BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7679
(608 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QMU|A Chain A, Duck Carboxypeptidase D Domain Ii
pdb|1H8L|A Chain A, Duck Carboxypeptidase D Domain Ii In Complex With Gemsa
Length = 380
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 240/398 (60%), Gaps = 26/398 (6%)
Query: 114 IIPVQFSHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEG---SCNS 170
+ PV F HH+++ M+ L YP++TRLYSVG+SVE REL+V+ +D G +
Sbjct: 3 VQPVDFRHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGIHEAGEP 62
Query: 171 LARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGN 230
+++G + N V RE LN+ + + + + V S
Sbjct: 63 EFKYIGNMHGNEV--------------VGRELLLNLIEYLCKNFGTDPEVTD--LVQSTR 106
Query: 231 LHGGAIVASYPFDDSKCLGDRSSMIGRKNAHDVDLNRNFPGQFGPSKYNSVPEPETLAVE 290
+H + ++ S+ GDR +GR N+++ DLNRNFP QF + P+PETLAV
Sbjct: 107 IHIMPSMNPDGYEKSQ-EGDRGGTVGRNNSNNYDLNRNFPDQF--FQVTDPPQPETLAVM 163
Query: 291 KWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMY 350
WL+ PFVLSANLHGGSLV NYP+DD++ + S +PDD++F+ LA SY+ +KKMY
Sbjct: 164 SWLKTYPFVLSANLHGGSLVVNYPFDDDE-QGIAIYSKSPDDAVFQQLALSYSKENKKMY 222
Query: 351 KDPGCPE-YPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLP 409
+ C + YP E FP GI NGAQWY V GGMQD+NY++ N E+T+ELGC K+P A++LP
Sbjct: 223 QGSPCKDLYPTEYFPHGITNGAQWYNVPGGMQDWNYLNTNCFEVTIELGCVKYPKAEELP 282
Query: 410 SYWEDNLPALLSYIEQVHRGVAGFV-KGREGEGVAGASIAVEGLGHVVYSAQDGDYWRLL 468
YWE N +LL +I+QVHRG+ GFV +G G+ A+I+V + H V + +DGDYWRLL
Sbjct: 283 KYWEQNRRSLLQFIKQVHRGIWGFVLDATDGRGILNATISVADINHPVTTYKDGDYWRLL 342
Query: 469 APGNYTLHVSAPGYEPAIHQVSVENSTKATQLNITLAR 506
G Y + SA GY+P V V+ S Q+N TL+R
Sbjct: 343 VQGTYKVTASARGYDPVTKTVEVD-SKGGVQVNFTLSR 379
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 107/219 (48%), Gaps = 50/219 (22%)
Query: 39 FDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVSIISLYRLVTVSTT 98
F ++ FL A + PS +L+S+GKSV+ R+L+ ++ +S
Sbjct: 13 FSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVME-------------------ISDN 53
Query: 99 PAPIEEDIKKNKYGFIIPVQFSHHNYTQMQAEL----EHITKNY---PNLTRLYSVGQSV 151
P E + KY + H N + L E++ KN+ P +T L V
Sbjct: 54 PGIHEAGEPEFKY-----IGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDL------V 102
Query: 152 EKRELWVLVYNDEEGSCNS----LARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVK 207
+ + ++ + +G S VGRNN+N DLNRNFPDQF ++
Sbjct: 103 QSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNSNNYDLNRNFPDQFFQVTD--------- 153
Query: 208 KLEPETLAMISFIKNNPFVLSGNLHGGAIVASYPFDDSK 246
+PETLA++S++K PFVLS NLHGG++V +YPFDD +
Sbjct: 154 PPQPETLAVMSWLKTYPFVLSANLHGGSLVVNYPFDDDE 192
>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
(kininase I) Catalytic Domain
Length = 439
Score = 256 bits (654), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 159/417 (38%), Positives = 222/417 (53%), Gaps = 47/417 (11%)
Query: 117 VQFSHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGSCNSL---AR 173
+ F HH Y + L + P +TR+YS+G+SVE R L+VL ++D G L +
Sbjct: 2 LAFRHHRYDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFSDHPGIHEPLEPEVK 61
Query: 174 FVGRNNANGVDLNRNFPDQFDS--SSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNL 231
+VG + N L R Q E R + + +L +T I + S N
Sbjct: 62 YVGNMHGNEA-LGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHI--------LPSMNP 112
Query: 232 HGGAIVASYPFDDSKCLGDRSSMIGRKNAHDVDLNRNFPG---------QFG-------- 274
G + A ++ ++GR NA+ VDLNRNFP ++G
Sbjct: 113 DGYEVAA------AQGPNKPGYLVGRNNANGVDLNRNFPDLNTYIYYNEKYGGPNHHLPL 166
