BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy768
(475 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus
GN=Oma1 PE=3 SV=1
Length = 504
Score = 242 bits (618), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 148/443 (33%), Positives = 234/443 (52%), Gaps = 43/443 (9%)
Query: 22 TSPECLETLDTPRNIPASRSSINTELEQDTIGCILSCDKKYSTCLNFQITGHQDKHLTRV 81
T C + PRN+ R+ L+ C+ S K L + T D
Sbjct: 51 TVSHCYSVILLPRNLHFCRT-----LKNKRSRCLSSAQSKEMGVLTYNWTVWGDASC--- 102
Query: 82 LFHQSANHQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWS 140
S N+ IR +R FHTS P+ A P + LI KP+ +++ AI++ R RKWW
Sbjct: 103 ----SPNYA----AIREVRSFHTSAPRQAAPVPLLMLILKPVQKLL-AIIVGRGIRKWWQ 153
Query: 141 KLSPDQKKIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQL 199
L PD+K + +K+++ ++ + L++ GL ++ +YF HLE P+TGR K ++V
Sbjct: 154 ALPPDKKALFKDSVKRNKWRLL-LGLSAFGLLFVVFYFTHLEVSPVTGRSKLLLVGKEHF 212
Query: 200 NDVTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDP 259
++ + Y+ ++EE N +LP P Y V VV L N+ + + + ++ P
Sbjct: 213 RLLSDLEYEVWMEEFKNDLLPEEDPRYLTVKKVVYHLTQCNQDVPGVSEINWVVHVVHSP 272
Query: 260 LINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIV 319
+NAFV P+G++F+FTG+ +L+ +L HE++H +L H AEK S L+ L ++
Sbjct: 273 KVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLGHEIAHAVLGHAAEKASLVHLLDFLGMI 332
Query: 320 PLMIIWFLLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEA 378
L +IW + P D A++ Q + L+ +F+ P + R +E EA
Sbjct: 333 FLTMIWAICPRDSLAVLGQWIQSKLQEYMFDRP------------------YSRTLEAEA 374
Query: 379 DEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMK 438
D++GL+L A+AC DVR + +FWQ+M E+ PK+ E+LSTHPSH NRA L+ +
Sbjct: 375 DKIGLQLAAKACVDVRASSVFWQQMEFSESLHGY-PKLPEWLSTHPSHGNRAEYLDRLIP 433
Query: 439 EALDIRKECNCLPL-GPLFIPRL 460
+AL +R+ CNC PL GP PRL
Sbjct: 434 QALKLREVCNCPPLSGP--DPRL 454
>sp|Q3SZN3|OMA1_BOVIN Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2
SV=2
Length = 523
Score = 241 bits (615), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 230/419 (54%), Gaps = 34/419 (8%)
Query: 53 GCILSCDKKYSTCLNFQITGHQDKHLTR-------VLFHQSANHQLQVFNIRVLRCFHTS 105
GC+LS K ++ + T D + V+ S +H L R +R FHTS
Sbjct: 80 GCLLSSRSKEIWMISRKCTAWTDSFSRQLPMKNVPVVPAHSMSHPLNCLPTRDIRSFHTS 139
Query: 106 QPKNALPG-FIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAGI 164
A P + +I KP +++ AI++ R RKWW L P++K++ ++K++ K+ +
Sbjct: 140 PRCQAAPAPLLLMILKPAQKLL-AIIVGRGIRKWWQALPPNKKELFKESLRKNKWKLF-L 197
Query: 165 TLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGH 223
L+S GL ++ +YF HLE P+TGR K +I+ ++++ Y+ ++EE N +L
Sbjct: 198 GLSSFGLLFVVFYFTHLEVSPVTGRSKLLILGKEHFRLLSELEYEAWMEEFKNDMLTEKD 257
Query: 224 PAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQT 283
Y V AVV LI+ N+ + + I ++D P INAFV P+G++F+FTG+
Sbjct: 258 ARYVAVKAVVHHLIECNQDIPGISEINWIIHVVDSPDINAFVLPNGQVFVFTGLLNSVTD 317
Query: 284 DDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP-DLGAIVTQVLLDD 342
+L+ +L HE++H +L+H AEK S L+ L ++ L IW + P D A++ Q +
Sbjct: 318 IHQLSFLLGHEIAHAVLEHAAEKASLVHLLDFLGLIFLTTIWAICPRDSLALLGQWIQSK 377
Query: 343 LKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQK 402
L+ +F+ P + R +E EAD +GL+L A+AC DVR + +FWQ+
Sbjct: 378 LQEFLFDRP------------------YSRTLEAEADRIGLQLAAKACVDVRASSVFWQQ 419
Query: 403 MALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPL-GPLFIPRL 460
M E+ PK+ E+LSTHPSH NRA +L+ + +AL IR+ CNC PL GP PRL
Sbjct: 420 MEFAESL-HGHPKLPEWLSTHPSHGNRAEHLDRLIPQALKIRETCNCPPLSGP--DPRL 475
>sp|Q96E52|OMA1_HUMAN Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1
PE=1 SV=1
Length = 524
Score = 233 bits (594), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/371 (35%), Positives = 210/371 (56%), Gaps = 24/371 (6%)
Query: 86 SANHQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSP 144
S H L +IR +R FHTS A P + +I KP+ ++ AI++ R RKWW L P
Sbjct: 120 SVLHPLSPASIRAIRNFHTSPRFQAAPVPLLLMILKPVQKLF-AIIVGRGIRKWWQALPP 178
Query: 145 DQKKIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVT 203
++K+++ I+K++ K+ + L+S GL ++ +YF HLE PITGR K +++ Q ++
Sbjct: 179 NKKEVVKENIRKNKWKLF-LGLSSFGLLFVVFYFTHLEVSPITGRSKLLLLGKEQFRLLS 237
Query: 204 QIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINA 263
++ Y+ ++EE N +L Y V V+ LI+ NK + + I ++D P+INA
Sbjct: 238 ELEYEAWMEEFKNDMLTEKDARYLAVKEVLCHLIECNKDVPGISQINWVIHVVDSPIINA 297
Query: 264 FVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMI 323
FV P+G++F+FTG +L+ +L HE++H +L H AEK L+ L ++ L +
Sbjct: 298 FVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAEKAGMVHLLDFLGMIFLTM 357
Query: 324 IWFLLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVG 382
