RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7674
(164 letters)
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 141 bits (359), Expect = 6e-41
Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGIT 133
++ +E+ I + A FVD H ++ G+ +SA + +IA GGRP P +PGA LGIT
Sbjct: 98 WDGYVERLGITRVDGHARFVDAHTIEVEGQ--RLSADHIVIATGGRPIVPRLPGAELGIT 155
Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
SD F+L + P +V ++GA YI +E AG
Sbjct: 156 SDGFFALQQQPKRVAIIGAGYIGIELAG 183
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 141 bits (357), Expect = 9e-41
Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGIT 133
YE L KN +D A FVD ++ GE T++A + +IA GGRP++PDIPG GI
Sbjct: 99 YENVLGKNNVDVIKGFARFVDAKTLEVNGE--TITADHILIATGGRPSHPDIPGVEYGID 156
Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
SD F+L P +V +VGA YI +E G
Sbjct: 157 SDGFFALPALPERVAVVGAGYIGVELGG 184
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 140 bits (356), Expect = 1e-40
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGAHLGI 132
Y K L + + +A + VK +TV+A+ +IAVGG P+ D +PG L I
Sbjct: 99 YRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCI 158
Query: 133 TSDDLFSLNKDPGKVLLVGASYIALECAG 161
TS++ F L P +L+ G YIA+E A
Sbjct: 159 TSNEAFDLPALPESILIAGGGYIAVEFAN 187
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 137 bits (348), Expect = 3e-39
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 3/91 (3%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAH-L 130
+L K++Y N FVD H K ERT++AQ F+IAVGGRP YPDIPGA
Sbjct: 114 TRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEY 173
Query: 131 GITSDDLFSLNKDPGKVLLVGASYIALECAG 161
GITSDDLFSL+++PGK L+VGA YI LECAG
Sbjct: 174 GITSDDLFSLDREPGKTLVVGAGYIGLECAG 204
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 137 bits (347), Expect = 3e-39
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTY-PDIPGAHLGI 132
Y + L+ + + + ++AVFVD+H ++ + +SA+ +IA G + I G+ L +
Sbjct: 120 YREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCL 179
Query: 133 TSDDLFSLNKDPGKVLLVGASYIALECAG 161
TS+++F L K P +++VG YI +E A
Sbjct: 180 TSNEIFDLEKLPKSIVIVGGGYIGVEFAN 208
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 136 bits (346), Expect = 5e-39
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHL 130
Y+ L K+ I+ A F + + +A + +IA GG P+ P IPGA L
Sbjct: 114 YQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASL 173
Query: 131 GITSDDLFSLNKDPGKVLLVGASYIALECAG 161
GITSD F L + PG+ ++VGA YIA+E AG
Sbjct: 174 GITSDGFFQLEELPGRSVIVGAGYIAVEMAG 204
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 136 bits (346), Expect = 6e-39
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPD-IPGAH 129
Y+K LEK K+D A F V+ SA + ++A GG+ +P+ IPG
Sbjct: 111 YQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFE 170
Query: 130 LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
LG SD F L + P KV++VGA YI +E AG
Sbjct: 171 LGTDSDGFFRLEEQPKKVVVVGAGYIGIELAG 202
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 136 bits (344), Expect = 1e-38
Identities = 47/92 (51%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAH- 129
Y L + K+ Y NA F+ HR+K G+E+ SA+ F+IA G RP Y IPG
Sbjct: 136 YRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKE 195
Query: 130 LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
I+SDDLFSL PGK L+VGASY+ALECAG
Sbjct: 196 YCISSDDLFSLPYCPGKTLVVGASYVALECAG 227
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 134 bits (339), Expect = 6e-38
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 74 YEKEL-EKNKIDYFNAKAVFVDKHRVK-------FAGEERTVSAQNFIIAVGGRPTYPDI 125
YE + +D+F K+ V + + + A + ++A G P P I
Sbjct: 113 YEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAI 172
Query: 126 PGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
PG I+S++ F L + P +VL VG +I++E AG
Sbjct: 173 PGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAG 208
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 133 bits (338), Expect = 8e-38
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 74 YEKEL-EKNKIDYFNAKAVFVDKHRV-------KFAGEERTVSAQNFIIAVGGRPTYPDI 125
YE + + + D H V + T+ + ++A G P + I
Sbjct: 109 YEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGI 168
Query: 126 PGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
G L ITS++ F L++ P + L VG YI++E AG
Sbjct: 169 EGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAG 204
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 134 bits (340), Expect = 1e-37
Identities = 45/92 (48%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGE---ERTVSAQNFIIAVGGRPTYPDIPGAH- 129
Y+ L N++ Y NAK + H V+ + T++ I+A G RP YP+IPGA
Sbjct: 212 YKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVE 271
Query: 130 LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
GITSDDLFSL PGK L++GASY+ALECAG
Sbjct: 272 YGITSDDLFSLPYFPGKTLVIGASYVALECAG 303
Score = 46.6 bits (111), Expect = 8e-07
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 13 FQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
+ELD+L NG+ IQ L + +TVP +F+ GK I
Sbjct: 45 HATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFI 82
Score = 38.1 bits (89), Expect = 7e-04
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 48 KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKID 84
K +D+ +V++FSK+ CP+C K K+ E +++ I+
Sbjct: 13 KTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIE 49
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 132 bits (335), Expect = 2e-37
Identities = 48/93 (51%), Positives = 64/93 (68%), Gaps = 5/93 (5%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYP-DIPGAH 129
+ +L+ K+ YFN KA FVD+H V+ G+ +SA++ +IA GGRP YP + GA
Sbjct: 110 HRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGAL 169
Query: 130 -LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
GITSDD+F L + PGK L+VGASY+ALECAG
Sbjct: 170 EYGITSDDIFWLKESPGKTLVVGASYVALECAG 202
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 123 bits (312), Expect = 4e-34
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAG------------EERTVSAQNFIIAVGGRPT 121
Y + L K+K+D + A F+ ++R+ G E + +N +IAVG +P
Sbjct: 95 YRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV 154
Query: 122 YPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
+P + G I+SD+ F++ K+ K+ +VG+ YIA+E
Sbjct: 155 FPPVKGIENTISSDEFFNI-KESKKIGIVGSGYIAVELIN 193
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 77.3 bits (191), Expect = 2e-17
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGIT 133
++ + + N N A +D H V+ AG+ A+N I+AVG P D+PG +
Sbjct: 142 FQSKEQLNLEYILNCPAKVIDNHTVEAAGK--VFKAKNLILAVGAGPGTLDVPGVNAKGV 199
Query: 134 SDD---LFSLNKDPGKVLLV-GASYIALECAG 161
D + L+ +PG ++V G S A+E
Sbjct: 200 FDHATLVEELDYEPGSTVVVVGGSKTAVEYGC 231
Score = 28.0 bits (63), Expect = 1.6
Identities = 5/71 (7%), Positives = 19/71 (26%), Gaps = 10/71 (14%)
Query: 75 EKELEKNKID-YFNAKAVFVDK--------HRVKFAGEERTVSAQNFIIAVGGRPTYPDI 125
+++ ++ + +++ E + + +G +P
Sbjct: 262 LDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQP-RSAE 320
Query: 126 PGAHLGITSDD 136
LG+
Sbjct: 321 LAKILGLDLGP 331
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 77.2 bits (191), Expect = 2e-17
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 74 YEKELEK-NKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAH 129
YE L I + +A F D + G ER V ++A G P P IPG
Sbjct: 100 YEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLK 159
Query: 130 LG--ITSDDLFSLNKDPGKVLLVGASYIALECA 160
TS + + + P ++ ++G+S +ALE A
Sbjct: 160 ESPYWTSTEALASDTIPERLAVIGSSVVALELA 192
