECA 160
G +TS++ +L++ P + ++G I +E A
Sbjct: 150 EAGYLTSEEALALDRIPESLAVIGGGAIGVELA 182
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 72.9 bits (180), Expect = 1e-15
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 72 NNYEKELEK-NKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG-AH 129
+ E+ L +D F A F + V+ GE T+ A+ I G R P IPG
Sbjct: 98 HGSEQWLRGLEGVDVFRGHARFESPNTVRVGGE--TLRAKRIFINTGARAAIPPIPGLDE 155
Query: 130 LG-ITSDDLFSLNKDPGKVLLVGASYIALECA 160
+G +T++ +FSL++ P ++++G YI LE A
Sbjct: 156 VGYLTNETIFSLDELPEHLVIIGGGYIGLEFA 187
>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin. Glutaredoxins are
thioltransferases (disulfide reductases) which utilize
glutathione and NADPH as cofactors. Oxidized
glutathione is regenerated by glutathione reductase.
Together these components compose the glutathione
system. Glutaredoxins utilize the CXXC motif common to
thioredoxins and are involved in multiple cellular
processes including protection from redox stress,
reduction of critical enzymes such as ribonucleotide
reductase and the generation of reduced sulfur for iron
sulfur cluster formation. Glutaredoxins are capable of
reduction of mixed disulfides of glutathione as well as
the formation of glutathione mixed disulfides. This
model represents eukaryotic glutaredoxins and includes
sequences from fungi, plants and metazoans as well as
viruses.
Length = 84
Score = 65.7 bits (161), Expect = 5e-15
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 10 DYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS 54
++VVELD+L NG++IQ L E TGQ+TVPNIFI+GK I S
Sbjct: 25 KPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCS 69
Score = 43.8 bits (104), Expect = 1e-06
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 16/91 (17%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
VV+FSKS+CP+C KAKE L K + + V +D+ Q+++
Sbjct: 1 VVVFSKSYCPYCKKAKE-----ILAKLNVKP-AYEVVELDQL-------SNGSEIQDYLE 47
Query: 115 AVGGRPTYPDI--PGAHLGITSDDLFSLNKD 143
+ G+ T P+I G +G DL +L K
Sbjct: 48 EITGQRTVPNIFINGKFIG-GCSDLLALYKS 77
>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human
class 1 and 2 (h_1_2)-like subfamily; composed of
proteins similar to human GRXs, approximately 10 kDa in
size, and proteins containing a GRX or GRX-like domain.
GRX is a glutathione (GSH) dependent reductase,
catalyzing the disulfide reduction of target proteins
such as ribonucleotide reductase. It contains a redox
active CXXC motif in a TRX fold and uses a similar
dithiol mechanism employed by TRXs for intramolecular
disulfide bond reduction of protein substrates. Unlike
TRX, GRX has preference for mixed GSH disulfide
substrates, in which it uses a monothiol mechanism
where only the N-terminal cysteine is required. The
flow of reducing equivalents in the GRX system goes
from NADPH -> GSH reductase -> GSH -> GRX -> protein
substrates. By altering the redox state of target
proteins, GRX is involved in many cellular functions
including DNA synthesis, signal transduction and the
defense against oxidative stress. Different classes are
known including human GRX1 and GRX2, which are members
of this subfamily. Also included in this subfamily are
the N-terminal GRX domains of proteins similar to human
thioredoxin reductase 1 and 3.
Length = 82
Score = 65.6 bits (161), Expect = 6e-15
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
VVELD+ +G++IQ L E TGQ+TVPN+FI GK I
Sbjct: 26 KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFI 64
Score = 52.2 bits (126), Expect = 1e-09
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 18/91 (19%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
VV+FSKS+CP+C +AK L++ + V +D+H E Q+++
Sbjct: 2 VVVFSKSYCPYCKRAKSL-----LKELGVKPA---VVELDQH-------EDGSEIQDYLQ 46
Query: 115 AVGGRPTYPD--IPGAHLGITSDDLFSLNKD 143
+ G+ T P+ I G +G DDL +L+K
Sbjct: 47 ELTGQRTVPNVFIGGKFIG-GCDDLMALHKS 76
>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 68.4 bits (167), Expect = 4e-14
Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGIT 133
Y+ L+ + + VD H V G + +A+N +IAVGGRP PDIPG I
Sbjct: 184 YKNILKNAGVTLIEGRGKIVDPHTVDVDG--KLYTARNILIAVGGRPFIPDIPGIEHAID 241
Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
SD L P K+ +VG YIALE AG
Sbjct: 242 SDAALDLPSKPEKIAIVGGGYIALEFAG 269
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 64.0 bits (157), Expect = 1e-12
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 78 LEKNKIDYFNAKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYP-DIPGAHLGI- 132
E+N++D +A FVD H V GE T++A +IA G RP P D+ H I
Sbjct: 104 YERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIY 163
Query: 133 TSDDLFSLNKDPGKVLLVGASYIALECA 160
SD + SL+ P +++ GA I E A
Sbjct: 164 DSDSILSLDHLPRSLIIYGAGVIGCEYA 191
>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 64.1 bits (156), Expect = 1e-12
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL 130
Y++ L + + + V + V + G + +A++ +IA G R P+IPG L
Sbjct: 130 YKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKEL 189
Query: 131 GITSDDLFSLNKDPGKVLLVGASYIALECAG 161
ITSD+ SL + P + +++G YIA+E A
Sbjct: 190 AITSDEALSLEELPKRAVVLGGGYIAVEFAS 220
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 62.3 bits (152), Expect = 4e-12
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 78 LEKNKIDYFNAKAVFVDKHRVKFAGE--ERTVSAQNFIIAVGGRPTYPDIPGAHLG---I 132
L+KNK+ +A F+D V GE E T+ A+N IIA G RP P G I
Sbjct: 99 LKKNKVTVIKGEAKFLDPGTVSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVI 158
Query: 133 TSDDLFSLNKDPGKVLLVGASYIALECA 160
TS +L + P ++++G I +E A
Sbjct: 159 TSTGALNLEEVPESLVIIGGGVIGVEFA 186
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 58.4 bits (142), Expect = 1e-10
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 83 IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA-----HLGITSDDL 137
ID + A F+ ++ E ++A +IA G RP P + H TSD +
Sbjct: 104 IDVYRGHARFIGPKTLRTGDGE-EITADQVVIAAGSRPVIPPVIADSGVRYH---TSDTI 159
Query: 138 FSLNKDPGKVLLVGASYIALECA 160
L + P +++VG +IA E A
Sbjct: 160 MRLPELPESLVIVGGGFIAAEFA 182
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 58.1 bits (140), Expect = 2e-10
