RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7679
(608 letters)
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 290 bits (743), Expect = 7e-93
Identities = 134/260 (51%), Positives = 177/260 (68%), Gaps = 6/260 (2%)
Query: 249 GDRSSMIGRKNAHDVDLNRNFPGQFGPSKYNSVPEPETLAVEKWLQDIPFVLSANLHGGS 308
GDR +GR N+++ DLNRNFP QF P+PETLAV WL+ PFVLSANLHGGS
Sbjct: 124 GDRGGTVGRNNSNNYDLNRNFPDQFFQV--TDPPQPETLAVMSWLKTYPFVLSANLHGGS 181
Query: 309 LVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPE-YPEENFPGGI 367
LV NYP+DD++ + S +PDD++F+ LA SY+ +KKMY+ C + YP E FP GI
Sbjct: 182 LVVNYPFDDDEQ-GIAIYSKSPDDAVFQQLALSYSKENKKMYQGSPCKDLYPTEYFPHGI 240
Query: 368 VNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVH 427
NGAQWY V GGMQD+NY++ N E+T+ELGC K+P A++LP YWE N +LL +I+QVH
Sbjct: 241 TNGAQWYNVPGGMQDWNYLNTNCFEVTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQVH 300
Query: 428 RGVAGFVK-GREGEGVAGASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPGYEPAI 486
RG+ GFV +G G+ A+I+V + H V + +DGDYWRLL G Y + SA GY+P
Sbjct: 301 RGIWGFVLDATDGRGILNATISVADINHPVTTYKDGDYWRLLVQGTYKVTASARGYDPVT 360
Query: 487 HQVSVENSTKATQLNITLAR 506
V V++ Q+N TL+R
Sbjct: 361 KTVEVDSKG-GVQVNFTLSR 379
Score = 103 bits (259), Expect = 4e-24
Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 50/223 (22%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVSIISLYRLVT 94
+ F ++ FL A + PS +L+S+GKSV+ R+L+ +
Sbjct: 9 RHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVM-------------------E 49
Query: 95 VSTTPAPIEEDIKKNKYGFIIPVQFSHHN--YTQMQAE--LEHITKNYPNLTRLYSVGQS 150
+S P E + KY + H N + +E++ KN+ V
Sbjct: 50 ISDNPGIHEAGEPEFKYIGNM-----HGNEVVGRELLLNLIEYLCKNFGTDPE---VTDL 101
Query: 151 VEKRELWVL-VYN------DEEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQP 203
V+ + ++ N +EG VGRNN+N DLNRNFPDQF ++ +
Sbjct: 102 VQSTRIHIMPSMNPDGYEKSQEGDRG---GTVGRNNSNNYDLNRNFPDQFFQVTDPPQ-- 156
Query: 204 LNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASYPFDDSK 246
PETLA++S++K PFVLS NLHGG++V +YPFDD +
Sbjct: 157 -------PETLAVMSWLKTYPFVLSANLHGGSLVVNYPFDDDE 192
Score = 66.4 bits (162), Expect = 7e-12
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 116 PVQFSHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEG 166
PV F HH+++ M+ L YP++TRLYSVG+SVE REL+V+ +D G
Sbjct: 5 PVDFRHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPG 55
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 276 bits (708), Expect = 5e-87
Identities = 111/266 (41%), Positives = 163/266 (61%), Gaps = 12/266 (4%)
Query: 251 RSSMIGRKNAHDVDLNRNFPGQFGPSKYNSVP----EPETLAVEKWLQDIPFVLSANLHG 306
+ +GR NA ++DLNR+FP + S + + +PET A+ W+ PFVLSAN HG
Sbjct: 159 LPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALVNWIVSKPFVLSANFHG 218
Query: 307 GSLVANYPYDDNQAM-KPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPG 365
G++VA+YPYD++ A + +S TPDD +FK LA +Y++ H M K C ++F G
Sbjct: 219 GAVVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNC----NDSFSG 274
Query: 366 GIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQ 425
GI NGA WY +SGGMQD+NY +N E+T+EL C K+P A LP W+ N +LL + Q
Sbjct: 275 GITNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQ 334
Query: 426 VHRGVAGFVKGREGEGVAGASIAVEGLGH-VVYSAQDGDYWRLLAPGNYTLHVSAPGYEP 484
H G+ G V G +A A++ V GL + +++ G+YWRLL PG Y++H SA GY+
Sbjct: 335 AHIGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQT 394
Query: 485 AIHQ-VSV-ENSTKATQLNITLARIN 508
+ Q V V ++ +A +L+ LA +
Sbjct: 395 SAPQQVRVTNDNQEALRLDFKLAPVE 420
Score = 117 bits (295), Expect = 2e-28
Identities = 69/262 (26%), Positives = 118/262 (45%), Gaps = 55/262 (20%)
Query: 7 SLCFLLCWVGCT--------TPVLVNNDPEPFLENPHYLSFDELTKFLVAAAQQNPSKVK 58
+L L +G + E FL+ PHY S ++L + P++ K
Sbjct: 3 TLGLLFASIGIAVLAMGVPHCRGYTIKEDESFLQQPHYASQEQLEDLFAGLEKAYPNQAK 62
Query: 59 LHSIGKSVQNRDLWALQGGGTNKNKVSIISLYRLVTVSTTPAPIEEDIKKNKYGFIIPVQ 118
+H +G+S++ R+L AL +S KY +
Sbjct: 63 VHFLGRSLEGRNLLAL-------------------QISRNTRSRNLLTPPVKYIANM--- 100
Query: 119 FSHHN--YTQMQAE--LEHITKNY---PNLTRLYSVGQSVEKRELWVL-VYN------DE 164
H + + +++ N+ +L +L V +++++ N +
Sbjct: 101 --HGDETVGRQLLVYMAQYLLGNHERISDLGQL------VNSTDIYLVPTMNPDGYALSQ 152
Query: 165 EGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNP 224
EG+C SL +VGR NA +DLNR+FPD+ + S + + + +PET A++++I + P
Sbjct: 153 EGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSR---QPETAALVNWIVSKP 209
Query: 225 FVLSGNLHGGAIVASYPFDDSK 246
FVLS N HGGA+VASYP+D+S
Sbjct: 210 FVLSANFHGGAVVASYPYDNSL 231
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 268 bits (686), Expect = 6e-84
Identities = 112/280 (40%), Positives = 162/280 (57%), Gaps = 11/280 (3%)
Query: 249 GDRSSMIGRKNAHDVDLNRNFPGQFGPSKYNSVPEPETLAVEKWLQDIPFVLSANLHGGS 308
D IGR+N + DLNRNFP F + + +PET+AV KWL+ FVLSANLHGG+
Sbjct: 119 PDCYYSIGRENYNQYDLNRNFPDAFEYNNVSR--QPETVAVMKWLKTETFVLSANLHGGA 176
Query: 309 LVANYPYDDNQAMKPQVD--SPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGG 366
LVA+YP+D+ + S TPDD +F+ LA +YA+ + M K C + NFP G
Sbjct: 177 LVASYPFDNGVQATGALYSRSLTPDDDVFQYLAHTYASRNPNMKKGDECKN--KMNFPNG 234
Query: 367 IVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQV 426
+ NG WY + GGMQDYNYI A EITLEL C K+P + LPS+W +N +L+ YI+QV
Sbjct: 235 VTNGYSWYPLQGGMQDYNYIWAQCFEITLELSCCKYPREEKLPSFWNNNKASLIEYIKQV 294
Query: 427 HRGVAGFVKGREGEGVAGASIAVEGLGHV--VYSAQDGDYWRLLAPGNYTLHVSAPGYEP 484
H GV G V + G + + V+ H+ + + G+Y+ LL PG+Y ++V+ PG++P
Sbjct: 295 HLGVKGQVFDQNGNPLPNVIVEVQDRKHICPYRTNKYGEYYLLLLPGSYIINVTVPGHDP 354
Query: 485 AIHQVSVENSTK---ATQLNITLARINLIAWSHQHDFSIT 521
I +V + ++ A + +I L + + S
Sbjct: 355 HITKVIIPEKSQNFSALKKDILLPFQGQLDSIPVSNPSCP 394
Score = 100 bits (249), Expect = 1e-22
Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 50/222 (22%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVSIISLYRLVT 94
+Y + + FL AQ S LHSIGKSV+ R+LW L
Sbjct: 4 NYHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVL-------------------V 44
Query: 95 VSTTPAPIEEDIKKNKYGFIIPVQFSHHN--YTQMQAE--LEHITKNYPNLTRLYSVGQS 150
V P I + KY + H + + ++++ + +
Sbjct: 45 VGRFPKEHRIGIPEFKYVANM-----HGDETVGRELLLHLIDYLVTSDGKDPE---ITNL 96
Query: 151 VEKRELWVL-VYN------DEEGSCNSLARFVGRNNANGVDLNRNFPDQFDSSSERREQP 203
+ + ++ N ++ C GR N N DLNRNFPD F+ ++ R+
Sbjct: 97 INSTRIHIMPSMNPDGFEAVKKPDCYYSI---GRENYNQYDLNRNFPDAFEYNNVSRQ-- 151
Query: 204 LNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASYPFDDS 245
PET+A++ ++K FVLS NLHGGA+VASYPFD+