Query: 275 PSKYNSVPEPETLAVEKWLQDIPFVLSANLHGGSLVANYPYDDN-----QAMKPQVDSPT 329
P + S EPET AV +W+ FVLSANLHGG++VANYPYD + + ++ +PT
Sbjct: 167 PDNWKSQVEPETRAVIRWMHSFNFVLSANLHGGAVVANYPYDKSFEHRVRGVRRTASTPT 226
Query: 330 PDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHAN 389
PDD +F+ LA Y+ AH M++ C +Y FP GI NGA WY +S GMQD+NY+H N
Sbjct: 227 PDDKLFQKLAKVYSYAHGWMFQGWNCGDY----FPDGITNGASWYSLSKGMQDFNYLHTN 282
Query: 390 TLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVKGREGEGVAGASIAV 449
EITLEL C KFPP ++L W N AL+ ++EQVH+G+ G V + +A A I+V
Sbjct: 283 CFEITLELSCDKFPPEEELQREWLGNKEALIQFLEQVHQGIKGMVLDQNYNNLANAVISV 342
Query: 450 EGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPGYEPAIHQVSVENSTKATQLNITLAR 506
G+ H V S GDY+RLL PG YT+ +APGY+P V+V + T +N L R
Sbjct: 343 SGINHDVTSGDHGDYFRLLLPGIYTVSATAPGYDPETVTVTV-GPAEPTLVNFHLKR 398
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 47/228 (20%)
Query: 39 FDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVSIISLYRLVTVSTT 98
+D+L + L + P +++SIG+SV+ R L+ L+ S
Sbjct: 9 YDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLE-------------------FSDH 49
Query: 99 PA---PIEEDIKKNKYGFIIPVQFSHHNYTQMQAEL-EHITKNYPNLTRLYSVGQSVEKR 154
P P+E ++K ++ + + ++ +L E + + + N R + Q ++
Sbjct: 50 PGIHEPLEPEVK-----YVGNMHGNEALGRELMLQLSEFLCEEFRN--RNQRIVQLIQDT 102
Query: 155 ELWVLVYNDEEG-------SCNSLARFVGRNNANGVDLNRNFPD---------QFDSSSE 198
+ +L + +G N VGRNNANGVDLNRNFPD ++ +
Sbjct: 103 RIHILPSMNPDGYEVAAAQGPNKPGYLVGRNNANGVDLNRNFPDLNTYIYYNEKYGGPNH 162
Query: 199 RREQPLNVK-KLEPETLAMISFIKNNPFVLSGNLHGGAIVASYPFDDS 245
P N K ++EPET A+I ++ + FVLS NLHGGA+VA+YP+D S
Sbjct: 163 HLPLPDNWKSQVEPETRAVIRWMHSFNFVLSANLHGGAVVANYPYDKS 210
>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
Length = 426
Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 144/394 (36%), Positives = 219/394 (55%), Gaps = 42/394 (10%)
Query: 117 VQFSHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGSCNSLARFVG 176
+ F++H M+A L+ + +NY ++T L+S+G+SV+ R LWVLV + RF
Sbjct: 1 LDFNYHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLV----------VGRF-P 49
Query: 177 RNNANGVDLNRNFPDQFDSSSERREQPLNVKKL-------EPETLAMISFIKNNPFVLSG 229
+ + G+ + + + RE L++ +PE +I+ S
Sbjct: 50 KEHRIGIPEFKYVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLIN---------ST 100
Query: 230 NLHGGAIVASYPFDDSKCLG--DRSSMIGRKNAHDVDLNRNFPGQFGPSKYNSVP-EPET 286
+H I+ S D + + D IGR+N + DLNRNFP F +YN+V +PET
Sbjct: 101 RIH---IMPSMNPDGFEAVKKPDCYYSIGRENYNQYDLNRNFPDAF---EYNNVSRQPET 154
Query: 287 LAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQV--DSPTPDDSIFKLLASSYAN 344
+AV KWL+ FVLSANLHGG+LVA+YP+D+ + S TPDD +F+ LA +YA+
Sbjct: 155 VAVMKWLKTETFVLSANLHGGALVASYPFDNGVQATGALYSRSLTPDDDVFQYLAHTYAS 214
Query: 345 AHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPP 404
+ M K C + NFP G+ NG WY + GGMQDYNYI A EITLEL C K+P
Sbjct: 215 RNPNMKKGDECKN--KMNFPNGVTNGYSWYPLQGGMQDYNYIWAQCFEITLELSCCKYPR 272
Query: 405 AKDLPSYWEDNLPALLSYIEQVHRGVAGFVKGREGEGVAGASIAVEGLGHVV--YSAQDG 462
+ LPS+W +N +L+ YI+QVH GV G V + G + + V+ H+ + + G
Sbjct: 273 EEKLPSFWNNNKASLIEYIKQVHLGVKGQVFDQNGNPLPNVIVEVQDRKHICPYRTNKYG 332
Query: 463 DYWRLLAPGNYTLHVSAPGYEPAIHQVSVENSTK 496
+Y+ LL PG+Y ++V+ PG++P I +V + ++
Sbjct: 333 EYYLLLLPGSYIINVTVPGHDPHITKVIIPEKSQ 366
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 98/210 (46%), Gaps = 42/210 (20%)
Query: 42 LTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVSIISLYRLVTVSTTPAP 101