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 28/115 (24%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAG---------------------------EERT 106
Y + L+K+ ++YF K + +++V + +
Sbjct: 141 YRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV 200
Query: 107 VSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
+ +N +IAVG +P +PD+ G I+SDD F + K+ ++ + G+ YIA+E
Sbjct: 201 IEGKNILIAVGNKPIFPDVKGKEFTISSDDFFKI-KEAKRIGIAGSGYIAVELIN 254
>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 54.2 bits (130), Expect = 3e-09
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 70 KENNYEKELEKNK-IDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDI 125
+E+ Y+ L +N I N +A FVD+ + G E+TV I G RP P +
Sbjct: 98 RESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPV 157
Query: 126 PGAHLG--ITSDDLFSLNKDPGKVLLVGASYIALECA 160
PG +TS L+ P ++L++GAS +ALE A
Sbjct: 158 PGLAETPYLTSTSALELDHIPERLLVIGASVVALELA 194
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 52.8 bits (128), Expect = 9e-09
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 78 LEKNKIDYFNAKAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRP-TYPDI-PGAHLGIT 133
L+KNK+D +A VD + RV E+T +A+N I+A G RP P I + T
Sbjct: 102 LKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT 161
Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
SD+ +L++ P ++++G YI +E A
Sbjct: 162 SDEALNLDEVPKSLVVIGGGYIGVEFAS 189
>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX,
approximately 10 kDa in size, and proteins containing a
GRX or GRX-like domain. GRX is a glutathione (GSH)
dependent reductase, catalyzing the disulfide reduction
of target proteins such as ribonucleotide reductase. It
contains a redox active CXXC motif in a TRX fold and
uses a similar dithiol mechanism employed by TRXs for
intramolecular disulfide bond reduction of protein
substrates. Unlike TRX, GRX has preference for mixed
GSH disulfide substrates, in which it uses a monothiol
mechanism where only the N-terminal cysteine is
required. The flow of reducing equivalents in the GRX
system goes from NADPH -> GSH reductase -> GSH -> GRX
-> protein substrates. By altering the redox state of
target proteins, GRX is involved in many cellular
functions including DNA synthesis, signal transduction
and the defense against oxidative stress. Different
classes are known including human GRX1 and GRX2, as
well as E. coli GRX1 and GRX3, which are members of
this family. E. coli GRX2, however, is a 24-kDa protein
that belongs to the GSH S-transferase (GST) family.
Length = 72
Score = 47.8 bits (115), Expect = 3e-08
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 10 DYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
+ E+D L +G ++ L E +G TVP IFI+G+ I
Sbjct: 22 SLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFINGEFI 61
Score = 46.3 bits (111), Expect = 1e-07
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 29/94 (30%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSA----Q 110
VV+FSKS CP+C +AK LE I++ EE + +
Sbjct: 2 VVVFSKSTCPYCKRAKRL-----LESLGIEF-----------------EEIDILEDGELR 39
Query: 111 NFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNK 142
+ + G PT P I G +G DDL +L++
Sbjct: 40 EELKELSGWPTVPQIFINGEFIG-GYDDLKALHE 72
>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase.
Trypanothione, a glutathione-modified derivative of
spermidine, is (in its reduced form) an important
antioxidant found in trypanosomatids (Crithidia,
Leishmania, Trypanosoma). This model describes
trypanothione reductase, a possible antitrypanosomal
drug target closely related to some forms of glutathione
reductase.
Length = 486
Score = 49.2 bits (117), Expect = 2e-07
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 106 TVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
+ A++ ++A G P IPG I+S++ F L++ P +VL VG +I++E AG
Sbjct: 149 RLQAEHILLATGSWPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAG 204
>gnl|CDD|239510 cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX
bacterial class 1 and 3 (b_1_3)-like subfamily; composed
of bacterial GRXs, approximately 10 kDa in size, and
proteins containing a GRX or GRX-like domain. GRX is a
glutathione (GSH) dependent reductase, catalyzing the
disulfide reduction of target proteins such as
ribonucleotide reductase. It contains a redox active
CXXC motif in a TRX fold and uses a similar dithiol
mechanism employed by TRXs for intramolecular disulfide
bond reduction of protein substrates. Unlike TRX, GRX
has preference for mixed GSH disulfide substrates, in
which it uses a monothiol mechanism where only the
N-terminal cysteine is required. The flow of reducing
equivalents in the GRX system goes from NADPH -> GSH
reductase -> GSH -> GRX -> protein substrates. By
altering the redox state of target proteins, GRX is
involved in many cellular functions including DNA
synthesis, signal transduction and the defense against
oxidative stress. Different classes are known including
E. coli GRX1 and GRX3, which are members of this
subfamily.
Length = 75
Score = 45.7 bits (109), Expect = 2e-07
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
V I++K CP+C +AK L+K +DY + + VD + I
Sbjct: 2 VEIYTKPNCPYCVRAK-----ALLDKKGVDY---EEIDVDGDPALR---------EEMIN 44
Query: 115 AVGGRPTYPDI--PGAHLGITSDDLFSLNKD 143
GGR T P I H+G DDL++L +
Sbjct: 45 RSGGRRTVPQIFIGDVHIG-GCDDLYALERK 74
Score = 28.3 bits (64), Expect = 0.55
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 33 ERTGQ-KTVPNIFIHGKHI 50
R+G +TVP IFI HI
Sbjct: 44 NRSGGRRTVPQIFIGDVHI 62
>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a
glutathione analog in Mycobacterium tuberculosis and
related species, can form a disulfide-linked dimer
called mycothione. This enzyme can reduce mycothione to
regenerate two mycothiol molecules. The enzyme shows
some sequence similarity to glutathione-disulfide
reductase, trypanothione-disulfide reductase, and
dihydrolipoamide dehydrogenase. The characterized
protein from M. tuberculosis, a homodimer, has FAD as a
cofactor, one per monomer, and uses NADPH as a
substrate.
