Query psy7680
Match_columns 102
No_of_seqs 133 out of 1022
Neff 7.4
Searched_HMMs 46136
Date Sat Aug 17 00:41:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06245 M14_CPD_III The third 99.8 8.2E-20 1.8E-24 139.2 8.8 67 35-102 1-67 (363)
2 cd03869 M14_CPX_like Peptidase 99.8 1.7E-19 3.8E-24 138.9 9.0 68 34-102 3-70 (405)
3 cd03865 M14_CPE_H Peptidase M1 99.8 2.6E-19 5.7E-24 137.8 9.0 68 34-102 3-70 (402)
4 cd03863 M14_CPD_II The second 99.8 3.9E-19 8.5E-24 136.0 8.8 68 34-102 4-71 (375)
5 cd03867 M14_CPZ Peptidase M14- 99.8 4.2E-19 9.1E-24 136.5 8.4 66 36-102 1-66 (395)
6 cd06246 M14_CPB2 Peptidase M14 99.8 5.8E-19 1.3E-23 131.6 8.9 66 33-102 2-67 (300)
7 cd03871 M14_CPB Peptidase M14 99.8 5.5E-19 1.2E-23 131.8 8.7 66 32-102 2-67 (300)
8 cd06905 Peptidase_M14-like_8 A 99.8 7.4E-19 1.6E-23 133.9 8.9 69 33-102 1-69 (360)
9 cd06247 M14_CPO Peptidase M14 99.8 8.7E-19 1.9E-23 130.6 8.8 66 33-102 1-66 (298)
10 cd03868 M14_CPD_I The first ca 99.8 1E-18 2.2E-23 133.4 8.9 66 36-102 1-66 (372)
11 cd03866 M14_CPM Peptidase M14 99.8 1.1E-18 2.3E-23 133.6 8.9 68 34-102 3-70 (376)
12 cd06248 M14_CPA_CPB_like Pepti 99.8 1.4E-18 3E-23 129.8 8.9 68 33-102 1-68 (304)
13 cd03870 M14_CPA Peptidase M14 99.8 1.4E-18 3E-23 129.7 8.8 66 32-102 2-67 (301)
14 cd03864 M14_CPN Peptidase M14 99.8 1.4E-18 3.1E-23 133.5 8.4 66 36-102 1-66 (392)
15 cd03859 M14_CPT Peptidase M14- 99.8 5E-18 1.1E-22 126.1 9.2 67 34-102 2-68 (295)
16 cd03858 M14_CP_N-E_like Carbox 99.8 4.3E-18 9.4E-23 129.7 9.1 66 36-102 1-66 (374)
17 cd03872 M14_CPA6 Carboxypeptid 99.8 3.8E-18 8.3E-23 127.3 8.5 64 35-102 1-64 (300)
18 KOG2650|consensus 99.7 9.5E-18 2.1E-22 129.6 6.7 66 32-101 117-182 (418)
19 cd03860 M14_CP_A-B_like The Pe 99.7 5.6E-17 1.2E-21 120.3 8.8 63 36-102 1-63 (294)
20 smart00631 Zn_pept Zn_pept. 99.7 8.5E-17 1.8E-21 118.4 8.5 63 36-102 1-63 (277)
21 cd06242 Peptidase_M14-like_1_5 99.7 1.1E-16 2.4E-21 117.8 9.0 67 36-102 2-68 (268)
22 KOG2649|consensus 99.6 4.5E-16 9.7E-21 121.1 7.6 70 32-102 65-134 (500)
23 PF00246 Peptidase_M14: Zinc c 99.6 5.3E-15 1.1E-19 108.2 7.9 60 42-102 1-60 (279)
24 cd06227 Peptidase_M14-like_2 A 99.6 9E-15 2E-19 107.9 8.1 64 36-102 2-66 (272)
25 cd06237 M14_Nna1_like_3 A bact 99.5 1.1E-13 2.4E-18 100.8 7.3 60 35-102 6-65 (244)
26 cd06234 M14_Nna1_like_1 A bact 99.4 8.7E-13 1.9E-17 97.0 7.6 61 35-102 9-69 (263)
27 cd06241 Peptidase_M14-like_1_4 99.4 6.6E-13 1.4E-17 97.7 6.8 58 44-102 1-62 (266)
28 cd06908 M14_AGBL4_like Peptida 99.4 1E-12 2.2E-17 96.6 6.7 57 46-102 1-57 (261)
29 cd06226 M14_CPT_like Peptidase 99.3 1.3E-11 2.9E-16 92.0 6.3 50 53-102 1-56 (293)
30 cd06239 Peptidase_M14-like_1_2 99.2 3.2E-11 6.8E-16 87.4 5.8 46 49-102 2-47 (231)
31 cd03856 M14_Nna1_like Peptidas 99.1 2.5E-10 5.4E-15 84.2 6.3 57 37-102 11-67 (269)
32 cd06240 Peptidase_M14-like_1_3 99.0 6E-10 1.3E-14 82.5 4.2 45 58-102 1-71 (273)
33 cd06235 M14_Nna1_like_2 Subgro 98.9 2.1E-09 4.6E-14 78.8 6.3 50 53-102 9-59 (258)
34 cd06243 Peptidase_M14-like_1_6 98.9 1.7E-09 3.6E-14 78.6 4.9 41 62-102 1-43 (236)
35 cd03857 Peptidase_M14-like_1 P 98.9 2E-09 4.4E-14 77.3 5.1 41 62-102 1-45 (226)
36 cd06907 M14_AGBL2-3_like Pepti 98.9 3.9E-09 8.4E-14 77.7 6.0 49 54-102 11-60 (261)
37 cd06236 M14_AGBL5_like Peptida 98.8 1.8E-08 3.9E-13 75.6 5.8 47 56-102 15-81 (304)
38 cd06228 Peptidase_M14-like_3 A 98.7 1.3E-08 2.8E-13 77.2 4.2 39 60-102 4-42 (332)
39 cd06238 Peptidase_M14-like_1_1 98.6 3.5E-08 7.7E-13 73.0 3.2 41 62-102 1-62 (271)
40 PRK10602 murein peptide amidas 98.6 4.9E-08 1.1E-12 71.0 3.3 39 57-102 15-53 (237)
41 cd06244 Peptidase_M14-like_1_7 98.4 2.8E-07 6.1E-12 68.1 4.2 41 62-102 1-66 (268)
42 cd06232 Peptidase_M14-like_5 P 98.4 3.7E-07 8E-12 66.3 4.0 50 38-102 3-52 (240)
43 cd06906 M14_Nna1 Peptidase M14 98.3 1.1E-06 2.4E-11 65.3 5.3 56 47-102 5-66 (278)
44 cd06231 Peptidase_M14-like_4 A 98.0 9.8E-06 2.1E-10 58.9 5.2 43 55-102 13-56 (236)
45 cd03862 Peptidase_M14-like_7 A 97.2 0.00042 9E-09 51.5 3.9 31 67-102 8-38 (273)
46 COG2866 Predicted carboxypepti 96.1 0.0062 1.3E-07 47.1 3.4 38 56-99 120-158 (374)
47 KOG3641|consensus 95.5 0.018 3.8E-07 46.9 3.9 67 32-102 375-443 (650)
48 cd06250 M14_PaAOTO_like An unc 95.2 0.031 6.8E-07 42.9 4.2 36 61-102 4-41 (359)
49 cd06255 M14_ASTE_ASPA_like_5 A 94.6 0.045 9.9E-07 40.8 3.7 34 63-102 3-38 (293)
50 cd06252 M14_ASTE_ASPA_like_2 A 94.2 0.071 1.5E-06 40.1 4.0 28 68-102 21-48 (316)
51 cd06251 M14_ASTE_ASPA_like_1 A 94.2 0.064 1.4E-06 39.8 3.6 15 88-102 20-34 (287)
52 cd06233 Peptidase_M14-like_6 P 94.2 0.28 6.2E-06 36.7 7.1 59 37-101 3-64 (283)
53 cd03855 M14_ASTE Peptidase M14 92.5 0.14 3.1E-06 38.7 3.3 17 86-102 40-56 (322)
54 TIGR02994 ectoine_eutE ectoine 92.2 0.19 4.2E-06 38.2 3.6 15 88-102 47-61 (325)
55 PRK05324 succinylglutamate des 92.2 0.098 2.1E-06 39.8 2.0 17 86-102 45-61 (329)
56 COG2988 Succinylglutamate desu 91.4 0.15 3.2E-06 38.7 2.1 48 48-102 8-57 (324)
57 TIGR03242 arg_catab_astE succi 91.2 0.14 3E-06 38.7 1.9 16 87-102 40-55 (319)
58 cd06256 M14_ASTE_ASPA_like_6 A 91.0 0.14 3.1E-06 38.9 1.9 14 89-102 35-48 (327)
59 COG3608 Predicted deacylase [G 88.1 0.53 1.2E-05 36.1 3.0 15 88-102 48-62 (331)
60 cd06229 M14_Endopeptidase_I Pe 86.3 0.57 1.2E-05 34.1 2.2 16 65-80 1-16 (255)
61 PF10994 DUF2817: Protein of u 61.7 61 0.0013 25.0 7.4 59 37-101 3-64 (341)
62 PF13174 TPR_6: Tetratricopept 50.7 26 0.00057 16.1 2.7 18 38-55 15-32 (33)
63 PF00113 Enolase_C: Enolase, C 46.2 16 0.00035 27.5 2.1 27 35-62 131-157 (295)
64 COG1019 Predicted nucleotidylt 44.5 36 0.00078 23.5 3.4 42 38-79 59-101 (158)
65 TIGR03042 PS_II_psbQ_bact phot 43.7 25 0.00055 23.8 2.5 23 3-25 4-27 (142)
66 COG2913 OlmA Outer membrane li 40.5 47 0.001 22.6 3.5 38 5-44 11-48 (147)
67 PF11497 NADH_Oxid_Nqo15: NADH 40.4 1.1E+02 0.0023 20.2 5.5 43 36-78 10-73 (127)
68 PRK04151 IMP cyclohydrolase; P 40.0 71 0.0015 22.9 4.4 25 53-79 2-26 (197)
69 PF04350 PilO: Pilus assembly 37.4 49 0.0011 21.2 3.1 27 37-64 95-121 (144)
70 PF10686 DUF2493: Protein of u 36.7 85 0.0018 18.4 3.8 30 34-64 12-41 (71)
71 PF15243 ANAPC15: Anaphase-pro 34.0 46 0.00099 20.9 2.4 25 41-68 36-60 (92)
72 PF14483 Cut8_M: Cut8 dimerisa 33.3 47 0.001 17.3 2.0 21 36-56 9-29 (38)
73 PF11943 DUF3460: Protein of u 32.9 41 0.00089 19.5 1.9 18 40-57 5-22 (60)
74 PF01624 MutS_I: MutS domain I 32.8 43 0.00094 21.1 2.2 26 42-67 3-28 (113)
75 PTZ00378 hypothetical protein; 31.5 66 0.0014 26.4 3.5 25 37-61 326-351 (518)
76 COG0710 AroD 3-dehydroquinate 31.2 97 0.0021 22.6 4.1 36 32-67 125-160 (231)
77 TIGR03544 DivI1A_domain DivIVA 30.9 77 0.0017 15.8 2.6 19 35-53 16-34 (34)
78 PF09456 RcsC: RcsC Alpha-Beta 30.5 1.4E+02 0.0031 18.7 4.9 58 39-101 8-65 (92)
79 COG0148 Eno Enolase [Carbohydr 30.3 66 0.0014 25.6 3.2 25 36-61 259-283 (423)
80 PF13036 DUF3897: Protein of u 30.0 1E+02 0.0022 20.9 3.9 16 8-23 2-17 (180)
81 PF01764 Lipase_3: Lipase (cla 29.6 43 0.00094 21.0 1.9 29 38-67 46-74 (140)
82 COG2868 Predicted ribosomal pr 29.6 1E+02 0.0023 19.9 3.6 20 42-61 87-106 (109)
83 PF15144 DUF4576: Domain of un 28.6 1.3E+02 0.0028 18.5 3.7 19 6-24 10-28 (88)
84 PF00743 FMO-like: Flavin-bind 27.9 74 0.0016 25.8 3.3 23 32-54 76-98 (531)
85 TIGR01922 purO_arch IMP cycloh 27.8 1.4E+02 0.0031 21.4 4.3 25 53-79 2-26 (199)
86 TIGR02722 lp_ uncharacterized 27.6 2.1E+02 0.0046 19.8 6.1 14 7-20 8-21 (189)
87 PF14421 LmjF365940-deam: A di 26.6 2E+02 0.0043 20.6 4.8 39 36-76 154-192 (193)
88 cd06896 PX_PI3K_C2_gamma The p 26.4 74 0.0016 20.4 2.4 24 33-56 27-50 (101)
89 PF14784 ECIST_Cterm: C-termin 26.3 98 0.0021 20.5 3.1 28 34-61 94-121 (126)
90 PF04327 DUF464: Protein of un 26.2 1.2E+02 0.0025 18.9 3.3 18 42-59 86-103 (103)
91 KOG2670|consensus 25.3 94 0.002 24.4 3.2 30 32-62 268-297 (433)
92 COG3224 Uncharacterized protei 25.3 1.3E+02 0.0028 21.5 3.6 45 33-77 21-65 (195)
93 COG3500 Phage protein D [Gener 25.1 79 0.0017 24.6 2.8 37 43-79 156-201 (350)
94 PF00159 Hormone_3: Pancreatic 25.0 1.1E+02 0.0025 15.8 2.8 16 36-51 11-26 (36)
95 PF12164 SporV_AA: Stage V spo 24.4 1.3E+02 0.0029 18.6 3.3 24 41-65 58-81 (93)
96 PRK14553 hypothetical protein; 23.9 1.6E+02 0.0034 18.6 3.7 21 41-61 85-105 (108)
97 TIGR00269 conserved hypothetic 23.5 1.3E+02 0.0027 18.8 3.1 24 33-56 33-56 (104)
98 cd06889 PX_NoxO1 The phosphoin 22.4 76 0.0017 20.9 2.0 24 32-55 33-56 (121)
99 KOG0087|consensus 22.4 97 0.0021 22.6 2.7 24 32-55 95-118 (222)
100 PF04083 Abhydro_lipase: Parti 22.3 1.7E+02 0.0036 16.7 4.2 36 64-99 18-54 (63)
101 PF01083 Cutinase: Cutinase; 21.3 1.4E+02 0.0031 20.4 3.3 26 40-66 65-90 (179)
102 PF07538 ChW: Clostridial hydr 20.5 1.4E+02 0.003 15.1 2.6 18 60-77 15-32 (36)
103 KOG1399|consensus 20.4 4.5E+02 0.0098 21.0 6.4 21 34-54 84-104 (448)
104 PRK13576 3-dehydroquinate dehy 20.1 2.5E+02 0.0055 20.1 4.5 34 32-66 111-144 (216)
No 1
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=99.81 E-value=8.2e-20 Score=139.21 Aligned_cols=67 Identities=31% Similarity=0.545 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 35 ~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
+||+|+||.+||++|+++||+++++.+||+|+|||+|++++|+++++ ...++||.|+++|+|||||.