IW + P D A++ Q + L+ +F P + R++E EAD++G
Sbjct: 358 IWAICPRDSLALLCQWIQSKLQEYMFNRP------------------YSRKLEAEADKIG 399
Query: 383 LKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALD 442
L L A+AC D+R + +FWQ+M ++ PKM E+LSTHPSH NR L+ + +AL
Sbjct: 400 LLLAAKACADIRASSVFWQQMEFVDSLHG-QPKMPEWLSTHPSHGNRVEYLDRLIPQALK 458
Query: 443 IRKECNCLPLG 453
IR+ CNC PL
Sbjct: 459 IREMCNCPPLS 469
>sp|Q9D8H7|OMA1_MOUSE Metalloendopeptidase OMA1, mitochondrial OS=Mus musculus GN=Oma1
PE=2 SV=1
Length = 521
Score = 228 bits (582), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 208/365 (56%), Gaps = 27/365 (7%)
Query: 100 RCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQ 158
R F TS A P + LI KP+ +++ AI++ R RKWW L P++K++ ++K++
Sbjct: 130 RSFRTSARVQAAPVPLLLLILKPVQKLL-AIIVGRGIRKWWQALPPNKKELFKDSVRKNK 188
Query: 159 DKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQ 217
++ + L++ GL ++ +YF HLE P+TGR K ++V ++ + Y+ ++EE N
Sbjct: 189 WRLL-LGLSAFGLLFVVFYFTHLEVSPVTGRSKLLLVGKEHFRLLSDLEYEVWMEEFKND 247
Query: 218 VLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGM 277
+LP P Y V +V L N+ + + + ++D P +NAFV P+G++F+FTG+
Sbjct: 248 LLPERDPRYLTVKEMVYHLTQCNRDVPGISETNWVVHVVDSPAVNAFVLPNGQVFIFTGL 307
Query: 278 FQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP-DLGAIVT 336
+L+ +L HE++H +L H AEK S L+ L ++ L +IW + P D A++
Sbjct: 308 LNSVTDVHQLSFLLGHEIAHAVLGHAAEKASLVHLLDFLGMIFLTMIWAICPRDSLAVLG 367
Query: 337 QVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVA 396
Q + L+ +F+ P + R +E EAD+VGL+L A+AC DVR +
Sbjct: 368 QWIQSKLQEYMFDRP------------------YSRTLEAEADKVGLQLAAKACADVRAS 409
Query: 397 PLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPL-GPL 455
+FWQ+M E+ PK+ E+LSTHPSH NRA L+ + +AL +R+ CNC PL GP
Sbjct: 410 SVFWQQMEFSESLHGY-PKLPEWLSTHPSHGNRAEYLDRLIPQALKLREVCNCPPLSGP- 467
Query: 456 FIPRL 460
PRL
Sbjct: 468 -DPRL 471
>sp|E9QBI7|OMA1_DANRE Metalloendopeptidase OMA1, mitochondrial OS=Danio rerio GN=oma1
PE=3 SV=1
Length = 478
Score = 215 bits (548), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 124/366 (33%), Positives = 198/366 (54%), Gaps = 28/366 (7%)
Query: 100 RCFHTSQPKNALPGF--IYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKH 157
R FHTS + ALP ++++ KP+ +++ AI++ R RKWW L ++K++ +
Sbjct: 102 RGFHTSGRRRALPALPLLWMVLKPLQKIM-AIILGRSIRKWWVALPANKKQLFREWSWRR 160
Query: 158 QDKIAGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQ 217
+ G + +A +++F HL+ PITGR + ++ ++ Q D F+EE +
Sbjct: 161 RWHFLGAGTGLLFIASLFFFTHLDESPITGRTRLLVFSRKNFRELAQFNADAFMEEFKDS 220
Query: 218 VLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGM 277
++ P +K V VV+ L N+ E + + + ++D P +NAFV P+G IF+FTGM
Sbjct: 221 LIASSDPRHKVVEQVVQILAQRNQDIAEISAVPWTVHVVDSPTMNAFVLPNGEIFVFTGM 280
Query: 278 FQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP-DLGAIVT 336
+L +L HE++H L+ H AE+ S +E+L +V L IW + P D A +
Sbjct: 281 LNAVTDIHQLTFILGHEMAHALIGHAAEQASLSHVVELLSLVLLTAIWAVCPRDSLAALG 340
Query: 337 QVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVA 396
+ L +F+ PF R++E EAD+VGL++ A+AC DVR
Sbjct: 341 HWIQGKLVQFLFDRPF------------------SRKLEAEADQVGLQMAAKACADVRAG 382
Query: 397 PLFWQKMALKETQDQVG--PKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPLGP 454
P+FW++M E DQ+ P M E+LSTHPSH+NR L+ + EAL++R CNC P P
Sbjct: 383 PVFWEQM---EIFDQLSGQPTMPEWLSTHPSHQNRVRQLDRLIPEALELRARCNC-PELP 438
Query: 455 LFIPRL 460
PR+
Sbjct: 439 KTDPRV 444
>sp|Q9P7G4|OMA1_SCHPO Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1
Length = 337
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 147/282 (52%), Gaps = 36/282 (12%)
Query: 169 IGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYKR 228
I +YYF HLE PI+ R++F V + + Q AY + E+G+++LP HP
Sbjct: 75 IAGGGVYYFTHLEYVPISNRRRFNDVSLDFEKRMAQDAYKEVMSEYGDRMLPSYHPTTLY 134
Query: 229 VGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELA 288
V V+KR+I + + ++ K+ + +I DP NAFV P G++F+F G+ +C+ +D LA
Sbjct: 135 VSRVLKRIIAVSGM----SDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLA 190
Query: 289 TVLSHELSHTLLKHVAEKLS-NKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSII 347
VL+HE +H + +H AEK++ + I+++ + DL ++ LL+
Sbjct: 191 AVLAHETAHQVARHSAEKIAFTRAVSCIVFLAAASL------DLSGQLSHFLLN----FG 240
Query: 348 FELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKE 407
LPF R +METEAD +GL LM++AC+D A W++M E
Sbjct: 241 LLLPFSR------------------KMETEADYIGLMLMSQACFDPNAAKTLWERMDAAE 282
Query: 408 TQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNC 449
Q+G K + STHPS + R +E + EA R+ +C
Sbjct: 283 --GQMG-KALAFASTHPSSKKRIRKIEEWLPEAQVKRETSDC 321