Length = 452
Score = 49.0 bits (117), Expect = 2e-07
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGI- 132
Y + E ID ++ A FV ++ G+ ++ +IA G RP P A G+
Sbjct: 98 YRRGDETPNIDVYDGHARFVGPRTLR-TGDGEEITGDQIVIAAGSRPYIPPAI-ADSGVR 155
Query: 133 --TSDDLFSLNKDPGKVLLVGASYIALECA 160
T++D+ L + P +++VG YIA E A
Sbjct: 156 YHTNEDIMRLPELPESLVIVGGGYIAAEFA 185
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 48.7 bits (117), Expect = 3e-07
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 78 LEKNKIDYFNAKAVFVDKH---------RVKFA-GEERTVSAQNFIIAVGGRP-TYPDIP 126
L+K KID F+ + V+ GE + +N +IA G RP P +P
Sbjct: 102 LKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP 161
Query: 127 -GAHLGITSDDLFSLNKDPGKVLLVGASYIALECA 160
I+SD+ SL P +++VG I LE A
Sbjct: 162 FDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWA 196
>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational
modification, protein turnover, chaperones].
Length = 80
Score = 45.4 bits (108), Expect = 3e-07
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 19/91 (20%)
Query: 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFI 113
+V I++K CP+C +AK + L++ +DY + + VD A+ +
Sbjct: 2 NVTIYTKPGCPYCKRAK-----RLLDRKGVDY---EEIDVDDD--------EPEEAREMV 45
Query: 114 IAVGGRPTYPDI--PGAHLGITSDDLFSLNK 142
G+ T P I G H+G DDL +L
Sbjct: 46 KRGKGQRTVPQIFIGGKHVG-GCDDLDALEA 75
Score = 37.7 bits (88), Expect = 3e-04
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 10 DYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
+++ +++D + + + GQ+TVP IFI GKH+
Sbjct: 25 GVDYEEIDVDDDE-PEEAREMVKRGKGQRTVPQIFIGGKHV 64
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 48.6 bits (116), Expect = 3e-07
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 78 LEKNKIDYFNAKAVFVDKHR--VKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG---- 131
++KNKI KA F HR V++ +E V A+ FIIA G PT ++P A
Sbjct: 100 MKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPT--ELPFAPFDGKWI 157
Query: 132 ITSDDLFSLNKDPGKVLLVGASYIALECAG 161
I S SL P +L+VG I E A
Sbjct: 158 INSKHAMSLPSIPSSLLIVGGGVIGCEFAS 187
>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin.
Length = 60
Score = 44.8 bits (107), Expect = 4e-07
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 18/69 (26%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
VV+F+K CPFC +AK L+ + + + + VD+ + +
Sbjct: 1 VVLFTKPTCPFCKRAKR-----LLDSLGVKF---EEIDVDEDP----------EIREELK 42
Query: 115 AVGGRPTYP 123
+ G PT P
Sbjct: 43 ELSGWPTVP 51
Score = 42.5 bits (101), Expect = 3e-06
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
F+ +++D+ P +I+ L E +G TVP +FI G+HI
Sbjct: 25 KFEEIDVDEDP---EIREELKELSGWPTVPQVFIDGEHI 60
>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 441
Score = 46.2 bits (109), Expect = 2e-06
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 70 KENNYEKELEKNKIDYFNAKAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 127
+ N+ + ID + +A F++ H RV + + I G + P IPG
Sbjct: 79 RNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPG 138
Query: 128 --AHLGI-TSDDLFSLNKDPGKVLLVGASYIALECA 160
G+ S L +L + PG + ++G YI +E A
Sbjct: 139 ITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFA 174
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 43.4 bits (103), Expect = 1e-05
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 81 NKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLG---IT 133
K+ N F + ++ G+ + N IIA G RP +P H
Sbjct: 106 RKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI--QLPFIPHDDPRIWD 163
Query: 134 SDDLFSLNKDPGKVLLVGASYIALE 158
S D L + P ++L++G I LE
Sbjct: 164 STDALELKEVPKRLLVMGGGIIGLE 188
>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 42.2 bits (99), Expect = 4e-05
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 74 YEKELEKN-KIDYFNAKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPDIPG-- 127
Y+ L+ N + A F D + + G ER ++A +IA G PT P IPG
Sbjct: 112 YQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLM 171
Query: 128 -AHLGITSDDLFSLNKDPGKVLLVGASYIALECA 160
+++ LFS ++ P + ++G+S +A E A
Sbjct: 172 DTPYWTSTEALFS-DELPASLTVIGSSVVAAEIA 204
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 42.2 bits (100), Expect = 4e-05
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 80 KNKIDYFNAKAVFV----DKHRVKFAGE-ERTVSAQNFIIAVGGRP-TYPDIPGAHLGIT 133
KNKI + FV + +K GE E ++A++ IIA G P P +P + I
Sbjct: 112 KNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIIL 171
Query: 134 SDD-LFSLNKDPGKVLLVGASYIALE 158
+ + + P K+ ++GA I LE
Sbjct: 172 DNTGALNFTEVPKKLAVIGAGVIGLE 197
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 41.3 bits (97), Expect = 8e-05
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 74 YEKELEKN-KIDYFNAKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPDIPGAH 129
YE L+ N I + +A F D + G ER V+ +IA G P P IPG
Sbjct: 194 YEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPG-- 251
Query: 130 LGIT-----SDDLFSLNKDPGKVLLVGASYIALECA 160
L T ++ L S + P ++ ++G+S +ALE A
Sbjct: 252 LKETPYWTSTEALVS-DTIPERLAVIGSSVVALELA 286
>gnl|CDD|239327 cd03029, GRX_hybridPRX5, Glutaredoxin (GRX) family, PRX5 hybrid
subfamily; composed of hybrid proteins containing
peroxiredoxin (PRX) and GRX domains, which is found in
some pathogenic bacteria and cyanobacteria. PRXs are
thiol-specific antioxidant (TSA) proteins that confer a
protective antioxidant role in cells through their
peroxidase activity in which hydrogen peroxide,
peroxynitrate, and organic hydroperoxides are reduced
and detoxified using reducing equivalents derived from
either thioredoxin, glutathione, trypanothione and AhpF.
GRX is a glutathione (GSH) dependent reductase,
catalyzing the disulfide reduction of target proteins.
PRX-GRX hybrid proteins from Haemophilus influenza and
Neisseria meningitis exhibit GSH-dependent peroxidase
activity. The flow of reducing equivalents in the
catalytic cycle of the hybrid protein goes from NADPH ->
GSH reductase -> GSH -> GRX domain of hybrid -> PRX
domain of hybrid -> peroxide substrate.