Sbjct: 152 -------PETVAVMKWLKTETFVLSANLHGGALVASYPFDNG 186
Score = 65.0 bits (158), Expect = 2e-11
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 117 VQFSHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVL 159
+ F++H M+A L+ + +NY ++T L+S+G+SV+ R LWVL
Sbjct: 1 LDFNYHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVL 43
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 267 bits (684), Expect = 2e-83
Identities = 122/279 (43%), Positives = 162/279 (58%), Gaps = 27/279 (9%)
Query: 250 DRSSMIGRKNAHDVDLNRNFPGQFGPSKYNSVP-----------------EPETLAVEKW 292
++GR NA+ VDLNRNFP YN EPET AV +W
Sbjct: 125 KPGYLVGRNNANGVDLNRNFPDLNTYIYYNEKYGGPNHHLPLPDNWKSQVEPETRAVIRW 184
Query: 293 LQDIPFVLSANLHGGSLVANYPYDDN-----QAMKPQVDSPTPDDSIFKLLASSYANAHK 347
+ FVLSANLHGG++VANYPYD + + ++ +PTPDD +F+ LA Y+ AH
Sbjct: 185 MHSFNFVLSANLHGGAVVANYPYDKSFEHRVRGVRRTASTPTPDDKLFQKLAKVYSYAHG 244
Query: 348 KMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKD 407
M++ C +Y FP GI NGA WY +S GMQD+NY+H N EITLEL C KFPP ++
Sbjct: 245 WMFQGWNCGDY----FPDGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPPEEE 300
Query: 408 LPSYWEDNLPALLSYIEQVHRGVAGFVKGREGEGVAGASIAVEGLGHVVYSAQDGDYWRL 467
L W N AL+ ++EQVH+G+ G V + +A A I+V G+ H V S GDY+RL
Sbjct: 301 LQREWLGNKEALIQFLEQVHQGIKGMVLDQNYNNLANAVISVSGINHDVTSGDHGDYFRL 360
Query: 468 LAPGNYTLHVSAPGYEPAIHQVSVENSTKATQLNITLAR 506
L PG YT+ +APGY+P V+V + + T +N L R
Sbjct: 361 LLPGIYTVSATAPGYDPETVTVTVGPA-EPTLVNFHLKR 398
Score = 115 bits (288), Expect = 1e-27
Identities = 68/250 (27%), Positives = 100/250 (40%), Gaps = 47/250 (18%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVSIISLYRLVTV 95
+ +D+L + L + P +++SIG+SV+ R L+ L
Sbjct: 6 HHRYDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVL-------------------EF 46
Query: 96 STTPAPIEEDIKKNKYGFIIPVQFSHHN--YTQMQAE--LEHITKNYPNLTRLYSVGQSV 151
S P E + KY + H N + E + + + N + + Q +
Sbjct: 47 SDHPGIHEPLEPEVKYVGNM-----HGNEALGRELMLQLSEFLCEEFRNRNQ--RIVQLI 99
Query: 152 EKRELWVL-VYN------DEEGSCNSLARFVGRNNANGVDLNRNFPDQFDS-------SS 197
+ + +L N N VGRNNANGVDLNRNFPD
Sbjct: 100 QDTRIHILPSMNPDGYEVAAAQGPNKPGYLVGRNNANGVDLNRNFPDLNTYIYYNEKYGG 159
Query: 198 ERREQPL---NVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASYPFDDSKCLGDRSSM 254
PL ++EPET A+I ++ + FVLS NLHGGA+VA+YP+D S R
Sbjct: 160 PNHHLPLPDNWKSQVEPETRAVIRWMHSFNFVLSANLHGGAVVANYPYDKSFEHRVRGVR 219
Query: 255 IGRKNAHDVD 264
D
Sbjct: 220 RTASTPTPDD 229
Score = 65.0 bits (158), Expect = 3e-11
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 117 VQFSHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGS 167
+ F HH Y + L + P +TR+YS+G+SVE R L+VL ++D G
Sbjct: 2 LAFRHHRYDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFSDHPGI 52
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 128 bits (324), Expect = 3e-33
Identities = 39/190 (20%), Positives = 63/190 (33%), Gaps = 42/190 (22%)
Query: 263 VDLNRNFPGQFGPSKYNSV-P------------EPETLAVEKWLQDI------PFVLSAN 303
DLNRN+ ++G +S P PET A+ ++
Sbjct: 143 TDLNRNYGYKWGCCGGSSGSPSSETYRGRSAFSAPETAAMRDFINSRVVGGKQQIKTLIT 202
Query: 304 LHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENF 363
H S + YPY P D D ++FK +A++ A + +
Sbjct: 203 FHTYSELILYPYSYTYTDVPS-DMTQDDFNVFKTMANTMAQTNGYTPQ------------ 249
Query: 364 PGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYK-----FPPAKDLPSYWEDNLPA 418
G+ Y+ GGM D+ Y T E+ +PP + + N A
Sbjct: 250 -----QGSDLYIADGGMDDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEA 304
Query: 419 LLSYIEQVHR 428
+L E+
Sbjct: 305 VLYVAEKADC 314
Score = 82.0 bits (203), Expect = 3e-17
Identities = 56/250 (22%), Positives = 89/250 (35%), Gaps = 77/250 (30%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQ-----GGGTNKNKVSIISL 89
Y +++E+ + A P+ VK SIGKS + R+LWA++ G N+ +V +L
Sbjct: 8 GYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYTAL 67
Query: 90 Y--R-LVTVSTTPAPIEEDIKKNKYGFIIPVQFSHHNYTQMQAELEHITKNY---PNLTR 143
+ R +TV YT L+ T+NY +T
Sbjct: 68 HHAREHLTVEMA------------------------LYT-----LDLFTQNYNLDSRITN 98
Query: 144 LYSVGQSVEKRELWVL-VYN------DEEGSCNSLARFVGRNNAN----GVDLNRNFPDQ 192
L V RE++++ N D R + N+ G DLNRN+ +
Sbjct: 99 L------VNNREIYIVFNINPDGGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNYGYK 152
Query: 193 FDSS--------SE--RREQPLNVKKLEPETLAMISFIKN------NPFVLSGNLHGGAI 236
+ SE R + PET AM FI + H +
Sbjct: 153 WGCCGGSSGSPSSETYRGRSAFS----APETAAMRDFINSRVVGGKQQIKTLITFHTYSE 208
Query: 237 VASYPFDDSK 246
+ YP+ +
Sbjct: 209 LILYPYSYTY 218
Score = 49.7 bits (119), Expect = 1e-06
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 119 FSHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGS 167
+HNY +M ++ + NYPN+ + +S+G+S E RELW + +D G+
Sbjct: 7 SGYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGT 55
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 90.2 bits (223), Expect = 1e-19
Identities = 32/179 (17%), Positives = 52/179 (29%), Gaps = 31/179 (17%)
Query: 257 RKNAHDVDLNRNFPGQFGPSKYNSVPEPETLAVEKWLQDIPFVLSANLHGGSLVANYPYD 316
R NA DLNR + PS S PE V++ ++ L ++HG + +
Sbjct: 231 RTNAAGQDLNRAWLE---PSAERS---PEVWFVQQEMKRHGVDLFLDIHGDEEIPHVFAA 284
Query: 317 DNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVV 376
+ TP + A + G P G N A
Sbjct: 285 GCEG----NPGYTPRLERLEQRFREELMARGEFQIRHGYP-----RSAPGQANLALACNF 335
Query: 377 SGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDN---------LPALLSYIEQV 426
G D L T+E+ + + W L L ++++
Sbjct: 336 VGQTYD-------CLAFTIEMPFKDHDDNPEPGTGWSGARSKRLGQDVLSTLAVLVDEL 387
Score = 49.4 bits (117), Expect = 2e-06
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 177 RNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAI 236
R NA G DLNR + + + PE + +K + L ++HG
Sbjct: 231 RTNAAGQDLNRAWLEPS-------------AERSPEVWFVQQEMKRHGVDLFLDIHGDEE 277
Query: 237 VASYPFDDS 245
+
Sbjct: 278 IPHVFAAGC 286
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 75.2 bits (184), Expect = 3e-15
Identities = 27/170 (15%), Positives = 47/170 (27%), Gaps = 17/170 (10%)
Query: 257 RKNAHDVDLNRNFPGQFGPSKYNSVPEPETLAVEKWLQDIPFVLSANLHGGSLVANYPYD 316
R N + NR F + G P T K L + +L A G L +
Sbjct: 119 RFNRFGENPNRGFTLENGKP----TPNEHTSLEGKLLLEHAQLLCAASRDGILTCHE--- 171
Query: 317 DNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVV 376
D + V S P + + + + + P + +G +
Sbjct: 172 DVLMNETYVYSFEPTQTPGRFSLGLRDALGQYF---KLAKDGFIDECP--VTDGVIFNHF 226
Query: 377 SGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQV 426
+ + L E P +D + N A+ +I