>sp|P36163|OMA1_YEAST Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2
Length = 345
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 148/298 (49%), Gaps = 40/298 (13%)
Query: 169 IGLAYIYYFLHLETCPITGRQKFIIV-KPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYK 227
G ++Y+ HL+ P++ R +FI V +P +L + Y + + ++LP HP
Sbjct: 72 FGGCSLFYYTHLDKAPVSDRSRFIWVSRPLELT-IGNYTYKSIWRQTQQEILPPQHPLSI 130
Query: 228 RVGAVVKRLIDANKVYMEHNN-----FKYPITIIDDPLI--NAFVFPDGRIFMFTGMFQL 280
++ + ++++A +N K+ I +++DP NAFV P G++F+F+ + +
Sbjct: 131 KIENIFMKIVEAAYKDPSVDNSLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPI 190
Query: 281 CQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGA-IVTQVL 339
C DD +ATVL+HE +H L +H AE LS +L +V L GA + +L
Sbjct: 191 CANDDGIATVLAHEFAHQLARHTAENLSKAPIYSLLGLV-------LYTVTGAHAINNIL 243
Query: 340 LDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLF 399
LD +P R+METEAD +GL +M+RAC+ + +
Sbjct: 244 LDGF----------------------LRMPASRQMETEADYIGLMIMSRACFQPQESIKV 281
Query: 400 WQKMALKETQDQVGPKME-EYLSTHPSHENRANNLESKMKEALDIRKECNCLPLGPLF 456
W++MA E Q G + E+LSTHP+ R N+ + +A +I ++ +C +G +
Sbjct: 282 WERMANFEKQMNRGGVVNMEFLSTHPASTRRIENMSKWLPKANEIYEQSDCSSMGNYY 339
>sp|Q8ZCC3|Y3069_YERPE TPR repeat-containing protein YPO3069/y1412/YP_2691 OS=Yersinia
pestis GN=YPO3069 PE=4 SV=1
Length = 486
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 27/206 (13%)
Query: 239 ANKVYMEHNNFKYPI--TIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELS 296
N++ N+ + P ++++ INAF F G + + + +F+ + ELA+VL+HE+S
Sbjct: 78 GNRLVANANSVRTPFHFYLVNNDQINAFAFFGGNVVLHSALFRYTDNESELASVLAHEIS 137
Query: 297 HTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVT-QVLLDDLKSIIFELPFERE 355
H +H+A + + L PL + L L + + Q + L +
Sbjct: 138 HVTQRHLARAMEEQQRL-----APLTWVGVLGSILLTMASPQAGMAGLSGTL-------- 184
Query: 356 METEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPK 415
A + II F + E EAD +G++++ R+ +D + P F QK+A Q + K
Sbjct: 185 --AGAQQGII---SFTQGNEQEADRIGIQVLQRSGFDPQAMPNFLQKLA---DQSRYVSK 236
Query: 416 MEEYLSTHPSHENR---ANNLESKMK 438
E L THP ++R A N ++MK
Sbjct: 237 PPEMLLTHPLPDSRLSDARNRANQMK 262
>sp|Q9KQ40|Y2164_VIBCH TPR repeat-containing protein VC_2164 OS=Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=VC_2164
PE=4 SV=1
Length = 484
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 30/215 (13%)
Query: 232 VVKRLID--ANKVYMEHNNFKYPIT--IIDDPLINAFVFPDGRIFMFTGMFQLCQTDDEL 287
V+ ID +++ N+ K P T +I D INAF F G + + +G+F Q++ EL
Sbjct: 68 VLNEYIDNLGHRLVASANDVKTPFTFFMIRDRNINAFAFFGGYVALHSGLFLHAQSESEL 127
Query: 288 ATVLSHELSHTLLKHVA---EKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLK 344
A+V++HE++H +H+A E+ + ++ I + +++ P+ G +
Sbjct: 128 ASVMAHEIAHVTQRHLARSMEEQARRSPATIAALAGSLLLAIAAPEAGIAAINATMAG-- 185
Query: 345 SIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMA 404
SI ++ + R E EAD G+ +A+A +D P F+ ++A
Sbjct: 186 ------------------SIQGQINYTRSNEKEADRFGIATLAKAGFDANAMPQFFTRLA 227
Query: 405 LKETQDQVGPKMEEYLSTHPSHENRANNLESKMKE 439
+ P M L THP E+R + + ++
Sbjct: 228 DEYRYASKPPPM---LLTHPLPEDRITDSRERARQ 259
>sp|P66950|YFGC_SALTY TPR repeat-containing protein YfgC OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=yfgC PE=4 SV=1
Length = 487
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 31/191 (16%)
Query: 255 IIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSN-KTFL 313
+I++ INAF F G + + + +F+ + +LA+V++HE+SH +H+A + + K
Sbjct: 98 LINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSA 157
Query: 314 EILYIVPLMIIWFLL--PDLG-AIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPF 370
+ ++ L I + P G A +T L + +I F
Sbjct: 158 PLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMI---------------------SF 196
Query: 371 EREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENR- 429
++ E EAD +G++++ RA +D + P F +K+ Q + + E L THP E+R
Sbjct: 197 TQQNEQEADRIGIQVLQRAGFDPQAMPSFLEKLL---DQARYSTRPPEILLTHPLPESRL 253
Query: 430 --ANNLESKMK 438
A N ++M+
Sbjct: 254 ADARNRANQMR 264
>sp|P66951|YFGC_SALTI TPR repeat-containing protein YfgC OS=Salmonella typhi GN=yfgC PE=4
SV=1
Length = 487
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 31/191 (16%)
Query: 255 IIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSN-KTFL 313
+I++ INAF F G + + + +F+ + +LA+V++HE+SH +H+A + + K
Sbjct: 98 LINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSA 157
Query: 314 EILYIVPLMIIWFLL--PDLG-AIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPF 370
+ ++ L I + P G A +T L + +I F
Sbjct: 158 PLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMI---------------------SF 196