+ FL AQ S LHSIGKSV+ R+LW L G K I ++ V
Sbjct: 11 MEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRFPKEHRIGIPEFKYVANMHGDET 70
Query: 102 IEEDIKKNKYGFIIPVQFSHHNYTQMQAELEHITKNYPNLTRLYSVG-------QSVEKR 154
+ ++ + +++ + IT N N TR++ + ++V+K
Sbjct: 71 VGRELLLHLIDYLV----------TSDGKDPEIT-NLINSTRIHIMPSMNPDGFEAVKKP 119
Query: 155 ELWVLVYNDEEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETL 214
+ + +GR N N DLNRNFPD F+ ++ R +PET+
Sbjct: 120 DCYYS---------------IGRENYNQYDLNRNFPDAFEYNNVSR---------QPETV 155
Query: 215 AMISFIKNNPFVLSGNLHGGAIVASYPFDD 244
A++ ++K FVLS NLHGGA+VASYPFD+
Sbjct: 156 AVMKWLKTETFVLSANLHGGALVASYPFDN 185
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 160/261 (61%), Gaps = 12/261 (4%)
Query: 255 IGRKNAHDVDLNRNFPGQFGPSKYNSVP----EPETLAVEKWLQDIPFVLSANLHGGSLV 310
+GR NA ++DLNR+FP + S + + +PET A+ W+ PFVLSAN HGG++V
Sbjct: 163 VGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALVNWIVSKPFVLSANFHGGAVV 222
Query: 311 ANYPYDDNQAMKPQVD-SPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVN 369
A+YPYD++ A + S TPDD +FK LA +Y++ H M K C ++F GGI N
Sbjct: 223 ASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNC----NDSFSGGITN 278
Query: 370 GAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRG 429
GA WY +SGGMQD+NY +N E+T+EL C K+P A LP W+ N +LL + Q H G
Sbjct: 279 GAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIG 338
Query: 430 VAGFVKGREGEGVAGASIAVEGLGHV-VYSAQDGDYWRLLAPGNYTLHVSAPGYE-PAIH 487
+ G V G +A A++ V GL + +++ G+YWRLL PG Y++H SA GY+ A
Sbjct: 339 IKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQ 398
Query: 488 QVSVENSTK-ATQLNITLARI 507
QV V N + A +L+ LA +
Sbjct: 399 QVRVTNDNQEALRLDFKLAPV 419
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 117/227 (51%), Gaps = 33/227 (14%)
Query: 26 DPEPFLENPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVS 85
+ E FL+ PHY S ++L + P++ K+H +G+S++ R+L ALQ +++
Sbjct: 30 EDESFLQQPHYASQEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNL 89
Query: 86 IISLYRLVTVSTTPAPIEEDIKKNKYGFIIPVQFSHHNYTQMQAELEHITKNYPNLTRLY 145
+ + + A + D + + Q+ N+ R+
Sbjct: 90 LTPPVKYI------ANMHGDETVGRQLLVYMAQYLLGNHE-----------------RIS 126
Query: 146 SVGQSVEKRELWVLVYND-------EEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSE 198
+GQ V +++++ + +EG+C SL +VGR NA +DLNR+FPD+ + S
Sbjct: 127 DLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHV 186
Query: 199 RREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASYPFDDS 245
+ L + +PET A++++I + PFVLS N HGGA+VASYP+D+S
Sbjct: 187 HQ---LRAQSRQPETAALVNWIVSKPFVLSANFHGGAVVASYPYDNS 230
>pdb|3PRT|A Chain A, Mutant Of The Carboxypeptidase T
Length = 323
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 121 HHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGS 167
+HNY +M ++ + NYPN+ + +S+G+S E RELW + +D G+
Sbjct: 9 YHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGT 55
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 51/173 (29%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQ---GGGTNKNKVSIISLYRL 92
Y +++E+ + A P+ VK SIGKS + R+LWA++ GT++N+ + LY
Sbjct: 9 YHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEV--LYTA 66
Query: 93 VTVSTTPAPIEEDIKKNKYGFIIPVQFSHHNYTQMQAE-----LEHITKNYPNLTRLYSV 147
+ HH + E L+ T+NY +R+ ++
Sbjct: 67 L---------------------------HHAREHLTVEMALYTLDLFTQNYNLDSRITNL 99
Query: 148 GQSVEKRELWVLV--------YNDEEGSCNSLARFVGRNNAN---GVDLNRNF 189
V RE++++ Y+ GS S + N+ + G DLNRN+
Sbjct: 100 ---VNNREIYIVFNINPDGGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNY 149