T Consensus 1 ~Yh~y~ei~~~l~~l~~~~p~i~~l~~IG~S~eGR~l~~l~Is~~~~-~~~~~kp~v~~~~giHg~E~ 67 (363)
T cd06245 1 RYHHYKELSEFLRGLTLNYPHITNLTSLGQSVEFRPILSLEISNKPN-NSEPEEPKIRFVAGIHGNAP 67 (363)
T ss_pred CCCCHHHHHHHHHHHHHHCCCceEEEEeeecCCCceEEEEEecCCCC-CCCCCCCEEEEECCccCCcH
Confidence 59999999999999999999999999999999999999999998664 45668999999999999995
No 2
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=99.80 E-value=1.7e-19 Score=138.92 Aligned_cols=68 Identities=31% Similarity=0.556 Sum_probs=63.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 34 PHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 34 ~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
.+||+|+||.+||++|+++||+++++.+||+|+|||+|++++|+++++ .+..+||.|+++|+|||||.
T Consensus 3 f~yh~y~em~~~L~~la~~yP~i~~l~sIGkS~EGR~L~~l~Is~~~~-~~~~~kP~v~~~g~iHgrE~ 70 (405)
T cd03869 3 FKHHNYKDMRQLMKVVNEMCPNITRIYNIGKSYQGLKLYAMEISDNPG-EHELGEPEFRYVAGMHGNEV 70 (405)
T ss_pred CccCCHHHHHHHHHHHHHHCCCceEEEEeEECcCCceEEEEEEecCCc-cccCCCCeEEEEcccCCCcH
Confidence 478999999999999999999999999999999999999999998765 45568999999999999994
No 3
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=99.80 E-value=2.6e-19 Score=137.84 Aligned_cols=68 Identities=32% Similarity=0.564 Sum_probs=63.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 34 PHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 34 ~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
.+||+|+||.+||++|+++||+++++.+||+|+|||+|++++|+++++ ...++||.|+++|+|||||.
T Consensus 3 f~Yh~y~e~~~~L~~l~~~~p~i~~l~~IG~S~eGR~I~~l~Is~~~~-~~~~~kP~v~i~g~iHg~E~ 70 (402)
T cd03865 3 FEYHRYPELREALVSVWLQCPSISRIYTVGRSFEGRELLVIEMSDNPG-EHEPGEPEFKYIGNMHGNEA 70 (402)
T ss_pred cccCCHHHHHHHHHHHHHHCCCceEEEecccccCCCeEEEEEeecCCC-CCCCCCCEEEEECCcCCCcH
Confidence 589999999999999999999999999999999999999999998665 55668999999999999994
No 4
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=99.79 E-value=3.9e-19 Score=135.98 Aligned_cols=68 Identities=38% Similarity=0.588 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 34 PHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 34 ~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
.+||+|+||.+||++|+++||+++++.+||+|+|||+|++++|+++++ ...++||+|+++|+|||||.
T Consensus 4 f~~h~y~ei~~~l~~l~~~~P~i~~l~~IG~S~eGR~I~~l~Is~~~~-~~~~~kp~v~~~g~iHg~E~ 71 (375)
T cd03863 4 FRHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPG-IHEPGEPEFKYIGNMHGNEV 71 (375)
T ss_pred CccCCHHHHHHHHHHHHHHCCCcEEEEEcccCCccceEEEEEEecCCC-cccCCCCeEEEEccccCCcH
Confidence 478999999999999999999999999999999999999999998664 45568999999999999994
No 5
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=99.79 E-value=4.2e-19 Score=136.53 Aligned_cols=66 Identities=33% Similarity=0.560 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 36 y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
||+|+||.+||++|+++||+++++.+||+|+|||+|++++|+++++ +....||+|+++|||||||.
T Consensus 1 y~~y~ei~~~l~~la~~~p~~~~~~~iG~S~EGR~i~~l~is~~~~-~~~~~kp~v~i~~giHg~E~ 66 (395)
T cd03867 1 HHSYSQMVSVLKRTAARCSHIARTYSIGRSFEGRDLLVIEFSSNPG-QHELLEPEVKYIGNMHGNEV 66 (395)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEccccCCCceEEEEEeccCCC-cccccCCeEEEEccccCCcH
Confidence 8999999999999999999999999999999999999999998665 45567999999999999994
No 6
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=99.79 E-value=5.8e-19 Score=131.62 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=61.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 33 NPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 33 ~~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
|++||+|+||.+||++|+++||+++++.+||+|+|||+|++++|++++ +..||+||++|||||||.
T Consensus 2 ~~~Y~~~~ei~~~l~~l~~~~p~~v~~~~iG~S~egR~I~~l~is~~~----~~~k~~v~i~~giHarE~ 67 (300)
T cd06246 2 YEQYHSLNEIYSWIEFITERHSDMLEKIHIGSSFEKRPLYVLKVSGKE----QTAKNAIWIDCGIHAREW 67 (300)
T ss_pred CCccCCHHHHHHHHHHHHHHCCCcEEEEecccCCCCCeEEEEEEeCCC----CCCCCeEEEecccCccch
Confidence 689999999999999999999999999999999999999999999743 346899999999999994
No 7
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=99.78 E-value=5.5e-19 Score=131.79 Aligned_cols=66 Identities=18% Similarity=0.368 Sum_probs=61.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 32 ENPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 32 ~~~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
++++||+|+||.+||++|+++||+++++.+||+|+|||+|++++|+++. ..||+||++||+||||.
T Consensus 2 ~~~~Y~~~~ei~~~l~~la~~~p~~v~~~~IG~S~eGR~i~~l~i~~~~-----~~kp~v~i~~giHarE~ 67 (300)
T cd03871 2 SYEKYNNWETIEAWTEQVASENPDLISRSQIGTTFEGRPIYLLKVGKPG-----VNKPAIFMDCGFHAREW 67 (300)
T ss_pred CccccCCHHHHHHHHHHHHHHCCCceEEEEeeeCCCCCeeEEEEEccCC-----CCCCeEEEecccccccc
Confidence 5789999999999999999999999999999999999999999999742 46899999999999994
No 8
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.78 E-value=7.4e-19 Score=133.86 Aligned_cols=69 Identities=42% Similarity=0.610 Sum_probs=62.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 33 NPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 33 ~~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
|++|++|+||.+||++|+++||+++++.+||+|+|||+|++++|+++.. .....||.|||.|+|||||.
T Consensus 1 ~~~Y~ty~ei~~~L~~La~~~P~lv~l~~IG~S~EGR~I~~l~Is~~~~-~~~~~Kp~I~i~~giHarEw 69 (360)
T cd06905 1 FSRYYRYDELTAALQAWASAYPQLCSLESIGKSYEGRDIWLLTLTNQAT-GPDREKPAFWIDANIHATEV 69 (360)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCceEEEEeeecCCCCceEEEEecCCCC-CCCCCCcEEEEecCCCCCch
Confidence 5789999999999999999999999999999999999999999997543 34467999999999999994
No 9
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=99.78 E-value=8.7e-19 Score=130.63 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=60.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 33 NPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 33 ~~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
|++||+|+||.+||++|+++||+++++.+||+|+|||+|++++|+++. ..+||.||++|+|||||.
T Consensus 1 ~~~Y~~~~ei~~~l~~L~~~~p~~v~l~~iG~S~EgR~I~~l~i~~~~----~~~k~~i~i~~giHarEw 66 (298)
T cd06247 1 YTKYHPMDEIYNWMDQIKEKYSELVSQHYLGCTYELRPMYYLKIGWPS----DKPKKIIWMDCGIHAREW 66 (298)
T ss_pred CCCcCCHHHHHHHHHHHHHHCCCcEEEEeceECcCCceEEEEEeecCC----CCCCcEEEEecccccccc
Confidence 578999999999999999999999999999999999999999999743 246889999999999994
No 10
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=99.78 E-value=1e-18 Score=133.36 Aligned_cols=66 Identities=50% Similarity=0.897 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 36 y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
||+|+||.+||++|+++||+++++.+||+|+|||+|++++|++++. .....||+|+++|+|||||+
T Consensus 1 Y~~y~ei~~~l~~l~~~~p~~~~l~~iG~S~eGR~i~~l~is~~~~-~~~~~kp~v~~~~~iH~~E~ 66 (372)
T cd03868 1 YHHYEELTDLLHSLAKKYPNIARLHSIGRSVEGRELWVLRITDNVN-RREPGEPMFKYVGNMHGDET 66 (372)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEeccccCCCceEEEEEEecCCC-CCCCCCCeEEEECCcCCCcH
Confidence 8999999999999999999999999999999999999999998654 44567999999999999995
No 11
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=99.77 E-value=1.1e-18 Score=133.58 Aligned_cols=68 Identities=40% Similarity=0.692 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 34 PHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 34 ~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
.+||+|+||.+||++|+++||+++++.+||+|+|||+|++++|++++. +....||.|+++|+|||||.