Query: 371 EREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENR- 429
++ E EAD +G++++ RA +D + P F +K+ Q + + E L THP E+R
Sbjct: 197 TQQNEQEADRIGIQVLQRAGFDPQAMPSFLEKLL---DQARYSTRPPEILLTHPLPESRL 253
Query: 430 --ANNLESKMK 438
A N ++M+
Sbjct: 254 ADARNRANQMR 264
>sp|P66949|YFGC_SHIFL TPR repeat-containing protein YfgC OS=Shigella flexneri GN=yfgC
PE=4 SV=1
Length = 487
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 33/201 (16%)
Query: 247 NNFKYPIT--IIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVA 304
N+ K P +I++ INAF F G + + + +F+ + +LA+V++HE+SH +H+A
Sbjct: 88 NSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLA 147
Query: 305 EKLSNKTFLEILYIVPLM---IIWFLLPDLG-AIVTQVLLDDLKSIIFELPFEREMETEA 360
+ ++ L V + ++ P G A +T L + +I
Sbjct: 148 RAMEDQQRSAPLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMI------------- 194
Query: 361 DESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYL 420
F ++ E EAD +G++++ R+ +D + P F +K+ Q + + E L
Sbjct: 195 --------SFTQQNEQEADRIGIQVLQRSGFDPQAMPTFLEKLL---DQARYSSRPPEIL 243
Query: 421 STHPSHENR---ANNLESKMK 438
THP E+R A N ++M+
Sbjct: 244 LTHPLPESRLADARNRANQMR 264
>sp|P66948|YFGC_ECOLI TPR repeat-containing protein YfgC OS=Escherichia coli (strain K12)
GN=yfgC PE=4 SV=1
Length = 487
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 33/201 (16%)
Query: 247 NNFKYPIT--IIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVA 304
N+ K P +I++ INAF F G + + + +F+ + +LA+V++HE+SH +H+A
Sbjct: 88 NSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLA 147
Query: 305 EKLSNKTFLEILYIVPLM---IIWFLLPDLG-AIVTQVLLDDLKSIIFELPFEREMETEA 360
+ ++ L V + ++ P G A +T L + +I
Sbjct: 148 RAMEDQQRSAPLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMI------------- 194
Query: 361 DESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYL 420
F ++ E EAD +G++++ R+ +D + P F +K+ Q + + E L
Sbjct: 195 --------SFTQQNEQEADRIGIQVLQRSGFDPQAMPTFLEKLL---DQARYSSRPPEIL 243
Query: 421 STHPSHENR---ANNLESKMK 438
THP E+R A N ++M+
Sbjct: 244 LTHPLPESRLADARNRANQMR 264
>sp|Q8XAD2|YFGC_ECO57 TPR repeat-containing protein YfgC OS=Escherichia coli O157:H7
GN=yfgC PE=4 SV=1
Length = 487
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 95/201 (47%), Gaps = 33/201 (16%)
Query: 247 NNFKYPIT--IIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVA 304
N+ K P +I++ INAF F G + + + +F+ + +LA+V++HE+SH +H+A
Sbjct: 88 NSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLA 147
Query: 305 EKLSNKTF---LEILYIVPLMIIWFLLPDLG-AIVTQVLLDDLKSIIFELPFEREMETEA 360
+ ++ L + + +++ P G A +T L + +I
Sbjct: 148 RAMEDQQRNAPLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMI------------- 194
Query: 361 DESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYL 420
F ++ E EAD +G++++ R+ +D + P F +K+ Q + + E L
Sbjct: 195 --------SFTQQNEQEADRIGIQVLQRSGFDPQAMPTFLEKLL---DQARYSSRPPEIL 243
Query: 421 STHPSHENR---ANNLESKMK 438
THP E+R A N ++M+
Sbjct: 244 LTHPLPESRLADARNRANQMR 264
>sp|Q9VB98|Y5521_DROME Probable Rho GTPase-activating protein CG5521 OS=Drosophila
melanogaster GN=CG5521 PE=1 SV=2
Length = 1958
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 1 MAQDSAPDLDNLDDLLRYIGHTSPECLETLDTPRNIPASRSSINTELEQDTIGCILSCDK 60
+A+D APDLD LDD+L YIGHTSPEC+ + N P + S ++ E I IL+
Sbjct: 1468 LAKDMAPDLDQLDDMLAYIGHTSPECVAPTVSQLNAPTA-SPLSGNQEAQAISVILN--- 1523
Query: 61 KYSTCLNFQITGHQDKHLTRVLFHQSANHQLQVFNIRVLRCFHTSQPKNALPGFIYLIFK 120
L + H + + L H S+N LQ + R L T+ ++LP + F+
Sbjct: 1524 --QRLLEQEFVTHSTQAPSPALRHASSNSSLQQPDQRSLHS--TTASFDSLPTRTEMPFQ 1579
>sp|P43674|YCAL_ECOLI Uncharacterized metalloprotease YcaL OS=Escherichia coli (strain
K12) GN=ycaL PE=3 SV=3
Length = 254
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 20/182 (10%)
Query: 201 DVTQIAYDNFIE-EHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDP 259
D IA E + GNQV KR+ + K L N + N+K +T
Sbjct: 48 DAKAIANQGCAEMDSGNQVASKSSKYGKRLAKIAKAL--GNNINGTPVNYKVYMT----S 101
Query: 260 LINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIV 319
+NA+ +G + +++G+ + D+E+ VL HEL H L H + E+
Sbjct: 102 DVNAWAMANGCVRVYSGLMDM-MNDNEIEGVLGHELGHVALGH--------SLAEMKASY 152
Query: 320 PLMIIWFLLPDLGAIVTQVL---LDDLKSIIFELPFEREMETEADESIIFELPFEREMET 376
++ + + +Q+ L D+ + R+ E+EAD+ F+L +R + T
Sbjct: 153 AIVAARDAISATSGVASQLSRSQLGDIAEGAINAKYSRDKESEADD-FSFDLLKKRGIST 211
Query: 377 EA 378
+
Sbjct: 212 QG 213
>sp|P25894|YGGG_ECOLI Uncharacterized metalloprotease YggG OS=Escherichia coli (strain
K12) GN=yggG PE=1 SV=2
Length = 252
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 251 YPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNK 310