Length = 72
Score = 38.7 bits (90), Expect = 8e-05
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 22/86 (25%)
Query: 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFI 113
SV +F+K CPFC +AK L++N I Y + + + K + S +
Sbjct: 2 SVSLFTKPGCPFCARAKA-----ALQENGISY---EEIPLGK-------DITGRSLR--- 43
Query: 114 IAVGGRPTYPD--IPGAHLGITSDDL 137
AV G T P I G +G SDDL
Sbjct: 44 -AVTGAMTVPQVFIDGELIG-GSDDL 67
Score = 27.1 bits (60), Expect = 1.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 35 TGQKTVPNIFIHGKHI 50
TG TVP +FI G+ I
Sbjct: 46 TGAMTVPQVFIDGELI 61
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 41.2 bits (97), Expect = 9e-05
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 20/95 (21%)
Query: 78 LEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
++KNKI + F D + ++ G TV+ N IIA G +PG L
Sbjct: 102 MKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRL--LPGTSLSENV 159
Query: 132 ------ITSDDLFSLNKDPGKVLLVGASYIALECA 160
I S +L P +++ GA I +E A
Sbjct: 160 VTYEEQILSREL------PKSIVIAGAGAIGMEFA 188
>gnl|CDD|233766 TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are
thioltransferases (disulfide reductases) which utilize
glutathione and NADPH as cofactors. Oxidized glutathione
is regenerated by glutathione reductase. Together these
components compose the glutathione system. Glutaredoxins
utilize the CXXC motif common to thioredoxins and are
involved in multiple cellular processes including
protection from redox stress, reduction of critical
enzymes such as ribonucleotide reductase and the
generation of reduced sulfur for iron sulfur cluster
formation. Glutaredoxins are capable of reduction of
mixed disulfides of glutathione as well as the formation
of glutathione mixed disulfides. This family of
glutaredoxins includes the E. coli protein GrxC (Grx3)
which appears to have a secondary role in reducing
ribonucleotide reductase (in the absence of GrxA)
possibly indicating a role in the reduction of other
protein disulfides [Energy metabolism, Electron
transport].
Length = 79
Score = 38.4 bits (90), Expect = 1e-04
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 21/90 (23%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
V I++K +CP+CT+AK L + + + RV R + ++
Sbjct: 1 VTIYTKPYCPYCTRAK-----ALLSSKGVTF--------TEIRVDGDPALR-----DEMM 42
Query: 115 AVGGRPTYPDI--PGAHLGITSDDLFSLNK 142
GR T P I H+G DDL++L++
Sbjct: 43 QRSGRRTVPQIFIGDVHVG-GCDDLYALDR 71
Score = 32.6 bits (75), Expect = 0.018
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 33 ERTGQKTVPNIFIHGKHI 50
+R+G++TVP IFI H+
Sbjct: 43 QRSGRRTVPQIFIGDVHV 60
>gnl|CDD|233771 TIGR02189, GlrX-like_plant, Glutaredoxin-like family. This
family of glutaredoxin-like proteins is aparrently
limited to plants. Multiple isoforms are found in A.
thaliana and O.sativa.
Length = 99
Score = 38.2 bits (89), Expect = 2e-04
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 15 VVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
V E+DK P G I+ AL VP +F+ GK +
Sbjct: 37 VHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLV 72
>gnl|CDD|239274 cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small
monomeric protein with a conserved redox active CXXC
motif within a TRX fold, characterized by a glutaredoxin
(GRX)-like sequence and TRX-like activity profile. In
vitro, it displays protein disulfide reductase activity
that is dependent on TRX reductase, not glutathione
(GSH). It is part of the NrdHIEF operon, where NrdEF
codes for class Ib ribonucleotide reductase (RNR-Ib), an
efficient enzyme at low oxygen levels. Under these
conditions when GSH is mostly conjugated to spermidine,
NrdH can still function and act as a hydrogen donor for
RNR-Ib. It has been suggested that the NrdHEF system may
be the oldest RNR reducing system, capable of
functioning in a microaerophilic environment, where GSH
was not yet available. NrdH from Corynebacterium
ammoniagenes can form domain-swapped dimers, although it
is unknown if this happens in vivo. Domain-swapped
dimerization, which results in the blocking of the TRX
reductase binding site, could be a mechanism for
regulating the oxidation state of the protein.
Length = 73
Score = 37.2 bits (87), Expect = 3e-04
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFA 101
V +++K CP+C K + L++ I + + V VD+
Sbjct: 2 VTVYTKPDCPYCKATK-----RFLDERGIPF---EEVDVDEDPEALE 40
>gnl|CDD|131245 TIGR02190, GlrX-dom, Glutaredoxin-family domain. This C-terminal
domain with homology to glutaredoxin is fused to an
N-terminal peroxiredoxin-like domain.
Length = 79
Score = 37.1 bits (86), Expect = 4e-04
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 22/86 (25%)
Query: 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFI 113
SVV+F+K CPFC KAK L++ D+ + + + + R S +
Sbjct: 9 SVVVFTKPGCPFCAKAKAT-----LKEKGYDF---EEIPLGN-------DARGRS----L 49
Query: 114 IAVGGRPTYPD--IPGAHLGITSDDL 137
AV G T P I G +G SD+L
Sbjct: 50 RAVTGATTVPQVFIGGKLIG-GSDEL 74
Score = 28.7 bits (64), Expect = 0.38
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 11 YNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
Y+F+ + L G ++ TG TVP +FI GK I
Sbjct: 33 YDFEEIPLGNDARGRSLRAV----TGATTVPQVFIGGKLI 68
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 38.3 bits (89), Expect = 0.001
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 78 LEKNKIDYFNAKAVFVDKHRVKFAGE---ERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
KNK+D+ +V E E + A++ +IA G PT +PG +
Sbjct: 103 FRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT--PLPGVTIDNQR 160
Query: 132 -ITSDDLFSLNKDPGKVLLVGASYIALE 158
I S SL + P ++++GA I LE
Sbjct: 161 IIDSTGALSLPEVPKHLVVIGAGVIGLE 188
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 37.8 bits (88), Expect = 0.001
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 75 EKELEKNKIDYFNAKAVFVDKHRVKF-AGEERT-VSAQNFIIAVGGRPTYPDIPG---AH 129
L + +D ++A+A FV ++ AG+E+ ++A+ +I G IPG +
Sbjct: 83 YAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSK 142
Query: 130 LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
S + SL P ++ ++G I LE AG
Sbjct: 143 HVYDSTGIQSLETLPERLGIIGGGNIGLEFAG 174
>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain.