T Consensus 3 ~~Y~~~~ei~~~l~~l~~~~p~i~~l~~IG~S~eGR~i~~l~ig~~~~-~~~~~~P~v~~~~~iHg~E~ 70 (376)
T cd03866 3 FNYHNTEQMEAYLKDVNKNYPSITHLHSIGQSVEGRELWVLVLGRFPR-EHRIGIPEFKYVANMHGNEV 70 (376)
T ss_pred cccCCHHHHHHHHHHHHHhCCCcEEEEEeeccCCCceEEEEEeccCCc-cccCCCCeEEEEcccCCCcH
Confidence 589999999999999999999999999999999999999999998654 44567999999999999994
No 12
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=99.77 E-value=1.4e-18 Score=129.76 Aligned_cols=68 Identities=22% Similarity=0.312 Sum_probs=62.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 33 NPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 33 ~~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
|++||+|+||.+||++|+++||+++++.+||+|+|||+|++++|+++.+ .+..||+|+++|+|||||.
T Consensus 1 ~~~Y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~I~~~~~--~~~~k~~v~i~~giHarE~ 68 (304)
T cd06248 1 FDSYHPLEDHLQWLRDLQAAFPNNSELFTIGKSYEGRTILGLHIWGSGG--EKGSKPAIVIHGTVHAREW 68 (304)
T ss_pred CCccCCHHHHHHHHHHHHHHCCCceEEeceEECCCCCeEEEEEEecCCC--CCCCCcEEEEECCcCcCcc
Confidence 5789999999999999999999999999999999999999999997542 2457899999999999994
No 13
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=99.77 E-value=1.4e-18 Score=129.68 Aligned_cols=66 Identities=26% Similarity=0.392 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 32 ENPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 32 ~~~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
+|.+|++|+||.+||++|+++||+++++.+||+|+|||+|++++|+++. ..||+|+++||+||||.
T Consensus 2 ~~~~Y~~~~ei~~~l~~L~~~~p~~v~~~~iG~S~eGR~I~~l~is~~~-----~~kp~v~i~~giHarE~ 67 (301)
T cd03870 2 NYATYHTLDEIYDFMDLLVAEHPNLVSKLQIGRSYEGRPIYVLKFSTGG-----SNRPAIWIDAGIHSREW 67 (301)
T ss_pred CccccCCHHHHHHHHHHHHHHCCCceEEEecccCCCCCeEEEEEEecCC-----CCCceEEEeccccccch
Confidence 5789999999999999999999999999999999999999999999753 26899999999999994
No 14
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=99.77 E-value=1.4e-18 Score=133.55 Aligned_cols=66 Identities=39% Similarity=0.649 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 36 y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
||+|+||.+||++|+++||+++++.+||+|+|||+|++++|+++++ ...+.||+|+++|+|||||.
T Consensus 1 ~h~y~em~~~L~~l~~~yP~i~~l~sIG~SveGR~i~~l~is~~~~-~~~~~kp~v~~~g~iHg~E~ 66 (392)
T cd03864 1 HHRYDDLVRALYAVQNECPYITRIYSIGRSVEGRHLYVLEFSDNPG-IHEPLEPEFKYVGNMHGNEV 66 (392)
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEEeeeccCCceEEEEEecCCCc-cccCCCCEEEEEcccCCCcH
Confidence 7999999999999999999999999999999999999999998765 55668999999999999994
No 15
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=99.75 E-value=5e-18 Score=126.08 Aligned_cols=67 Identities=39% Similarity=0.479 Sum_probs=61.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 34 PHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 34 ~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
.+|++|+||.++|++|+++||+++++.+||+|+|||+|++++|++++. ....||+|+++|+|||||.
T Consensus 2 ~~y~~y~ei~~~l~~l~~~~p~~v~~~~iG~S~eGR~i~~l~i~~~~~--~~~~kp~i~i~~~iH~~E~ 68 (295)
T cd03859 2 RGYHNYLEMVDELNAAAAAYPNLTKVKSIGKSYEGRDIIAVKISDNVA--TDENKPEVLYTSTHHAREW 68 (295)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCceEEEeeeecCCCCeEEEEEEecCCC--CCCCCCEEEEECCcCccch
Confidence 579999999999999999999999999999999999999999998652 3457999999999999995
No 16
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=99.75 E-value=4.3e-18 Score=129.74 Aligned_cols=66 Identities=50% Similarity=0.787 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 36 y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
||+|+||.+||++|+++||+++++.+||+|+|||+|++++|+++++ .....||+|+++|++||||.
T Consensus 1 Y~~y~ei~~~l~~l~~~~p~~~~~~~iG~S~eGR~i~~l~i~~~~~-~~~~~kp~v~i~agiH~~E~ 66 (374)
T cd03858 1 YHNYAELESFLKEVAANYPNITRLYSIGKSVQGRDLWVLEISDNPG-VHEPGEPEFKYVGNMHGNEV 66 (374)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEcccCCCCCEEEEEEEecCCC-CCCCCCceEEEeccccCCch
Confidence 8999999999999999999999999999999999999999998654 34458999999999999995
No 17
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=99.75 E-value=3.8e-18 Score=127.30 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 35 ~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
.||+|+||.+||++|+++||+++++.+||+|+|||+|++++|+++. +..||.||++|||||||.
T Consensus 1 ~Y~~~~ei~~~l~~L~~~~p~~v~l~~iG~S~EGR~i~~l~i~~~~----~~~k~~i~i~~giHarEw 64 (300)
T cd03872 1 VYHPLEEIESWMFYMNKTHSDLVHLFSIGKSYEGRSLYVLKLGKRT----RSYKKAVWIDCGIHAREW 64 (300)
T ss_pred CCCCHHHHHHHHHHHHHHCCCceEEEEeeecCCCCceEEEEEecCC----CCCCCeEEEecccccccc
Confidence 3899999999999999999999999999999999999999999753 246899999999999994
No 18
>KOG2650|consensus
Probab=99.72 E-value=9.5e-18 Score=129.59 Aligned_cols=66 Identities=33% Similarity=0.380 Sum_probs=62.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCC
Q psy7680 32 ENPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDE 101 (102)
Q Consensus 32 ~~~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E 101 (102)
.|..||+++||.+||+.|+.+||++|++..||+|+|||+|.+++|+.+. ...||+||++|||||||
T Consensus 117 ~~~~Y~~le~I~~~l~~l~~~~P~~v~~~~IG~s~EgR~i~~lkIs~~~----~~~k~~I~id~GiHARE 182 (418)
T KOG2650|consen 117 NWERYHSLEEIYEWLDNLAERYPDLVSLIHIGRSYEGRPLKVLKISGGD----NRNKKAIFIDAGIHARE 182 (418)
T ss_pred cHHHhcCHHHHHHHHHHHHHhCCCceEEEEcccccCCceEEEEEecCCC----CCCCceEEEecchhHHh
Confidence 7899999999999999999999999999999999999999999999753 35789999999999998
No 19
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=99.70 E-value=5.6e-17 Score=120.30 Aligned_cols=63 Identities=32% Similarity=0.444 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 36 y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
||||+||.+||++|+++||+++++.+||+|+|||+|++++|+++. ...||+|+++|++||||.
T Consensus 1 Y~ty~ei~~~l~~l~~~~p~~~~~~~iG~S~egr~i~~l~i~~~~----~~~k~~v~i~~~~Hg~E~ 63 (294)
T cd03860 1 YHTYDEIYAWLDELAQKYPDLVTVETIGRSYEGRPIKGVKISNGG----RSNKPAIFIDAGIHAREW 63 (294)
T ss_pred CCCHHHHHHHHHHHHHHCCCceEEEeeeeCCCCCeEEEEEEecCC----CCCCcEEEEECCcCcCcc
Confidence 899999999999999999999999999999999999999999853 346899999999999995
No 20
>smart00631 Zn_pept Zn_pept.
Probab=99.69 E-value=8.5e-17 Score=118.35 Aligned_cols=63 Identities=40% Similarity=0.585 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 36 y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
|++|+||.++|++|+++||+++++.+||+|++||+|++++|++++ ...||+|+|+|++||||.
T Consensus 1 y~ty~e~~~~l~~l~~~~~~~v~~~~iG~S~~Gr~i~~~~i~~~~----~~~k~~v~i~a~~Hg~E~ 63 (277)
T smart00631 1 YHSYEEIEAWLKELAARYPDLVRLVSIGKSVEGRPIWVLKISDGG----SHNKPAIFIDAGIHAREW 63 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCceEEEeceecCCCCceEEEEEeCCC----CCCCcEEEEECCcccccc
Confidence 799999999999999999999999999999999999999999753 235899999999999995
No 21
>cd06242 Peptidase_M14-like_1_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.69 E-value=1.1e-16 Score=117.79 Aligned_cols=67 Identities=24% Similarity=0.244 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 36 y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
+.+|+||.+||++|++++|.+.++.++|+|+|||+|++++|+++++......||+||+.|||||+|+
T Consensus 2 ~t~y~e~~~~l~~La~~~~~i~~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~V~i~~giHg~E~ 68 (268)
T cd06242 2 PTSHEEMESFMKSLASKNDWMSYHSDIGKSEEGRSIPYVYLSTSKSSSSSSKKLRVWLQGGVHGNEP 68 (268)
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEECccccCCceeEEEEEecCCccccCCCCCEEEEECCcCCCCH
Confidence 6799999999999999999877799999999999999999997542112467899999999999995
No 22
>KOG2649|consensus
Probab=99.64 E-value=4.5e-16 Score=121.09 Aligned_cols=70 Identities=37% Similarity=0.611 Sum_probs=67.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 32 ENPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 32 ~~~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
-...||+|++|.++|+++..+||.+.++++||||+|||+||++.|++.++ .+..++|.+.++|+|||||+
T Consensus 65 l~f~hh~y~~m~~~l~~~~~~~p~itrlYSiGkSv~Gr~L~Vle~sd~Pg-eH~~gePEfKyv~nmHGnE~ 134 (500)
T KOG2649|consen 65 LTFGHHNYDDLEKALKDFTKRCPNITRLYSIGKSVEGRELWVIEISDRPG-EHEPGEPEFKYIGNMHGNEV 134 (500)
T ss_pred ccCCCCCHHHHHHHHHHHHhhCCcceeeeeccccccCceEEEEEcCCCCC-cccCCCCcceeeeecccccc
Confidence 35689999999999999999999999999999999999999999999998 89999999999999999996
No 23
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=99.59 E-value=5.3e-15 Score=108.25 Aligned_cols=60 Identities=40% Similarity=0.597 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 42 LTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 42 i~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
|.+||++|+++||+++++.+||+|++||+|++++|+++.. .....||+|+|+|++||+|+
T Consensus 1 i~~~l~~l~~~~p~~v~~~~iG~S~~Gr~i~~~~i~~~~~-~~~~~k~~v~i~~~~Hg~E~ 60 (279)
T PF00246_consen 1 INAYLDALAARYPDIVRLESIGKSYEGRPIYALTIGSNSN-GSDPGKPTVLIIAGIHGNEW 60 (279)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEEE-TTS-EEEEEEESSSTT-TTSTTSEEEEEEE-SSTT-T
T ss_pred CHHHHHHHHHHCCCcEEEEEeeECCCCCeEEEEEeecccc-cccccccceEEEeccccccc
Confidence 6899999999999999999999999999999999998643 45678999999999999995
No 24
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.57 E-value=9e-15 Score=107.92 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=57.6
Q ss_pred CCC-HHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 36 YLS-FDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 36 y~~-~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
||+ ++||.+||++|+++||+ +++..+|+|+|||+|++++|+.+.+ ....||+||+.||+||||.
T Consensus 2 Yh~~~~ei~~~l~~l~~~~p~-~~~~~ig~S~egr~i~~i~~~~~~~--~~~~k~~i~i~agiHarE~ 66 (272)
T cd06227 2 YHTATDEINEEADALVKNIRL-SRLGELIESVKVRNFSSITLNPNGD--PSKKKVKALLLFGEHAREL 66 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCC-cEEeeeeeccCCceeeEEEecCCCC--CCCCCCEEEEECCccCCch
Confidence 899 99999999999999999 8999999999999999999997542 1146899999999999994
No 25
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=99.48 E-value=1.1e-13 Score=100.79 Aligned_cols=60 Identities=23% Similarity=0.264 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 35 ~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
...+++++.+||++|++. +++++.+||+|+|||||++++|++++ .||.|++.|++||+|.