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB:
2fls_A*
Length = 146
Score = 67.5 bits (165), Expect = 4e-15
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
N++VVELD L G Q Q AL++ TG++TVP IF++G I
Sbjct: 75 NYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFI 113
Score = 57.8 bits (140), Expect = 2e-11
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 48 KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
+ I +N VVIFSK+ C +CT AK+ ++Y K V +D G +
Sbjct: 44 ETISDNCVVIFSKTSCSYCTMAKK-----LFHDMNVNY---KVVELDLLE---YGNQF-- 90
Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK 146
Q+ + + G T P + G +G + D L+K+ GK
Sbjct: 91 --QDALYKMTGERTVPRIFVNGTFIG-GATDTHRLHKE-GK 127
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion,
redox-activ transit peptide, transport, oxidoreductase;
1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A
3d5j_A*
Length = 129
Score = 66.6 bits (163), Expect = 5e-15
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 9 PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
P V+ELD++ NG++IQ AL E +GQKTVPN++I+GKHI
Sbjct: 64 PKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHI 105
Score = 57.8 bits (140), Expect = 1e-11
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 48 KHIDNNSVVIFSKSWCPFCTKAKENNYEKEL-EKNKIDYFNAKAVFVDKHRVKFAGEERT 106
I V + +K++CP+C L ++ + A + +D+ G E
Sbjct: 32 DLIGQKEVFVAAKTYCPYCKATL-----STLFQELNVPKSKALVLELDEMS---NGSEI- 82
Query: 107 VSAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK 146
Q+ + + G+ T P+ I G H+G + DL +L K+ GK
Sbjct: 83 ---QDALEEISGQKTVPNVYINGKHIG-GNSDLETLKKN-GK 119
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 69.5 bits (171), Expect = 9e-15
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 78 LEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG----IT 133
+KN I A F+ + +V + A+ +IA G P P A + +T
Sbjct: 99 FKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPL--IPPWAQVDYERVVT 156
Query: 134 SDDLFSLNKDPGKVLLVGASYIALE 158
S + S + P ++++VG I LE
Sbjct: 157 STEALSFPEVPKRLIVVGGGVIGLE 181
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 65.8 bits (161), Expect = 1e-14
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
N++VVELD L G Q Q AL++ TG++TVP IF++G I
Sbjct: 53 NYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFI 91
Score = 56.6 bits (137), Expect = 3e-11
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 48 KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
+ I +N VVIFSK+ C +CT AK+ ++Y K V +D G +
Sbjct: 22 ETISDNCVVIFSKTSCSYCTMAKK-----LFHDMNVNY---KVVELDLLEY---GNQF-- 68
Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK 146
Q+ + + G T P + G +G + D L+K+ GK
Sbjct: 69 --QDALYKMTGERTVPRIFVNGTFIG-GATDTHRLHKE-GK 105
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics,
structural genomics CON SGC, developmental protein,
differentiation; 2.21A {Homo sapiens}
Length = 114
Score = 64.9 bits (159), Expect = 1e-14
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
V+ELD++ +GA++Q L E T QKTVPNIF++ H+
Sbjct: 43 ECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHV 81
Score = 54.5 bits (132), Expect = 1e-10
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 19/99 (19%)
Query: 50 IDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSA 109
I+ + VVIFSKS+CP T+ K + ++ + +D+ G
Sbjct: 14 IERSRVVIFSKSYCPHSTRVK-----ELFSSLGVEC---NVLELDQVD---DGARV---- 58
Query: 110 QNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK 146
Q + + + T P+ + H+G D F + G
Sbjct: 59 QEVLSEITNQKTVPNIFVNKVHVG-GCDQTFQAYQS-GL 95
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 68.7 bits (169), Expect = 2e-14
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 80 KNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDD 136
+ ++ D V G+E + IIA G +PG +TSDD
Sbjct: 101 YETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDD 160
Query: 137 ----LFSLNKDPGKVLLVGASYIALE 158
S K P ++++GA YI LE
Sbjct: 161 IFGYKTSFRKLPQDMVIIGAGYIGLE 186
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 65.0 bits (159), Expect = 2e-14
Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
+++VVELD+L +G+Q+Q+AL TG+ TVPN+FI GK I
Sbjct: 46 SYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQI 84
Score = 55.0 bits (133), Expect = 1e-10
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 48 KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
+ + VV+FSK++C +C + K+ L + Y K V +D+ G +
Sbjct: 15 ELASSAPVVVFSKTYCGYCNRVKQ-----LLTQVGASY---KVVELDELS---DGSQL-- 61
Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKD 143
Q+ + GR T P+ I G +G D + ++
Sbjct: 62 --QSALAHWTGRGTVPNVFIGGKQIG-GCDTVVEKHQR 96
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm,
electron transport, redox-active center, transport;
HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A*
2jac_A*
Length = 118
Score = 64.7 bits (158), Expect = 2e-14
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 9 PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
P V++L+ + GA IQ AL+E GQ+TVPNI+I+GKHI
Sbjct: 52 PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHI 93
Score = 60.0 bits (146), Expect = 1e-12
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Query: 48 KHIDNNSVVIFSKSWCPFCTKAKENNYEKEL-EKNKIDYFNAKAVFVDKHRVKFAGEERT 106
I N + + SK++CP+C A L EK K+ + ++ + G +
Sbjct: 20 DLIAENEIFVASKTYCPYCHAAL-----NTLFEKLKVPRSKVLVLQLNDMK---EGADI- 70
Query: 107 VSAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK--VLL--VGAS 153
Q + + G+ T P+ I G H+G +DDL L + G+ LL + A+
Sbjct: 71 ---QAALYEINGQRTVPNIYINGKHIG-GNDDLQELRET-GELEELLEPILAN 118
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite.,
electron trans oxidoreductase; 1.80A {Ectromelia virus}
PDB: 2hzf_A 2hze_B
Length = 114
Score = 64.6 bits (158), Expect = 2e-14
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
+++V++ + +++ + TG KTVP IF I
Sbjct: 48 AYEIVDIKEFKPENELRDYFEQITGGKTVPRIFFGKTSI 86
Score = 56.5 bits (137), Expect = 2e-11
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 16/101 (15%)
Query: 48 KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
+ + NN V IF K CPFC A L K + V + + + E
Sbjct: 14 QRLANNKVTIFVKYTCPFCRNAL-----DILNKFSFKRGAYEIVDIKEFK---PENEL-- 63
Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK 146
+++ + G T P +G DL ++
Sbjct: 64 --RDYFEQITGGKTVPRIFFGKTSIG-GYSDLLEIDNM-DA 100
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron
transport, redox- active center, yeast, GRX1P,
transport; HET: PIA; 2.7A {Aequorea victoria}
Length = 362
Score = 67.1 bits (163), Expect = 7e-14
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 9 PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
P V++L+ + GA IQ AL+E GQ+TVPNI+I+GKHI
Sbjct: 288 PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHI 329
Score = 38.9 bits (90), Expect = 3e-04
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 48 KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
I N + + SK++CP+ A EK K+ + ++ + G +
Sbjct: 256 DLIAENEIFVASKTYCPYSHAAL----NTLFEKLKVPRSKVLVLQLNDMK---EGADI-- 306
Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKD 143
Q + + G+ T P+ I G H+G +DDL L +
Sbjct: 307 --QAALYEINGQRTVPNIYINGKHIG-GNDDLQELRET 341
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 66.8 bits (164), Expect = 9e-14
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 78 LEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
++KNKI + F D + + G +V+ N IIA G +PG L
Sbjct: 101 MKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTR--LVPGTSLSANV 158