>pdb|3V38|A Chain A, Carboxypeptidase T Mutant L254n
Length = 326
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 121 HHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGS 167
+HNY +M ++ + NYPN+ + +S+G+S E RELW + +D G+
Sbjct: 9 YHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGT 55
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 51/173 (29%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQ---GGGTNKNKVSIISLYRL 92
Y +++E+ + A P+ VK SIGKS + R+LWA++ GT++N+ + LY
Sbjct: 9 YHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEV--LYTA 66
Query: 93 VTVSTTPAPIEEDIKKNKYGFIIPVQFSHHNYTQMQAE-----LEHITKNYPNLTRLYSV 147
+ HH + E L+ T+NY +R+ ++
Sbjct: 67 L---------------------------HHAREHLTVEMALYTLDLFTQNYNLDSRITNL 99
Query: 148 GQSVEKRELWVLV--------YNDEEGSCNSLARFVGRNNAN---GVDLNRNF 189
V RE++++ Y+ GS S + N+ + G DLNRN+
Sbjct: 100 ---VNNREIYIVFNINPDGGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNY 149
>pdb|1OBR|A Chain A, Carboxypeptidase T
pdb|3V7Z|A Chain A, Carboxypeptidase T With Gemsa
pdb|4DUK|A Chain A, Carboxypeptidase T With L-benzylsuccinic Acid
Length = 326
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 121 HHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGS 167
+HNY +M ++ + NYPN+ + +S+G+S E RELW + +D G+
Sbjct: 9 YHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGT 55
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 51/173 (29%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQ---GGGTNKNKVSIISLYRL 92
Y +++E+ + A P+ VK SIGKS + R+LWA++ GT++N+ + LY
Sbjct: 9 YHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEV--LYTA 66
Query: 93 VTVSTTPAPIEEDIKKNKYGFIIPVQFSHHNYTQMQAE-----LEHITKNYPNLTRLYSV 147
+ HH + E L+ T+NY +R+ ++
Sbjct: 67 L---------------------------HHAREHLTVEMALYTLDLFTQNYNLDSRITNL 99
Query: 148 GQSVEKRELWVLV--------YNDEEGSCNSLARFVGRNNAN---GVDLNRNF 189
V RE++++ Y+ GS S + N+ + G DLNRN+
Sbjct: 100 ---VNNREIYIVFNINPDGGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNY 149
>pdb|3QNV|A Chain A, Carboxypeptidase T
pdb|4DJL|A Chain A, Carboxypeptidase T With N-sulfamoyl-l-phenylalanine
Length = 323
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 121 HHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGS 167
+HNY +M ++ + NYPN+ + +S+G+S E RELW + +D G+
Sbjct: 9 YHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGT 55
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 51/173 (29%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQ---GGGTNKNKVSIISLYRL 92
Y +++E+ + A P+ VK SIGKS + R+LWA++ GT++N+ + LY
Sbjct: 9 YHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEV--LYTA 66
Query: 93 VTVSTTPAPIEEDIKKNKYGFIIPVQFSHHNYTQMQAE-----LEHITKNYPNLTRLYSV 147
+ HH + E L+ T+NY +R+ ++
Sbjct: 67 L---------------------------HHAREHLTVEMALYTLDLFTQNYNLDSRITNL 99
Query: 148 GQSVEKRELWVLV--------YNDEEGSCNSLARFVGRNNAN---GVDLNRNF 189
V RE++++ Y+ GS S + N+ + G DLNRN+
Sbjct: 100 ---VNNREIYIVFNINPDGGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNY 149
>pdb|4AXV|A Chain A, Biochemical And Structural Characterization Of The Mpaa
Amidase As Part Of A Conserved Scavenging Pathway For
Peptidoglycan Derived Peptides In Gamma-Proteobacteria
Length = 243
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 24/115 (20%)
Query: 177 RNNANGVDLNRNFPDQ--------FDSSSERREQPLNVK-----KLEPETLAMISFI--K 221
R NAN VDLNR FP Q + SS + + VK +LEPE A+IS I +
Sbjct: 95 RANANQVDLNRAFPTQNWTEHGTVYRWSSHTPVRDVKVKTGDKEQLEPEVDALISLIELR 154