T Consensus 6 ~~~~~~~i~~~l~~L~~~--~~v~~~~iG~S~eGR~i~~l~ig~~~------~k~~v~i~~~iH~~E~ 65 (244)
T cd06237 6 ELIDNQDVKDWVDSLIKQ--PFVELELLGLSTQGRPLKALERGNPD------SKEWIVVISRQHPPEV 65 (244)
T ss_pred eeCCHHHHHHHHHHHhcC--CCeEEEEeeEcCCCCEEEEEEecCCC------CCceEEEEcCcCCCcH
Confidence 457899999999999766 57999999999999999999998643 4789999999999994
No 26
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=99.41 E-value=8.7e-13 Score=97.05 Aligned_cols=61 Identities=25% Similarity=0.310 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 35 ~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
.=++|+++.+|++.+++. + .+++.++|+|+|||+|++++|++.. .+||.|||+|++||+|+
T Consensus 9 ~Pys~~~~~~~l~~~~~~-~-~v~~~~iG~S~eGR~i~~l~I~~~~-----~~k~~V~i~a~iH~~E~ 69 (263)
T cd06234 9 APYSYERHLALIARAQGA-P-DVRLEVLGQTVQGRDIDLLTFGEPG-----PGKKKLWIIARQHPGET 69 (263)
T ss_pred CCCCHHHHHHHHHHHhcC-C-CeEEEEEEEcCCCCeEEEEEEccCC-----CCCCEEEEECCCCCCcH
Confidence 346899999999999863 3 6999999999999999999998732 36899999999999994
No 27
>cd06241 Peptidase_M14-like_1_4 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.40 E-value=6.6e-13 Score=97.73 Aligned_cols=58 Identities=33% Similarity=0.460 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCC----CCCCCCceEEEEccccCCCC
Q psy7680 44 KFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVAS----GRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 44 ~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~----~~~~~kp~v~i~ggiHg~E~ 102 (102)
+|+++|++++| .+++++||+|.|||+|++++|+++... ....+||+||+.|||||+|+
T Consensus 1 a~~~~La~~~~-~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~~~~~kp~v~i~agiH~~E~ 62 (266)
T cd06241 1 AFLERLAAASP-LIRLESFGKTPEGRPLHLLVLSKDGAFTPEEAKRSGKPVVLVQAGIHAGEI 62 (266)
T ss_pred CHHHHHHHhCC-ceEEEEeEeCCCCCeeEEEEEecCCccchhhhcccCCCEEEEeCCcCCCCc
Confidence 48999999997 589999999999999999999975421 12357999999999999995
No 28
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.38 E-value=1e-12 Score=96.59 Aligned_cols=57 Identities=25% Similarity=0.226 Sum_probs=49.0
Q ss_pred HHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 46 LVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 46 l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
|++|+++||+.+++.+||+|+|||+|++++|+++.+......||.|||+|++|+||.
T Consensus 1 l~~l~~~~p~~~~~~~iG~S~eGR~i~~l~It~~~~~~~~~~k~~I~i~ariHp~E~ 57 (261)
T cd06908 1 LDALEKRSLDYFRREQLGQSVQKRRLDLLTIDSPDNLREDSEKKVIFITARVHPGES 57 (261)
T ss_pred ChHHHhhCCCcEEEEEeEEcCCCCeeEEEEEcCCCccccCCCCcEEEEECCcCCCCh
Confidence 467899999999999999999999999999997542122357899999999999995
No 29
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=99.25 E-value=1.3e-11 Score=92.00 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=43.5
Q ss_pred CCCCeEEEEccccC------CCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 53 NPSKVKLHSIGKSV------QNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 53 ~p~~v~~~~iG~S~------eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
||+++++.+||+|+ |||+|++|+|+++........||+||++|+|||||.
T Consensus 1 ~p~~~~~~~iG~S~~~~~~~eGR~I~~l~ig~~~~~~~~~~kp~v~i~~~iHarE~ 56 (293)
T cd06226 1 YPNLAQWVDIGDSWDKPGGPAGYDIRALKLTNKATNSPTGPKPVFFIMGAIHAREY 56 (293)
T ss_pred CCcceEEEEeeEecccCcccCCceEEEEEEecCCCCcCCCCCCEEEEECCcCCCcH
Confidence 79999999999999 999999999998653113568999999999999994
No 30
>cd06239 Peptidase_M14-like_1_2 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.20 E-value=3.2e-11 Score=87.36 Aligned_cols=46 Identities=28% Similarity=0.507 Sum_probs=41.9
Q ss_pred HHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 49 AAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 49 la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
+.+++|++++++.+|+|++||||++++|+++ ||+|+++|++||||+
T Consensus 2 ~~~~~p~~v~~~~iG~S~eGrpI~~l~ig~g--------~~~vli~agiHG~E~ 47 (231)
T cd06239 2 LLEKLPAKFKVEVIGKSVEGRPIYSVKFGSG--------KIKILLWSQMHGNES 47 (231)
T ss_pred hHHHCCCeeEEEEeeECCCCCeEEEEEEcCC--------CcEEEEEeccCCCCH
Confidence 4578999999999999999999999999973 579999999999995
No 31
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=99.09 E-value=2.5e-10 Score=84.22 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 37 LSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 37 ~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
.+|.+...+++.++ ++.+++.+||+|.+||+|++++++.+ .+||.||++|++||+|+
T Consensus 11 ~~y~~~~~l~~sl~---~~~v~l~~IG~s~egr~i~~~~~~~~------~~k~~i~i~a~iH~~E~ 67 (269)
T cd03856 11 QIYDRRLALCESLQ---GNSCDLLTITSPPEGNDIKYEHLCSF------ANKKYIFLIARVHPGET 67 (269)
T ss_pred cCHHHHHHHHHHhc---CCceeEEEeccCCCCccccceeccCC------CCCcEEEEEcCcCCCch
Confidence 57788888888886 67899999999999999999988753 35899999999999995
No 32
>cd06240 Peptidase_M14-like_1_3 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=98.97 E-value=6e-10 Score=82.46 Aligned_cols=45 Identities=27% Similarity=0.194 Sum_probs=36.9
Q ss_pred EEEEccccCCCceEEEEEEecCCCC--------------------------CCCCCCceEEEEccccCCCC
Q psy7680 58 KLHSIGKSVQNRDLWALQISRNVAS--------------------------GRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 58 ~~~~iG~S~eGR~i~~l~is~~~~~--------------------------~~~~~kp~v~i~ggiHg~E~ 102 (102)
+++++|||+|||+|++++|++..+. .....||+||+.++|||||+
T Consensus 1 ~l~~iGkS~EGR~l~~~~Iss~~n~~~ld~~~~~~~~la~~~~~~~~~a~~~~~~~kp~v~i~~~iHg~E~ 71 (273)
T cd06240 1 KLVEIGKTEEGRPQIMAAISSPENLAKLDHYKAILRKLADPRGLTEEQARALIAEGKPIVWIDGGLHSTET 71 (273)
T ss_pred CeeEeecCCCCCeEEEEEeeChhHhhhHHHHHHHHhhhhccccccchhhhhhhccCCCEEEEECCcCCCch
Confidence 4789999999999999999974420 02346999999999999995
No 33
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=98.94 E-value=2.1e-09 Score=78.82 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=41.6
Q ss_pred CCCCeEEEEccccCCCceEEEEEEecCCC-CCCCCCCceEEEEccccCCCC
Q psy7680 53 NPSKVKLHSIGKSVQNRDLWALQISRNVA-SGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 53 ~p~~v~~~~iG~S~eGR~i~~l~is~~~~-~~~~~~kp~v~i~ggiHg~E~ 102 (102)
.++.++++++|+|++||+|++++|++... .....+||.|+|.|++||+|.
T Consensus 9 ~~~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~k~~V~i~a~iH~~E~ 59 (258)
T cd06235 9 NNQYLKRKILCTTLGGLPVPLLTITSPSSKSIPIKKKKVIVITARQHPGET 59 (258)
T ss_pred CCCceEEEEeEEcCCCCeeeEEEEeCCcccccccCCCcEEEEECCcCCCCh
Confidence 56789999999999999999999997431 013357899999999999995
No 34
>cd06243 Peptidase_M14-like_1_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=98.92 E-value=1.7e-09 Score=78.60 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=34.1
Q ss_pred ccccCCCceEEEEEEecCCCC--CCCCCCceEEEEccccCCCC
Q psy7680 62 IGKSVQNRDLWALQISRNVAS--GRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 62 iG~S~eGR~i~~l~is~~~~~--~~~~~kp~v~i~ggiHg~E~ 102 (102)
||+|+|||||++++|++..+. .....||+|++.|++||||+
T Consensus 1 iG~S~eGRpi~~l~i~~~~~~~~~~~~~~p~v~i~~giHG~E~ 43 (236)
T cd06243 1 IGTSQRGRPIHLVRVGFAEGPSALDIANRPTVLLVGTQHGDEP 43 (236)
T ss_pred CccCCCCCeeEEEEEecCCCccccccCCCCEEEEECCcCCCCh
Confidence 699999999999999976431 12357899999999999995
No 35
>cd03857 Peptidase_M14-like_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=98.91 E-value=2e-09 Score=77.34 Aligned_cols=41 Identities=37% Similarity=0.497 Sum_probs=34.0
Q ss_pred ccccCCCceEEEEEEecCCCC----CCCCCCceEEEEccccCCCC
Q psy7680 62 IGKSVQNRDLWALQISRNVAS----GRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 62 iG~S~eGR~i~~l~is~~~~~----~~~~~kp~v~i~ggiHg~E~ 102 (102)
||+|+|||||++++|++..+. ....+||+|++.|++||+|+
T Consensus 1 iG~S~eGRpi~~~~i~~~~~~~~~~~~~~~k~~v~i~~giHg~E~ 45 (226)
T cd03857 1 IGKSVEGRPLWMVTLTTAEGMKKRALAKEGKPRVWIDAQIHGNES 45 (226)
T ss_pred CccCCCCCeEEEEEEeCCccccccccccCCCcEEEEECCcCCCCc
Confidence 699999999999999985431 12347899999999999995
No 36
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=98.89 E-value=3.9e-09 Score=77.71 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=40.6
Q ss_pred CCCeEEEEccccCCCceEEEEEEecCCC-CCCCCCCceEEEEccccCCCC
Q psy7680 54 PSKVKLHSIGKSVQNRDLWALQISRNVA-SGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 54 p~~v~~~~iG~S~eGR~i~~l~is~~~~-~~~~~~kp~v~i~ggiHg~E~ 102 (102)
++.++++++|+|+|||+|++++|++... ......||.|||+|++|+||.
T Consensus 11 ~~~~~~~~lg~S~eGR~i~~LtIt~~~~~~~~~~~K~~I~I~ariHp~E~ 60 (261)
T cd06907 11 SKFCKLRVLCRTLAGNTVYLLTITSPSSNPSLAAAKKAVVLTARVHPGET 60 (261)
T ss_pred CCceEEEEEEECCCCCeeeEEEEcCCCccccccCCCCEEEEECCcCCChH
Confidence 4578999999999999999999997432 012357999999999999994
No 37
>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=98.75 E-value=1.8e-08 Score=75.64 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=39.0
Q ss_pred CeEEEEccccCCCceEEEEEEecCCCCC--------------------CCCCCceEEEEccccCCCC
Q psy7680 56 KVKLHSIGKSVQNRDLWALQISRNVASG--------------------RNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 56 ~v~~~~iG~S~eGR~i~~l~is~~~~~~--------------------~~~~kp~v~i~ggiHg~E~ 102 (102)
.++.+.+|+|.|||+|++++|++..+.. ...+||+|||+|+||++|.