Query: 132 ITSDDLFSLNKDPGKVLLVGASYIALE 158
+T ++ + P +++ GA I +E
Sbjct: 159 VTYEEQILSRELPKSIIIAGAGAIGME 185
Score = 26.3 bits (59), Expect = 5.7
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 75 EKELEKNKID-YFNAKAVFVDKH------RVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 127
EK+ +K + K + V G + + A+ + A+G P
Sbjct: 219 EKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGL 278
Query: 128 AHLGITSDD 136
G+ D
Sbjct: 279 DKAGVALTD 287
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 66.4 bits (163), Expect = 1e-13
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 78 LEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
+KNKID F + + +V GEE+ + A+N +IA G IPG +
Sbjct: 125 FKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA--GIPGVEVAFDE 182
Query: 132 ---ITSDDLFSLNKDPGKVLLVGASYIALE 158
++S +L K P +++VG I LE
Sbjct: 183 KTIVSSTGALALEKVPASMIVVGGGVIGLE 212
Score = 26.0 bits (58), Expect = 7.6
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 69 AKENNYEKELEKNKID-YFNAKAVFVDKH----RVKF----AGEERTVSAQNFIIAVGGR 119
AK+ ++ L K ID AK K +V F GE T+ A+ +IA G +
Sbjct: 242 AKQ--LQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRK 299
Query: 120 PTYPDIPGAHLGITSDD 136
P+ + A G+ D
Sbjct: 300 PSTDGLGLAKAGVVLDS 316
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 66.0 bits (162), Expect = 1e-13
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 78 LEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
++ N + F + +V+ G + + +N I+A G +P +IP A +
Sbjct: 109 IKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPV--EIPPAPVDQDV 166
Query: 132 -ITSDDLFSLNKDPGKVLLVGASYIALE 158
+ S PGK+ ++GA I LE
Sbjct: 167 IVDSTGALDFQNVPGKLGVIGAGVIGLE 194
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 66.0 bits (162), Expect = 1e-13
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 78 LEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
+KNK+ Y FV + GE V ++ IIA G +PG +
Sbjct: 106 FKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVK--SLPGVTIDEKK 163
Query: 132 -ITSDDLFSLNKDPGKVLLVGASYIALE 158
++S +L++ P K++++GA YI LE
Sbjct: 164 IVSSTGALALSEIPKKLVVIGAGYIGLE 191
Score = 26.7 bits (60), Expect = 4.6
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 69 AKENNYEKELEKNKID-YFNAKAVFVDKH----RVKF----AGEERTVSAQNFIIAVGGR 119
K+ +++ LEK + K V VD ++ GE+ + A +++ G
Sbjct: 221 RKQ--FQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRT 278
Query: 120 PTYPDIPGAHLGITSDD 136
P + +G+ +D
Sbjct: 279 PFTSGLNLDKIGVETDK 295
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold,
thiol-disulfide oxidoreductase, glutaredox
oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana}
PDB: 3rhc_A* 3fz9_A* 3fza_A*
Length = 113
Score = 62.3 bits (152), Expect = 1e-13
Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 12 NFQVVELDKL-PNGAQIQTALFERTGQKTVPNIFIHGKHI 50
VVELD+L P G Q+Q L TGQ TVPN+F+ GKHI
Sbjct: 45 QPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHI 84
Score = 56.1 bits (136), Expect = 3e-11
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 48 KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
K + N+VVI+SK+WC +CT+ K + + V+ ++ G +
Sbjct: 14 KTVTENTVVIYSKTWCSYCTEVKTLFKRL----------GVQPLVVELDQLGPQGPQL-- 61
Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK 146
Q + + G+ T P+ + G H+G D LN+ G
Sbjct: 62 --QKVLERLTGQHTVPNVFVCGKHIG-GCTDTVKLNRK-GD 98
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 62.2 bits (152), Expect = 2e-13
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 9 PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
+ + V++ + +IQ L + TG +TVP +FI + I
Sbjct: 38 KEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECI 79
Score = 55.7 bits (135), Expect = 4e-11
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 15/98 (15%)
Query: 48 KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
I VV+F K CPFC K +EL F + E
Sbjct: 7 SKIQPGKVVVFIKPTCPFCRKT------QELLSQL--PFKEGLLEFVDITATSDTNEI-- 56
Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKD 143
Q+++ + G T P I +G DL S++K
Sbjct: 57 --QDYLQQLTGARTVPRVFIGKECIG-GCTDLESMHKR 91
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 66.0 bits (162), Expect = 2e-13
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 78 LEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG---ITS 134
L+K+ + + A +D +V+ G+ + ++ ++A G ++P LG I+S
Sbjct: 106 LKKHGVKVVHGWAKVLDGKQVEVDGQ--RIQCEHLLLATGSSSV--ELPMLPLGGPVISS 161
Query: 135 DDLFSLNKDPGKVLLVGASYIALE 158
+ + P +++VG YI LE
Sbjct: 162 TEALAPKALPQHLVVVGGGYIGLE 185
Score = 27.9 bits (63), Expect = 1.8
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKID-YFNAKAVFVDKH-RVKFA--GEERTVSA 109
SVV + P + L+K I + + + G + + A
Sbjct: 198 SVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEA 257
Query: 110 QNFIIAVGGRPTYPDIPGAHLGITSDD 136
++AVG RP L + +
Sbjct: 258 DRVLVAVGRRPRTKGFNLECLDLKMNG 284
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GSH; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 62.4 bits (152), Expect = 2e-13
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
N+ ++ELDK +G ++Q + TG+ TVPN+ ++G
Sbjct: 43 NYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNGVSR 81
Score = 55.9 bits (135), Expect = 6e-11
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 50 IDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSA 109
+D + ++IFSKS C + KE LE N + +DKH GEE
Sbjct: 11 LDLSPIIIFSKSTCSYSKGMKE-----LLENEYQFIPNYYIIELDKHG---HGEEL---- 58
Query: 110 QNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKD 143
Q +I V GR T P+ + G G ++++ L+
Sbjct: 59 QEYIKLVTGRGTVPNLLVNGVSRG-GNEEIKKLHTQ 93
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 65.2 bits (160), Expect = 3e-13
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 78 LEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
+KNK+ Y+ + F H ++ G++ + + IIA G PT ++P
Sbjct: 103 FKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPT--ELPFLPFDEKV 160
Query: 132 -ITSDDLFSLNKDPGKVLLVGASYIALE 158
++S +L + P ++++G I LE
Sbjct: 161 VLSSTGALALPRVPKTMVVIGGGVIGLE 188
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 65.2 bits (160), Expect = 3e-13
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 80 KNKIDYFNAKAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG---ITS 134
NK++ +A FVD + RV +T + +N IIA G RP ++P + S
Sbjct: 103 GNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPI--ELPNFKFSNRILDS 160
Query: 135 DDLFSLNKDPGKVLLVGASYIALE 158
+L + P ++++G YI +E
Sbjct: 161 TGALNLGEVPKSLVVIGGGYIGIE 184
Score = 27.9 bits (63), Expect = 1.7
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKID-YFNAKAVFVDKH----RVKF--AGEERT 106
+++ + K +K L+K ++ NA A ++ V + GE +T
Sbjct: 197 TILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKT 256
Query: 107 VSAQNFIIAVGGRPTYPDIPGAHLGITSDD 136
+ A ++ VG RP ++ +GI +
Sbjct: 257 IDADYVLVTVGRRPNTDELGLEQIGIKMTN 286
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 64.8 bits (159), Expect = 4e-13
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 80 KNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG----I 132
+NK+ + N K++V G + + +N +IA G T PG + +
Sbjct: 109 QNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVT--PFPGITIDEDTIV 166
Query: 133 TSDDLFSLNKDPGKVLLVGASYIALE 158
+S SL K P K++++GA I +E
Sbjct: 167 SSTGALSLKKVPEKMVVIGAGVIGVE 192
Score = 25.5 bits (57), Expect = 9.3
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 72 NNYEKELEKNKID-YFNAKAVFVDKH-----RVKF----AGEERTVSAQNFIIAVGGRPT 121