Y + + D +NAF +G I +++G+ + TD+E+ V+ HE+ H L HV K
Sbjct: 91 YKVYMAKD--VNAFAMANGCIRVYSGLMDMM-TDNEVEAVIGHEMGHVALGHV------K 141
Query: 311 TFLEILYIVPLMIIWFLLPDLGAIV---TQVLLDDLKSIIFELPFEREMETEADE 362
+++ + + G IV +Q L +L + F + E EAD+
Sbjct: 142 KGMQV--ALGTNAVRVAAASAGGIVGSLSQSQLGNLGEKLVNSQFSQRQEAEADD 194
>sp|Q6GYP7|RGPA1_MOUSE Ral GTPase-activating protein subunit alpha-1 OS=Mus musculus
GN=Ralgapa1 PE=1 SV=1
Length = 2035
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 10 DNLDDLLRYIGHTSPECLETLDTPRNIPASRS-SINTELEQDTIGCILSCDKKYS 63
D LD+LL+Y+G TSPECL+ N+PA + I+ + E D I IL K+Y+
Sbjct: 1678 DVLDELLQYLGTTSPECLQRTGISLNVPAPQPLCISEKQENDVINAIL---KQYT 1729
>sp|Q6GYQ0|RGPA1_HUMAN Ral GTPase-activating protein subunit alpha-1 OS=Homo sapiens
GN=RALGAPA1 PE=1 SV=1
Length = 2036
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 10 DNLDDLLRYIGHTSPECLETLDTPRNIPASRS-SINTELEQDTIGCIL 56
D LD+LL+Y+G TSPECL+ NIPA + I+ + E D I IL
Sbjct: 1679 DVLDELLQYLGVTSPECLQRTGISLNIPAPQPVCISEKQENDVINAIL 1726
>sp|O55007|RGPA1_RAT Ral GTPase-activating protein subunit alpha-1 OS=Rattus norvegicus
GN=Ralgapa1 PE=1 SV=1
Length = 747
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 10 DNLDDLLRYIGHTSPECLETLDTPRNIPASRS-SINTELEQDTIGCILSCDKKYS 63
D LD+LL+Y+ TSPECL+ N+PA + I+ + E D I IL K+Y+
Sbjct: 504 DVLDELLQYLRTTSPECLQRTGISLNVPAPQPVCISEKQENDVINAIL---KQYT 555
>sp|Q6EPN8|FACE1_ORYSJ CAAX prenyl protease 1 homolog OS=Oryza sativa subsp. japonica
GN=FACE1 PE=2 SV=1
Length = 425
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 262 NAFV---FPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKH 302
NA++ F + RI ++ + Q C ++DE+ +V++HEL H L H
Sbjct: 250 NAYMYGFFKNKRIVLYDTLIQQCSSEDEIVSVIAHELGHWKLNH 293
>sp|Q8RX88|FACE1_ARATH CAAX prenyl protease 1 homolog OS=Arabidopsis thaliana GN=FACE1
PE=1 SV=1
Length = 424
Score = 36.2 bits (82), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 266 FPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKH 302
F + RI ++ + Q C+ +DE+ V++HEL H L H
Sbjct: 257 FKNKRIVLYDTLIQQCKNEDEIVAVIAHELGHWKLNH 293
>sp|P86411|RGPA2_RAT Ral GTPase-activating protein subunit alpha-2 OS=Rattus norvegicus
GN=Ralgapa2 PE=1 SV=1
Length = 1872
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 10 DNLDDLLRYIGHTSPECLETLDTPRNIPA-SRSSINTELEQDTIGCIL 56
D LD LL IGHTSPECL N P+ + S++N + E++ I IL
Sbjct: 1517 DVLDKLLENIGHTSPECLLPSQLNLNEPSPTPSAMNCDQEKEIIEVIL 1564
>sp|Q17WX4|HTPX_HELAH Protease HtpX homolog OS=Helicobacter acinonychis (strain Sheeba)
GN=htpX PE=3 SV=1
Length = 309
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 86/202 (42%), Gaps = 24/202 (11%)
Query: 248 NFKYPITIIDDPLINAFVF----PDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHV 303
NF+ + II+ P +NAF + I + + + + D EL V++HELSH +
Sbjct: 117 NFEPKLYIINAPYMNAFASGWNETNSLIALTSALIERLDRD-ELKAVIAHELSHIRHNDI 175
Query: 304 AEKLSNKTFLEILYIVPLMIIWFLL---PDLGAIVTQVLLDDLK------SIIFELPFER 354
+ I+ +V ++F + + GA + +++L L+ ++I ++ R
Sbjct: 176 RLTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLAKMILLVLQIVLPFLTLILQMYLSR 235
Query: 355 EMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGP 414
E AD F + + M ++ + + D + ++++ T+
Sbjct: 236 TREYMADSGAAFLMHDSKPM--------IRALQKISNDYKEND--YKEIDTNSTRSAAYL 285
Query: 415 KMEEYLSTHPSHENRANNLESK 436
E STHPS +NR +L +
Sbjct: 286 FNAEMFSTHPSIKNRIQSLSRR 307
>sp|A9M3Q1|HTPX_NEIM0 Protease HtpX homolog OS=Neisseria meningitidis serogroup C (strain
053442) GN=htpX PE=3 SV=1
Length = 279
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 87/217 (40%), Gaps = 58/217 (26%)
Query: 248 NFKYP-ITIIDDPLINAFVFPDGR----IFMFTGMFQLCQTDDELATVLSHELSH----- 297
N K P + I P NAF R I + TG+ T DE+ VL+HE++H
Sbjct: 91 NLKTPEVAIYHSPEPNAFATGASRNSSLIAVSTGLLD-HMTRDEVEAVLAHEMAHVGNGD 149
Query: 298 ----TLLKHVAEKLSNKTFLEILYIVPLMII------------WFLLPDLGAIVTQVLLD 341
TL++ V TF+ L + +I +FL+ ++V Q+L
Sbjct: 150 MVTLTLIQGVV-----NTFVVFLSRIIANLIARNNDGSQSQGTYFLV----SMVFQILFG 200
Query: 342 DLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQ 401
L S+I + F R+ E AD A VG M A ++ P+
Sbjct: 201 FLASLIV-MWFSRQREYRADAG-------------AAKLVGAPKMISALQRLKGNPV--- 243
Query: 402 KMALKETQDQV---GPKMEEYLSTHPSHENRANNLES 435
L E + + G + LSTHPS +NR L+S
Sbjct: 244 --DLPEEMNAMGIAGDTRDSLLSTHPSLDNRIARLKS 278
>sp|B4RKA0|HTPX_NEIG2 Protease HtpX homolog OS=Neisseria gonorrhoeae (strain NCCP11945)
GN=htpX PE=3 SV=1
Length = 279
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 87/217 (40%), Gaps = 58/217 (26%)
Query: 248 NFKYP-ITIIDDPLINAFVFPDGR----IFMFTGMFQLCQTDDELATVLSHELSH----- 297
N K P + I P NAF R I + TG+ T DE+ VL+HE++H