T Consensus 15 y~~~~~Lg~S~eGR~i~lLtITs~~~~~~~~~~~~~~l~~~~~~~~~~~~~~K~~V~I~ariHp~E~ 81 (304)
T cd06236 15 YYHREVLCYSLEGRRIDLLTITSCHGKLEQREPRLEGLFPDRKTPRPHFFFGKPVVFISSRVHPGET 81 (304)
T ss_pred EEEEEEeEECCCCCceEEEEEecCcccccccccccccccccccccccccccCCcEEEEECCcCCCCc
Confidence 5788999999999999999999754310 1257999999999999995
No 38
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=98.72 E-value=1.3e-08 Score=77.17 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=33.2
Q ss_pred EEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 60 HSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 60 ~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
+.-++|+|||+|++|+|+++.. ..||+||++|+|||||.
T Consensus 4 ~~~~~S~EgR~I~~l~I~~~~~----~~kp~V~i~ggiHAREw 42 (332)
T cd06228 4 ELPHKTYEGRTPHGAKIGAGTL----TSRYGALFIGGVHARER 42 (332)
T ss_pred CCCCCCCCCCeeEEEEEeCCCC----CCCCEEEEEccccccch
Confidence 3458999999999999997532 46899999999999993
No 39
>cd06238 Peptidase_M14-like_1_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=98.59 E-value=3.5e-08 Score=72.98 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=33.3
Q ss_pred ccccCCCceEEEEEEecCCCCC---------------------CCCCCceEEEEccccCCCC
Q psy7680 62 IGKSVQNRDLWALQISRNVASG---------------------RNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 62 iG~S~eGR~i~~l~is~~~~~~---------------------~~~~kp~v~i~ggiHg~E~ 102 (102)
+|+|+|||+|.++.|++..+.. ....+|+|||.++|||||.
T Consensus 1 ~G~s~egR~l~~~~I~s~~n~~~l~~~~~~~~~la~p~~~~~~~~~~~~~v~i~~~iH~~E~ 62 (271)
T cd06238 1 YGRTHEGRPLLLATITSPENIARLDQIREDHLALADPAATSSLISDQPVVVWLGYSVHGNEI 62 (271)
T ss_pred CCcCCCCCeeEEEEEeCHHHHHhHHHHHHHHHHhcCccccccccccCCcEEEEECCcCCCCh
Confidence 6999999999999999854310 1236889999999999995
No 40
>PRK10602 murein peptide amidase A; Provisional
Probab=98.57 E-value=4.9e-08 Score=71.05 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=33.8
Q ss_pred eEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 57 VKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 57 v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
....++|+|+|||||++++++.+ +|+.|+++|||||||.
T Consensus 15 ~~~~~iG~S~egrpi~~l~~~~~-------~~~~vli~agiHG~E~ 53 (237)
T PRK10602 15 PGTEHYGRSLLGAPLLWFPAPAA-------SRESGLILAGTHGDET 53 (237)
T ss_pred ccccccccccCCCceEEEEcCCC-------CCceEEEEecCCCCcH
Confidence 46789999999999999998753 3678999999999994
No 41
>cd06244 Peptidase_M14-like_1_7 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=98.42 E-value=2.8e-07 Score=68.14 Aligned_cols=41 Identities=29% Similarity=0.259 Sum_probs=32.2
Q ss_pred ccccCCCceEEEEEEecCCCC-------------------------CCCCCCceEEEEccccCCCC
Q psy7680 62 IGKSVQNRDLWALQISRNVAS-------------------------GRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 62 iG~S~eGR~i~~l~is~~~~~-------------------------~~~~~kp~v~i~ggiHg~E~ 102 (102)
||||+|||+|+++.|++.+.. .....|+.|+++++|||||+
T Consensus 1 iGkS~eGR~l~~~~Is~~~a~ld~~~~~~~~l~l~dp~~~~~~~~~~~~~~~k~v~~~~~iHg~E~ 66 (268)
T cd06244 1 AGKSAEGRDIPVVVVAKPEAAVDKYENETLPLMLENPPELADKIEDGTIEDYKPPIINNNIHPDET 66 (268)
T ss_pred CCcCCCCCeeEEEEEeCcHHHHHHHHHHhhhhhhcCcccchhhhccccccccCeEEEEeCcCCCCH
Confidence 799999999999999987510 01235677888899999995
No 42
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=98.38 E-value=3.7e-07 Score=66.35 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 38 SFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 38 ~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
++.+|...|.+| |++ .+ --+|+|||+|.+++|+ . +||+|||+||+||||.
T Consensus 3 ~~~~i~~~l~~~----~g~-~~--~a~S~EGR~I~~l~i~--~------~Kp~I~I~gGvHarEw 52 (240)
T cd06232 3 SAGQIAYELAVL----PGI-EF--AARSRQGRPVTGRYVA--G------LDHPVVISAGQHANET 52 (240)
T ss_pred CHHHHHHHHhhc----CCc-cc--cccccCCCeeeEEEec--C------CCcEEEEeCCcCCCcc
Confidence 456666665444 442 22 5689999999999992 2 4799999999999995
No 43
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=98.32 E-value=1.1e-06 Score=65.29 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=43.5
Q ss_pred HHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCC------CCCCCceEEEEccccCCCC
Q psy7680 47 VAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASG------RNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 47 ~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~------~~~~kp~v~i~ggiHg~E~ 102 (102)
+......+..++...+++|.+||++.+|.|++.+... ....||.|||+|.+|++|+
T Consensus 5 ~~~~~~~~~y~~~~~Lc~Tl~G~~v~lltIt~~~~~~~~~~~~~~~~kp~I~I~ARvHPgEt 66 (278)
T cd06906 5 ESLHDPQQIYFRQQVLCETLGGNSCPLLTITAMPESNYYEHICQFRNRPYIFLSARVHPGET 66 (278)
T ss_pred hhhcCCcccEEeeecceeccCCCceeEEEEeCCCccccccccccccCCcEEEEEcccCCCcc
Confidence 3334444567899999999999999999999854311 1147899999999999994
No 44
>cd06231 Peptidase_M14-like_4 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=98.03 E-value=9.8e-06 Score=58.92 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=35.8
Q ss_pred CCeEEEEccccCC-CceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 55 SKVKLHSIGKSVQ-NRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 55 ~~v~~~~iG~S~e-GR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
...+++.+|+..+ +++|++++..+. +.+||+|++.||+||+|+
T Consensus 13 ~~~~~~~~g~~~~~~~pL~~l~~~~~-----~~~~p~vlI~gGiHG~E~ 56 (236)
T cd06231 13 SRLDVREYGQLAYQSYPLYALKSRGW-----DSDLPRVLITAGIHGDEP 56 (236)
T ss_pred cceEEEEccccccCCeeEEEEEcCCC-----CCCCCEEEEECCCCCCcH
Confidence 3478999999766 999999998653 247899999999999995
No 45
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=97.22 E-value=0.00042 Score=51.46 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=25.7
Q ss_pred CCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 67 QNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 67 eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
...||++++|+++. ..||+|+++||+||+|.
T Consensus 8 ~~~pi~~v~ig~~~-----~~~p~v~i~~giHg~E~ 38 (273)
T cd03862 8 LRFPIYALELGSPD-----PKAPVLGLVGGVHGLER 38 (273)
T ss_pred CcceeEEEEecCCC-----CCCCEEEEEcCcCCCcH
Confidence 46889999998642 46799999999999993
No 46
>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]
Probab=96.10 E-value=0.0062 Score=47.12 Aligned_cols=38 Identities=29% Similarity=0.253 Sum_probs=29.2
Q ss_pred CeEEEEccccCCCc-eEEEEEEecCCCCCCCCCCceEEEEccccC
Q psy7680 56 KVKLHSIGKSVQNR-DLWALQISRNVASGRNLLKPMFKYVANIHG 99 (102)
Q Consensus 56 ~v~~~~iG~S~eGR-~i~~l~is~~~~~~~~~~kp~v~i~ggiHg 99 (102)
.+++..+|+|++|| +++..+-..+ ..+++++|.|++|+
T Consensus 120 ~~~~~~~g~sv~GR~~~~i~~~~~~------~~~~~i~~~~~~H~ 158 (374)
T COG2866 120 LVELELIGRSVEGRDDPLITFPESN------PEHKTILITAGQHA 158 (374)
T ss_pred cceeeecCccccccccceeeecCCC------CccceeeEeccccc
Confidence 56789999999999 5554444332 35789999999998
No 47
>KOG3641|consensus
Probab=95.54 E-value=0.018 Score=46.87 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=54.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 32 ENPHYLSFDELTKFLVAAAQQNP--SKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 32 ~~~~y~~~~ei~~~l~~la~~~p--~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
.+.-=+||..|+-++..|+...+ -..+...++.|..||++.++.|... .-..+|.|++.|-+|.+|+
T Consensus 375 aYhypyTy~~l~~hLn~les~~~~~~yfr~dVl~~tl~g~~~~l~tI~~a----e~~~~~~IfLSaRVHpgeT 443 (650)
T KOG3641|consen 375 AYHYPYTYSQLQCHLNGLESPKNPAFYFRYDVLLFTLVGRAMALATIDMA----ECAPRPVIFLSARVHPGET 443 (650)
T ss_pred eeccCccHHHHHhhhhcccCCCCcCcccchheeeeeecCCccceEEeeHh----hcCCcceEEEecccCCCCC
Confidence 34445799999999999988665 2456778899999999999999942 2356899999999999985
No 48
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.20 E-value=0.031 Score=42.92 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=25.7
Q ss_pred EccccCCC--ceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 61 SIGKSVQN--RDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 61 ~iG~S~eG--R~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
.++++..| +.|.+.++.... +.|+|+++|++||+|.
T Consensus 4 ~~~~~~~g~~~~ipv~~~~g~~------~gp~v~i~agiHGdE~ 41 (359)
T cd06250 4 PLPSPAPGTERELTVFRFGGAG------AGPKVYIQASLHADEL 41 (359)
T ss_pred ecccCCCCCeEEEEEEEEeCCC------CCCEEEEEeccccCch
Confidence 34555555 667777776421 2589999999999994
No 49
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.64 E-value=0.045 Score=40.77 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=22.8
Q ss_pred cccCCCce--EEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 63 GKSVQNRD--LWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 63 G~S~eGR~--i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
++...|.+ |.+..+.... +.|+++++||+||||.
T Consensus 3 ~~~~~g~~~~~pv~~~~g~~------~gp~v~i~agvHG~E~ 38 (293)
T cd06255 3 GTMADGSAVALPVTILRGAE------PGPTLWLHAQVHGNEY 38 (293)
T ss_pred ccCCCCCccceeEEEEeCCC------CCCEEEEEcccCCCcH
Confidence 45555655 4555555321 2489999999999994
No 50
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.20 E-value=0.071 Score=40.12 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=20.9
Q ss_pred CceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 68 NRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 68 GR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
.-.|.+.+|..+. .|+|+++||+||||.
T Consensus 21 ~~~iPv~v~~g~~-------gp~v~I~aGiHGdE~ 48 (316)
T cd06252 21 TVMIPITVIKNGD-------GPTVLLTGGNHGDEY 48 (316)
T ss_pred ceEeeEEEEeCCC-------CCEEEEEccCCCCch
Confidence 4567766666432 379999999999994
No 51
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.17 E-value=0.064 Score=39.81 Aligned_cols=15 Identities=47% Similarity=0.769 Sum_probs=13.7
Q ss_pred CceEEEEccccCCCC
Q psy7680 88 KPMFKYVANIHGDEV 102 (102)
Q Consensus 88 kp~v~i~ggiHg~E~ 102 (102)
.|+|+++||+||||+
T Consensus 20 gp~v~i~~giHGdE~ 34 (287)
T cd06251 20 GPTLLLTAAIHGDEL 34 (287)
T ss_pred CCEEEEEcCccCCch
Confidence 489999999999995
No 52
>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=94.17 E-value=0.28 Score=36.73 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEc---cccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCC
Q psy7680 37 LSFDELTKFLVAAAQQNPSKVKLHSI---GKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDE 101 (102)
Q Consensus 37 ~~~~ei~~~l~~la~~~p~~v~~~~i---G~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E 101 (102)
.+|+|-.+-+.+-++.-.-.++-..+ |..-+--+|.++.++... .+|++++++|+||.|
T Consensus 3 ~sY~eAR~kFl~aA~~aga~~~~~~~~~~gp~g~~l~i~v~~~g~~~------~~~~l~i~sGvHG~E 64 (283)
T cd06233 3 QSYAEAREKFLAAAKAAGAALESYVHPLLGPDGEALAIDVARLGPAD------AKRLLVITSGTHGVE 64 (283)
T ss_pred ccHHHHHHHHHHHHHHcCccceeeeccCCCCCCceeeeeEEEEcCCC------CCcEEEEEecccCCc
Confidence 46788777555555543322232222 333333458888887532 346999999999999
No 53
>cd03855 M14_ASTE Peptidase M14 Succinylglutamate desuccinylase (ASTE, also known as N-succinyl-L-glutamate amidohydrolase, N2-succinylglutamate desuccinylase, and SGDS; EC 3.5.1.96) belongs to the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily of the M14 family of metallocarboxypeptidases. This group includes succinylglutamate desuccinylase that catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. It hydrolyzes N-succinyl-L-glutamate to succinate and L-glutamate.