Sbjct: 227 DTSFEAFLVRSGAKLAACSET-----PGQEDFDRRVQANSAAMGQFIAHC 271
Score = 34.0 bits (77), Expect = 0.11
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 177 RNNANGVDLNRNFPDQFDSSSERREQPLNVKKL 209
R N G + NR F + + L K L
Sbjct: 119 RFNRFGENPNRGFTLENGKPTPNEHTSLEGKLL 151
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 72.8 bits (178), Expect = 2e-14
Identities = 22/173 (12%), Positives = 47/173 (27%), Gaps = 19/173 (10%)
Query: 257 RKNAHDVDLNRNFPGQFGPSKYNSVPEPETLAVEKWLQDIPFVLSANLHGGSLVANYPYD 316
R N + NR F + G + P +T A + L + +L G L +
Sbjct: 118 RFNELGENPNRGFFIENGKA----KPGADTSAEGRILLEHAHLLQVASRDGILTCHEDVL 173
Query: 317 DNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPG-GIVNGAQWYV 375
+ S +A + P + + + +G +
Sbjct: 174 MT----DTYVYTFEPSQAPGRFSHSLRDALGQ-----YFPIAADGDVDNCPVRSGVIFNH 224
Query: 376 VSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHR 428
+ + + E P + L N A+ +++ +
Sbjct: 225 FDTSFESFLVRSGARVGCCSET-----PGQQPLDQRILANAAAMNTFVNMLAP 272
Score = 30.5 bits (68), Expect = 1.6
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 177 RNNANGVDLNRNFPDQFDSSSERREQPLNVKKL 209
R N G + NR F + + + + L
Sbjct: 118 RFNELGENPNRGFFIENGKAKPGADTSAEGRIL 150
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 69.8 bits (170), Expect = 6e-13
Identities = 47/321 (14%), Positives = 87/321 (27%), Gaps = 63/321 (19%)
Query: 119 FSHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYND--EEGSCNSLARFVG 176
F ++ + L + + + +G++VE R + ++V E G+ +
Sbjct: 130 FEPYSEERHSEFLGAVQQMP--QASVVELGRTVEGRPMSLVVLGTPDEAGAAKKKVWIIA 187
Query: 177 R---NNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHG 233
R + + + P+ +KL I N + GN
Sbjct: 188 RQHPGESMAEWFIEGLVKRLVGWGDWSGDPV-ARKLYDHATFYIVPNMNPDGSVHGN--- 243
Query: 234 GAIVASYPFDDSKCLGDRSSMIGRKNAHDVDLNRNFPGQFGPSKYNSVPEPETLAVEKWL 293
R NA +LNR + ++ PE L V +
Sbjct: 244 ----------------------LRTNAAGANLNREWMEP------DAERSPEVLVVRDAI 275
Query: 294 QDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDP 353
I L ++HG + ++ + S+ A +
Sbjct: 276 HAIGCDLFFDIHGDEDLPYVFAAGSEMLP---GFTEQQRVEQSAFIDSFKRASPDFQDEH 332
Query: 354 GCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWE 413
G YP + A Y+ L +TLE+ D W
Sbjct: 333 G---YPPGKYREDAFKLASKYI---------GHRFGCLSLTLEMPFKDNANLPDEHIGWN 380
Query: 414 DN---------LPALLSYIEQ 425
L A+L ++
Sbjct: 381 GARSASLGAAMLGAILEHVRA 401
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 8e-12
Identities = 94/620 (15%), Positives = 169/620 (27%), Gaps = 253/620 (40%)
Query: 95 VSTTP-----APIEEDIKKNKYGFIIPVQFSHHNYTQMQAELEHITKNYPNLTRLYSVGQ 149
ST P +E + ++P S +Q+Q + K P T
Sbjct: 4 YSTRPLTLSHGSLE-------HVLLVPTA-SFFIASQLQEQF---NKILPEPTE------ 46
Query: 150 SVEKRELWVLVYNDEEGSCNSL-ARFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKK 208
+DE + L +F+G + +P V +
Sbjct: 47 --------GFAADDEPTTPAELVGKFLG----------------Y---VSSLVEPSKVGQ 79
Query: 209 LEPETLAMISFIKNNPFVLSGN-LHGGAIVASYPFDDSKCLGDRSSMI----------GR 257
+ ++ +N L GN +H A+ A ++ L +I R
Sbjct: 80 FDQVLNLCLTEFENC--YLEGNDIH--ALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 258 --KNAHDVDLNRN-----------FPGQFGPSK------------YNSVPEP------ET 286
+ L R F GQ G + Y+ + ET
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQ-GNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 287 LA------------------VEKWLQ------DIPFVLSANLHGGSLVANYPYDDNQAMK 322
L+ + +WL+ D ++LS + S
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI---SC------------- 238
Query: 323 PQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPG------GIVNGAQWYVV 376
P I + + Y K + PG E G G+V +
Sbjct: 239 PL---------IGVIQLAHYVVTAKLLGFTPG--EL-RSYLKGATGHSQGLVTAV---AI 283
Query: 377 SGGM--QDYNYIHANTLEITLELG--CYK-FPPAKDLPSYWEDNL------PA------- 418
+ + + + + +G CY+ +P PS ED+L P+
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 419 -----LLSYIEQVHRGVAG--------------FVKGREGEGVAGASIAVEGLGHVV--Y 457
+ Y+ + + + V V+G ++ GL +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-------VSGPPQSLYGLNLTLRKA 396
Query: 458 SAQDG-DYWRL------LAPGNYTLHVSAPGY-----EPAIHQVSVENSTKATQLNITLA 505
A G D R+ L N L V++P + PA ++ + L
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASP-FHSHLLVPASDLINKD-----------LV 444
Query: 506 RINLIAWSHQHDFSITDNIETVTKYSTQLEMSYAMEAVETAHSVLAEKQNGFPGILD--- 562
+ N +++ + D I V Y T + + I+D
Sbjct: 445 KNN-VSF-NAKDIQI-----PV--YDT-----------FDGSDLRVLSGSISERIVDCII 484
Query: 563 SLRISYPKAGVSTYNH--DF 580
L + + H DF
Sbjct: 485 RLPVKWETTTQFKATHILDF 504
Score = 48.9 bits (116), Expect = 5e-06
Identities = 96/576 (16%), Positives = 165/576 (28%), Gaps = 205/576 (35%)
Query: 26 DPEPFLENPHYLSFDEL-TKFL--VAAAQQNPSKVKLHSIGKSVQNRDLWA-----LQGG 77
D EP + EL KFL V++ + + + L L+G
Sbjct: 51 DDEP-------TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC----LTEFENCYLEG- 98
Query: 78 GTNKNKV-SIISLYRLVTVSTTPAPIEEDIKKNKYGFIIPVQFSHHNYTQMQAELEHITK 136
N + ++ + +L+ + T +++ KN Y T K
Sbjct: 99 ----NDIHALAA--KLLQENDTTLVKTKELIKN-Y------------ITARIMAKRPFDK 139
Query: 137 NYPNL---------TRLYSV--GQSV------EKRELWVLVYNDE-----EGSCNSLARF 174
+ +L ++ GQ E R+L+ Y+ + S +L+
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ-TYHVLVGDLIKFSAETLSEL 198
Query: 175 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKK-LE-PETLAMISFIKNNPFVLSGNLH 232
+ +D + F + + + LE P ++ + P S L
Sbjct: 199 I----RTTLDAEKVFTQGLN-----------ILEWLENPSNTPDKDYLLSIPI--SCPLI 241
Query: 233 GGAIVASYPFDDSKCLGDRSSMIGRKNAHDVDLNRNFPGQFGPSKYNSVPEPETLAV--- 289
G +A Y +K LG +L G G S+ + +A
Sbjct: 242 GVIQLAHY-VVTAKLLG----------FTPGELRSYLKGATGHSQ--GLVTAVAIAETDS 288
Query: 290 -EKWLQDIPFVLSANLHGG--SLVANYPYDDNQAMKPQV--DS-------PTP------- 330
E + + ++ G A YP N ++ P + DS P+P
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEA-YP---NTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 331 -DDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGI--VNGAQWYVVSGGMQDYNYIH 387
+ + + N+H P I VNGA+ VVSG
Sbjct: 345 TQEQVQDYVN--KTNSHL-----------PAGK-QVEISLVNGAKNLVVSG--------P 382
Query: 388 ANTLE-ITLELGCYKFPPAKD-----------------LP-------SYWEDNLPALLSY 422
+L + L L K P D LP L+
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-------LVPA 435
Query: 423 IEQVHRGVAGFVKGREGEGVAGASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPGY 482
+ +++ + S + + VY DG R+L+ V
Sbjct: 436 SDLINKDLVK----------NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV----- 480
Query: 483 EPAIHQVSVENSTKATQLNITLARINLIAWSHQHDF 518
I ++ V TQ T H DF