Length = 105
Score = 34.7 bits (80), Expect = 0.005
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 46 HGKHIDNNSVVIFSKSWCPFCTKAKE-----NNYEKELEKNKIDYFNAKAVFVDKHRVKF 100
+GK + +V+F+ CP+C K + + ++ L+ N F V VD +
Sbjct: 4 NGKPV----LVVFTDPDCPYCKKLHKELLKDPDVQEYLKDN----FVVIYVNVDDSKEVT 55
Query: 101 AGEERTVSAQNF--IIAVGGRPTY 122
+ T+S + V G PT
Sbjct: 56 DFDGETLSEKELARKYGVRGTPTI 79
>gnl|CDD|224118 COG1197, Mfd, Transcription-repair coupling factor (superfamily II
helicase) [DNA replication, recombination, and repair /
Transcription].
Length = 1139
Score = 36.1 bits (84), Expect = 0.006
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 83 IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNK 142
DY + V RV A EE +F A YP +P L +++++LF L K
Sbjct: 266 FDYLPKNTLIVVDERVLEAAEEFEKEVADFYEARLSDGEYPPLPPEALYLSAEELFELLK 325
Query: 143 DPGKVLL 149
++ L
Sbjct: 326 PVPRISL 332
>gnl|CDD|239325 cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishevelled, Egl-10,
and Pleckstrin (DEP) subfamily; composed of
uncharacterized proteins containing a GRX domain and
additional domains DEP and DUF547, both of which have
unknown functions. GRX is a glutathione (GSH)
dependent reductase containing a redox active CXXC
motif in a TRX fold. It has preference for mixed GSH
disulfide substrates, in which it uses a monothiol
mechanism where only the N-terminal cysteine is
required. By altering the redox state of target
proteins, GRX is involved in many cellular functions.
Length = 73
Score = 32.8 bits (75), Expect = 0.013
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 16 VELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSV 55
+ +D P + + L ERTG VP IF + K + +
Sbjct: 31 INIDIFP---ERKAELEERTGSSVVPQIFFNEKLVGGLTD 67
>gnl|CDD|183036 PRK11200, grxA, glutaredoxin 1; Provisional.
Length = 85
Score = 33.1 bits (76), Expect = 0.014
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKH 96
VVIF + CP+C +AKE EK + + +VD H
Sbjct: 3 VVIFGRPGCPYCVRAKE-----LAEKLSEERDDFDYRYVDIH 39
>gnl|CDD|182607 PRK10638, PRK10638, glutaredoxin 3; Provisional.
Length = 83
Score = 32.9 bits (75), Expect = 0.015
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 21/90 (23%)
Query: 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFI 113
+V I++K+ CPFC +AK N+K V + + +R +
Sbjct: 3 NVEIYTKATCPFCHRAKA-------------LLNSKGVSFQEIPIDGDAAKREE-----M 44
Query: 114 IAVGGRPTYPD--IPGAHLGITSDDLFSLN 141
I GR T P I H+G DDL++L+
Sbjct: 45 IKRSGRTTVPQIFIDAQHIG-GCDDLYALD 73
Score = 32.5 bits (74), Expect = 0.020
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 13 FQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
FQ + +D A + + +R+G+ TVP IFI +HI
Sbjct: 29 FQEIPID---GDAAKREEMIKRSGRTTVPQIFIDAQHI 63
>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring).
This is family of Rossmann fold oxidoreductases that
catalyzes the NADPH-dependent hydroxylation of lysine at
the N6 position, EC:1.14.13.59.
Length = 335
Score = 34.4 bits (80), Expect = 0.019
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 97 RVKFAGEERTVSAQNFIIAVGGRPTYPD----IPGAHLGITSDDLFSLNKD--PGKVLLV 150
+ G E+T A+N ++ G P P+ +PG + +S+ L + ++ +V
Sbjct: 132 HTRDTGTEQTYLARNLVLGTGTTPYIPECAKPLPGERVFHSSEYLLRKPRLLAGKRITVV 191
Query: 151 GA 152
G
Sbjct: 192 GG 193
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 34.1 bits (78), Expect = 0.021
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 25/136 (18%)
Query: 48 KHIDNNSVVIFSKSW------CPFCTKAKENNYEKEL--------EKNKIDYFN---AKA 90
+ + + + + CP E ID +
Sbjct: 19 RLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTS 78
Query: 91 VFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGIT------SDDLFSLNKDP 144
+ + V E + ++A G RP P I +T ++ L + P
Sbjct: 79 IDPENKVVLLDDGE--IEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPP 136
Query: 145 GKVLLVGASYIALECA 160
V++VGA I LE A
Sbjct: 137 KDVVVVGAGPIGLEAA 152
>gnl|CDD|224565 COG1651, DsbG, Protein-disulfide isomerase [Posttranslational
modification, protein turnover, chaperones].
Length = 244
Score = 33.7 bits (77), Expect = 0.025
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 11/89 (12%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTV------PNIFIHGKHIDNNSVVIFSKSWCPF 65
++ + LP Q A+ G V + G +VV F CP+
Sbjct: 39 GVKIEVIKALPGSVAGQLAVVTNLGVTIVLYLTPDGKDVVLGNPYAPVTVVEFFDYTCPY 98
Query: 66 CTKAKENNYEKELEKNKIDYFNAKAVFVD 94
C +A EL+K ID + V +
Sbjct: 99 CKEAFP-----ELKKKYIDDGKVRLVLRE 122
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC
1.8.1.14), as characterized in Staphylococcus aureus,
Pyrococcus horikoshii, and Borrelia burgdorferi, and
inferred in several other species on the basis of high
levels of CoA and an absence of glutathione as a
protective thiol [Cellular processes, Detoxification].
Length = 427
Score = 32.8 bits (75), Expect = 0.064
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 17/103 (16%)
Query: 75 EKELEKNKID-YFNAKAVFVDKHR----VKFAGEERT--VSAQNFIIAVGGRPTYPDIPG 127
E ++K ID N + + V+ R V+ T S I++ G P P+I G
Sbjct: 51 EVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEG 110
Query: 128 AHLGI--TSDDL--------FSLNKDPGKVLLVGASYIALECA 160
+L I T +L + V+++G YI +E A
Sbjct: 111 INLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMA 153
>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase.