N+++ L+K N K K V G+ ++ ++ +G RP
Sbjct: 224 KNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPF 283
Query: 122 YPDIPGAHLGITSDD 136
++ LGI D
Sbjct: 284 TKNLGLEELGIELDP 298
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 63.4 bits (155), Expect = 1e-12
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 80 KNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG----ITSD 135
++ D A F+D+H ++ + V A+ +IA G RP +T+D
Sbjct: 109 FDEQDKIRGFAKFLDEHTLQ-VDDHSQVIAKRIVIATGSRPN--YPEFLAAAGSRLLTND 165
Query: 136 DLFSLNKDPGKVLLVGASYIALE 158
+LF LN P V + G I LE
Sbjct: 166 NLFELNDLPKSVAVFGPGVIGLE 188
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 62.5 bits (153), Expect = 2e-12
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 80 KNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG---ITSDD 136
N ++ A V V+ GE A++ I+A G P ++ G G S
Sbjct: 105 GNGVELLRGFARLVGPKEVEVGGE--RYGAKSLILATGSEPL--ELKGFPFGEDVWDSTR 160
Query: 137 LFSLNKD-PGKVLLVGASYIALE 158
+ + P ++L++G + LE
Sbjct: 161 ALKVEEGLPKRLLVIGGGAVGLE 183
Score = 27.1 bits (61), Expect = 2.7
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKID-YFNAKAVFVDKH----RVKF----AGEE 104
+++ + P + LEK I KAV +K V+ GE
Sbjct: 196 TLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEG 255
Query: 105 RTVSAQNFIIAVGGRPTYPDIPGAHLGITSDD 136
V ++AVG +P + G+ D+
Sbjct: 256 EEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDE 287
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 62.6 bits (153), Expect = 3e-12
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 78 LEKNKIDYFNAKAVFVD------KHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 128
L + + +D +HR+K G A ++A G P +P A
Sbjct: 105 LLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPR--ILPSA 162
Query: 129 HLG----ITSDDLFSLNKDPGKVLLVGASYIALE 158
+T L+ L+ P +++VG+ E
Sbjct: 163 QPDGERILTWRQLYDLDALPDHLIVVGSGVTGAE 196
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 61.4 bits (150), Expect = 6e-12
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 78 LEKNKIDYFNAKAVFVDKHRVKFAGEE---------RTVSAQNFIIAVGGRPTYPDIPGA 128
+KNK+ Y+ F D+ +++ + + +N I+A G T PG
Sbjct: 106 FKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT--PFPGI 163
Query: 129 HLG----ITSDDLFSLNKDPGKVLLVGASYIALE 158
+ ++S SL + P ++ ++G I LE
Sbjct: 164 EIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLE 197
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 60.2 bits (147), Expect = 1e-11
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 80 KNKIDYFNAKAVFVDKHRVK-------------FAGEERTVSAQNFIIAVGGRPTYPDIP 126
K+D F+D H ++ GE++ V+ +N IIA G R T +P
Sbjct: 107 SRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT--KLP 164
Query: 127 GAHLG---ITSDDLFSLNKDPGKVLLVGASYIALE 158
I S +L + PGK+L++G I LE
Sbjct: 165 FIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLE 199
Score = 26.7 bits (60), Expect = 3.7
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 8/91 (8%)
Query: 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKID-YFNAKAVFVDKH----RVKFA---GEER 105
VV + ++K+ E + N K V V+ V F +
Sbjct: 212 DVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKE 271
Query: 106 TVSAQNFIIAVGGRPTYPDIPGAHLGITSDD 136
++A G P I G+ D
Sbjct: 272 PQRYDAVLVAAGRAPNGKLISAEKAGVAVTD 302
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A
{Synechocystis SP}
Length = 99
Score = 50.3 bits (121), Expect = 4e-09
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 53 NSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNF 112
+ I++ S CPFC +A L++ +++ ++ + E R +
Sbjct: 16 AKIEIYTWSTCPFCMRAL-----ALLKRKGVEF--------QEYCIDGDNEAR----EAM 58
Query: 113 IIAVGGRPTYPDI--PGAHLGITSDDLFSLNKDPGK 146
G+ + P I H+G DD+++L+ GK
Sbjct: 59 AARANGKRSLPQIFIDDQHIG-GCDDIYALDGA-GK 92
Score = 43.8 bits (104), Expect = 1e-06
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
FQ +D + + G++++P IFI +HI
Sbjct: 42 EFQEYCIDG--DNEAREAMAARANGKRSLPQIFIDDQHI 78
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Brucella melitensis}
Length = 92
Score = 48.7 bits (117), Expect = 1e-08
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
F ++ +++ + ER+G+ T P IFI H+
Sbjct: 32 EFNEIDAS---ATPELRAEMQERSGRNTFPQIFIGSVHV 67
Score = 44.1 bits (105), Expect = 7e-07
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 24/95 (25%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAG-EERTVSAQNFI 113
V+I+++ CP+C +AK L + ++ + A +ER+
Sbjct: 8 VIIYTRPGCPYCARAK-----ALLARKGAEF---NEIDASATPELRAEMQERS------- 52
Query: 114 IAVGGRPTYPDI--PGAHLGITSDDLFSLNKDPGK 146
GR T+P I H+G DDL++L + GK
Sbjct: 53 ----GRNTFPQIFIGSVHVG-GCDDLYALEDE-GK 81
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 47.0 bits (112), Expect = 7e-08
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 46 HGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEER 105
H +D V+++ S C +C K K K L +D+ V+VD+ G+E
Sbjct: 15 HVSGVDRGKVIMYGLSTCVWCKKTK-----KLLTDLGVDF---DYVYVDRLE----GKEE 62
Query: 106 TVSAQNFIIAVGGRPTYPDI 125
A + ++P
Sbjct: 63 E-EAVEEVRRFNPSVSFPTT 81
Score = 34.3 bits (79), Expect = 0.003
Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 13 FQVVELDKLPN--GAQIQTALFERTGQKTVPNIFIHGKHI 50
F V +D+L + + + P I+ +
Sbjct: 49 FDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKA 88
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron
transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB:
3grx_A*
Length = 82
Score = 46.4 bits (111), Expect = 8e-08
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
+FQ + +D A + + +R+G+ TVP IFI +HI
Sbjct: 27 SFQELPID---GNAAKREEMIKRSGRTTVPQIFIDAQHI 62
Score = 44.4 bits (106), Expect = 4e-07
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFI 113
+V I++K CP+C +AK L + + + + +R +
Sbjct: 2 NVEIYTKETCPYCHRAK-----ALLSSKGVSF--------QELPIDGNAAKREE-----M 43
Query: 114 IAVGGRPTYPDI--PGAHLGITSDDLFSLNKDPGK 146
I GR T P I H+G DDL++L+ G
Sbjct: 44 IKRSGRTTVPQIFIDAQHIG-GYDDLYALDAR-GG 76
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 48.6 bits (117), Expect = 2e-07
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 75 EKELEKNKID-YFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL- 130
E ++K ID + NA+ + VD RV+ G E++ + A G P P I G +L
Sbjct: 66 EVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLK 125
Query: 131 GI----TSDDLFSL-----NKDPGKVLLVGASYIALECA 160
G+ D ++ V+++G YI +E A
Sbjct: 126 GVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMA 164
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Bartonella henselae}
Length = 89
Score = 45.6 bits (109), Expect = 2e-07
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 23/96 (23%)
Query: 53 NSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNF 112
++++++ CP+C +A+ L+K + Y + R Q
Sbjct: 6 KEIILYTRPNCPYCKRAR-----DLLDKKGVKY---TDIDAS-------TSLR----QEM 46
Query: 113 IIAVGGRPTYPDI--PGAHLGITSDDLFSLNKDPGK 146
+ GR T+P I H+G DDL++L GK
Sbjct: 47 VQRANGRNTFPQIFIGDYHVG-GCDDLYALENK-GK 80
Score = 44.1 bits (105), Expect = 7e-07
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
+ ++ + Q + G+ T P IFI H+
Sbjct: 32 KYTDIDAS----TSLRQEMVQRANGRNTFPQIFIGDYHV 66
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 44.9 bits (107), Expect = 3e-07
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 16/92 (17%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
VIF +S CP+C +AK+ + E++ Y ++ G + ++
Sbjct: 3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQY--------QYVDIRAEGITK----EDLQQ 50
Query: 115 AVGGRP-TYPDI--PGAHLGITSDDLFSLNKD 143
G T P I H+G D + K+
Sbjct: 51 KAGKPVETVPQIFVDQQHIG-GYTDFAAWVKE 81