Sbjct: 481 -DCIIRLPV-KWETTTQFKAT----------HILDF 504
Score = 43.1 bits (101), Expect = 3e-04
Identities = 37/201 (18%), Positives = 63/201 (31%), Gaps = 60/201 (29%)
Query: 2 SFSSISLCFL--LCWVGC----TTPVLVNNDPEP-----FLEN----PHY------LSFD 40
SF + L ++G P P LEN P L+ +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNT---SLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 41 ELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVS--IISLYRLVT-VST 97
++ ++ P+ ++ I S+ N G VS SLY L +
Sbjct: 348 QVQDYVNKTNSHLPAGKQVE-I--SLVN---------GAKNLVVSGPPQSLYGLNLTLRK 395
Query: 98 TPAPIEEDIKKNKY---------GFIIPVQ--FSHHNYTQMQAELEHITKNYPNLTRLYS 146
AP D + + F+ PV F H + + + I L
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFL-PVASPF-HSHL--LVPASDLI------NKDLVK 445
Query: 147 VGQSVEKRELWVLVYNDEEGS 167
S +++ + VY+ +GS
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGS 466
Score = 39.3 bits (91), Expect = 0.004
Identities = 50/265 (18%), Positives = 78/265 (29%), Gaps = 103/265 (38%)
Query: 367 IV--NGAQWYVVSGGMQDYNYIHANTLEITLEL---GCYKFPPA-----KDLPSY-WED- 414
IV N + GG + I N + E G K + SY +
Sbjct: 1664 IVINNPVNLTIHFGGEKG-KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 415 ----NL-----PALL--SYIEQVHRGVAGF--VKGREGEGVAGASIAVEGLGHVV--YSA 459
+ PAL A F +K +G A A+ A GH + Y+A
Sbjct: 1723 KGLLSATQFTQPALTLMEK--------AAFEDLK-SKGLIPADATFA----GHSLGEYAA 1769
Query: 460 ----------QD--------GDYWRLLAP------GNYTL------HVSAPGYEPAIHQV 489
+ G ++ P NY + V+A + A+ V
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 490 SVENSTKATQLNITLARINLIAWSHQHDFSITDNIETVTKYSTQLEMSYA----MEAVET 545
VE K T + + N N+E + Q Y + A++T
Sbjct: 1830 -VERVGKRTGWLVEIV--N-------------YNVE-----NQQ----YVAAGDLRALDT 1864
Query: 546 AHSVLAEKQNGFPGI-LDSLRISYP 569
+VL I + L+ S
Sbjct: 1865 VTNVL--NFIKLQKIDIIELQKSLS 1887
Score = 33.9 bits (77), Expect = 0.22
Identities = 34/298 (11%), Positives = 68/298 (22%), Gaps = 138/298 (46%)
Query: 144 LYSVGQSVEKRELWVLVYNDE------EGSCNSLARFVGRNN----------ANGVDLNR 187
LY S +++W + + S+ V NN G +
Sbjct: 1635 LYK--TSKAAQDVW-----NRADNHFKDTYGFSILDIV-INNPVNLTIHFGGEKGKRIRE 1686
Query: 188 NFPD-QFDSSSERREQPLNVKKLEPETLAMISFIKNNP--------------FVLS---- 228
N+ F++ + + + + K E +F + ++
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF--RSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 229 ------GNLHGGAIVA--S---Y----------PFDDS-KCLGDRSSMIGRKNAHDVDLN 266
G + A A S Y + + + R G V +
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR----GMTMQVAVPRD 1800
Query: 267 RNFPGQFG-----PSKYNSVPEPETLAVEKWLQDIPFVLSANLHGGSL-VANYPYDDNQA 320
+G P + + E A++ ++ + G + + NY
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQE--ALQYVVERV-----GKRTGWLVEIVNY------- 1846
Query: 321 MKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSG 378
N Q YV +G
Sbjct: 1847 -----------------------------------------NVENQ-----Q-YVAAG 1857
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 7e-11
Identities = 85/561 (15%), Positives = 156/561 (27%), Gaps = 175/561 (31%)
Query: 128 QAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGSCNSLARFVG----------- 176
+ E++HI + ++ R W L+ EE + +FV
Sbjct: 48 KEEIDHIIMSKDAVSGTL--------RLFWTLLSKQEEM----VQKFVEEVLRINYKFLM 95
Query: 177 ---RNNANGVDLN-RNFPDQFDS--SSERREQPLNVKKLEP-ETL-AMISFIKNNPFVLS 228
+ + R + +Q D + + NV +L+P L + ++ VL
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL- 154
Query: 229 GNLHG--GAIVASYPFDDSKCLGDRSSMIGRKNAHDVDLNRNFPGQ-----FGPSKYNSV 281
+ G G+ G ++ + + + NS
Sbjct: 155 --IDGVLGS-------------G-KTWVAL-DVCLSYKVQCKMDFKIFWLNLK--NCNS- 194
Query: 282 PEPETLAVEKWLQDIPFVLSANLH-GGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLAS 340
PET+ +E LQ + + + N +N + + +LL S
Sbjct: 195 --PETV-LEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSI----------QAELRRLLKS 240
Query: 341 -SYANA--------HKKMYK--DPGCP------EYPEENFPGGIVNGAQWYVVSGGMQDY 383
Y N + K + + C +F ++ A +S
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF----LSAATTTHISLDHHSM 296
Query: 384 NYIHANTLEITLE-LGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVKGREGEGV 442
+ L+ L C +DLP P LS I
Sbjct: 297 TLTPDEVKSLLLKYLDC----RPQDLPREVLTTNPRRLSII------------------- 333
Query: 443 AGASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPGYEPAIHQVSVENSTKATQ--- 499
SI +GL D W+ HV+ I + S+ A
Sbjct: 334 -AESIR-DGLATW-------DNWK---------HVNCDKLTTII-ESSLNVLEPAEYRKM 374
Query: 500 ----------LNITLARINLIAWSHQ------------HDFSITD---NIETVTKYSTQL 534
+I ++LI W H +S+ + T++ S L
Sbjct: 375 FDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 535 EMSYAMEAVETAHSVLAEKQNGFPGILDSLRISYPKAGVSTYNHDFYKSMQAVYNQSLRT 594
E+ +E H + + N P DS + P Y+H + + + +
Sbjct: 434 ELKVKLENEYALHRSIVDHYN-IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 595 YPK-------INNKPAHPGVP 608
+ + K H
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTA 513
Score = 41.0 bits (95), Expect = 0.001
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 86/232 (37%)
Query: 8 LCFLLCWVGCTTPVLVNNDPEPFLENPHYLSFDELTKFLVAAAQQNPSKVKLHSI--GKS 65
L + W ++ +D + ++L K+ + Q S + + SI
Sbjct: 392 LSLI--WFD-----VIKSDVMVVV--------NKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 66 VQNRDLWALQGGGTNKNKVSIISLYRLVTV--STTPAPIEEDIKKNKYGFIIPVQFSHHN 123
V+ + +AL ++ SI+ Y + S P D + +SH
Sbjct: 437 VKLENEYAL-----HR---SIVDHYNIPKTFDSDDLIPPYLD------QYF----YSHIG 478
Query: 124 YTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGSCNSLARFVGR------ 177
+ H L ++ E+ L+ +V+ D RF+ +
Sbjct: 479 H--------H----------LKNIEHP-ERMTLFRMVFLD--------FRFLEQKIRHDS 511
Query: 178 --NNANGVDLN-----RNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKN 222
NA+G LN + + + + E+ +N A++ F+
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN---------AILDFLPK 554
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 58.1 bits (141), Expect = 3e-09
Identities = 29/184 (15%), Positives = 54/184 (29%), Gaps = 33/184 (17%)
Query: 263 VDLNRNFPGQFGPSKYNSVP------------EPETLAVEKWLQDI--PFVLSANLHGGS 308
D NRNF + ++ P E ET V L + L +H
Sbjct: 137 ADGNRNFDFVWNSIGTSNSPCSDIYAGTSAFSEVETRVVRDILHEHLARMALYLTMHSFG 196
Query: 309 LVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIV 368
+ YP+ + S + + + + A+ + + G
Sbjct: 197 SMILYPWGHD-------GSLSQNALGLHTVGVAMASVIQSNALPNF------PPYTVGNS 243
Query: 369 NGAQWYVVSGGMQDYNYIHANTLEITLEL-----GCYKF-PPAKDLPSYWEDNLPALLSY 422
Y ++G +DY + L T EL G F P + + + ++
Sbjct: 244 ALVIGYYIAGSSEDYAHSIGVPLSYTYELPGLSSGWDGFHLPPQYIEQVCRETWEGIVVG 303