Length = 457
Score = 32.8 bits (75), Expect = 0.069
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 24/94 (25%)
Query: 34 RTGQKTVPNIFIHG-------KHIDN---------NSVVIFSKSWCPFCTKAKENNYEKE 77
G V +IF I+N +V+ WCPFC +A E +YE+
Sbjct: 332 DNGNAAVADIFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFC-QAMEASYEEL 390
Query: 78 LEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQN 111
EK V V K R G+++ + Q
Sbjct: 391 AEK-----LAGSGVKVAKFRAD--GDQKEFAKQE 417
>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS)
reductase subfamily; composed of plant-type APS
reductases containing a C-terminal redox active TRX
domain and an N-terminal reductase domain which is part
of a superfamily that includes N type ATP PPases. APS
reductase catalyzes the reduction of activated sulfate
to sulfite, a key step in the biosynthesis of
sulfur-containing metabolites. Sulfate is first
activated by ATP sulfurylase, forming APS, which can be
phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate
(PAPS). Depending on the organism, either APS or PAPS
can be used for sulfate reduction. Prokaryotes and fungi
use PAPS, whereas plants use both APS and PAPS. Since
plant-type APS reductase uses glutathione (GSH) as its
electron donor, the C-terminal domain may function like
glutaredoxin, a GSH-dependent member of the TRX
superfamily. The flow of reducing equivalents goes from
GSH -> C-terminal TRX domain -> N-terminal reductase
domain -> APS. Plant-type APS reductase shows no
homology to that of dissimilatory sulfate-reducing
bacteria, which is an iron-sulfur flavoenzyme. Also
included in the alignment is EYE2 from Chlamydomonas
reinhardtii, a protein required for eyespot assembly.
Length = 109
Score = 31.3 bits (71), Expect = 0.086
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 27/85 (31%)
Query: 51 DNNSVVIFSKSWCPFCTKAKENNYEKELEKN-----KIDYFNAKA--------------- 90
+ +++V+ WCPFC +A E +YE+ EK K+ FNA
Sbjct: 21 NQSTLVVLYAPWCPFC-QAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSF 79
Query: 91 ---VFVDKHR---VKFAGEERTVSA 109
+F K+ +K+ E+R V +
Sbjct: 80 PTILFFPKNSRQPIKYPSEQRDVDS 104
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 32.3 bits (74), Expect = 0.11
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 79 EKNKID-YFNAKAVFVD-KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-GI--- 132
E+N I Y K + +D ++V RTVS IIA G P IPG+ L G+
Sbjct: 70 EENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVY 129
Query: 133 -TSDDLFSL---NKDPGKVLLVGASYIALECAG 161
T DD+ ++ ++ K +++G + LE A
Sbjct: 130 RTIDDVEAMLDCARNKKKAVVIGGGLLGLEAAR 162
>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family,
TryX and nucleoredoxin (NRX) subfamily; TryX and NRX
are thioredoxin (TRX)-like protein disulfide
oxidoreductases that alter the redox state of target
proteins via the reversible oxidation of an active
center CXXC motif. TryX is involved in the regulation
of oxidative stress in parasitic trypanosomatids by
reducing TryX peroxidase, which in turn catalyzes the
reduction of hydrogen peroxide and organic
hydroperoxides. TryX derives reducing equivalents from
reduced trypanothione, a polyamine peptide conjugate
unique to trypanosomatids, which is regenerated by the
NADPH-dependent flavoprotein trypanothione reductase.
Vertebrate NRX is a 400-amino acid nuclear protein with
one redox active TRX domain containing a CPPC active
site motif followed by one redox inactive TRX-like
domain. Mouse NRX transcripts are expressed in all
adult tissues but is restricted to the nervous system
and limb buds in embryos. Plant NRX, longer than the
vertebrate NRX by about 100-200 amino acids, is a
nuclear protein containing a redox inactive TRX-like
domain between two redox active TRX domains. Both
vertebrate and plant NRXs show thiol oxidoreductase
activity in vitro. Their localization in the nucleus
suggests a role in the redox regulation of nuclear
proteins such as transcription factors.
Length = 131
Score = 30.7 bits (70), Expect = 0.17
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 34 RTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFC---TKAKENNYEKELEKNKIDYFNAKA 90
R VP + GK + + FS SWCP C T YEK E K N +
Sbjct: 5 RNDGGKVPVSSLEGKTV----GLYFSASWCPPCRAFTPKLVEFYEKLKESGK----NFEI 56
Query: 91 VFV 93
VF+
Sbjct: 57 VFI 59
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 31.2 bits (71), Expect = 0.21
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 82 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL----------- 130
K+D K + V K+ G + +IA G RP P I +L
Sbjct: 81 KVD-AKNKTITV-KNLKT--GSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMED 136
Query: 131 GITSDDLFSLNKDPGKVLLVGASYIALECA 160
G+ +L +++ ++++GA +I LE
Sbjct: 137 GLALKELLK-DEEIKNIVIIGAGFIGLEAV 165
>gnl|CDD|131251 TIGR02196, GlrX_YruB, Glutaredoxin-like protein, YruB-family.
This glutaredoxin-like protein family contains the
conserved CxxC motif and includes the Clostridium
pasteurianum protein YruB which has been cloned from a
rubredoxin operon. Somewhat related to NrdH, it is
unknown whether this protein actually interacts with
glutathione/glutathione reducatase, or, like NrdH, some
other reductant system.
Length = 74
Score = 28.9 bits (65), Expect = 0.38
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85
V +++ WCP C KAKE L I +
Sbjct: 2 VKVYTTPWCPPCKKAKE-----YLTSKGIAF 27
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 29.9 bits (68), Expect = 0.65
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 87 NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 128
+ D +V A + +S ++A+G Y IPGA
Sbjct: 79 EVTDIDRDAKKVTLA-DLGEISYDYLVVALGSETNYFGIPGA 119
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 29.5 bits (67), Expect = 0.74
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 20/64 (31%)
Query: 100 FAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALEC 159
+ G+ + +A+ IIA G LGI +D F G+ G SY C
Sbjct: 91 YTGDGKEYTAKAVIIATGASARK-------LGIPGEDEFW-----GR----GVSY----C 130
Query: 160 AGCD 163
A CD
Sbjct: 131 ATCD 134
>gnl|CDD|131238 TIGR02183, GRXA, Glutaredoxin, GrxA family. Glutaredoxins are
thioltransferases (disulfide reductases) which utilize
glutathione and NADPH as cofactors. Oxidized
glutathione is regenerated by glutathione reductase.