Score = 38.8 bits (91), Expect = 6e-05
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQ--KTVPNIFIHGKHI 50
+FQ +D G + L ++ G+ +TVP IF+ +HI
Sbjct: 30 DFQYQYVDIRAEGITKE-DLQQKAGKPVETVPQIFVDQQHI 69
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics
of infec diseases, csgid, oxidoreductase; HET: GSH;
2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Length = 89
Score = 45.0 bits (107), Expect = 3e-07
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
V I++++ CP+C AK + E+N I + +D + +
Sbjct: 6 VKIYTRNGCPYCVWAK-----QWFEENNIAF---DETIIDDY---AQRSKFYDEMNQSGK 54
Query: 115 AVGGRPTYPDI--PGAHLGITSDDLFSLNK 142
+ T P I H+G +L +
Sbjct: 55 VIFPISTVPQIFIDDEHIG-GFTELKANAD 83
Score = 33.8 bits (78), Expect = 0.005
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 12 NFQVVELDKLPNGAQ----IQTALFERTGQKTVPNIFIHGKHI 50
F +D ++ + + TVP IFI +HI
Sbjct: 30 AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDEHI 72
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 46.4 bits (111), Expect = 8e-07
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 75 EKELEKNKIDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-G 131
EK + I+ + + V +D ++ A + + ++A G R D+P A L
Sbjct: 64 EKFFQDQAIELISDRMVSIDREGRKLLLASG-TAIEYGHLVLATGARNRMLDVPNASLPD 122
Query: 132 I----TSDD---LFSLNKDPGKVLLVGASYIALECA 160
+ T D+ L D V+++GA +I LE A
Sbjct: 123 VLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFA 158
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 45.4 bits (108), Expect = 2e-06
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 113 IIAVGGRPTYPDIPGAHLG--ITSDDLFSLNKDPGK-VLLVGASYIALECA 160
I+A G P P I G ++ D+ G V ++G I + A
Sbjct: 460 ILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTA 510
Score = 25.7 bits (57), Expect = 9.6
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 76 KELEKNKID-YFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRP 120
L + +D + GE + ++ N +I G P
Sbjct: 581 TTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEP 628
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 44.0 bits (105), Expect = 7e-06
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 12/87 (13%)
Query: 82 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-GITS------ 134
+D K + V + EE+T + I+ G +PT P IPG +
Sbjct: 83 NVD-PETKTIKV---KDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYND 138
Query: 135 -DDLFSLNKDPGKVLLVGASYIALECA 160
LF + ++G+ YI E A
Sbjct: 139 AKKLFEEAPKAKTITIIGSGYIGAELA 165
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein
structure initiative, midwest center for structural
genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Length = 92
Score = 41.5 bits (98), Expect = 8e-06
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
V+++ S CP C + + L++ +D+ + + E +
Sbjct: 14 VLMYGLSTCPHCKRTL-----EFLKREGVDF--------EVIWIDKLEGEERKKVIEKVH 60
Query: 115 AVGGRPTYP--DIPGAHLG 131
++ G + P H+
Sbjct: 61 SISGSYSVPVVVKGDKHVL 79
Score = 33.0 bits (76), Expect = 0.010
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 12 NFQVVELDKLPNGAQIQTA--LFERTGQKTVPNIFIHGKHI 50
+F+V+ +DKL + + + +G +VP + KH+
Sbjct: 38 DFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHV 78
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 42.6 bits (101), Expect = 2e-05
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 75 EKELEKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL- 130
+ +ID + +D + T+SA +IA G R +PG+ L
Sbjct: 64 ADWYGEARIDMLTGPEVTALDVQTRTISLDDG-TTLSADAIVIATGSRARTMALPGSQLP 122
Query: 131 GI----TSDD---LFSLNKDPGKVLLVGASYIALECA 160
G+ T D L ++L+VG I E A
Sbjct: 123 GVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVA 159
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 42.5 bits (101), Expect = 2e-05
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 82 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-GI----TSDD 136
K+D K V+ + + + S +IA G RP P+ G L G+ T D
Sbjct: 118 KVD-TEKKIVYAEHTK---TKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPD 173
Query: 137 LFSL-----NKDPGKVLLVGASYIALECA 160
+ V ++G I LE A
Sbjct: 174 AERILKTLETNKVEDVTIIGGGAIGLEMA 202
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 42.1 bits (100), Expect = 2e-05
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 82 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-GI----TSDD 136
I V V +GEER + II+ G P DIPG L I
Sbjct: 81 AIQ-PKEHQVTVKDLV---SGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQW 136
Query: 137 LFSL-----NKDPGKVLLVGASYIALECA 160
L + + V+++G+ YI +E A
Sbjct: 137 AIKLKQKTVDPEVNNVVVIGSGYIGIEAA 165
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 42.1 bits (100), Expect = 2e-05
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 13/97 (13%)
Query: 77 ELEKNKID-YFNAKAVFVDKHR----VKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL- 130
EL + KI N + V +D E++ S I+A G I G+
Sbjct: 67 ELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTE 126
Query: 131 GITS-------DDLFSLNKDPGKVLLVGASYIALECA 160
+ L ++ V ++GA I +E
Sbjct: 127 KLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAI 163
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 42.1 bits (100), Expect = 3e-05
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 82 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-GI----TSDD 136
ID A V + GE RT+ ++A+G + P + G L G+ D+
Sbjct: 91 AID-RAAHTVEI---ENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDE 146
Query: 137 LFSL-----NKDPGKVLLVGASYIALECA 160
+ + K ++VG +I LE A
Sbjct: 147 AEFVQHAISAGEVSKAVIVGGGFIGLEMA 175
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 42.2 bits (100), Expect = 3e-05
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 14/89 (15%)
Query: 82 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-GI----TSDD 136
ID AK V V R G E S +++ G P P IPG D
Sbjct: 83 AID-RAAKLVTV---RRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPD 138
Query: 137 LFSL-----NKDPGKVLLVGASYIALECA 160
+ + + +VG +I LE
Sbjct: 139 MDRILQTIQMNNVEHATVVGGGFIGLEMM 167
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 42.2 bits (100), Expect = 3e-05
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 75 EKELEKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL- 130
+ E ++ A+ V +D H VK + I A GG P GA L
Sbjct: 72 AQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGS-AIEYGKLIWATGGDPRRLSCVGADLA 130
Query: 131 GI----TSDD----LFSLNKDPGKVLLVGASYIALECA 160
G+ T +D + L+ +++G YI LE A
Sbjct: 131 GVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAA 168
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 41.4 bits (98), Expect = 4e-05
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 23/101 (22%)
Query: 75 EKELEKNKID-YFNAKAVFVDKHRVKFAGEERTVSAQNF-------IIAVGGRPTYPDIP 126
K I+ +A +D+ + V + ++A G R P I
Sbjct: 67 LDWYRKRGIEIRLAEEAKLIDR-------GRKVVITEKGEVPYDTLVLATGARAREPQIK 119
Query: 127 GAHLGI----TSDDLFSLN---KDPGKVLLVGASYIALECA 160
G + T D + ++ G+ +++G +I LE A
Sbjct: 120 GKE-YLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELA 159
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 38.8 bits (91), Expect = 5e-05
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85
S+ +++K C CT K K L++ + Y
Sbjct: 2 SITLYTKPACVQCTATK-----KALDRAGLAY 28
Score = 29.5 bits (67), Expect = 0.12
Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 4/39 (10%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
+ V++ G P + + G+H
Sbjct: 27 AYNTVDISLDDEARD----YVMALGYVQAPVVEVDGEHW 61
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 41.4 bits (98), Expect = 5e-05