Probab=92.52 E-value=0.14 Score=38.67 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.6
Q ss_pred CCCceEEEEccccCCCC
Q psy7680 86 LLKPMFKYVANIHGDEV 102 (102)
Q Consensus 86 ~~kp~v~i~ggiHg~E~ 102 (102)
...|+|+++||+||||+
T Consensus 40 ~~gp~v~IsaGvHGNE~ 56 (322)
T cd03855 40 PATKAIVISAGVHGNET 56 (322)
T ss_pred CCCCeEEEEccccCCch
Confidence 34579999999999995
No 54
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=92.20 E-value=0.19 Score=38.17 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.5
Q ss_pred CceEEEEccccCCCC
Q psy7680 88 KPMFKYVANIHGDEV 102 (102)
Q Consensus 88 kp~v~i~ggiHg~E~ 102 (102)
.|+++++||+||+|.
T Consensus 47 gp~v~i~agvHGdE~ 61 (325)
T TIGR02994 47 GPTALLTGGNHGDEY 61 (325)
T ss_pred CCEEEEEeccCCCch
Confidence 389999999999994
No 55
>PRK05324 succinylglutamate desuccinylase; Provisional
Probab=92.19 E-value=0.098 Score=39.78 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.6
Q ss_pred CCCceEEEEccccCCCC
Q psy7680 86 LLKPMFKYVANIHGDEV 102 (102)
Q Consensus 86 ~~kp~v~i~ggiHg~E~ 102 (102)
...|.|+++||+||||+
T Consensus 45 ~~gp~v~IsaGvHGNE~ 61 (329)
T PRK05324 45 PSTKALVLSAGIHGNET 61 (329)
T ss_pred CCCCeEEEECCcccCcH
Confidence 34579999999999995
No 56
>COG2988 Succinylglutamate desuccinylase [Amino acid transport and metabolism]
Probab=91.38 E-value=0.15 Score=38.66 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=27.5
Q ss_pred HHHHhCCCCeEEEEccccCC--CceEEEEEEecCCCCCCCCCCceEEEEccccCCCC
Q psy7680 48 AAAQQNPSKVKLHSIGKSVQ--NRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102 (102)
Q Consensus 48 ~la~~~p~~v~~~~iG~S~e--GR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E~ 102 (102)
.|+-+.|.+.+.+.-|-.|. |+= ++.+.+... .+ . .+.|+|||||||+
T Consensus 8 tl~~~~p~v~q~~~~g~~~~wl~~g--~le~~p~~~--r~-~--~lvIsaGiHGNEt 57 (324)
T COG2988 8 TLSGKKPVVTQREINGVRWRWLGEG--VLELTPLAP--RD-G--SLVISAGIHGNET 57 (324)
T ss_pred hhcCCCCeeeeeccCceEEEEeccc--eeeeccCCC--CC-C--ceEEEecccCCcc
Confidence 35556776666555555432 222 344544321 11 1 6999999999995
No 57
>TIGR03242 arg_catab_astE succinylglutamate desuccinylase. Members of this protein family are succinylglutamate desuccinylase, the fifth and final enzyme of the arginine succinyltransferase (AST) pathway for arginine catabolism. This model excludes the related protein aspartoacylase.
Probab=91.22 E-value=0.14 Score=38.71 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=14.0
Q ss_pred CCceEEEEccccCCCC
Q psy7680 87 LKPMFKYVANIHGDEV 102 (102)
Q Consensus 87 ~kp~v~i~ggiHg~E~ 102 (102)
.-|+|+++||+||||.
T Consensus 40 ~gp~v~IsaGvHGNE~ 55 (319)
T TIGR03242 40 PQKSLVISAGIHGNET 55 (319)
T ss_pred CCCEEEEEcCcccchH
Confidence 4579999999999995
No 58
>cd06256 M14_ASTE_ASPA_like_6 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=91.05 E-value=0.14 Score=38.93 Aligned_cols=14 Identities=29% Similarity=0.448 Sum_probs=13.1
Q ss_pred ceEEEEccccCCCC
Q psy7680 89 PMFKYVANIHGDEV 102 (102)
Q Consensus 89 p~v~i~ggiHg~E~ 102 (102)
|+|+++||+||||.
T Consensus 35 p~v~I~aGvHGNE~ 48 (327)
T cd06256 35 PPLFVSTLLHGNEP 48 (327)
T ss_pred CeEEEEccccCCcH
Confidence 79999999999994
No 59
>COG3608 Predicted deacylase [General function prediction only]
Probab=88.13 E-value=0.53 Score=36.09 Aligned_cols=15 Identities=40% Similarity=0.671 Sum_probs=13.5
Q ss_pred CceEEEEccccCCCC
Q psy7680 88 KPMFKYVANIHGDEV 102 (102)
Q Consensus 88 kp~v~i~ggiHg~E~ 102 (102)
.|+++++++.||||.
T Consensus 48 gp~~~l~ag~HGdEl 62 (331)
T COG3608 48 GPSVLLQAGVHGDEL 62 (331)
T ss_pred CCEEEEEeccccccc
Confidence 489999999999994
No 60
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=86.35 E-value=0.57 Score=34.14 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=14.3
Q ss_pred cCCCceEEEEEEecCC
Q psy7680 65 SVQNRDLWALQISRNV 80 (102)
Q Consensus 65 S~eGR~i~~l~is~~~ 80 (102)
|+|||+|++++|+++.
T Consensus 1 S~eGR~I~~~~ig~~~ 16 (255)
T cd06229 1 SVLGRDIYEVKLGNGP 16 (255)
T ss_pred CCCCceeeEEEEcCCC
Confidence 7899999999999754
No 61
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=61.68 E-value=61 Score=24.99 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEc---cccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCC
Q psy7680 37 LSFDELTKFLVAAAQQNPSKVKLHSI---GKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDE 101 (102)
Q Consensus 37 ~~~~ei~~~l~~la~~~p~~v~~~~i---G~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E 101 (102)
.+|++-.+-+.+.++.-.-.++-..+ |..-|.--+.++.++... .+..++++.|.||=|
T Consensus 3 ~sY~~AR~~Fl~aA~~~ga~~~~~~~p~~G~~ge~L~~Dva~lg~~~------a~~lLv~~SGtHGVE 64 (341)
T PF10994_consen 3 QSYAEARERFLAAAEAAGAKLESYPHPLRGPDGEDLATDVAWLGPKD------ASRLLVLTSGTHGVE 64 (341)
T ss_pred ccHHHHHHHHHHHHHHcCCcceeeeCCCCCCCCCcceeEEEEecCCC------CCeEEEEEecCCccc
Confidence 46788777666666665544443333 334444555667777532 234788899999976
No 62
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=50.68 E-value=26 Score=16.12 Aligned_cols=18 Identities=17% Similarity=0.482 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHhCCC
Q psy7680 38 SFDELTKFLVAAAQQNPS 55 (102)
Q Consensus 38 ~~~ei~~~l~~la~~~p~ 55 (102)
++++-...++++.++||+
T Consensus 15 ~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 15 DYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 457888899999999996
No 63
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=46.25 E-value=16 Score=27.52 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEEc
Q psy7680 35 HYLSFDELTKFLVAAAQQNPSKVKLHSI 62 (102)
Q Consensus 35 ~y~~~~ei~~~l~~la~~~p~~v~~~~i 62 (102)
++.|-+||.+++.+|.++|| ++.++..
T Consensus 131 ~~~s~delid~y~~li~~YP-IvsIEDp 157 (295)
T PF00113_consen 131 RYKSSDELIDYYKDLIKKYP-IVSIEDP 157 (295)
T ss_dssp GEEEHHHHHHHHHHHHHHS--EEEEESS
T ss_pred cccCHHHHHHHHHHHHHhcC-eEEEEcc
Confidence 57899999999999999999 7777653
No 64
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=44.52 E-value=36 Score=23.53 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEE-ccccCCCceEEEEEEecC
Q psy7680 38 SFDELTKFLVAAAQQNPSKVKLHS-IGKSVQNRDLWALQISRN 79 (102)
Q Consensus 38 ~~~ei~~~l~~la~~~p~~v~~~~-iG~S~eGR~i~~l~is~~ 79 (102)
.+.++.+||..+...+..++++.. .|.+.+-+++.+++||..
T Consensus 59 R~~~l~~fl~~~~~~~~~iv~i~Dp~G~t~~~~~~e~iVVS~E 101 (158)
T COG1019 59 RLRNLRNFLESIKADYEEIVPIDDPYGPTVEDPDFEAIVVSPE 101 (158)
T ss_pred HHHHHHHHHHHhcCCcceEEEecCCCCCCCCcCceeEEEEccc
Confidence 457788899888888775555553 499999999999999964
No 65
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=43.70 E-value=25 Score=23.82 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=15.4
Q ss_pred ccchhHHHHH-HHhhcCCCcccCC
Q psy7680 3 FSSISLCFLL-CWVGCTTPVLVNN 25 (102)
Q Consensus 3 ~~~~~~~~~~-~~~~c~~p~~~~~ 25 (102)
+-++.||+++ .+.+|..|..+.+
T Consensus 4 ~~s~~Lv~~~~~Lvsc~~p~~~~p 27 (142)
T TIGR03042 4 LASLLLVLLLTFLVSCSGPAAAVP 27 (142)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCC
Confidence 3455666443 3899999977754
No 66
>COG2913 OlmA Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]
Probab=40.55 E-value=47 Score=22.59 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=24.8
Q ss_pred chhHHHHHHHhhcCCCcccCCCCCCCCCCCCCCCHHHHHH
Q psy7680 5 SISLCFLLCWVGCTTPVLVNNDPEPFLENPHYLSFDELTK 44 (102)
Q Consensus 5 ~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~y~~~~ei~~ 44 (102)
..+++++.++.||.++ +.....+++ .+..+.+.+++.+
T Consensus 11 ~~a~l~~~als~Cst~-~~~~~~~~i-~qGn~~~~~~v~q 48 (147)
T COG2913 11 IAALLGAAALSGCSTL-KVVYYNDDI-NQGNVLDQDAVDQ 48 (147)
T ss_pred HHHHHHHHHhccCccc-ccccccccc-ccccccCHHHHHH
Confidence 3467788889999999 444333344 5566666666554
No 67
>PF11497 NADH_Oxid_Nqo15: NADH-quinone oxidoreductase chain 15; InterPro: IPR021093 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents subunit 15 of NADH-quinone oxidoreductase, also known as Complex I. The nqo15 subunit has probably a role in complex stabilisation, and may be also involved in the storage of iron for iron-sulphur cluster regeneration in the complex [].; PDB: 3M9S_7 3I9V_7 3IAM_H 2FUG_H 3IAS_7 2YBB_7.
Probab=40.39 E-value=1.1e+02 Score=20.25 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeE---------------------EEEccccCCCceEEEEEEec
Q psy7680 36 YLSFDELTKFLVAAAQQNPSKVK---------------------LHSIGKSVQNRDLWALQISR 78 (102)
Q Consensus 36 y~~~~ei~~~l~~la~~~p~~v~---------------------~~~iG~S~eGR~i~~l~is~ 78 (102)
|.-|-|+..||++.++...-... +-+..-|.+|+|+.+.-||.