Together these components compose the glutathione
system. Glutaredoxins utilize the CXXC motif common to
thioredoxins and are involved in multiple cellular
processes including protection from redox stress,
reduction of critical enzymes such as ribonucleotide
reductase and the generation of reduced sulfur for iron
sulfur cluster formation. Glutaredoxins are capable of
reduction of mixed disulfides of glutathione as well as
the formation of glutathione mixed disulfides. This
model includes the E. coli glyutaredoxin GrxA which
appears to have primary responsibility for the
reduction of ribonucleotide reductase.
Length = 86
Score = 27.9 bits (62), Expect = 0.82
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKH 96
VVIF + CP+C +AK+ E + F + ++D H
Sbjct: 2 VVIFGRPGCPYCVRAKQ---LAEKLAIERADFEFR--YIDIH 38
>gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family;
composed of TryX and related proteins including
nucleoredoxin (NRX), rod-derived cone viability factor
(RdCVF) and the nematode homolog described as a 16-kD
class of TRX. Most members of this family, except
RdCVF, are protein disulfide oxidoreductases containing
an active site CXXC motif, similar to TRX.
Length = 132
Score = 28.7 bits (65), Expect = 0.86
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 31 LFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFC 66
LF G+ VP + GK + + FS SWCP C
Sbjct: 1 LFLLDGEGVVPVSALEGKTV----GLYFSASWCPPC 32
>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 27.9 bits (63), Expect = 0.87
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 146 KVLLVGASYIALECAG 161
+V++VG YI LE A
Sbjct: 1 RVVVVGGGYIGLEFAS 16
>gnl|CDD|129481 TIGR00385, dsbE, periplasmic protein thiol:disulfide
oxidoreductases, DsbE subfamily. Involved in the
biogenesis of c-type cytochromes as well as in
disulfide bond formation in some periplasmic proteins
[Protein fate, Protein folding and stabilization].
Length = 173
Score = 29.0 bits (65), Expect = 0.88
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 10 DYNFQVVELDKLPNG-------AQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSW 62
N + + LP+ A +L E GQ ++ GK + ++ SW
Sbjct: 20 ARNAEGDDPKALPSALIGKPVPAFRLASLDE-PGQFYTADVLTQGKPV----LLNVWASW 74
Query: 63 CPFCTKAKENNYEKELEKNKI 83
CP C E+ Y EL K +
Sbjct: 75 CPPCR--AEHPYLNELAKQGL 93
>gnl|CDD|239250 cd02952, TRP14_like, Human TRX-related protein 14 (TRP14)-like
family; composed of proteins similar to TRP14, a 14kD
cytosolic protein that shows disulfide reductase
activity in vitro with a different substrate
specificity compared with another human cytosolic
protein, TRX1. TRP14 catalyzes the reduction of small
disulfide-containing peptides but does not reduce
disulfides of ribonucleotide reductase, peroxiredoxin
and methionine sulfoxide reductase, which are TRX1
substrates. TRP14 also plays a role in tumor necrosis
factor (TNF)-alpha signaling pathways, distinct from
that of TRX1. Its depletion promoted TNF-alpha induced
activation of c-Jun N-terminal kinase and
mitogen-activated protein kinases.
Length = 119
Score = 28.1 bits (63), Expect = 1.1
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 13/76 (17%)
Query: 18 LDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKE 77
L+ G + L + K + +F K D +SWCP C KA E +
Sbjct: 2 LETAVRGYEEFLKLLKSHEGKPIFILFYGDKDPD-------GQSWCPDCVKA-EPVVREA 53
Query: 78 LEKNKIDYFNAKAVFV 93
L+ VF+
Sbjct: 54 LKA-----APEDCVFI 64
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 29.0 bits (65), Expect = 1.2
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 79 EKNKID-YFNAKAVFVDK-HRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA-----HLG 131
EK+ I Y + +D + RT+S I+A G P IPGA ++
Sbjct: 65 EKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVF 124
Query: 132 ITSDDL---FSLNKDPGKVLLVGASYIALECAG 161
T +DL ++ + K ++G + LE A
Sbjct: 125 RTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAV 157
>gnl|CDD|165343 PHA03050, PHA03050, glutaredoxin; Provisional.
Length = 108
Score = 28.1 bits (62), Expect = 1.3
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 15/54 (27%)
Query: 48 KHIDNNSVVIFSKSWCPFCTKA---------KENNYE----KELE-KNKI-DYF 86
+ + NN V IF K CPFC A K YE KE + +N++ DYF
Sbjct: 8 QRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYF 61
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 28.7 bits (64), Expect = 1.4
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 72 NNYEKELEKNKIDYFNAKAV-------FVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD 124
E L+ K + VDK+ +K + +N IIA G P PD
Sbjct: 231 GGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPD 290
Query: 125 ---IPGAHLGITSDDLFSLNKDPGKVLLVGASYIALE 158
+ + TSD L + +VG I LE
Sbjct: 291 NIEVDQKSV-FTSDTAVKLEGLQNYMGIVGMGIIGLE 326
>gnl|CDD|218677 pfam05652, DcpS, Scavenger mRNA decapping enzyme (DcpS)
N-terminal. This family consists of several scavenger
mRNA decapping enzymes (DcpS) and is the N-terminal
domain of these proteins. DcpS is a scavenger
pyrophosphatase that hydrolyses the residual cap
structure following 3' to 5' decay of an mRNA. The
association of DcpS with 3' to 5' exonuclease exosome
components suggests that these two activities are
linked and there is a coupled exonucleolytic
decay-dependent decapping pathway.
Length = 99
Score = 27.6 bits (62), Expect = 1.5
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
Query: 43 IFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYE--------KELEKNKIDYFNAKAV 91
I + GK D ++++I K+ PF + Y K + N I Y +V
Sbjct: 20 ISLLGKIDDQDAILILEKT--PF-QEETLAEYSLLSGISELKLIFSNDI-YGWYLSV 72
>gnl|CDD|119307 pfam10787, YfmQ, Uncharacterized protein from bacillus cereus
group. This family is conserved in the Bacillus cereus
group. Several members are called YfmQ but the function
is not known.