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 26/111 (23%)
Query: 76 KELEKNKID-YFNAKAVFVDKH----RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAH- 129
+ELE Y + +D G+ + I A G +P P I GA
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 130 ------LGITSDDLFSL--------------NKDPGKVLLVGASYIALECA 160
T ++L + NKD +V +VGA YI +E A
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELA 210
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 40.7 bits (96), Expect = 8e-05
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 21/93 (22%)
Query: 82 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSL- 140
KI+ K + + E + I++ G +P P IPG + LF+L
Sbjct: 118 KIN-KEEKTITIKNVT---TNETYNEAYDVLILSPGAKPIVPSIPGIE---EAKALFTLR 170
Query: 141 -------------NKDPGKVLLVGASYIALECA 160
K P ++G +I +E
Sbjct: 171 NVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMV 203
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 40.7 bits (96), Expect = 8e-05
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 24/98 (24%)
Query: 79 EKNKID-YFNAKAVFVDKHRVKFAGEERTVSAQN--------FIIAVGGRPTYPDIPGAH 129
EKN I + A +D + V+ ++ IIA G +P A
Sbjct: 73 EKNNIKVITSEFATSIDP-------NNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHAD 125
Query: 130 LGI----TSDDLFSLN---KDPGKVLLVGASYIALECA 160
I + DD + K+ GK ++G + +E A
Sbjct: 126 -EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELA 162
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 40.3 bits (95), Expect = 1e-04
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 15/100 (15%)
Query: 75 EKELEKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG 131
I + ++ + +V + + ++A GGRP + +G
Sbjct: 67 PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGR-ALDYDRLVLATGGRPRPLPVASGAVG 125
Query: 132 I--------TSDDLFSLNKD--PGK-VLLVGASYIALECA 160
T +D + + ++++G YI LE A
Sbjct: 126 KANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVA 165
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 37.7 bits (88), Expect = 2e-04
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85
+ I++++ C C K + +E D+
Sbjct: 2 RITIYTRNDCVQCHATK-----RAMENRGFDF 28
Score = 26.9 bits (60), Expect = 1.1
Identities = 6/38 (15%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 13 FQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
F+++ +D++P A+ G + +P +
Sbjct: 28 FEMINVDRVPEAAE----ALRAQGFRQLPVVIAGDLSW 61
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 39.1 bits (92), Expect = 3e-04
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 79 EKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-GI-- 132
++++ A D H V + T+ ++A G P +
Sbjct: 70 RAPEVEWLLGVTAQSFDPQAHTVALSDGR-TLPYGTLVLATGAAPRALPTLQGATMPVHT 128
Query: 133 --TSDDLFSLNKD--PGK-VLLVGASYIALECA 160
T +D + P +L+VG I LE A
Sbjct: 129 LRTLEDARRIQAGLRPQSRLLIVGGGVIGLELA 161
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 38.9 bits (90), Expect = 4e-04
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 11/71 (15%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPG-----------AHLGITSDDLFSLNKDPGKVLL 149
GEE + + +++ GG P P + + + P K+ +
Sbjct: 173 DGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAI 232
Query: 150 VGASYIALECA 160
+G A E
Sbjct: 233 IGGGQSAAEAF 243
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 38.6 bits (90), Expect = 4e-04
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 16/105 (15%)
Query: 71 ENNYEKELEKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRP---TYPD 124
+E + K V +D + VK ++ + +IA GG P + D
Sbjct: 93 SAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGS-QITYEKCLIATGGTPRSLSAID 151
Query: 125 IPGAHLGI------TSDD---LFSLNKDPGKVLLVGASYIALECA 160
GA + D L ++++ + ++G ++ E A
Sbjct: 152 RAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELA 196
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 37.9 bits (89), Expect = 8e-04
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 21/97 (21%)
Query: 79 EKNKID-YFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSD 135
E+ + + +D R+ E V ++ ++A G P + G D
Sbjct: 71 EQLNARILTHTRVTGIDPGHQRIWIGEE--EVRYRDLVLAWGAEPIRVPVEGDAQ----D 124
Query: 136 DLFSLN------------KDPGKVLLVGASYIALECA 160
L+ +N +VLL+GA I E A
Sbjct: 125 ALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFA 161
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 37.7 bits (88), Expect = 8e-04
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 23/105 (21%)
Query: 74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNF---IIAVGGRP--------TY 122
E ++ K K + V IIA G R T+
Sbjct: 447 RETQITK-----LLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTH 501
Query: 123 PDIPGAHLG----ITSDDLFSLNKDPGK-VLLVGA--SYIALECA 160
IPGA +T + + K GK V+++ A ++A A
Sbjct: 502 DPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLA 546
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria
phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Length = 87
Score = 35.1 bits (81), Expect = 0.001
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 12/87 (13%)
Query: 59 SKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG 118
+ C C AK + L K + + + + + F E+
Sbjct: 10 NIHKCGPCDNAK-----RLLTVKKQPF---EFINIMPEKGVFDDEKIAELLTKLGRDTQI 61
Query: 119 RPTYPDI---PGAHLGITSDDLFSLNK 142
T P + G+H+G D L K
Sbjct: 62 GLTMPQVFAPDGSHIG-GFDQLREYFK 87
Score = 29.0 bits (65), Expect = 0.27
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 10 DYNFQVVELDKLPNGAQIQTALFERTGQK-----TVPNIFIH-GKHI 50
+ F + +K + L + G+ T+P +F G HI
Sbjct: 30 PFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHI 76
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 35.9 bits (84), Expect = 0.003
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 82 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDI--PGAHLGITSDDLFS 139
I+ + V V + E+ S I++ G +D +
Sbjct: 83 AIN-DERQTVSV---LNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDA 138
Query: 140 L-----NKDPGKVLLVGASYIALECA 160
+ KVL+VGA Y++LE
Sbjct: 139 IDQFIKANQVDKVLVVGAGYVSLEVL 164
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 35.5 bits (82), Expect = 0.005
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 11/65 (16%)
Query: 103 EERTVSAQNFIIAVG--GRPTYPDIPGAHLG-ITSDDLFSLNKDPGKVLLVG----ASYI 155
T A +A G P P G H I D F+ G+ +++G
Sbjct: 126 TTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFN----KGQYVVIGGNESGFDA 181
Query: 156 ALECA 160
A + A
Sbjct: 182 AYQLA 186
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
c.47.1.10
Length = 241
Score = 35.0 bits (81), Expect = 0.006
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 30/100 (30%)
Query: 44 FIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGE 103
++ +H S+ IF+K CPFC KAK+ L + + E
Sbjct: 161 YLAPQHQVQESISIFTKPGCPFCAKAKQ-----LLHDKGLSF-----------------E 198
Query: 104 E----RTVSAQNFIIAVGGRPTYPD--IPGAHLGITSDDL 137
E + + + AV GR T P I G H+G SDDL
Sbjct: 199 EIILGHDATIVS-VRAVSGRTTVPQVFIGGKHIG-GSDDL 236
Score = 28.5 bits (64), Expect = 0.78
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 35 TGQKTVPNIFIHGKHI 50
+G+ TVP +FI GKHI
Sbjct: 215 SGRTTVPQVFIGGKHI 230
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 35.3 bits (82), Expect = 0.006
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 20/97 (20%)
Query: 83 IDYFN---AKAVFVDKHRVKFAGEERTVSAQNF---IIAVGGRPTYPD--------IPGA 128
+Y A+ V+ +R + + F I A G +P A
Sbjct: 446 KEYREAVLAELPNVEIYRESPMTGD-DIVEFGFEHVITATGATWRTDGVARFHTTALPIA 504
Query: 129 HLG--ITSDDLFSLNKDPGK-VLLVGA--SYIALECA 160