T Consensus 10 Y~aWvell~Wl~eyA~~~g~~fekeaDFPDyIYRMeRPydLPTtvMsvslS~~geP~l~a~vSp 73 (127)
T PF11497_consen 10 YRAWVELLGWLREYAAERGLRFEKEADFPDYIYRMERPYDLPTTVMSVSLSDGGEPFLVAAVSP 73 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEEE-HHHHT--SS----S-SEEEEEEE-SS-EEEEEEE--
T ss_pred HHHHHHHHHHHHHHHHHcCCceeecccccHHHHhccCcccCCceeEEEEecCCCceEEEEecCc
Confidence 44567788888888877632221 44567788899999999985
No 68
>PRK04151 IMP cyclohydrolase; Provisional
Probab=40.05 E-value=71 Score=22.90 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=19.7
Q ss_pred CCCCeEEEEccccCCCceEEEEEEecC
Q psy7680 53 NPSKVKLHSIGKSVQNRDLWALQISRN 79 (102)
Q Consensus 53 ~p~~v~~~~iG~S~eGR~i~~l~is~~ 79 (102)
||+ +...+|+|.+|++.-+-.|+..
T Consensus 2 Y~G--R~ivvG~s~dG~~~~aY~V~sR 26 (197)
T PRK04151 2 YVG--RFLVVGKTEEGKPFAAYRVSSR 26 (197)
T ss_pred CCC--CEEEEccCCCCCeEEEEEEecC
Confidence 565 5778999999999877788753
No 69
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=37.38 E-value=49 Score=21.25 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEccc
Q psy7680 37 LSFDELTKFLVAAAQQNPSKVKLHSIGK 64 (102)
Q Consensus 37 ~~~~ei~~~l~~la~~~p~~v~~~~iG~ 64 (102)
-+|.++..|+++|. ..|.++.+..+--
T Consensus 95 G~Y~~l~~Fl~~l~-~l~riv~i~~~~l 121 (144)
T PF04350_consen 95 GSYHQLLNFLNDLE-NLPRIVNIENLSL 121 (144)
T ss_dssp EEHHHHHHHHHHHH-TSSS-EEEEEEEE
T ss_pred eeHHHHHHHHHHHH-cCCCeEEEeeeEE
Confidence 47899999999995 6688888877633
No 70
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=36.66 E-value=85 Score=18.43 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q psy7680 34 PHYLSFDELTKFLVAAAQQNPSKVKLHSIGK 64 (102)
Q Consensus 34 ~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~ 64 (102)
..|.+++-+..-|+++.+++|+++ +.+-|-
T Consensus 12 R~~~D~~~i~~~Ld~~~~~~~~~~-lvhGga 41 (71)
T PF10686_consen 12 RDWTDHELIWAALDKVHARHPDMV-LVHGGA 41 (71)
T ss_pred CccccHHHHHHHHHHHHHhCCCEE-EEECCC
Confidence 456788999999999999999854 555443
No 71
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=34.02 E-value=46 Score=20.94 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCCeEEEEccccCCC
Q psy7680 41 ELTKFLVAAAQQNPSKVKLHSIGKSVQN 68 (102)
Q Consensus 41 ei~~~l~~la~~~p~~v~~~~iG~S~eG 68 (102)
+..+||+.++++..++ ..|||+..-
T Consensus 36 ~~q~Wl~sI~ekd~nl---vPIGK~~se 60 (92)
T PF15243_consen 36 QHQAWLQSIAEKDNNL---VPIGKPASE 60 (92)
T ss_pred HHHHHHHHHHHhccCc---CccCCCCCc
Confidence 3567999999998764 788996644
No 72
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=33.32 E-value=47 Score=17.33 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCC
Q psy7680 36 YLSFDELTKFLVAAAQQNPSK 56 (102)
Q Consensus 36 y~~~~ei~~~l~~la~~~p~~ 56 (102)
..+.+++..-+..+.++||++
T Consensus 9 ~Ld~~qL~~lL~~l~~~HPei 29 (38)
T PF14483_consen 9 TLDKDQLQSLLQSLCERHPEI 29 (38)
T ss_dssp TS-HHHHHHHHHHHHHHSTHH
T ss_pred HcCHHHHHHHHHHHHHhChhH
Confidence 356789999999999999974
No 73
>PF11943 DUF3460: Protein of unknown function (DUF3460); InterPro: IPR021853 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.
Probab=32.92 E-value=41 Score=19.53 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhCCCCe
Q psy7680 40 DELTKFLVAAAQQNPSKV 57 (102)
Q Consensus 40 ~ei~~~l~~la~~~p~~v 57 (102)
+|+..||++|.+.+|++.
T Consensus 5 Se~TqFl~~lk~~~Pele 22 (60)
T PF11943_consen 5 SEITQFLNQLKAKHPELE 22 (60)
T ss_pred CHHHHHHHHHHHhCCchH
Confidence 578999999999999863
No 74
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=32.76 E-value=43 Score=21.06 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCCeEEEEccccCC
Q psy7680 42 LTKFLVAAAQQNPSKVKLHSIGKSVQ 67 (102)
Q Consensus 42 i~~~l~~la~~~p~~v~~~~iG~S~e 67 (102)
+.+.+..+.++||+-+.+...|.-+|
T Consensus 3 ~~~~y~~lk~k~~d~i~lf~~G~fYe 28 (113)
T PF01624_consen 3 FEQQYWELKEKYPDTIVLFQVGDFYE 28 (113)
T ss_dssp HHHHHHHHHCTSTTSEEEEEETTEEE
T ss_pred HHHHHHHHHhhCCCeEEEEEcCCEEE
Confidence 56778889999999999999998775
No 75
>PTZ00378 hypothetical protein; Provisional
Probab=31.50 E-value=66 Score=26.37 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHhCCC-CeEEEE
Q psy7680 37 LSFDELTKFLVAAAQQNPS-KVKLHS 61 (102)
Q Consensus 37 ~~~~ei~~~l~~la~~~p~-~v~~~~ 61 (102)
.|-+||..|+++|.++||. ++.++.
T Consensus 326 ~t~~elieyy~~li~kYP~iIvsIED 351 (518)
T PTZ00378 326 VTGDQLSEYVREQLQAVPDIVVYVED 351 (518)
T ss_pred CCHHHHHHHHHHHHHHCCCceEEEec
Confidence 5789999999999999998 445443
No 76
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=31.21 E-value=97 Score=22.62 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=30.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q psy7680 32 ENPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQ 67 (102)
Q Consensus 32 ~~~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~e 67 (102)
+|....++++|..++.+....-++++++..-.+|.+
T Consensus 125 ~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~~ 160 (231)
T COG0710 125 DFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSKE 160 (231)
T ss_pred cCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCHH
Confidence 567777889999999999999889999888777654
No 77
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=30.92 E-value=77 Score=15.76 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHHHhC
Q psy7680 35 HYLSFDELTKFLVAAAQQN 53 (102)
Q Consensus 35 ~y~~~~ei~~~l~~la~~~ 53 (102)
+-++-+|+..||+++++.+
T Consensus 16 rGY~~~eVD~fLd~v~~~~ 34 (34)
T TIGR03544 16 RGYDAAEVDAFLDRVADDL 34 (34)
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 4567799999999998753
No 78
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=30.48 E-value=1.4e+02 Score=18.66 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEecCCCCCCCCCCceEEEEccccCCC
Q psy7680 39 FDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDE 101 (102)
Q Consensus 39 ~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~v~i~ggiHg~E 101 (102)
.+-+.+||.++-..+-=.|.... |+..+.-++. |++.+. .......++...++.|-++
T Consensus 8 Na~Le~yL~~lL~~~G~~v~~y~-~q~~~~~Dvl---ItD~~~-~~~~~~~a~I~~s~~hiG~ 65 (92)
T PF09456_consen 8 NAYLESYLQRLLSYHGFQVQRYE-GQQPDADDVL---ITDYEP-QVAWPGRAVIRFSRRHIGP 65 (92)
T ss_dssp -HHHHHHHHHHHCTTTEEEEE-S-S----TT-EE---EEESS--S----SSEEEEEESS-SSS
T ss_pred hHHHHHHHHHHHHHCCcEEEEec-CCCCCCCcEE---EECCCc-ccCCcceEEEEEchHhCCC
Confidence 46789999999888764555555 6666666543 666553 2222223444455555443
No 79
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=30.28 E-value=66 Score=25.63 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEE
Q psy7680 36 YLSFDELTKFLVAAAQQNPSKVKLHS 61 (102)
Q Consensus 36 y~~~~ei~~~l~~la~~~p~~v~~~~ 61 (102)
-.+.+|+..|+.+|.++|| ++.++.
T Consensus 259 ~~~~~e~i~~~~~Lv~~Yp-ivsiED 283 (423)
T COG0148 259 SLTSEELIEYYLELVKKYP-IVSIED 283 (423)
T ss_pred ccCHHHHHHHHHHHHHhCC-EEEEcC
Confidence 4677899999999999999 666654
No 80
>PF13036 DUF3897: Protein of unknown function (DUF3897)
Probab=30.04 E-value=1e+02 Score=20.90 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=10.8
Q ss_pred HHHHHHHhhcCCCccc
Q psy7680 8 LCFLLCWVGCTTPVLV 23 (102)
Q Consensus 8 ~~~~~~~~~c~~p~~~ 23 (102)
+++.+++.||..+...
T Consensus 2 ~~~al~l~gC~~~v~~ 17 (180)
T PF13036_consen 2 LLSALLLTGCSSKVQY 17 (180)
T ss_pred HHHHHHHhcCCCCCcc
Confidence 4567778999864333
No 81
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=29.64 E-value=43 Score=21.05 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q psy7680 38 SFDELTKFLVAAAQQNPSKVKLHSIGKSVQ 67 (102)
Q Consensus 38 ~~~ei~~~l~~la~~~p~~v~~~~iG~S~e 67 (102)
-++++.+.++++.+++|+ .++...|.|..
T Consensus 46 ~~~~~~~~l~~~~~~~~~-~~i~itGHSLG 74 (140)
T PF01764_consen 46 LYDQILDALKELVEKYPD-YSIVITGHSLG 74 (140)
T ss_dssp HHHHHHHHHHHHHHHSTT-SEEEEEEETHH
T ss_pred HHHHHHHHHHHHHhcccC-ccchhhccchH
Confidence 356788899999999997 68888898874
No 82
>COG2868 Predicted ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=29.61 E-value=1e+02 Score=19.93 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhCCCCeEEEE
Q psy7680 42 LTKFLVAAAQQNPSKVKLHS 61 (102)
Q Consensus 42 i~~~l~~la~~~p~~v~~~~ 61 (102)
|..-|+.|+++||+.+++..
T Consensus 87 ~~~~l~~La~~Y~~~I~l~~ 106 (109)
T COG2868 87 MILGLKTLAESYPEYIKLVV 106 (109)
T ss_pred HHHHHHHHHHhccccEEEEE
Confidence 55579999999999888764
No 83
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=28.56 E-value=1.3e+02 Score=18.52 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=11.7
Q ss_pred hhHHHHHHHhhcCCCcccC
Q psy7680 6 ISLCFLLCWVGCTTPVLVN 24 (102)
Q Consensus 6 ~~~~~~~~~~~c~~p~~~~ 24 (102)
+.+-+++++..|....+..
T Consensus 10 ivlGLlvLIltC~Ad~~p~ 28 (88)
T PF15144_consen 10 IVLGLLVLILTCHADDKPN 28 (88)
T ss_pred HHHHHHHHHhhhccCCCCC
Confidence 3455667788888554443
No 84
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=27.90 E-value=74 Score=25.81 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC
Q psy7680 32 ENPHYLSFDELTKFLVAAAQQNP 54 (102)
Q Consensus 32 ~~~~y~~~~ei~~~l~~la~~~p 54 (102)
++..|.+++++.+||+..+++|.