Query: 222 NNPFVLSGNLHGGAIVASYPFDDSKCLGDRSSMIGRKNAHDV--DLNRNFPGQFG 274
FV+S + F D D + +G++ + D++ PG FG
Sbjct: 155 RPKFVVSFH-------EPLAFVDDPAHSDLAKWLGKQFNLPIVDDVDYETPGSFG 202
>pdb|2BO9|A Chain A, Human Carboxypeptidase A4 In Complex With Human Latexin.
pdb|2BO9|C Chain C, Human Carboxypeptidase A4 In Complex With Human Latexin
Length = 308
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 120 SHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEG 166
++H+ + E+++I ++P+L R +G S E R ++VL ++ +G
Sbjct: 9 AYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKG 55
>pdb|2PCU|A Chain A, Human Carboxypeptidase A4 In Complex With A Cleaved
Hexapeptide
Length = 305
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 120 SHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEG 166
++H+ + E+++I ++P+L R +G S E R ++VL ++ +G
Sbjct: 7 AYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKG 53
>pdb|4A94|A Chain A, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
pdb|4A94|B Chain B, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
Length = 310
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 120 SHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEG 166
++H+ + E+++I ++P+L R +G S E R ++VL ++ +G
Sbjct: 11 AYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKG 57
>pdb|2BOA|A Chain A, Human Procarboxypeptidase A4.
pdb|2BOA|B Chain B, Human Procarboxypeptidase A4
Length = 404
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 120 SHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEG 166
++H+ + E+++I ++P+L R +G S E R ++VL ++ +G
Sbjct: 105 AYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKG 151
>pdb|1LQ9|A Chain A, Crystal Structure Of A Monooxygenase From The Gene
Actva-Orf6 Of Streptomyces Coelicolor Strain A3(2)
pdb|1LQ9|B Chain B, Crystal Structure Of A Monooxygenase From The Gene
Actva-Orf6 Of Streptomyces Coelicolor Strain A3(2)
pdb|1N5Q|A Chain A, Crystal Structure Of A Monooxygenase From The Gene
Actva-Orf6 Of Streptomyces Coelicolor In Complex With
Dehydrated Sancycline
pdb|1N5Q|B Chain B, Crystal Structure Of A Monooxygenase From The Gene
Actva-Orf6 Of Streptomyces Coelicolor In Complex With
Dehydrated Sancycline
pdb|1N5S|A Chain A, Crystal Structure Of A Monooxygenase From The Gene
Actva-Orf6 Of Streptomyces Coelicolor In Complex With
The Ligand Acetyl Dithranol
pdb|1N5S|B Chain B, Crystal Structure Of A Monooxygenase From The Gene
Actva-Orf6 Of Streptomyces Coelicolor In Complex With
The Ligand Acetyl Dithranol
pdb|1N5T|A Chain A, Crystal Structure Of A Monooxygenase From The Gene
Actva-Orf6 Of Streptomyces Coelicolor In Complex With
The Ligand Oxidized Acetyl Dithranol
pdb|1N5T|B Chain B, Crystal Structure Of A Monooxygenase From The Gene
Actva-Orf6 Of Streptomyces Coelicolor In Complex With
The Ligand Oxidized Acetyl Dithranol
pdb|1N5V|A Chain A, Crystal Structure Of A Monooxygenase From The Gene
Actva-orf6 Of Streptomyces Coelicolor In Complex With
The Ligand Nanaomycin D
pdb|1N5V|B Chain B, Crystal Structure Of A Monooxygenase From The Gene
Actva-orf6 Of Streptomyces Coelicolor In Complex With
The Ligand Nanaomycin D
Length = 112
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 274 GPSKYNSVPEPETLAVEKWLQDIPFVLSANLHG---GSLVANYP-YDDNQAMK 322
GP+ + + E T V++W++++P LSA H G+ V NY ++ QA +
Sbjct: 20 GPATQHKLVELATGGVQEWIREVPGFLSATYHASTDGTAVVNYAQWESEQAYR 72
>pdb|3LMS|A Chain A, Structure Of Human Activated Thrombin-Activatable
Fibrinolys Inhibitor, Tafia, In Complex With