+ DDLF+ GK V++ Y+ A
Sbjct: 505 EGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVA 541
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 32.7 bits (74), Expect = 0.021
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 55 VVIFSKSWCPFCTKAKENNYE-KELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFI 113
+VI C + K+ + +E+++ + F + + + + + V F+
Sbjct: 48 MVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFV 107
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 32.6 bits (75), Expect = 0.041
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 86 FNAK---AVFVDKH---RVKFAGEERTVSAQNFIIAVGG--RPTYPDIPGAH 129
FN + A +V+ V EE V+ + I A G PDI G
Sbjct: 108 FNTRVTAARYVENDRLWEVTLDNEE-VVTCRFLISATGPLSASRMPDIKGID 158
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 31.6 bits (71), Expect = 0.042
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 47 GKHIDNNSVVIFSKSWCPFCTKAKE 71
H+ ++ WCP C KE
Sbjct: 8 AAHLRQIGGTMYGAYWCPHCQDQKE 32
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 32.5 bits (75), Expect = 0.049
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 86 FNAK---AVFVDKH---RVKFAGEERTVSAQNFIIAVGG--RPTYPDIPGAH 129
F + A+++D V E A+ + AVG +P++PG
Sbjct: 108 FGTEVTSALYLDDENLWEVTTDHGE-VYRAKYVVNAVGLLSAINFPNLPGLD 158
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 31.8 bits (73), Expect = 0.081
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 86 FNAK---AVFVDKH---RVKFAGEERTVSAQNFIIAVGG--RPTYPDIPGAH 129
F+ A F + V + + A+ I+A G P P+ PG
Sbjct: 115 FHTTVTAAAFDEATNTWTVDTNHGD-RIRARYLIMASGQLSVPQLPNFPGLK 165
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 31.4 bits (72), Expect = 0.11
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 105 RTVSAQNFIIAVGG--RPTYPDIPGAH 129
VSA+ ++A G P G
Sbjct: 144 DEVSARFLVVAAGPLSNANTPAFDGLD 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.16
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHG 47
D Q YN V L +++ AL E + N+ I G
Sbjct: 122 DNQVFAK-YN--VSRLQPY---LKLRQALLE---LRPAKNVLIDG 157
Score = 27.5 bits (60), Expect = 2.7
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 36/101 (35%)
Query: 2 VDIQTAPP--------DYNFQVVE--LDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID 51
I P D V ++KL + +L E+ +++ I I +++
Sbjct: 385 AHI---PTILLSLIWFDVIKSDVMVVVNKL-----HKYSLVEKQPKEST--ISIPSIYLE 434
Query: 52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVF 92
K K N E L ++ +D++N F
Sbjct: 435 ---------------LKVKLEN-EYALHRSIVDHYNIPKTF 459
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 30.4 bits (67), Expect = 0.27
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 31 LFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKE 71
++ P H+ ++ WCP C KE
Sbjct: 177 VYANQVPPPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKE 217
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 29.2 bits (65), Expect = 0.31
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 52 NNSVVIFSKSWCPFCTKAKE---NNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVS 108
+++F + C +C + Y E A + G E
Sbjct: 19 ELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRA-----APVQRLQMRDPLPPGLELARP 73
Query: 109 AQN---FIIAVGGRPTYPDIPGAHLGITSDDLF 138
F++ G + G G +D F
Sbjct: 74 VTFTPTFVLMAGDVES-----GRLEGYPGEDFF 101
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Length = 100
Score = 28.5 bits (64), Expect = 0.42
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 55 VVIFSKSWCPFCTKAKE 71
+ +F+K+ CP C +AKE
Sbjct: 19 LTLFTKAPCPLCDEAKE 35
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 29.4 bits (67), Expect = 0.56
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 65 FCT-KAKE--NNYEKELEKNKID-YFNAKAVFVDKHRVKFAGE--ERTVSAQNFIIAVGG 118
FC AK+ E+++ + V++ F TV A + ++A GG
Sbjct: 126 FCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAGTVDAASLVVASGG 185
Query: 119 RPTYP 123
+ + P
Sbjct: 186 K-SIP 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.96
Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 65/160 (40%)
Query: 1 MVDIQTAPPDYNFQVVE--LDK----LPNGAQIQTALFERTGQKTVPNIFIHGKHIDN-- 52
M+ I + + V+ ++K LP G Q++ +L N
Sbjct: 338 MLSIS----NLTQEQVQDYVNKTNSHLPAGKQVEISLV-------------------NGA 374
Query: 53 NSVVI--FSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQ 110
++V+ +S L K K A + +D+ R+ F+ + S +
Sbjct: 375 KNLVVSGPPQSLYGLNL---------TLRKAK-----APSG-LDQSRIPFSERKLKFSNR 419
Query: 111 NFI-IAVGGRP---TY---------PDIPGAHLGITSDDL 137
F+ +A P D+ ++ + D+
Sbjct: 420 -FLPVAS---PFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Score = 26.6 bits (58), Expect = 5.3
Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 47/162 (29%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI----DNNSVVIFSKSWCPFCT 67
N+ + + + +G +F+ + + F K + + F
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF-- 1744
Query: 68 KAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFA----GE-------------ERTVSAQ 110
++L+ + A A FA GE E V
Sbjct: 1745 --------EDLKSKGL--IPADAT--------FAGHSLGEYAALASLADVMSIESLVE-- 1784
Query: 111 NFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGA 152
++ G +P LG ++ + ++N PG+V +
Sbjct: 1785 --VVFYRGMTMQVAVPRDELGRSNYGMIAIN--PGRVAASFS 1822
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 28.3 bits (64), Expect = 1.1
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 75 EKELEK-NKIDYFNAKAVFVDK-----HRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 127
E+ K + Y+ V + K + A+ ++A G + +P IP
Sbjct: 67 LNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHT-KYLAERVLLATGMQEEFPSIPN 124
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 27.9 bits (63), Expect = 1.3
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 94 DKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 127
+ V+ G +A I+A+G P+I G
Sbjct: 87 GEFIVEIDGGR-RETAGRLILAMGVTDELPEIAG 119
>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated
protein, indomethacin, isomerase; HET: IMN; 2.60A
{Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB:
2pbj_A*
Length = 290
Score = 27.9 bits (61), Expect = 1.4
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAG 102
+ ++ CPFC+K + L+ + + Y + V + +KF+
Sbjct: 12 RLQLTLYQYKTCPFCSKVRA-----FLDFHALPYQVVEVNPVLRAEIKFSS 57
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 27.7 bits (62), Expect = 1.8
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 101 AGEERTVSAQNFIIAVG--GRPTYPDIPGA 128
A + R A+ I A G G P+ G
Sbjct: 113 ARDGRQWLARAVISATGTWGEAYTPEYQGL 142
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like,
oxidoreductase, competence, redox-active center; 1.40A
{Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Length = 202
Score = 27.4 bits (61), Expect = 1.9
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 63 CPFCTKAKENNYEKELEKNKIDYFNAKAVFVD 94
CP C ++ +++K+ ID + K FV+
Sbjct: 41 CPSCKVF-NSDIFPKIQKDFIDKGDVKFSFVN 71
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A
{Vaccinia virus}
Length = 124
Score = 27.0 bits (59), Expect = 2.1
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 16/99 (16%)
Query: 53 NSVVIFSKSWCPFCTKAKENNYEKELE-KNKIDYFNAKAVFVDKHRVKFAGEERTVSAQN 111
N ++IF K +C C ++ +EL+ + I + + + F+ G+ + +
Sbjct: 3 NVLIIFGKPYCSICENV--SDAVEELKSEYDILHVDILSFFLKDGDSSMLGDVKRGTLIG 60
Query: 112 FIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLV 150
AHL +F N ++ V
Sbjct: 61 NF-------------AAHLSNYIVSIFKYNPQTKQMAFV 86
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like,
structural genomics, PSI, protein structure initiative;