Sbjct: 91 NLKTPEVAIYHSPEPNAFATGASRNSSLIAVSTGLLD-HMTRDEVEAVLAHEMAHVGNGD 149
Query: 298 ----TLLKHVAEKLSNKTFLEILYIVPLMII------------WFLLPDLGAIVTQVLLD 341
TL++ V TF+ L + +I +FL+ ++V Q+L
Sbjct: 150 MVTLTLIQGVV-----NTFVVFLSRIIANLIARNNDGSQSQGTYFLV----SMVFQILFG 200
Query: 342 DLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQ 401
L S+I + F R+ E AD A VG M A ++ P+
Sbjct: 201 FLASLIV-MWFSRQREYRADAG-------------AAKLVGAPKMISALQRLKGNPV--- 243
Query: 402 KMALKETQDQV---GPKMEEYLSTHPSHENRANNLES 435
L E + + G + LSTHPS +NR L+S
Sbjct: 244 --DLPEEMNAMGIAGDTRDSLLSTHPSLDNRIARLKS 278
>sp|Q5F9J4|HTPX_NEIG1 Protease HtpX homolog OS=Neisseria gonorrhoeae (strain ATCC 700825
/ FA 1090) GN=htpX PE=3 SV=1
Length = 279
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 87/217 (40%), Gaps = 58/217 (26%)
Query: 248 NFKYP-ITIIDDPLINAFVFPDGR----IFMFTGMFQLCQTDDELATVLSHELSH----- 297
N K P + I P NAF R I + TG+ T DE+ VL+HE++H
Sbjct: 91 NLKTPEVAIYHSPEPNAFATGASRNSSLIAVSTGLLD-HMTRDEVEAVLAHEMAHVGNGD 149
Query: 298 ----TLLKHVAEKLSNKTFLEILYIVPLMII------------WFLLPDLGAIVTQVLLD 341
TL++ V TF+ L + +I +FL+ ++V Q+L
Sbjct: 150 MVTLTLIQGVV-----NTFVVFLSRIIANLIARNNDGSQSQGTYFLV----SMVFQILFG 200
Query: 342 DLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQ 401
L S+I + F R+ E AD A VG M A ++ P+
Sbjct: 201 FLASLIV-MWFSRQREYRADAG-------------AAKLVGAPKMISALQRLKGNPV--- 243
Query: 402 KMALKETQDQV---GPKMEEYLSTHPSHENRANNLES 435
L E + + G + LSTHPS +NR L+S
Sbjct: 244 --DLPEEMNAMGIAGDTRDSLLSTHPSLDNRIARLKS 278
>sp|A1KT72|HTPX_NEIMF Protease HtpX homolog OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=htpX PE=3
SV=1
Length = 279
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 87/217 (40%), Gaps = 58/217 (26%)
Query: 248 NFKYP-ITIIDDPLINAFVFPDGR----IFMFTGMFQLCQTDDELATVLSHELSH----- 297
N K P + I P NAF R I + TG+ T DE+ VL+HE++H
Sbjct: 91 NLKTPEVAIYHSPEPNAFATGASRNSSLIAVSTGLLD-HMTRDEVEAVLAHEMAHVGNGD 149
Query: 298 ----TLLKHVAEKLSNKTFLEILYIVPLMII------------WFLLPDLGAIVTQVLLD 341
TL++ V TF+ L + +I +FL+ ++V Q+L
Sbjct: 150 MVTLTLIQGVV-----NTFVVFLSRIIANLIARNNDGSQSQGTYFLV----SMVFQILFG 200
Query: 342 DLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQ 401
L S+I + F R+ E AD A VG M A ++ P+
Sbjct: 201 FLASLIV-MWFSRQREYRADAG-------------AAKLVGAPKMISALQRLKGNPV--- 243
Query: 402 KMALKETQDQV---GPKMEEYLSTHPSHENRANNLES 435
L E + + G + LSTHPS +NR L+S
Sbjct: 244 --DLPEEMNAMGIAGDTRDSLLSTHPSLDNRIARLKS 278
>sp|Q9K006|HTPX_NEIMB Protease HtpX homolog OS=Neisseria meningitidis serogroup B (strain
MC58) GN=htpX PE=3 SV=2
Length = 279
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 87/217 (40%), Gaps = 58/217 (26%)
Query: 248 NFKYP-ITIIDDPLINAFVFPDGR----IFMFTGMFQLCQTDDELATVLSHELSH----- 297
N K P + I P NAF R I + TG+ T DE+ VL+HE++H
Sbjct: 91 NLKTPEVAIYHSPEPNAFATGASRNSSLIAVSTGLLD-HMTRDEVEAVLAHEMAHVGNGD 149
Query: 298 ----TLLKHVAEKLSNKTFLEILYIVPLMII------------WFLLPDLGAIVTQVLLD 341
TL++ V TF+ L + +I +FL+ ++V Q+L
Sbjct: 150 MVTLTLIQGVV-----NTFVVFLSRIIANLIARNNDGSQSQGTYFLV----SMVFQILFG 200
Query: 342 DLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQ 401
L S+I + F R+ E AD A VG M A ++ P+
Sbjct: 201 FLASLIV-MWFSRQREYRADAG-------------AAKLVGAPKMISALQRLKGNPV--- 243
Query: 402 KMALKETQDQV---GPKMEEYLSTHPSHENRANNLES 435
L E + + G + LSTHPS +NR L+S
Sbjct: 244 --DLPEEMNAMGIAGDTRDSLLSTHPSLDNRIARLKS 278
>sp|Q9JV19|HTPX_NEIMA Protease HtpX homolog OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=htpX PE=3 SV=1
Length = 279
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 87/217 (40%), Gaps = 58/217 (26%)
Query: 248 NFKYP-ITIIDDPLINAFVFPDGR----IFMFTGMFQLCQTDDELATVLSHELSH----- 297
N K P + I P NAF R I + TG+ T DE+ VL+HE++H
Sbjct: 91 NLKTPEVAIYHSPEPNAFATGASRNSSLIAVSTGLLD-HMTRDEVEAVLAHEMAHVGNGD 149
Query: 298 ----TLLKHVAEKLSNKTFLEILYIVPLMII------------WFLLPDLGAIVTQVLLD 341
TL++ V TF+ L + +I +FL+ ++V Q+L
Sbjct: 150 MVTLTLIQGVV-----NTFVVFLSRIIANLIARNNDGSQSQGTYFLV----SMVFQILFG 200
Query: 342 DLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQ 401
L S+I + F R+ E AD A VG M A ++ P+
Sbjct: 201 FLASLIV-MWFSRQREYRADAG-------------AAKLVGAPKMISALQRLKGNPV--- 243
Query: 402 KMALKETQDQV---GPKMEEYLSTHPSHENRANNLES 435
L E + + G + LSTHPS +NR L+S
Sbjct: 244 --DLPEEMNAMGIAGDTRDSLLSTHPSLDNRIARLKS 278
>sp|P13605|FMOD_BOVIN Fibromodulin OS=Bos taurus GN=FMOD PE=1 SV=2
Length = 376
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 16/82 (19%)
Query: 185 ITGRQKFIIVKPNQLNDVTQIAYDN-----FIEEHGNQVLPLGHPAYKRVG-AVVKRLID 238
+ R K++ + NQ++ + + +DN +I HGNQ+ +VG V +L
Sbjct: 103 VPSRMKYVYFQNNQISSIQEGVFDNATGLLWIALHGNQI------TSDKVGKKVFSKLRH 156