Tick-Derived Funnelin Inh Tci
Length = 309
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 174 FVGRNNANGVDLNRNFP-----DQFDSSSERREQPLNVK-KLEPETLAMISFIKNN---- 223
F N+ G DLNRNF ++ SSS E + + EPE A+ SF++ N
Sbjct: 130 FYANNHCIGTDLNRNFASKHWCEEGASSSSCSETYCGLYPESEPEVKAVASFLRRNINQI 189
Query: 224 PFVLSGNLHGGAIVASYPFDDSK 246
+S + + IV Y + SK
Sbjct: 190 KAYISMHSYSQHIVFPYSYTRSK 212
>pdb|1JMU|B Chain B, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|D Chain D, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|F Chain F, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
Length = 666
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 224 PFVLSGNLHGGAIVASYPFDDSKCLGDRSSMIGRKNAHDVDLNRNFPGQFGPSKYNSVPE 283
P L G+ ++ AS P D ++C+ DR+S I D D P ++ P NSVP
Sbjct: 473 PAELIGSYTPESLNASLPNDAARCMIDRASKIAEAIKIDDDAG---PDEYSP---NSVPI 526
Query: 284 PETLAVEK 291
LA+ +
Sbjct: 527 QGQLAISQ 534
>pdb|2CSE|A Chain A, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|B Chain B, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|C Chain C, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|P Chain P, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Q Chain Q, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|R Chain R, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|J Chain J, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|K Chain K, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|L Chain L, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|T Chain T, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 708
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 224 PFVLSGNLHGGAIVASYPFDDSKCLGDRSSMIGRKNAHDVDLNRNFPGQFGPSKYNSVPE 283
P L G+ ++ AS P D ++C+ DR+S I D D P ++ P NSVP
Sbjct: 515 PAELIGSYTPESLNASLPNDAARCMIDRASKIAEAIKIDDDAG---PDEYSP---NSVPI 568
Query: 284 PETLAVEK 291
LA+ +
Sbjct: 569 QGQLAISQ 576
>pdb|3D66|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D67|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
Length = 424
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 174 FVGRNNANGVDLNRNFP-----DQFDSSSERREQPLNVK-KLEPETLAMISFIKNN---- 223
F N+ G DLNRNF ++ SSS E + + EPE A+ SF++ N
Sbjct: 245 FYANNHCIGTDLNRNFASKHWCEEGASSSSCSETYCGLYPESEPEVKAVASFLRRNINQI 304
Query: 224 PFVLSGNLHGGAIVASYPFDDSK 246
+S + + IV Y + SK
Sbjct: 305 KAYISMHSYSQHIVFPYSYTRSK 327
>pdb|3D68|A Chain A, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|B Chain B, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|C Chain C, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
Length = 424
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 174 FVGRNNANGVDLNRNFP-----DQFDSSSERREQPLNVK-KLEPETLAMISFIKNN---- 223
F N+ G DLNRNF ++ SSS E + + EPE A+ SF++ N
Sbjct: 245 FYANNHCIGTDLNRNFASKHWCEEGASSSSCSETYCGLYPESEPEVKAVASFLRRNINQI 304
Query: 224 PFVLSGNLHGGAIVASYPFDDSK 246
+S + + IV Y + SK
Sbjct: 305 KAYISMHSYSQHIVFPYSYTRSK 327
>pdb|3FX6|A Chain A, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|C Chain C, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|E Chain E, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FVL|A Chain A, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|C Chain C, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|E Chain E, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
Length = 307
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 119/326 (36%), Gaps = 64/326 (19%)
Query: 120 SHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGSCNSLARFVGR-- 177