NMR {Nitrosomonas europaea}
Length = 107
Score = 26.7 bits (59), Expect = 2.2
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 41 PNIFIHGKHIDNNS----VVIFSKSWCPFCTKAKE 71
N++ H++N +V++ + C C +
Sbjct: 15 ENLYFQ-GHMNNQVEPRKLVVYGREGCHLCEEMIA 48
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 27.4 bits (61), Expect = 2.4
Identities = 8/62 (12%), Positives = 16/62 (25%), Gaps = 5/62 (8%)
Query: 78 LEKNKIDYFNAKAVFVD--KHRVKFAGEE---RTVSAQNFIIAVGGRPTYPDIPGAHLGI 132
L + I + +D V + + I+ +G + G
Sbjct: 66 LPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYG 125
Query: 133 TS 134
S
Sbjct: 126 YS 127
>3u97_A Ribonuclease toxin BRNT; RNAse SA/RELE small ribonuclease fold,
bRNA, H; HET: MSE; 1.10A {Brucella abortus}
Length = 114
Score = 26.7 bits (59), Expect = 2.4
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 46 HGKHIDN------NSVVIFSKSWCPFCTKAK--ENNYEKELEKNKIDYFNAKAVFVDKHR 97
HGK I N ++ ++ + PF K E + + K+ +D+ + F +
Sbjct: 7 HGKPIPNPLLGLDSTENLYFQGIDPFTMKIIWDEPKRQTNIAKHGLDFADLHFEFFLSAK 66
Query: 98 VKFAGEER 105
V +R
Sbjct: 67 VFPTKADR 74
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 27.1 bits (61), Expect = 2.5
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 27/85 (31%)
Query: 86 FNAKAVFVDKHRVKFA-------GEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLF 138
F + +F ++V G+ + IIA G Y LG+ S++ F
Sbjct: 75 FETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARY-------LGLPSEEAF 127
Query: 139 SLNKDPGKVLLVGASYIALECAGCD 163
G+ G S CA D
Sbjct: 128 K-----GR----GVSA----CATSD 139
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 27.0 bits (61), Expect = 2.9
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 65 FCT-KAKE--NNYEKELEKNKID-YFNAKAVFVDK----HRVKF--AGEERTVSAQNFII 114
FC A++ + E +K ++ V++ +V+F +N I+
Sbjct: 103 FCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIV 162
Query: 115 AVGGRPTYP 123
A GG + P
Sbjct: 163 ATGG-LSMP 170
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox
protein, protein folding, redox active centre; 1.81A
{Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Length = 186
Score = 26.6 bits (59), Expect = 3.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVD 94
VV++ CP+C + E K L KN ID + FV+
Sbjct: 15 VVVYGDYKCPYCKELDEKVMPK-LRKNYIDNHKVEYQFVN 53
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold,
reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter
pylori}
Length = 273
Score = 26.9 bits (58), Expect = 3.1
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 29 TALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF 86
A+F + + + I S CP C + + L++N +
Sbjct: 125 NAIFNEIPADYAIELPSTNAANKDKILYIVSDPMCPHC-QKELTKLRDHLKENTVRMV 181
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 3.3
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 68 KAKEN------NYEKELEKNKIDYFNAKAVFVDKHR 97
KAK++ +++EKNKI+ A F +
Sbjct: 115 KAKKDLEEWNQRQSEQVEKNKINNRIADKAFY-QQP 149
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 26.2 bits (58), Expect = 3.9
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 19/55 (34%)
Query: 46 HGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNK------IDYFNAKAVFVD 94
HG+ + +V F CP+C +++ A+ V
Sbjct: 18 HGRMV----MVYFHSEHCPYC---------QQMNTFVLSDPGVSRLLEARFVVAS 59
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 26.6 bits (59), Expect = 4.0
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 19/100 (19%)
Query: 78 LEKNKIDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG---AHLGI 132
+E+ I + A +D + A TV +IA G + + ++PG +
Sbjct: 69 VERKGIHFIAQSAEQIDAEAQNITLADGN-TVHYDYLMIATGPKLAFENVPGSDPHEGPV 127
Query: 133 TS-----------DDLFSLNKDPGKVLLVGASYIALECAG 161
S + +L ++PG +++ + C G
Sbjct: 128 QSICTVDHAERAFAEYQALLREPGPIVIGAMAGA--SCFG 165
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 26.7 bits (60), Expect = 4.1
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 28/86 (32%)
Query: 86 FNAKAVFVDKHRVKFAGEERTV--------SAQNFIIAVGGRPTYPDIPGAHLGITSDDL 137
+ + +++ G+E V A + I+ +G + LG+ +
Sbjct: 83 YEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRK-------LGVPGEQE 135
Query: 138 FSLNKDPGKVLLVGASYIALECAGCD 163
F+ G+ G SY C+ D
Sbjct: 136 FA-----GR----GISY----CSVAD 148
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 26.2 bits (57), Expect = 4.3
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDK 95
+VI KSWC C K E F + ++
Sbjct: 50 MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEE 90
>1zma_A Bacterocin transport accessory protein;
alpha-beta-alpha-sandwich, structural genomics, PSI,
protein structure initiative; HET: MSE; 1.25A
{Streptococcus pneumoniae} SCOP: c.47.1.1
Length = 118
Score = 25.7 bits (56), Expect = 5.6
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 55 VVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYFN 87
+ CP+C K + E K I + N
Sbjct: 33 TFFIGRKTCPYCRKFAGTLSGVVAE-TKAHIYFIN 66
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 25.8 bits (57), Expect = 6.1
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 61 SWCPFCTKAKENNYEKELEK 80
SW ++ + N+ +E+ K
Sbjct: 43 SWNDSISQKQSNSELREIYK 62
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 26.0 bits (58), Expect = 6.5
Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 23/85 (27%)
Query: 86 FNAKAVFVDKHRVKFA-------GEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLF 138
F +V F+ + + + A I+A+G L
Sbjct: 83 FGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKR-------LSFVGSG-- 133
Query: 139 SLNKDPGKVLLVGASYIALECAGCD 163
+ G G S CA CD
Sbjct: 134 ---EVLGGFWNRGISA----CAVCD 151
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex,
catalytic fragment, structural GEN structural genomics
consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo
sapiens}
Length = 198
Score = 25.4 bits (55), Expect = 8.7
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 14/88 (15%)
Query: 5 QTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCP 64
+A PD FQ + L Q LF RT + V W
Sbjct: 4 SSALPDPGFQKITLSSSSEEYQKVWNLFNRTLPFY---------FVQKIERVQNLALWEV 54
Query: 65 FCTKAKENNYEKELEKNKIDYFNAKAVF 92
+ + + ++N + + +F
Sbjct: 55 YQWQKGQ-----MQKQNGGKAVDERQLF 77
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 25.6 bits (57), Expect = 9.1
Identities = 23/89 (25%), Positives = 28/89 (31%), Gaps = 31/89 (34%)
Query: 86 FNAKAVFVDKHRVKFA-----------GEERTVSAQNFIIAVGGRPTYPDIPGAHLGITS 134
F AK + V+ G A+ I+A G P LGI
Sbjct: 78 FGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK-------LGIPG 130
Query: 135 DDLFSLNKDPGKVLLVGASYIALECAGCD 163
+D F GK G S CA CD
Sbjct: 131 EDNFW-----GK----GVST----CATCD 146
>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis,
DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania
infantum}
Length = 471
Score = 25.5 bits (56), Expect = 9.7
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 47 GKHIDNNSVVIFSKSWCPFCTKAK 70
H+ ++ ++ + CPFC + +
Sbjct: 19 QGHMAARALKLYVSATCPFCHRVE 42
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH;
2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Length = 294
Score = 25.3 bits (56), Expect = 9.8
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 124 DIPGAHLGITSDDLFSLNKDPGKVLLVGA 152
DI + + L ++ G V LVGA
Sbjct: 4 DIGSMNTTVIPPSLLDVDFPAGSVALVGA 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,534,512
Number of extensions: 145058
Number of successful extensions: 613
Number of sequences better than 10.0: 1
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 163
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)