Query: 239 ANKVYMEHNNFKYPITIIDDPL 260
++Y++HNN +T I PL
Sbjct: 157 LERLYLDHNN----LTRIPSPL 174
>sp|Q9HJV2|HTPX_THEAC Protease HtpX homolog OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=htpX PE=3 SV=1
Length = 317
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 39/228 (17%)
Query: 156 KHQDKIAGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKP-NQLNDVTQIAYDNFI--E 212
K + GI + +IG IY L+ I +++ P + D+ Q + ++
Sbjct: 9 KLSSLLMGIAIFAIGFGIIYAILYYIGLNIGAIALLMVLLPIFIIMDIVQWLFGPYMIGA 68
Query: 213 EHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYP---ITIIDDPLINAFVF--- 266
+ L P Y + ++V + +NN + P I +D P NAF +
Sbjct: 69 VYRTHKLQPTEPEYNMLTSIVSEV-------ARNNNIRMPEVYIAEVDMP--NAFAYGSP 119
Query: 267 -PDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIW 325
RI + G+ ++ + DE+ V+ HE+ H L+H + L + ++P +I +
Sbjct: 120 IAGRRIAVTRGLLRILE-PDEIKAVIGHEMGH--LRH-----RDVEMLLAIGLIPTLIFY 171
Query: 326 FLLPDL---------GAIVTQVLLDDLKSIIFE---LPFEREMETEAD 361
F L G IV ++ S +F L F R E+ AD
Sbjct: 172 FGYTLLFSGERGRNAGGIVLLAIIAMAASFLFRFLILAFNRMRESYAD 219
>sp|Q8THH5|HTPX1_METAC Protease HtpX homolog 1 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=htpX1 PE=3 SV=1
Length = 286
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 92/232 (39%), Gaps = 51/232 (21%)
Query: 235 RLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGR------IFMFTGMFQLCQTDDELA 288
R++D + ++ N K + ++D + NAF GR + + TG+ L + +E+
Sbjct: 72 RIVDG--LALKANIPKPKVYVVDSGMPNAFA--TGRNPQHAAVAVTTGILNLL-SYEEIE 126
Query: 289 TVLSHELSH-----TLLKHVAEKLSNKTFLEILYIVPLMIIWFLL--------PDLGAI- 334
VL+HEL+H TL+ VA TF ++ ++ W + D G I
Sbjct: 127 GVLAHELAHVKNRDTLISAVAA-----TFAGVITMLATWARWAAIFGGFGGRDDDNGGII 181
Query: 335 --VTQVLLDDLKSIIFELPFEREMETEADE--SIIFELPFEREMETEADEVGLKLMARAC 390
+ +L L + + +L R E ADE + I + P+ E E G +
Sbjct: 182 GFIVMAVLAPLAATLIQLAISRSREFAADEEGARISKKPWALADALEKLEYGNSHFQPSI 241
Query: 391 YDVRVAPLFWQKMALKETQDQV-------GPKMEEYLSTHPSHENRANNLES 435
DV+ KET + G ++ THP + R L +
Sbjct: 242 RDVQA----------KETSAHMFIVNPLKGGTLQSLFRTHPVTDERVKRLRA 283
>sp|O26669|HTPX_METTH Protease HtpX homolog OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=htpX PE=3 SV=1
Length = 258
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 15/80 (18%)
Query: 253 ITIIDDPLINAFVF----PDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLS 308
+ I + L NAF F DGR+ + G+ L ++EL VL HE+SH +KH S
Sbjct: 103 VGIAEIALPNAFAFGRTKADGRVCVTRGILNLLD-EEELRAVLGHEISH--IKH-----S 154
Query: 309 NKTFLEILYIVPLM---IIW 325
+ + ++ VPL+ I W
Sbjct: 155 DMIVMTLVSAVPLICYYIFW 174
>sp|Q10418|MESD_LEUME Mesentericin-Y105 transport/processing ATP-binding protein MesD
OS=Leuconostoc mesenteroides GN=mesD PE=3 SV=1
Length = 722
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 104 TSQPKNALPGFIYLIFKPILRVVGAIVIARISRKWWSKL-SPDQKKIILSQIKKHQDKIA 162
T + K +L FI +I + L V+ IVIA + S L S + II + I +
Sbjct: 152 TKEKKRSLTSFIPVITRQKLLVIN-IVIAALLVTLVSILGSYYLQGIIDTYIPNNMKNTL 210
Query: 163 GITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLG 222
GI S+GL + Y L + R +IV +L+ ++Y I E LP+
Sbjct: 211 GIV--SLGLIFAYVIQQLLSY---ARDYLLIVMGQRLSIDIILSYIKHIFE-----LPMS 260
Query: 223 HPAYKRVGAVVKRLIDANKV 242
A +R G +V R DAN +
Sbjct: 261 FFATRRTGEIVSRFTDANAI 280
>sp|A0LHQ9|HTPX_SYNFM Protease HtpX homolog OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=htpX PE=3 SV=1
Length = 282
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 19/134 (14%)
Query: 248 NFKYP-ITIIDDPLINAFVF---PDGRIFMFT-GMFQLCQTDDELATVLSHELSHTLLKH 302
N P + +I + NAF P+ + T G++++ T DE+ VL+HEL+H +
Sbjct: 82 NLPMPRVYLIPESAPNAFATGRNPENAVIAVTEGLWRIL-TPDEIRGVLAHELAHVKNRD 140
Query: 303 VAEKLSNKTFLEILYIVPLMIIWFLLPDLG-------------AIVTQVLLDDLKSIIFE 349
+ T ++ I+ M W L G +V +L + +++ +
Sbjct: 141 ILVSSIAATLAGVVMILARMAQWGALFGGGRSSSDEDSGGGMLGLVVTAILAPIAAMLIQ 200
Query: 350 LPFEREMETEADES 363
L R E ADE+
Sbjct: 201 LAISRSREYLADET 214
>sp|Q04183|TR120_YEAST Trafficking protein particle complex II-specific subunit 120
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TRS120 PE=1 SV=1
Length = 1289
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 218 VLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFM 273
V+P+GH K V++L + N++++ +T ID P+ FP G++F
Sbjct: 20 VIPIGHWTRKEFNNAVQKLSEFNEIHLSD------VTPIDSPIFTPQGFPHGKLFF 69
>sp|Q2PPJ7|RGPA2_HUMAN Ral GTPase-activating protein subunit alpha-2 OS=Homo sapiens
GN=RALGAPA2 PE=1 SV=2
Length = 1873
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 10 DNLDDLLRYIGHTSPECLETLDTPRNIPA-SRSSINTELEQDTIGCIL 56
D LD LL IGHTSPECL N P+ + +N + E++ I IL
