BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7680
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 26 DPEPFLENPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRN 85
+ E FL+ PHY S ++L + P++ K+H +G+S++ R+L ALQISRN S RN
Sbjct: 30 EDESFLQQPHYASQEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRS-RN 88
Query: 86 LLKPMFKYVANIHGDEV 102
LL P KY+AN+HGDE
Sbjct: 89 LLTPPVKYIANMHGDET 105
>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
Length = 426
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 42 LTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDE 101
+ FL AQ S LHSIGKSV+ R+LW L + R R + P FKYVAN+HGDE
Sbjct: 11 MEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRFPKEHR-IGIPEFKYVANMHGDE 69
Query: 102 V 102
Sbjct: 70 T 70
>pdb|1QMU|A Chain A, Duck Carboxypeptidase D Domain Ii
pdb|1H8L|A Chain A, Duck Carboxypeptidase D Domain Ii In Complex With Gemsa
Length = 380
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 39 FDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIH 98
F ++ FL A + PS +L+S+GKSV+ R+L+ ++IS N +P FKY+ N+H
Sbjct: 13 FSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGI-HEAGEPEFKYIGNMH 71
Query: 99 GDEV 102
G+EV
Sbjct: 72 GNEV 75
>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
(kininase I) Catalytic Domain
Length = 439
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 39 FDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIH 98
+D+L + L + P +++SIG+SV+ R L+ L+ S + L+P KYV N+H
Sbjct: 9 YDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFSDHPGI-HEPLEPEVKYVGNMH 67
Query: 99 GDEV 102
G+E
Sbjct: 68 GNEA 71
>pdb|3PRT|A Chain A, Mutant Of The Carboxypeptidase T
Length = 323
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVA 95
Y +++E+ + A P+ VK SIGKS + R+LWA++IS NV + N +P Y A
Sbjct: 9 YHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDEN--EPEVLYTA 66
Query: 96 NIHGDE 101
H E
Sbjct: 67 LHHARE 72
>pdb|3V38|A Chain A, Carboxypeptidase T Mutant L254n
Length = 326
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVA 95
Y +++E+ + A P+ VK SIGKS + R+LWA++IS NV + N +P Y A
Sbjct: 9 YHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDEN--EPEVLYTA 66
Query: 96 NIHGDE 101
H E
Sbjct: 67 LHHARE 72
>pdb|1OBR|A Chain A, Carboxypeptidase T
pdb|3V7Z|A Chain A, Carboxypeptidase T With Gemsa
pdb|4DUK|A Chain A, Carboxypeptidase T With L-benzylsuccinic Acid
Length = 326
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVA 95
Y +++E+ + A P+ VK SIGKS + R+LWA++IS NV + N +P Y A
Sbjct: 9 YHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDEN--EPEVLYTA 66
Query: 96 NIHGDE 101
H E
Sbjct: 67 LHHARE 72
>pdb|3QNV|A Chain A, Carboxypeptidase T
pdb|4DJL|A Chain A, Carboxypeptidase T With N-sulfamoyl-l-phenylalanine
Length = 323
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVA 95
Y +++E+ + A P+ VK SIGKS + R+LWA++IS NV + N +P Y A
Sbjct: 9 YHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDEN--EPEVLYTA 66
Query: 96 NIHGDE 101
H E
Sbjct: 67 LHHARE 72
>pdb|1BAV|A Chain A, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|B Chain B, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|C Chain C, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|D Chain D, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
Length = 309
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQIS 77
Y + DE+ F+ Q+P V IG+S + R ++ L+ S
Sbjct: 12 YHTLDEIYDFMDLLVAQHPELVSKLQIGRSYEGRPIYVLKFS 53
>pdb|1HDU|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HEE|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
pdb|1HEE|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
pdb|1HEE|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
pdb|1HEE|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
pdb|1IY7|A Chain A, Crystal Structure Of Cpa And Sulfamide-based Inhibitor
Complex
pdb|5CPA|A Chain A, Refined Crystal Structure Of Carboxypeptidase A At 1.54
Angstroms Resolution.
pdb|6CPA|A Chain A, Crystal Structure Of The Complex Of Carboxypeptidase A
With A Strongly Bound Phosphonate In A New Crystalline
Form: Comparison With Structures Of Other Complexes
pdb|7CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase
A- Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|8CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase
A- Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|3CPA|A Chain A, X-Ray Crystallographic Investigation Of Substrate
Binding To Carboxypeptidase A At Subzero Temperature
pdb|4CPA|A Chain A, Refined Crystal Structure Of The Potato Inhibitor
Complex Of Carboxypeptidase A At 2.5 Angstroms
Resolution
pdb|4CPA|B Chain B, Refined Crystal Structure Of The Potato Inhibitor
Complex Of Carboxypeptidase A At 2.5 Angstroms
Resolution
Length = 307
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQIS 77
Y + DE+ F+ Q+P V IG+S + R ++ L+ S
Sbjct: 12 YHTLDEIYDFMDLLVAQHPELVSKLQIGRSYEGRPIYVLKFS 53
>pdb|1EE3|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 2 Mm Chloride In Monoclinic
Crystal Form
pdb|1ELL|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 0.25 M Chloride In Monoclinic
Crystal Form.