Query: 423 IEQV 426
+
Sbjct: 304 ARRA 307
Score = 51.6 bits (124), Expect = 3e-07
Identities = 33/221 (14%), Positives = 59/221 (26%), Gaps = 75/221 (33%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVSIISLYRLVT 94
+Y + + ++L ++ P + + +S + R + +
Sbjct: 5 NYQELEVIDEYLDYIGEKYPDVATVVNAAESFEGRPIKY-------------------IK 45
Query: 95 VSTTPAPIEEDIKKNKYGFIIPVQFSHHNYTQMQAELEHITKNYP--------NLTRLYS 146
+STT +NK I H E I+ P L +
Sbjct: 46 ISTTNFE-----DENKPVIFI--DGGIH-------AREWIS---PPSVTWAIHKLVEDVT 88
Query: 147 VGQSVEKRELWVL--------VYNDEEGSCNSLARFVGRNNAN-------GVDLNRNFPD 191
+EK + +L Y R N N G D NRNF
Sbjct: 89 ENDLLEKFDWILLPVVNPDGYKYTFTN---ERFWRKTRSTNNNPLSQICRGADGNRNFDF 145
Query: 192 QF-------DSSSE--RREQPLNVKKLEPETLAMISFIKNN 223
+ S+ + E ET + + +
Sbjct: 146 VWNSIGTSNSPCSDIYAGTSAFS----EVETRVVRDILHEH 182
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 56.3 bits (136), Expect = 1e-08
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 34/183 (18%)
Query: 263 VDLNRNFPGQFGPSKYNSVP------------EPETLAVEKWLQDI-PFVLSANLHGGSL 309
VD NRN+ FG +S P E E ++ +++ LH S
Sbjct: 233 VDPNRNWDAGFGGPGASSNPCSDSYHGPSANSEVEVKSIVDFIKSHGKVKAFIILHSYSQ 292
Query: 310 VANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVN 369
+ +PY + D +A A + + ++ +Y I
Sbjct: 293 LLMFPYGYK-------CTKLDDFDELSEVAQKAAQSLRSLHG----TKYKVGPICSVI-- 339
Query: 370 GAQWYVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPSYWEDNLPALLSYIEQ 425
Y SGG D++Y + EL G Y F PA+ + E+ L + +E
Sbjct: 340 ----YQASGGSIDWSYDYGIKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKAIMEH 395
Query: 426 VHR 428
V
Sbjct: 396 VRD 398
Score = 49.4 bits (118), Expect = 2e-06
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQ-GGGTNKNKVSI 86
Y + +E+++ + ++P V +IG S +NR + L+ G +K + +
Sbjct: 104 AYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGDKPAIWL 156
Score = 44.0 bits (104), Expect = 9e-05
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 122 HNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVL 159
H ++ E++++ +P L ++G S E R + VL
Sbjct: 106 HTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVL 143
Score = 35.9 bits (83), Expect = 0.039
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 14/74 (18%)
Query: 182 GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAMISFIKNN-PFVLSGNL 231
GVD NRN+ F + S+ + E E +++ FIK++ L
Sbjct: 232 GVDPNRNWDAGFGGPGASSNPCSDSYHGPSANS----EVEVKSIVDFIKSHGKVKAFIIL 287
Query: 232 HGGAIVASYPFDDS 245
H + + +P+
Sbjct: 288 HSYSQLLMFPYGYK 301
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 54.5 bits (131), Expect = 6e-08
Identities = 39/208 (18%), Positives = 67/208 (32%), Gaps = 51/208 (24%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVSIISLYRLVT 94
S++E+ +L A++ P+ V + GKS + R + L
Sbjct: 120 KIHSYEEVDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYL-------------------R 160
Query: 95 VSTTPAPIEEDIKKNKYGFIIPVQFSHHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKR 154
+STT +K ++ + + A L I K L + +
Sbjct: 161 ISTTNFQ-----DASKPVVMMQSLLHCREWVTLPATLYAIHK----LVIDVTESDLINNI 211
Query: 155 ELWVL-VYN------DEEGSC----NSLARFVGRNNANGVDLNRNFPDQF------DSSS 197
+ +L V N G N ++ N GVDLNRNF + S
Sbjct: 212 DWIILPVANPDGYVHTFGGDRYWRKNRATGYMAGNLCMGVDLNRNFGMNWGTASSSSVCS 271
Query: 198 E--RREQPLNVKKLEPETLAMISFIKNN 223
+ + EPE+ + I +
Sbjct: 272 DTFHGRSAFS----EPESSVIRDIIAEH 295
Score = 43.7 bits (103), Expect = 1e-04
Identities = 35/178 (19%), Positives = 57/178 (32%), Gaps = 37/178 (20%)
Query: 263 VDLNRNFPGQFGPSKYNSVP------------EPETLAVEKWLQDIP--FVLSANLHGGS 308
VDLNRNF +G + +S EPE+ + + + L ++H
Sbjct: 251 VDLNRNFGMNWG-TASSSSVCSDTFHGRSAFSEPESSVIRDIIAEHRNRMALYLDIHSFG 309
Query: 309 LVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIV 368
+ Y Y + + L+ A A ++ +Y N +
Sbjct: 310 SMILYGYGN--------GVLPSNALQLHLIGVQMAQAIDRVKWSSN-KDYIVGNIFHVL- 359
Query: 369 NGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQV 426
Y SGG DY A T EL P ++ + + +IEQ
Sbjct: 360 -----YAASGGASDYAMQAAAPFSYTYEL-----PAYRNSVWFDGFLVDP--DFIEQA 405
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 52.4 bits (126), Expect = 1e-07
Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 71/221 (32%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQ-GGGTNKNKVSIISLYRL- 92
Y + +E+++ + ++P V +IG S +NR + L+ G +K + + +
Sbjct: 5 AYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGDKPAIWLDAGIHAR 64
Query: 93 --VTVSTTPAPIEEDIKKNKYGFIIPVQFSHHNYTQMQAELEHITKNY---PNLTRLYSV 147
VT +T +T I +Y P++T +
Sbjct: 65 EWVTQATA------------------------LWT-----ANKIVSDYGKDPSITSI--- 92
Query: 148 GQSVEKRELWVL--------VYNDEEGSCNSLARFVGRNNANG-----VDLNRNFPDQF- 193
++ ++++L V++ + N + R + G VD NRN+ F
Sbjct: 93 ---LDALDIFLLPVTNPDGYVFSQTK---NRMWRKTRSKVSAGSLCVGVDPNRNWDAGFG 146
Query: 194 ------DSSSE--RREQPLNVKKLEPETLAMISFIKNNPFV 226
+ S+ + E E +++ FIK++ V
Sbjct: 147 GPGASSNPCSDSYHGPSANS----EVEVKSIVDFIKSHGKV 183
Score = 51.6 bits (124), Expect = 3e-07
Identities = 40/198 (20%), Positives = 64/198 (32%), Gaps = 43/198 (21%)
Query: 257 RKNAHD---------VDLNRNFPGQFGPSKYNSVP------------EPETLAVEKWLQD 295
RK VD NRN+ FG +S P E E ++ +++
Sbjct: 120 RKTRSKVSAGSLCVGVDPNRNWDAGFGGPGASSNPCSDSYHGPSANSEVEVKSIVDFIKS 179
Query: 296 IP-FVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPG 354
LH S + +PY + D +A A + +++
Sbjct: 180 HGKVKAFIILHSYSQLLMFPYGYK-------CTKLDDFDELSEVAQKAAQSLSRLHG--- 229
Query: 355 CPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPS 410
+Y I Y SGG D++Y + EL G Y F PA+ +
Sbjct: 230 -TKYKVGPICSVI------YQASGGSIDWSYDYGIKYSFAFELRDTGRYGFLLPARQILP 282
Query: 411 YWEDNLPALLSYIEQVHR 428
E+ L + +E V
Sbjct: 283 TAEETWLGLKAIMEHVRD 300
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 52.5 bits (126), Expect = 2e-07
Identities = 39/213 (18%), Positives = 74/213 (34%), Gaps = 59/213 (27%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVSIISLYRLVT 94
Y + +E+ F+ ++P+ V IG+S + R ++ L+ N+ +I
Sbjct: 106 TYHTLEEIYDFMDILVAEHPALVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIW------- 158
Query: 95 VSTTPAPIEEDIKKNKYGFIIPVQFSHHN---YTQMQAE--LEHITKNYPNLTRLYSVGQ 149
+ H+ TQ + IT+NY + ++
Sbjct: 159 ----------------------IDSGIHSREWITQASGVWFAKKITENYGQNSSFTAI-- 194
Query: 150 SVEKRELWVL-VYN----DEEGSCNSLARFVGRNNAN----GVDLNRNFPDQF------- 193
++ ++++ V N S N L R + G D NRN+ F
Sbjct: 195 -LDSMDIFLEIVTNPNGFAFTHSDNRLWRKTRSKASGSLCVGSDSNRNWDAGFGGAGASS 253
Query: 194 DSSSE--RREQPLNVKKLEPETLAMISFIKNNP 224
+E + P + E E ++ F+KNN