Length = 149
Score = 27.4 bits (61), Expect = 2.2
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 72 NNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQN 111
N E E + I FN +A+F++K+ + EE + +N
Sbjct: 52 KNLEGEEKSRIIQEFN-EAIFLEKYYIYPGDEELFLHPEN 90
>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large,
diverse group of proteins containing a TRX-fold. Many
members contain a classic TRX domain with a redox
active CXXC motif. They function as protein disulfide
oxidoreductases (PDOs), altering the redox state of
target proteins via the reversible oxidation of their
active site dithiol. The PDO members of this
superfamily include TRX, protein disulfide isomerase
(PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the
bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma)
protein families. Members of the superfamily that do
not function as PDOs but contain a TRX-fold domain
include phosducins, peroxiredoxins and glutathione
(GSH) peroxidases, SCO proteins, GSH transferases (GST,
N-terminal domain), arsenic reductases, TRX-like
ferredoxins and calsequestrin, among others.
Length = 69
Score = 26.5 bits (58), Expect = 2.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 55 VVIFSKSWCPFCTKAKE 71
+V+F WCPFC +
Sbjct: 1 LVLFYAPWCPFCQALRP 17
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 27.8 bits (63), Expect = 2.7
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 92 FVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDD 136
+ G E + A ++A+G + G+ D+
Sbjct: 372 LGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQF-GVELDE 415
>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase,
thioredoxin-independent. This enzyme, involved in the
assimilation of inorganic sulfate, is closely related to
the thioredoxin-dependent PAPS reductase of Bacteria
(CysH) and Saccharomyces cerevisiae. However, it has its
own C-terminal thioredoxin-like domain and is not
thioredoxin-dependent. Also, it has a substrate
preference for 5'-adenylylsulfate (APS) over
3'-phosphoadenylylsulfate (PAPS) so the pathway does not
require an APS kinase (CysC) to convert APS to PAPS.
Arabidopsis thaliana appears to have three isozymes, all
able to complement E. coli CysH mutants (even in
backgrounds lacking thioredoxin or APS kinase) but
likely localized to different compartments in
Arabidopsis [Central intermediary metabolism, Sulfur
metabolism].
Length = 463
Score = 27.7 bits (61), Expect = 3.4
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
+V+ WCPFC +A E +Y + EK V V K R G+++ + Q +
Sbjct: 375 LVVLYAPWCPFC-QAMEASYLELAEK-----LAGSGVKVAKFRAD--GDQKEFAKQE--L 424
Query: 115 AVGGRPT 121
+G PT
Sbjct: 425 QLGSFPT 431
>gnl|CDD|215105 PLN00211, PLN00211, predicted protein; Provisional.
Length = 61
Score = 25.5 bits (56), Expect = 3.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 53 NSVVIFSKSWCPFCT 67
NSVVIF KS+ P T
Sbjct: 19 NSVVIFEKSYLPHMT 33
>gnl|CDD|238919 cd01944, YegV_kinase_like, YegV-like sugar kinase. Found only in
bacteria, YegV-like kinase is part of the
ribokinase/pfkB sugar kinase superfamily. Its
oligomerization state is unknown at this time.
Length = 289
Score = 27.4 bits (61), Expect = 3.9
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 117 GGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
G ++ I GA +++ +L P + + +A E A
Sbjct: 98 DGERSFISISGAEQDWSTEWFATLTVAPYDYVYLSGYTLASENAS 142
>gnl|CDD|184972 PRK15010, PRK15010, ABC transporter lysine/arginine/ornithine
binding periplasmic protein; Provisional.
Length = 260
Score = 26.9 bits (59), Expect = 5.2
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 78 LEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDI---PGAHLGI 132
L+ KID + DK + + A ++ +A + +IA G P P + G H+G+
Sbjct: 81 LKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLDSLKGKHVGV 138
>gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase.
Length = 1085
Score = 27.2 bits (60), Expect = 5.4
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 13/54 (24%)
Query: 58 FSKSWCPFCTKAKENNYEKELEK----NKIDYFNAKAVFVDKHRVKFAGEERTV 107
F++ W PFC K++N E + KIDY DK + F E R +
Sbjct: 415 FARKWVPFC---KKHNIEPRAPEFYFAQKIDYLK------DKIQPSFVKERRAM 459
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase. Cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues, is the major component of wood and
thus paper, and is synthesised by plants, most algae,
some bacteria and fungi, and even some animals. The
genes that synthesise cellulose in higher plants differ
greatly from the well-characterized genes found in
Acetobacter and Agrobacterium sp. More correctly
designated as 'cellulose synthase catalytic subunits',
plant cellulose synthase (CesA) proteins are integral
membrane proteins, approximately 1,000 amino acids in
length. There are a number of highly conserved residues,
including several motifs shown to be necessary for
processive glycosyltransferase activity.
Length = 716
Score = 27.0 bits (60), Expect = 5.5
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 58 FSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFV-DKHRVKFAGEERTV 107
F++ W PFC K++N E + YF+ K ++ DK + F E R +
Sbjct: 58 FARKWVPFC---KKHNIEP---RAPEFYFSQKIDYLKDKVQPDFVKERRAM 102
>gnl|CDD|218901 pfam06110, DUF953, Eukaryotic protein of unknown function
(DUF953). This family consists of several hypothetical
eukaryotic proteins of unknown function.
Length = 119
Score = 26.3 bits (58), Expect = 6.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 60 KSWCPFCTKAKENNYE 75
+SWCP C +A+ E
Sbjct: 35 ESWCPDCVRAEPVIRE 50
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 26.5 bits (59), Expect = 6.8
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 95 KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDD 136
+ V G E+T +A I+A+G D G+ D
Sbjct: 360 RGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDK 401
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 26.1 bits (58), Expect = 8.7
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 102 GEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDD 136
G E + A + A+G PT P LGI +
Sbjct: 268 GSEFVLEADTVVFAIGEIPT-PPFAKECLGIELNR 301
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 26.1 bits (58), Expect = 8.7
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 75 EKELEKNKIDYFNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYPDIPG 127
+++ EK ++ + V+ F ++ T A+ IIA G +PG
Sbjct: 68 KEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLGVPG 122
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein.
Length = 1135
Score = 26.5 bits (59), Expect = 9.2
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 58 FSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFV-DKHRVKFAGEERTV 107
F++ W PFC K ++ E +N YF+ K +K R F + R V
Sbjct: 426 FARIWVPFCRK---HDIEP---RNPESYFSLKRDPTKNKVRPDFVKDRRRV 470
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,351,432
Number of extensions: 755048
Number of successful extensions: 801
Number of sequences better than 10.0: 1
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 103
Length of query: 164
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 74
Effective length of database: 6,945,742
Effective search space: 513984908
Effective search space used: 513984908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)