pdb|1ELM|P Chain P, Cadmium-Substituted Bovine Pacreatic Carboxypeptidase A
(Alfa-Form) At Ph 5.5 And 2 Mm Chloride In Monoclinic
Crystal Form.
pdb|1ZLH|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Bovine Carboxypeptidase A
pdb|2ABZ|A Chain A, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|2ABZ|B Chain B, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|1ARM|A Chain A, Carboxypeptidase A With Zn Replaced By Hg
pdb|1YME|A Chain A, Structure Of Carboxypeptidase
pdb|3I1U|A Chain A, Carboxypeptidase A Inhibited By A Thiirane
Mechanism-Based Inactivator
pdb|3HLP|A Chain A, Carboxypeptidase A Liganded To An Organic
Small-Molecule: Conformational Changes
pdb|3HLP|B Chain B, Carboxypeptidase A Liganded To An Organic
Small-Molecule: Conformational Changes
pdb|3HUV|A Chain A, Carboxypeptidase A Liganded To An Organic
Small-Molecule: Conformational Changes
Length = 309
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQIS 77
Y + DE+ F+ ++P V IG+S + R ++ L+ S
Sbjct: 12 YHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFS 53
>pdb|3FX6|A Chain A, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|C Chain C, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|E Chain E, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FVL|A Chain A, Crystallogic Studies On The Complex Of Carboxypeptidase
A With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|C Chain C, Crystallogic Studies On The Complex Of Carboxypeptidase
A With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|E Chain E, Crystallogic Studies On The Complex Of Carboxypeptidase
A With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
Length = 307
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQIS 77
Y + DE+ F+ ++P V IG+S + R ++ L+ S
Sbjct: 12 YHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFS 53
>pdb|1HDQ|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase
A Complexed With D-N-Hydroxyaminocarbonyl Phenylalanine
At 2.3 A
pdb|2CTB|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
pdb|2CTC|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
Length = 307
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQIS 77
Y + DE+ F+ ++P V IG+S + R ++ L+ S
Sbjct: 12 YHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFS 53
>pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase A, Proproteinase
E, And Chymotrypsinogen C
pdb|3KGQ|A Chain A, Carboxypeptidase A Liganded To An Organic
Small-Molecule: Conformational Changes
Length = 309
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQIS 77
Y + DE+ F+ ++P V IG+S + R ++ L+ S
Sbjct: 12 YHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFS 53
>pdb|1CPX|A Chain A, Beta Form Of Carboxypeptidase A (Residues 3-307) From
Bovine Pancreas In An Orthorhombic Crystal Form With
Two Zinc Ions In The Active Site.
pdb|1F57|A Chain A, Carboxypeptidase A Complex With D-Cysteine At 1.75 A
pdb|1M4L|A Chain A, Structure Of Native Carboxypeptidase A At 1.25
Resolution
pdb|1ARL|A Chain A, Carboxypeptidase A With Zn Removed
pdb|2RFH|A Chain A, Crystal Structure Analysis Of
Cpa-2-Benzyl-3-Nitropropanoic Acid Complex
Length = 307
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQIS 77
Y + DE+ F+ ++P V IG+S + R ++ L+ S
Sbjct: 12 YHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFS 53
>pdb|1CBX|A Chain A, Crystal Structure Of The Complex Between
Carboxypeptidase A And The Biproduct Analog Inhibitor
L-Benzylsuccinate At 2.0 Angstroms Resolution
pdb|1CPS|A Chain A, Structural Comparison Of Sulfodiimine And Sulfonamide
Inhibitors In Their Complexes With Zinc Enzymes
Length = 307
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQIS 77
Y + DE+ F+ ++P V IG+S + R ++ L+ S
Sbjct: 12 YHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFS 53
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino
Acid Aminotransferase (Tm0831) From Thermotoga Maritima
At 2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino
Acid Aminotransferase (Tm0831) From Thermotoga Maritima
At 2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino
Acid Aminotransferase (Tm0831) From Thermotoga Maritima
At 2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino
Acid Aminotransferase (Tm0831) From Thermotoga Maritima
At 2.15 A Resolution
Length = 285
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 30 FLENPHYLSFDELTKFLVAAAQQNPSKVKL 59
F P LSFDE TK L A A + +V++
Sbjct: 69 FFNLPLSLSFDEFTKVLKAGADEFKQEVRI 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,766,351
Number of Sequences: 62578
Number of extensions: 84610
Number of successful extensions: 195
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 19
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)