++H ++ ++ + +P L +G+S E R ++VL ++ G N A ++
Sbjct: 11 TYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFS--TGGSNRPAIWIDLGI 68
Query: 178 ------NNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNL 231
A GV + F + + + P L+ ++ + I NP
Sbjct: 69 HSREWITQATGVWFAKKFTEDYG------QDPSFTAILD--SMDIFLEIVTNP------- 113
Query: 232 HGGAIVASYPFDDSKCLGDRSSMIGRKNAHDVDLNRNFPGQFGPSKYNSVP--------- 282
G A S ++ S+ VD NRN+ FG + +S P
Sbjct: 114 DGFAFTHS----QNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSPCSETYHGKY 169
Query: 283 ---EPETLAVEKWLQDIP-FVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLL 338
E E ++ +++D F ++H S + YPY PD + +
Sbjct: 170 ANSEVEVKSIVDFVKDHGNFKAFLSIHSYSQLLLYPYG-------YTTQSIPDKTELNQV 222
Query: 339 ASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLEL- 397
A S A K +Y +Y G I+ Y SGG D++Y T EL
Sbjct: 223 AKSAVEALKSLYGT--SYKY------GSIITTI--YQASGGSIDWSYNQGIKYSFTFELR 272
Query: 398 --GCYKF--PPAKDLPSYWEDNLPAL 419
G Y F P ++ +P+ E L L
Sbjct: 273 DTGRYGFLLPASQIIPTAQETWLGVL 298
>pdb|1HDQ|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With D-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|2CTB|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
pdb|2CTC|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
Length = 307
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 119/326 (36%), Gaps = 64/326 (19%)
Query: 120 SHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGSCNSLARFVGR-- 177
++H ++ ++ + +P L +G+S E R ++VL ++ G N A ++
Sbjct: 11 TYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFS--TGGSNRPAIWIDLGI 68
Query: 178 ------NNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNL 231
A GV + F + + + P L+ ++ + I NP
Sbjct: 69 HSREWITQATGVWFAKKFTEDYG------QDPSFTAILD--SMDIFLEIVTNP------- 113
Query: 232 HGGAIVASYPFDDSKCLGDRSSMIGRKNAHDVDLNRNFPGQFGPSKYNSVP--------- 282
G A S ++ S+ VD NRN+ FG + +S P
Sbjct: 114 DGFAFTHS----QNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSPCSETYHGKY 169
Query: 283 ---EPETLAVEKWLQDIP-FVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLL 338
E E ++ +++D F ++H S + YPY PD + +
Sbjct: 170 ANSEVEVKSIVDFVKDHGNFKAFLSIHSYSQLLLYPYG-------YTTQSIPDKTELNQV 222
Query: 339 ASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLEL- 397
A S A K +Y +Y G I+ Y SGG D++Y T EL
Sbjct: 223 AKSAVEALKSLYGT--SYKY------GSIITTI--YQASGGSIDWSYNQGIKYSFTFELR 272
Query: 398 --GCYKF--PPAKDLPSYWEDNLPAL 419
G Y F P ++ +P+ E L L
Sbjct: 273 DTGRYGFLLPASQIIPTAQETWLGVL 298
>pdb|2V17|L Chain L, Structure Of The Complex Of Antibody Mn423 With A Fragment
Of Tau Protein
pdb|3L1O|L Chain L, Crystal Structure Of Monoclonal Antibody Mn423 Fab
Fragment With Free Combining Site, Crystallized In The
Presence Of Zinc
Length = 214
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 147 VGQSVEKRELWVLVYNDEEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNV 206
+S+ K W Y ++ G N L + G +G P +F S + L +
Sbjct: 25 ASKSIRKFLAW---YREKPGKTNKLLIYSGSTLQSGT------PSRFSGSGSGTDFTLTI 75
Query: 207 KKLEPETLAMISFIKNNPFVLS 228
+LEPE AM ++N + L+
Sbjct: 76 SRLEPEDFAMYYCQQHNDYPLT 97
>pdb|1JQG|A Chain A, Crystal Structure Of The Carboxypeptidase A From
Helicoverpa Armigera
Length = 433
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 122 HNYTQMQAELEHITKNYPNLTRLYSVGQSVEKREL 156
H+Y ++ A L+ + K +PN+ + G+S E R +
Sbjct: 122 HSYEEVDAYLQELAKEFPNVVTVVEGGKSFEGRSI 156
>pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