Sbjct: 1518 DVLDKLLENIGHTSPECLLPSQLNLNEPSLTPCGMNYDQEKEIIEVIL 1565
>sp|Q9Q8J2|A18_MYXVL Transcript termination protein A18 OS=Myxoma virus (strain
Lausanne) GN=m108R PE=3 SV=1
Length = 478
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 207 YDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFV 265
YD F+EE G + LG K AVVK L+ K ++ + Y T +D P +++ V
Sbjct: 337 YDKFVEEFGTDYVYLGDAKNKDTSAVVKSLLQKKK-FIFVSTSHYSGTGLDIPSLDSLV 394
>sp|Q06828|FMOD_HUMAN Fibromodulin OS=Homo sapiens GN=FMOD PE=1 SV=2
Length = 376
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 185 ITGRQKFIIVKPNQLNDVTQIAYDN-----FIEEHGNQVLPLGHPAYKRVG-AVVKRLID 238
+ R K++ + NQ+ + + +DN +I HGNQ+ +VG V +L
Sbjct: 103 VPSRMKYVYFQNNQITSIQEGVFDNATGLLWIALHGNQI------TSDKVGRKVFSKLRH 156
Query: 239 ANKVYMEHNNF 249
++Y++HNN
Sbjct: 157 LERLYLDHNNL 167
>sp|O25582|HTPX_HELPY Protease HtpX homolog OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=htpX PE=3 SV=2
Length = 310
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 36/208 (17%)
Query: 249 FKYPITIIDDPLINAFVF----PDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVA 304
F+ + II+ P +NAF + I + + + + D EL V++HELSH +
Sbjct: 119 FEPKLYIINAPYMNAFASGWNESNSLIALTSALIERLDRD-ELKAVIAHELSHIRHNDIR 177
Query: 305 EKLSNKTFLEILYIVPLMIIWFLL---PDLGAIVTQVLLDDLKSIIFELPFEREMETEAD 361
+ I+ +V ++F + + GA + +++L L+ I LPF
Sbjct: 178 LTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILWVLQII---LPF--------- 225
Query: 362 ESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQ------DQVGPK 415
+++ ++ R E AD LM +D + QK++ T D+ +
Sbjct: 226 LTLLLQMYLSRTREYMADSGAAFLM----HDNKPMIRALQKISNDYTNNDYKEIDKNSTR 281
Query: 416 MEEYL------STHPSHENRANNLESKM 437
YL STHPS +NR +L ++
Sbjct: 282 SAAYLFNAEMFSTHPSIKNRIQSLRKRV 309
>sp|Q9ZKS4|HTPX_HELPJ Protease HtpX homolog OS=Helicobacter pylori (strain J99) GN=htpX
PE=3 SV=1
Length = 310
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 36/208 (17%)
Query: 249 FKYPITIIDDPLINAFVF----PDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVA 304
F+ + II+ P +NAF + I + + + + D EL V++HELSH +
Sbjct: 119 FEPKLYIINAPYMNAFASGWDESNSLIALTSALIERLDRD-ELKAVIAHELSHIRHNDIR 177
Query: 305 EKLSNKTFLEILYIVPLMIIWFLL---PDLGAIVTQVLLDDLKSIIFELPFEREMETEAD 361
+ I+ +V ++F + + GA + +++L L+ I LPF
Sbjct: 178 LTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILWVLQII---LPF--------- 225
Query: 362 ESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQ------DQVGPK 415
+++ ++ R E AD LM +D + QK++ T D+ +
Sbjct: 226 LTLLLQMYLSRTREYMADSGAAFLM----HDNKPMIRALQKISNDYTNNDYKEIDKNSTR 281
Query: 416 MEEYL------STHPSHENRANNLESKM 437
YL STHPS +NR +L ++
Sbjct: 282 SAAYLFNAEMFSTHPSIKNRIQSLRKRV 309
>sp|B2UU75|HTPX_HELPS Protease HtpX homolog OS=Helicobacter pylori (strain Shi470)
GN=htpX PE=3 SV=1
Length = 310
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 28/204 (13%)
Query: 249 FKYPITIIDDPLINAFVF----PDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVA 304
F+ + II P +NAF + I + + + + D EL V++HELSH +
Sbjct: 119 FEPKLYIIKAPYMNAFASGWNESNSLIALTSALIERLDRD-ELKAVIAHELSHIRHNDIR 177
Query: 305 EKLSNKTFLEILYIVPLMIIWFLL---PDLGAIVTQVLLDDLKSIIFELPFEREMETEAD 361
+ I+ +V ++F + + GA + +++L L+ I LPF
Sbjct: 178 LTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILLVLQII---LPF--------- 225
Query: 362 ESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQ--DQVGPKMEEY 419
+++ ++ R E AD LM +R A + + DQ + Y
Sbjct: 226 LTLLLQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYANNDYKGVDQNSTRSAAY 285
Query: 420 L------STHPSHENRANNLESKM 437
L STHPS +NR +L ++
Sbjct: 286 LFSAEMFSTHPSIKNRIQSLSRRV 309
>sp|B4SE07|PSD_PELPB Phosphatidylserine decarboxylase proenzyme OS=Pelodictyon
phaeoclathratiforme (strain DSM 5477 / BU-1) GN=psd PE=3
SV=1
Length = 212
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 141 KLSPDQKKIILSQ-------IKKHQDKIAGITLTSIGLAYIYYFLHLETCPITGRQKFII 193
+++PD+K+IIL+ ++K IAG T T + + +H+ P++G+ +
Sbjct: 55 RVAPDEKRIILAPADGKILLVQKQNGNIAGKTSTLVSIFMSPLNVHVNRVPLSGKVTRLH 114
Query: 194 VKPNQLNDVTQIAYDN 209
+P Q +A+DN
Sbjct: 115 YRPGQF----LMAFDN 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,523,399
Number of Sequences: 539616
Number of extensions: 7023164
Number of successful extensions: 17271
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 17210
Number of HSP's gapped (non-prelim): 59
length of query: 475
length of database: 191,569,459
effective HSP length: 121
effective length of query: 354
effective length of database: 126,275,923
effective search space: 44701676742
effective search space used: 44701676742
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)