Sbjct: 254 SPCAETYHGKYPNS----EVEVKSITDFVKNNG 282
Score = 45.2 bits (107), Expect = 4e-05
Identities = 40/181 (22%), Positives = 63/181 (34%), Gaps = 34/181 (18%)
Query: 263 VDLNRNFPGQFGPSKYNSVP------------EPETLAVEKWLQDIP-FVLSANLHGGSL 309
D NRN+ FG + +S P E E ++ ++++ ++H S
Sbjct: 236 SDSNRNWDAGFGGAGASSSPCAETYHGKYPNSEVEVKSITDFVKNNGNIKAFISIHSYSQ 295
Query: 310 VANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVN 369
+ YPY D S +A S A K +Y Y + I
Sbjct: 296 LLLYPYGYK-------TQSPADKSELNQIAKSAVAALKSLYG----TSYKYGSIITVI-- 342
Query: 370 GAQWYVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPSYWEDNLPALLSYIEQ 425
Y SGG+ D+ Y + EL G F PA + ++ ALL+ +E
Sbjct: 343 ----YQASGGVIDWTYNQGIKYSFSFELRDTGRRGFLLPASQIIPTAQETWLALLTIMEH 398
Query: 426 V 426
Sbjct: 399 T 399
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 50.5 bits (121), Expect = 6e-07
Identities = 37/218 (16%), Positives = 67/218 (30%), Gaps = 71/218 (32%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVSIISLYRLVT 94
Y +++ + + +NP + +IG + +++ L+ G NK +I
Sbjct: 8 KYNNWETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPNKPAIF------- 60
Query: 95 VSTTPAPIEEDIKKNKYGFIIPVQFSHHN---YTQMQAE--LEHITKNY---PNLTRLYS 146
+ H + + + Y ++T
Sbjct: 61 ----------------------MDCGFHAREWISHAFCQWFVREAVLTYGYESHMTEF-- 96
Query: 147 VGQSVEKRELWVL--------VYNDEEGSCNSLARFVGRNNAN----GVDLNRNFPDQF- 193
+ K + +VL +Y + N + R NA G D NRNF +
Sbjct: 97 ----LNKLDFYVLPVLNIDGYIYTWTK---NRMWRKTRSTNAGTTCIGTDPNRNFDAGWC 149
Query: 194 ------DSSSE--RREQPLNVKKLEPETLAMISFIKNN 223
D E + E ET A+ FI+NN
Sbjct: 150 TTGASTDPCDETYCGSAAES----EKETKALADFIRNN 183
Score = 48.2 bits (115), Expect = 4e-06
Identities = 38/197 (19%), Positives = 63/197 (31%), Gaps = 45/197 (22%)
Query: 257 RKNAHD--------VDLNRNFPGQFGPSKYNSVP------------EPETLAVEKWLQDI 296
RK D NRNF + + ++ P E ET A+ ++++
Sbjct: 124 RKTRSTNAGTTCIGTDPNRNFDAGWCTTGASTDPCDETYCGSAAESEKETKALADFIRNN 183
Query: 297 --PFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPG 354
+H S + YPY + +++ LA + +Y
Sbjct: 184 LSSIKAYLTIHSYSQMILYPYSYD-------YKLPENNAELNNLAKAAVKELATLYG--- 233
Query: 355 CPEYPEENFPGGIVNGAQ-WYVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLP 409
+Y GA Y +GG D+ Y T EL G Y F P +
Sbjct: 234 -TKY-------TYGPGATTIYPAAGGSDDWAYDQGIKYSFTFELRDKGRYGFILPESQIQ 285
Query: 410 SYWEDNLPALLSYIEQV 426
+ E+ + A+ V
Sbjct: 286 ATCEETMLAIKYVTNYV 302
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB:
1cpx_A 1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P
1elm_P 1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A*
3fvl_A* 3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 49.7 bits (119), Expect = 1e-06
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVSII 87
Y + DE+ F+ ++P V IG+S + R ++ L+ N+ +I
Sbjct: 11 TYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIW 63
Score = 48.6 bits (116), Expect = 3e-06
Identities = 45/195 (23%), Positives = 68/195 (34%), Gaps = 42/195 (21%)
Query: 257 RKNAHD--------VDLNRNFPGQFGPSKYNSVP------------EPETLAVEKWLQDI 296
RK VD NRN+ FG + +S P E E ++ +++D
Sbjct: 127 RKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSPCSETYHGKYANSEVEVKSIVDFVKDH 186
Query: 297 P-FVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGC 355
F ++H S + YPY PD + +A S A K +Y
Sbjct: 187 GNFKAFLSIHSYSQLLLYPYGYT-------TQSIPDKTELNQVAKSAVAALKSLYG---- 235
Query: 356 PEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPSY 411
Y + I Y SGG D++Y T EL G Y F PA +
Sbjct: 236 TSYKYGSIITTI------YQASGGSIDWSYNQGIKYSFTFELRDTGRYGFLLPASQIIPT 289
Query: 412 WEDNLPALLSYIEQV 426
++ +L+ +E
Sbjct: 290 AQETWLGVLTIMEHT 304
Score = 46.3 bits (110), Expect = 1e-05
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 122 HNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVL 159
H ++ ++ + +P L +G+S E R ++VL
Sbjct: 13 HTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVL 50
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 50.2 bits (119), Expect = 1e-06
Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 32/182 (17%)
Query: 257 RKNAHDVDLNRNFPGQFGPSKYNSVPEPETLAVEKWLQDIPFVLSANLHGGSLVAN-YPY 315
R NA +LNR + + PE V + + L ++HG + +
Sbjct: 236 RTNAVGANLNREWQT------PSLERSPEVYYVVNKMHETGVDLFYDVHGDEGLPYVFLA 289
Query: 316 DDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYV 375
P D + L + A D +++ PG
Sbjct: 290 GCEG-------IPNYSDKL-ASLQQDFVAALSLASADFQTEFGYDKDEPG--------KA 333
Query: 376 VSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYW---------EDNLPALLSYIEQV 426
++ L TLE+ D W E +L A+ + I+++
Sbjct: 334 NLTVACNWVANTFKCLSNTLEMPFKDNANLADPFQGWSPERSVYFGEASLIAMRAVIDKI 393
Query: 427 HR 428
+
Sbjct: 394 GQ 395
Score = 36.7 bits (84), Expect = 0.020
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 16/84 (19%)
Query: 177 RNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGA- 235
R NA G +LNR + + PE +++ + L ++HG
Sbjct: 236 RTNAVGANLNREWQT-------------PSLERSPEVYYVVNKMHETGVDLFYDVHGDEG 282
Query: 236 --IVASYPFDDSKCLGDRSSMIGR 257
V + D+ + + +
Sbjct: 283 LPYVFLAGCEGIPNYSDKLASLQQ 306
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 49.4 bits (118), Expect = 2e-06
Identities = 38/213 (17%), Positives = 69/213 (32%), Gaps = 60/213 (28%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQ-GGGTNKNKVSIISLYRLV 93
Y S + + + A P + IG S +NR ++ L+ G + ++
Sbjct: 105 AYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVW------ 158
Query: 94 TVSTTPAPIEEDIKKNKYGFIIPVQFSHHN---YTQMQAE--LEHITKNYPNLTRLYSVG 148
+ H+ +Q A I +Y + S+
Sbjct: 159 -----------------------LNAGIHSREWISQATAIWTARKIVSDYQRDPAITSI- 194
Query: 149 QSVEKRELWVL-VYN----DEEGSCNSLARFVGRNNAN----GVDLNRNFPDQF------ 193
+EK ++++L V N + N L R N G D NRN+ F
Sbjct: 195 --LEKMDIFLLPVANPDGYVYTQTQNRLWRKTRSRNPGSSCIGADPNRNWNASFAGKGAS 252
Query: 194 -DSSSE--RREQPLNVKKLEPETLAMISFIKNN 223
+ SE + E E +++ FI+ +
Sbjct: 253 DNPCSEVYHGPHANS----EVEVKSVVDFIQKH 281
Score = 47.9 bits (114), Expect = 6e-06
Identities = 43/197 (21%), Positives = 60/197 (30%), Gaps = 42/197 (21%)
Query: 257 RKNA--------HDVDLNRNFPGQFGPSKYNSVP------------EPETLAVEKWLQDI 296
RK D NRN+ F + P E E +V ++Q
Sbjct: 222 RKTRSRNPGSSCIGADPNRNWNASFAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKH 281
Query: 297 P-FVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGC 355
F +LH S + YPY + PD +A A A +
Sbjct: 282 GNFKGFIDLHSYSQLLMYPYGYS-------VKKAPDAEELDKVARLAAKALASVSG---- 330
Query: 356 PEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPSY 411
