RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy768
         (475 letters)



>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha,
           eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 27.1 bits (60), Expect = 1.6
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 5/33 (15%)

Query: 297 HTLLKHVAEKLSNKTF--LEILYIVPLMIIWFL 327
           +++L+HVAE L       LE L+       W  
Sbjct: 20  YSILRHVAEVLEYTKDEQLESLFQ---RTAWVF 49


>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD
           {Bacillus subtilis [TaxId: 1423]}
          Length = 145

 Score = 26.8 bits (58), Expect = 3.4
 Identities = 15/117 (12%), Positives = 32/117 (27%), Gaps = 19/117 (16%)

Query: 52  IGCILSCDKKYSTCLNFQITGHQDKHLTRVLFHQSANHQLQVFNIRVLRCFHTSQPKNAL 111
           +G ++  D +          G     +        A    +  +I V     +   K   
Sbjct: 26  VGAVVVKDGQIVGMGAHLKYGEAHAEVH---AIHMAGAHAEGADIYVTLEPCSHYGKTP- 81

Query: 112 PGFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAGITLTS 168
                            I+ + I R + +   P+   +    I   ++  AGI +  
Sbjct: 82  ------------PCAELIINSGIKRVFVAMRDPN-PLVAGRGISMMKE--AGIEVRE 123


>d1lm6a_ d.167.1.1 (A:) Peptide deformylase {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 202

 Score = 26.7 bits (58), Expect = 5.4
 Identities = 12/114 (10%), Positives = 29/114 (25%), Gaps = 2/114 (1%)

Query: 202 VTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLI 261
           +  +   N +EE           A      +V   +    +            +     +
Sbjct: 84  IIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVP--GYV 141

Query: 262 NAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEI 315
                     F   G     +     + V+ HE+ H       ++++ K    +
Sbjct: 142 VRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAV 195


>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 144

 Score = 25.9 bits (57), Expect = 7.4
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 11/51 (21%)

Query: 139 WSKLSPDQKKII--------LSQIKKHQD---KIAGITLTSIGLAYIYYFL 178
           WS LS D+K  +         +++ +  +    + G  +  IG   +    
Sbjct: 45  WSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIW 95


>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 436

 Score = 26.3 bits (57), Expect = 9.0
 Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 4/35 (11%)

Query: 132 ARISRKWWSKLSPDQKKIIL----SQIKKHQDKIA 162
           AR +      +S + +  IL      +K +   I 
Sbjct: 12  ARKAGNILKTISNEGRSDILYKIHDALKANAHAIE 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0644    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,765,190
Number of extensions: 84468
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 9
Length of query: 475
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 386
Effective length of database: 1,185,626
Effective search space: 457651636
Effective search space used: 457651636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.1 bits)