BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy768
         (475 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C37|A Chain A, X-ray Structure Of The Putative Zn-dependent Peptidase
           Q74d82 At The Resolution 1.7 A. Northeast Structural
           Genomics Consortium Target Gsr143a
 pdb|3C37|B Chain B, X-ray Structure Of The Putative Zn-dependent Peptidase
           Q74d82 At The Resolution 1.7 A. Northeast Structural
           Genomics Consortium Target Gsr143a
          Length = 253

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 33/231 (14%)

Query: 208 DNFIEEHGNQVLPLGHPAYKR-VGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVF 266
           + F  E   Q  P+  P  +R V  V KRL+   +       F Y   ++ D  +NAF  
Sbjct: 24  NKFAVEIEKQQQPVNDPEVQRYVDKVGKRLLSGARAV----EFDYVFKVVKDDSVNAFAI 79

Query: 267 PDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWF 326
           P GR+++ TG+ +    + ELA VL+HE++H + +H   + +     E  Y + L ++  
Sbjct: 80  PGGRVYVHTGLLKAADNETELAGVLAHEINHAVARHGTRQXTQ----EYGYSLVLSLVLG 135

Query: 327 LLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLM 386
             P+         L  L   +F                     + RE E +AD +G++  
Sbjct: 136 DNPN--------XLAQLAGQLF--------------GKAGXXSYSREYENQADFLGVETX 173

Query: 387 ARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKM 437
            +A Y+      F+QK+   +   Q    +  + STHP    R   +++++
Sbjct: 174 YKAGYNPNGLTSFFQKLNAXDGGTQ--SNVARFFSTHPLTSERIQRVQAEI 222


>pdb|3K1P|A Chain A, Crystal Structure Of Full-Length Benm E226k Mutant
 pdb|3K1P|B Chain B, Crystal Structure Of Full-Length Benm E226k Mutant
          Length = 312

 Score = 28.9 bits (63), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 353 EREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAP---LFWQ 401
           E+     AD+  I + P  R+++   +E+G++L+ R    V+  P    F+Q
Sbjct: 15  EQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQ 66


>pdb|3K1M|A Chain A, Crystal Structure Of Full-Length Benm, R156h Mutant
 pdb|3K1M|B Chain B, Crystal Structure Of Full-Length Benm, R156h Mutant
          Length = 312

 Score = 28.9 bits (63), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 353 EREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAP---LFWQ 401
           E+     AD+  I + P  R+++   +E+G++L+ R    V+  P    F+Q
Sbjct: 15  EQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQ 66


>pdb|2H99|A Chain A, Crystal Structure Of The Effector Binding Domain Of A Benm
           Variant (R156h,T157s)
 pdb|2H99|B Chain B, Crystal Structure Of The Effector Binding Domain Of A Benm
           Variant (R156h,T157s)
 pdb|2H9B|A Chain A, Crystal Structure Of The Effector Binding Domain Of A Benm
           Variant (Benm R156hT157S)
 pdb|2H9B|B Chain B, Crystal Structure Of The Effector Binding Domain Of A Benm
           Variant (Benm R156hT157S)
          Length = 312

 Score = 28.9 bits (63), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 353 EREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAP---LFWQ 401
           E+     AD+  I + P  R+++   +E+G++L+ R    V+  P    F+Q
Sbjct: 15  EQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQ 66


>pdb|3K1N|A Chain A, Crystal Structure Of Full-Length Benm
 pdb|3K1N|B Chain B, Crystal Structure Of Full-Length Benm
          Length = 312

 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 353 EREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAP---LFWQ 401
           E+     AD+  I + P  R+++   +E+G++L+ R    V+  P    F+Q
Sbjct: 15  EQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQ 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,488,510
Number of Sequences: 62578
Number of extensions: 528563
Number of successful extensions: 1111
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1109
Number of HSP's gapped (non-prelim): 6
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)