EY + Y SG D+ Y + T EL G Y F PA +
Sbjct: 331 TEYQVGPTCTTV------YPASGSSIDWAYDNGIKFAFTFELRDTGTYGFLLPANQIIPT 384
Query: 412 WEDNLPALLSYIEQVHR 428
E+ L + +E V
Sbjct: 385 AEETWLGLKTIMEHVRD 401
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 48.9 bits (117), Expect = 2e-06
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQ-GGGTNKNKVSI 86
Y S + + + A P + IG S +NR ++ L+ G + ++
Sbjct: 9 AYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAV 61
Score = 48.1 bits (115), Expect = 4e-06
Identities = 43/197 (21%), Positives = 60/197 (30%), Gaps = 42/197 (21%)
Query: 257 RKNAHD--------VDLNRNFPGQFGPSKYNSVP------------EPETLAVEKWLQDI 296
RK D NRN+ F + P E E +V ++Q
Sbjct: 126 RKTRSRNPGSSCIGADPNRNWNASFAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKH 185
Query: 297 P-FVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGC 355
F +LH S + YPY + PD +A A A +
Sbjct: 186 GNFKGFIDLHSYSQLLMYPYGYS-------VKKAPDAEELDKVARLAAKALASVSG---- 234
Query: 356 PEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPSY 411
EY + Y SG D+ Y + T EL G Y F PA +
Sbjct: 235 TEYQVGPTCTTV------YPASGSSIDWAYDNGIKFAFTFELRDTGTYGFLLPANQIIPT 288
Query: 412 WEDNLPALLSYIEQVHR 428
E+ L + +E V
Sbjct: 289 AEETWLGLKTIMEHVRD 305
Score = 45.0 bits (107), Expect = 4e-05
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 122 HNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVL 159
H+ + E+++I ++P+L R +G S E R ++VL
Sbjct: 11 HSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVL 48
Score = 31.5 bits (72), Expect = 0.68
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 182 GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAMISFIKNNP 224
G D NRN+ F + SE + E E +++ FI+ +
Sbjct: 139 GADPNRNWNASFAGKGASDNPCSEVYHGPHANS----EVEVKSVVDFIQKHG 186
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 49.4 bits (118), Expect = 2e-06
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQGGGTNKNKVSII 87
Y ++ + + A +NP+ + IG + + R ++ L+ G +NK +I
Sbjct: 103 KYNKWETIEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAGQNKPAIF 155
Score = 48.2 bits (115), Expect = 5e-06
Identities = 35/198 (17%), Positives = 57/198 (28%), Gaps = 43/198 (21%)
Query: 257 RKNAHD--------VDLNRNFPGQFGPSKYNSVP------------EPETLAVEKWLQDI 296
RK D NRNF + + P E ET A+ ++++
Sbjct: 219 RKTRSTHTGSSCIGTDPNRNFDAGWCEIGASRNPCDETYCGPAAESEKETKALADFIRNK 278
Query: 297 P--FVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPG 354
+H S + YPY +++ LA + ++
Sbjct: 279 LSSIKAYLTIHSYSQMMIYPYSYA-------YKLGENNAELNALAKATVKELASLHG--- 328
Query: 355 CPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPS 410
+ G Y +GG D+ Y T EL G Y F P + +
Sbjct: 329 -----TKYTYGPG--ATTIYPAAGGSDDWAYDQGIRYSFTFELRDTGRYGFLLPESQIRA 381
Query: 411 YWEDNLPALLSYIEQVHR 428
E+ A+ V
Sbjct: 382 TCEETFLAIKYVASYVLE 399
Score = 45.2 bits (107), Expect = 5e-05
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 122 HNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVL 159
+ + ++A + + P L +G + E R +++L
Sbjct: 105 NKWETIEAWTQQVATENPALISRSVIGTTFEGRAIYLL 142
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 48.6 bits (116), Expect = 3e-06
Identities = 38/224 (16%), Positives = 66/224 (29%), Gaps = 81/224 (36%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWAL---QGGGTNKNKVSI----- 86
Y S +E+ ++ ++ P V+ IG S + L+ L + KN + I
Sbjct: 8 QYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIH 67
Query: 87 ----IS-------LYRLVTVSTTPAPIEEDIKKNKYGFIIPV------QFSHHNYTQMQA 129
IS + + ++ K+ +I+PV ++
Sbjct: 68 AREWISPAFCLWFVGSVTYYYGKEKMH-TNLLKHMDFYIMPVVNVDGYDYTWKKD----- 121
Query: 130 ELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGSCNSLARFVGRNNANGVDLNRNF 189
+W + E + G DLNRNF
Sbjct: 122 -------------------------RMWRKNRSLHEKNACV-----------GTDLNRNF 145
Query: 190 PDQF--------DSSSE--RREQPLNVKKLEPETLAMISFIKNN 223
+ S SE P + EPE A+ F++ N
Sbjct: 146 ASKHWCGEGASSSSCSEIYCGTYPES----EPEVKAVADFLRRN 185
Score = 42.0 bits (99), Expect = 4e-04
Identities = 42/198 (21%), Positives = 64/198 (32%), Gaps = 45/198 (22%)
Query: 257 RKNAHD--------VDLNRNFP-GQFGPSKYNSVP------------EPETLAVEKWLQD 295
RKN DLNRNF + +S EPE AV +L+
Sbjct: 125 RKNRSLHEKNACVGTDLNRNFASKHWCGEGASSSSCSEIYCGTYPESEPEVKAVADFLRR 184
Query: 296 I--PFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDP 353
++H S +PY + S + D L+A A + +++
Sbjct: 185 NIKHIKAYISMHSYSQKIVFPYSYS-------RSRSKDHEELSLVAREAVFAMENIHR-- 235
Query: 354 GCPEYPEENFPGGIVNGAQ-WYVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDL 408
N +G++ Y+ GG D+ Y T EL G Y F P +
Sbjct: 236 --------NIRYTHGSGSESLYLAPGGSDDWIYDLGIKYSFTFELRDKGKYGFLLPESYI 287
Query: 409 PSYWEDNLPALLSYIEQV 426
+ L A+ V
Sbjct: 288 RPTCSEALVAVAKIASHV 305
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 48.6 bits (116), Expect = 3e-06
Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 61/214 (28%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQ-GGGTNKNKVSIISLYRLV 93
Y S +E+ ++ ++ P V+ IG S + L+ L+ + K ++
Sbjct: 100 QYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMW------ 153
Query: 94 TVSTTPAPIEEDIKKNKYGFIIPVQFSHHN---YTQMQAE--LEHITKNYPNLTRLYSVG 148
+ H + + +T Y
Sbjct: 154 -----------------------IDCGIHAREWISPAFCLWFVGSVTYYYGKEKM---HT 187
Query: 149 QSVEKRELWVL-VYN----DEEGSCNSLARFVGRNNAN----GVDLNRNFPDQF------ 193
++ + +++ V N D + + R + G DLNRNF +
Sbjct: 188 NLLKHMDFYIMPVVNVDGYDYTWKKDRMWRKNRSLHEKNACVGTDLNRNFASKHWCGEGA 247
Query: 194 --DSSSE--RREQPLNVKKLEPETLAMISFIKNN 223
S SE P + EPE A+ F++ N
Sbjct: 248 SSSSCSEIYCGTYPES----EPEVKAVADFLRRN 277
Score = 39.8 bits (93), Expect = 0.002
Identities = 42/198 (21%), Positives = 64/198 (32%), Gaps = 45/198 (22%)
Query: 257 RKNAHD--------VDLNRNFPGQFGPSKYNSV-------------PEPETLAVEKWLQD 295
RKN DLNRNF + + S EPE AV +L+
Sbjct: 217 RKNRSLHEKNACVGTDLNRNFASKHWCGEGASSSSCSEIYCGTYPESEPEVKAVADFLRR 276
Query: 296 I--PFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDP 353
++H S +PY + S + D L+A A + +++
Sbjct: 277 NIKHIKAYISMHSYSQKIVFPYSYS-------RSRSKDHEELSLVAREAVFAMENIHR-- 327
Query: 354 GCPEYPEENFPGGIVNGAQ-WYVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDL 408
N +G++ Y+ GG D+ Y T EL G Y F P +
Sbjct: 328 --------NIRYTHGSGSESLYLAPGGSDDWIYDLGIKYSFTFELRDKGKYGFLLPESYI 379
Query: 409 PSYWEDNLPALLSYIEQV 426
+ L A+ V
Sbjct: 380 RPTCSEALVAVAKIASHV 397
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B*
1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Length = 274