pdb|3KGQ|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 119/326 (36%), Gaps = 64/326 (19%)
Query: 120 SHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGSCNSLARFVGR-- 177
++H ++ ++ + +P L +G+S E R ++VL ++ G N A ++
Sbjct: 11 TYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFS--TGGSNRPAIWIDLGI 68
Query: 178 ------NNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNL 231
A GV + F + + + P L+ ++ + I NP
Sbjct: 69 HSREWITQATGVWFAKKFTEDYG------QDPSFTAILD--SMDIFLEIVTNP------- 113
Query: 232 HGGAIVASYPFDDSKCLGDRSSMIGRKNAHDVDLNRNFPGQFGPSKYNSVP--------- 282
G A S ++ S+ VD NRN+ FG + +S P
Sbjct: 114 DGFAFTHS----QNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSPCSETYHGKY 169
Query: 283 ---EPETLAVEKWLQDIP-FVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLL 338
E E ++ +++D F ++H S + YPY PD + +
Sbjct: 170 ANSEVEVKSIVDFVKDHGNFKAFLSIHSYSQLLLYPYG-------YTTQSIPDKTELNQV 222
Query: 339 ASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLEL- 397
A S A K +Y +Y G I+ Y SGG D++Y T EL
Sbjct: 223 AKSAVEALKSLYGT--SYKY------GSIITTI--YQASGGSIDWSYNQGIKYSFTFELR 272
Query: 398 --GCYKF--PPAKDLPSYWEDNLPAL 419
G Y F P ++ +P+ E L L
Sbjct: 273 DTGRYGFLLPASQIIPTAQETWLGVL 298
>pdb|1BAV|A Chain A, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|B Chain B, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|C Chain C, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|D Chain D, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
Length = 309
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQ--GGGTNKNKVSI 86
Y + DE+ F+ Q+P V IG+S + R ++ L+ GG+N+ + I
Sbjct: 12 YHTLDEIYDFMDLLVAQHPELVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWI 64
>pdb|1HDU|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HEE|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
pdb|1HEE|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
pdb|1HEE|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
pdb|1HEE|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
pdb|1IY7|A Chain A, Crystal Structure Of Cpa And Sulfamide-based Inhibitor
Complex
pdb|5CPA|A Chain A, Refined Crystal Structure Of Carboxypeptidase A At 1.54
Angstroms Resolution.
pdb|6CPA|A Chain A, Crystal Structure Of The Complex Of Carboxypeptidase A
With A Strongly Bound Phosphonate In A New Crystalline
Form: Comparison With Structures Of Other Complexes
pdb|7CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase
A- Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|8CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase
A- Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|3CPA|A Chain A, X-Ray Crystallographic Investigation Of Substrate
Binding To Carboxypeptidase A At Subzero Temperature
pdb|4CPA|A Chain A, Refined Crystal Structure Of The Potato Inhibitor
Complex Of Carboxypeptidase A At 2.5 Angstroms
Resolution
pdb|4CPA|B Chain B, Refined Crystal Structure Of The Potato Inhibitor
Complex Of Carboxypeptidase A At 2.5 Angstroms
Resolution
Length = 307
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQ--GGGTNKNKVSI 86
Y + DE+ F+ Q+P V IG+S + R ++ L+ GG+N+ + I
Sbjct: 12 YHTLDEIYDFMDLLVAQHPELVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWI 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,290,848
Number of Sequences: 62578
Number of extensions: 900169
Number of successful extensions: 1751
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1687
Number of HSP's gapped (non-prelim): 65
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)