Score = 35.2 bits (81), Expect = 0.042
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 420 LSYIEQVHRGVAGFVKGREGEGVAGASIAVEGLGHVVYSAQD---GDYW-RLLAPGNYTL 475
+ V + +G+ GA + ++ G V SA+ G++ L G YT+
Sbjct: 189 KNLYRFEKNYVTAGILV-QGDCFEGAKVVLKSGGKEVASAETNFFGEFKFDALDNGEYTV 247
Query: 476 HVSAPGYEPAIHQVSVENS 494
+ A G + V + S
Sbjct: 248 EIDADGKSYSDTVVIDDKS 266
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 32.6 bits (75), Expect = 0.22
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 12/37 (32%)
Query: 369 NGAQWYVVSGGMQ------------DYNYIHANTLEI 393
Q +++SGG + + AN L+
Sbjct: 101 RNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKF 137
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A
{Streptococcus pyogenes}
Length = 121
Score = 31.0 bits (70), Expect = 0.40
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 438 EGEGVAGASIAV-EGLGHVVYSAQDGDYWRL--LAPGNYTLH-VSAP-GYEPA------- 485
+G+ +AGA++ + + G + + + L PG YT +AP GYE A
Sbjct: 38 DGKELAGATMELRDSSGKTISTWISDGQVKDFYLMPGKYTFVETAAPDGYEVATAITFTV 97
Query: 486 --IHQVSVENSTKATQLNIT 503
QV+V +I
Sbjct: 98 NEQGQVTVNGKATKGDAHIV 117
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase,
complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella
pneumoniae subsp} PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Length = 258
Score = 30.1 bits (67), Expect = 1.8
Identities = 15/111 (13%), Positives = 30/111 (27%), Gaps = 20/111 (18%)
Query: 133 HITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGSCNS---LARFVGRNNANGVDLNRNF 189
+ T + + + R WV D +GS + ++ A G+
Sbjct: 53 YQTTIPLKDAAIMANCPDAQTRRKWVQRILDHDGSHGEDGGIEAWLRLGEAVGLS----- 107
Query: 190 PDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGGAIVASY 240
R+ L+ + + P + N F A +
Sbjct: 108 ----------RDDLLSERHVLPGVRFAVDAYLN--FARRACWQEAACSSLT 146
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.0
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 15/36 (41%)
Query: 391 LEITLELGCYKFPPAKDLPSYWEDNLPALL--SYIE 424
L+ +L+L Y +D+ PAL + +E
Sbjct: 25 LQASLKL-------------YADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 3.6
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 474 TLHVSAPGYEPAIH-QVSVE 492
+L + A PA+ + ++E
Sbjct: 28 SLKLYADDSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 5.2
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 14/29 (48%)
Query: 198 ERREQPLNVKKLE-------PET---LAM 216
E++ +KKL+ ++ LA+
Sbjct: 18 EKQA----LKKLQASLKLYADDSAPALAI 42
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 29.0 bits (65), Expect = 3.8
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 11/36 (30%)
Query: 369 NGAQWYVVSGGMQDY-----------NYIHANTLEI 393
+ +YV+SGGM + + I+ N
Sbjct: 92 HEIPFYVISGGMDFFVYPLLEGIVEKDRIYCNHASF 127
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin
fold, carbohydrate binding, domain swapping, O antigen
export; HET: PG4; 1.30A {Escherichia coli}
Length = 188
Score = 28.8 bits (64), Expect = 4.1
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 9/75 (12%)
Query: 424 EQVHRGVAGF-VKGREGEGVAGASIAVEGLGHVVYSAQDGDYWRL-------LAPGNYTL 475
V G +K +G + G + + G S GD L G+Y L
Sbjct: 82 YDFDCVVPGILIKTLDGLFLYGTNSFLASEGRENISVSRGDVRVFKFSLPVDLNSGDYLL 141
Query: 476 HVS-APGYEPAIHQV 489
+ G
Sbjct: 142 SFGISAGNPQTDMTP 156
>3g3l_A Putative uncharacterized membrane-associated PROT; YP_211325.1,
putative membrane-associated protein of unknown
function; 2.20A {Bacteroides fragilis nctc 9343}
Length = 327
Score = 28.9 bits (63), Expect = 4.6
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 7/136 (5%)
Query: 430 VAGFVKGRE-GEGVAGASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPGYEPAIHQ 488
+AG + G+ + A + + + +Y Y L VSA GY P Q
Sbjct: 17 IAGTITDATTGQELTTAKVTLGDKSVTSSFNEQVNY----KAEGYALVVSADGYYPVKRQ 72
Query: 489 VSVENSTKATQLNITL--ARINLIAWSHQHDFSITDNIETVTKYSTQLEMSYAMEAVETA 546
V + + T+ A +++ A TD + + A+E + +
Sbjct: 73 VYLNQVSDGQTSVATVNVALVSVEAAVIPPVVPPTDPETDINEGEATKVADKAVEVAKPS 132
Query: 547 HSVLAEKQNGFPGILD 562
S + + G +
Sbjct: 133 ESTVTDMLAGTTATPE 148
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 28.8 bits (64), Expect = 5.4
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 486 IHQVSVENSTKATQLNITLARINLIAWSHQHDFSITDNIETV 527
++++ +TK L I +A I L WS++ F +
Sbjct: 36 VYEMINAVNTKFRPLKIHIALIGLEIWSNKDKFEVKPAASVT 77
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics,
pyruvate-formate lyase-activating enzym MCSG,
APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Length = 182
Score = 28.4 bits (64), Expect = 5.5
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 121 HHNYTQMQAELEHITKNYPNLTRLYSVGQSVEKRELWVLVYNDEEGSCNSLARFVGR--N 178
H + + E I KN + R+ R + N +E + A F+
Sbjct: 70 HQTFCDV--PNELILKN---IRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPR 124
Query: 179 NANGVDL 185
+ ++L
Sbjct: 125 HPEIINL 131
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG,
structural genomics, protein structure initiative; 2.30A
{Methanosarcina mazei} SCOP: d.343.1.1
Length = 188
Score = 27.9 bits (61), Expect = 8.3
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 473 YTLHVSAPGYEPAI-HQVSVENSTKATQLNITLARINLIAWSHQHDFSITDN 523
Y L +S G P I ++ V + L+ + + H H+F + +
Sbjct: 9 YHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWEDYHLHEFEMVNP 60
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Rhodobacter
sphaeroides 2}
Length = 354
Score = 27.9 bits (61), Expect = 9.2
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 177 RNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISF 219
+ +G D+NR FP + + + P +
Sbjct: 106 LSPVDGRDINRCFPGDPRGTFSQMLAHFLDSVILPMADISVDM 148
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 28.1 bits (63), Expect = 9.7
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 217 ISFIKNNPFVLSGNLHGGAIVASYPFDDSKCLGDRSSMIGRKNAHDVDL 265
IS FV G+ + G V+ +D +G + G H ++
Sbjct: 89 ISTDHQGQFVFVGSYNAGN-VSVTRLEDGLPVGVVDVVEGLDGCHSANI 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.402
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,296,979
Number of extensions: 555626
Number of successful extensions: 1243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1179
Number of HSP's successfully gapped: 113
Length of query: 608
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 509
Effective length of database: 3,937,614
Effective search space: 2004245526
Effective search space used: 2004245526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)