T Consensus 76 ~~p~f~~~~~v~~Yl~~Ya~~f~ 98 (531)
T PF00743_consen 76 DYPDFPSHSEVLEYLESYAEHFG 98 (531)
T ss_dssp CCSSSEBHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHhhhC
Confidence 56789999999999999999874
No 85
>TIGR01922 purO_arch IMP cyclohydrolase. This model represents IMP cyclohydrolase, the final step in the biosynthesis of inosine monophosphate (IMP) in archaea. In bacteria this step is catalyzed by a bifunctional enzyme (purH).
Probab=27.78 E-value=1.4e+02 Score=21.37 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=19.7
Q ss_pred CCCCeEEEEccccCCCceEEEEEEecC
Q psy7680 53 NPSKVKLHSIGKSVQNRDLWALQISRN 79 (102)
Q Consensus 53 ~p~~v~~~~iG~S~eGR~i~~l~is~~ 79 (102)
||+ +...+|+|.+|++.-+-+|+..
T Consensus 2 Y~G--R~ivvG~s~dG~~~~aY~V~sR 26 (199)
T TIGR01922 2 YIG--RFLVVGKLEDGTPFAAYRVSSR 26 (199)
T ss_pred CCC--CEEEEccCCCCCeEEEEEEecC
Confidence 555 5678999999999888888753
No 86
>TIGR02722 lp_ uncharacterized proteobacterial lipoprotein. Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby.
Probab=27.60 E-value=2.1e+02 Score=19.79 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=10.4
Q ss_pred hHHHHHHHhhcCCC
Q psy7680 7 SLCFLLCWVGCTTP 20 (102)
Q Consensus 7 ~~~~~~~~~~c~~p 20 (102)
++++++++.||..+
T Consensus 8 ~~~~al~l~gC~~~ 21 (189)
T TIGR02722 8 VALLALLLSGCVSQ 21 (189)
T ss_pred HHHHHHHHccCCCC
Confidence 45566779999876
No 87
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=26.58 E-value=2e+02 Score=20.55 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEE
Q psy7680 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQI 76 (102)
Q Consensus 36 y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~i 76 (102)
...-....+||+++++..|+ +++....-| +=|.++...|
T Consensus 154 L~PCGaC~ewL~KIAe~np~-f~v~mFd~t-~c~~vy~~~i 192 (193)
T PF14421_consen 154 LFPCGACKEWLRKIAEANPD-FRVYMFDDT-RCRNVYILPI 192 (193)
T ss_pred CCcchHHHHHHHHHHHhCCC-eEEEEecCC-CcceEEEeec
Confidence 34557889999999999998 588887777 4466665543
No 88
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=26.44 E-value=74 Score=20.40 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC
Q psy7680 33 NPHYLSFDELTKFLVAAAQQNPSK 56 (102)
Q Consensus 33 ~~~y~~~~ei~~~l~~la~~~p~~ 56 (102)
-..|.+|+|....=++|..++|++
T Consensus 27 t~v~Rs~eeF~eLH~~L~~~FP~~ 50 (101)
T cd06896 27 SLTEKSFEQFSELHSQLQKQFPSL 50 (101)
T ss_pred ceeeecHHHHHHHHHHHHHHCccc
Confidence 356889999999999999999964
No 89
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=26.25 E-value=98 Score=20.51 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEE
Q psy7680 34 PHYLSFDELTKFLVAAAQQNPSKVKLHS 61 (102)
Q Consensus 34 ~~y~~~~ei~~~l~~la~~~p~~v~~~~ 61 (102)
....+.+.+.+|++.|.+.+|.+.++..
T Consensus 94 tg~~~~~sL~~WI~~Lq~~NP~L~~ipV 121 (126)
T PF14784_consen 94 TGTSDKDSLLSWIRGLQETNPNLAQIPV 121 (126)
T ss_pred ccCCCHHHHHHHHHHHHhhCCchhcceE
Confidence 4567889999999999999998755443
No 90
>PF04327 DUF464: Protein of unknown function (DUF464); InterPro: IPR007422 This entry is represented by Bacteriophage Cp-1, Orf13. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2IDL_A 2G0J_D 2G0I_B 2P92_B 1S12_C.
Probab=26.22 E-value=1.2e+02 Score=18.94 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhCCCCeEE
Q psy7680 42 LTKFLVAAAQQNPSKVKL 59 (102)
Q Consensus 42 i~~~l~~la~~~p~~v~~ 59 (102)
+..-|+.++++||+.+++
T Consensus 86 ~~~gL~~i~~~Yp~~Iki 103 (103)
T PF04327_consen 86 LLLGLKSIEEQYPDYIKI 103 (103)
T ss_dssp HHHHHHHHHHHTTTTEEE
T ss_pred HHHHHHHHHHHhhhhccC
Confidence 444688999999998764
No 91
>KOG2670|consensus
Probab=25.35 E-value=94 Score=24.41 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=25.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCeEEEEc
Q psy7680 32 ENPHYLSFDELTKFLVAAAQQNPSKVKLHSI 62 (102)
Q Consensus 32 ~~~~y~~~~ei~~~l~~la~~~p~~v~~~~i 62 (102)
+..+|.+.+++...++.+.+.|| +++++..
T Consensus 268 d~s~~~s~~~L~dlY~~~~k~yP-ivSiEDP 297 (433)
T KOG2670|consen 268 DPSRWLSGDQLADLYKSFIKDYP-IVSIEDP 297 (433)
T ss_pred CcccccCHHHHHHHHHHHHhcCC-eeeecCC
Confidence 55789999999999999999999 4777653
No 92
>COG3224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.26 E-value=1.3e+02 Score=21.49 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCeEEEEccccCCCceEEEEEEe
Q psy7680 33 NPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQIS 77 (102)
Q Consensus 33 ~~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~is 77 (102)
-.++..|.+-.+.++.+++.||+...-..+-.+-.+|.-+.+.+-
T Consensus 21 Pg~ea~~law~~ei~~l~~~~PG~igS~ii~p~~G~~~e~~~ifR 65 (195)
T COG3224 21 PGHEAIFLAWQEEIKALARKYPGYIGSGIIRPQAGDRFEYETIFR 65 (195)
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCccccCccccCCCCceeEEEEEE
Confidence 466778899999999999999998777777777777866666554
No 93
>COG3500 Phage protein D [General function prediction only]
Probab=25.05 E-value=79 Score=24.65 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCeEEEE---------ccccCCCceEEEEEEecC
Q psy7680 43 TKFLVAAAQQNPSKVKLHS---------IGKSVQNRDLWALQISRN 79 (102)
Q Consensus 43 ~~~l~~la~~~p~~v~~~~---------iG~S~eGR~i~~l~is~~ 79 (102)
.+||++||++|..++.+.. -|+|..|++|.-+.+...
T Consensus 156 ~~FL~rLA~~y~~i~~v~~~~Lif~~~~~~~s~tg~~l~~v~l~~~ 201 (350)
T COG3500 156 INFLLRLAERYGAIAKVKEGRLIFKRLGESGSATGRRLPPVNLLRE 201 (350)
T ss_pred HHHHHHHHHHcCCEEEecCceEEEEeCCCCCCcceeeccceecchh
Confidence 4699999999998777543 267889999998888753
No 94
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=24.95 E-value=1.1e+02 Score=15.78 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHHHH
Q psy7680 36 YLSFDELTKFLVAAAQ 51 (102)
Q Consensus 36 y~~~~ei~~~l~~la~ 51 (102)
+.+-+|+.+|+.+|.+
T Consensus 11 ~aspeel~~Y~~~L~~ 26 (36)
T PF00159_consen 11 FASPEELAQYYAALRH 26 (36)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4678999999999865
No 95
>PF12164 SporV_AA: Stage V sporulation protein AA; InterPro: IPR021997 This domain family is found in bacteria - primarily Firmicutes, and is approximately 90 amino acids in length. There is a single completely conserved residue G that may be functionally important. Most annotation associated with this domain suggests that it is involved in the fifth stage of sporulation, however there is little publication to back this up. ; PDB: 3G74_B.
Probab=24.45 E-value=1.3e+02 Score=18.58 Aligned_cols=24 Identities=17% Similarity=0.502 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcccc
Q psy7680 41 ELTKFLVAAAQQNPSKVKLHSIGKS 65 (102)
Q Consensus 41 ei~~~l~~la~~~p~~v~~~~iG~S 65 (102)
++..-++.+.+.+|+ +.+..+|.+
T Consensus 58 svm~II~~I~~~~p~-l~I~~iGe~ 81 (93)
T PF12164_consen 58 SVMKIIEKIQEEYPN-LDIQNIGET 81 (93)
T ss_dssp EHHHHHHHHHHH-SS-EEEEE-S-S
T ss_pred EHHHHHHHHHHHCCC-cEEEEcCCC
Confidence 467788899999998 699999986
No 96
>PRK14553 hypothetical protein; Provisional
Probab=23.86 E-value=1.6e+02 Score=18.62 Aligned_cols=21 Identities=29% Similarity=0.181 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCCCeEEEE
Q psy7680 41 ELTKFLVAAAQQNPSKVKLHS 61 (102)
Q Consensus 41 ei~~~l~~la~~~p~~v~~~~ 61 (102)
.|.--|+.++++||+.+++..
T Consensus 85 ~~~~gl~~i~~~Yp~~Iki~~ 105 (108)
T PRK14553 85 TLELGLKSLEFQYPKYIKLIE 105 (108)
T ss_pred HHHHHHHHHHHhCcccEEEEE
Confidence 344458899999999888764
No 97
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=23.52 E-value=1.3e+02 Score=18.83 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=19.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC
Q psy7680 33 NPHYLSFDELTKFLVAAAQQNPSK 56 (102)
Q Consensus 33 ~~~y~~~~ei~~~l~~la~~~p~~ 56 (102)
+.......++..+|++|.+.+|++
T Consensus 33 ~~~~a~R~~~k~~L~~LE~~~P~~ 56 (104)
T TIGR00269 33 YSSLSVRARIRDFLYDLENKKPGV 56 (104)
T ss_pred CCCCCchHHHHHHHHHHHHHCcCh
Confidence 345566789999999999999984
No 98
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=22.39 E-value=76 Score=20.86 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC
Q psy7680 32 ENPHYLSFDELTKFLVAAAQQNPS 55 (102)
Q Consensus 32 ~~~~y~~~~ei~~~l~~la~~~p~ 55 (102)
.+.-|.+|+|..++-++|.+.||-
T Consensus 33 ~~~iyR~y~eF~~lh~~L~~~FP~ 56 (121)
T cd06889 33 ELFVYRSLEEFRKLHKQLKEKFPV 56 (121)
T ss_pred EEEEEEEHHHHHHHHHHHHHHCCc
Confidence 356799999999999999999994
No 99
>KOG0087|consensus
Probab=22.37 E-value=97 Score=22.62 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=20.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC
Q psy7680 32 ENPHYLSFDELTKFLVAAAQQNPS 55 (102)
Q Consensus 32 ~~~~y~~~~ei~~~l~~la~~~p~ 55 (102)
|-.+..||+-+.+||++|....+.
T Consensus 95 DITr~~Tfenv~rWL~ELRdhad~ 118 (222)
T KOG0087|consen 95 DITRRQTFENVERWLKELRDHADS 118 (222)
T ss_pred echhHHHHHHHHHHHHHHHhcCCC
Confidence 557888999999999999987744
No 100
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=22.31 E-value=1.7e+02 Score=16.74 Aligned_cols=36 Identities=17% Similarity=0.055 Sum_probs=20.3
Q ss_pred ccCCCceEEEEEEecCC-CCCCCCCCceEEEEccccC
Q psy7680 64 KSVQNRDLWALQISRNV-ASGRNLLKPMFKYVANIHG 99 (102)
Q Consensus 64 ~S~eGR~i~~l~is~~~-~~~~~~~kp~v~i~ggiHg 99 (102)
.|..|--|-+-+|..+. .......||.|++.-|+-+
T Consensus 18 ~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ 54 (63)
T PF04083_consen 18 TTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQ 54 (63)
T ss_dssp E-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT-
T ss_pred EeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCccc
Confidence 57788888888898655 1134567888888766543
No 101
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=21.34 E-value=1.4e+02 Score=20.36 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEccccC
Q psy7680 40 DELTKFLVAAAQQNPSKVKLHSIGKSV 66 (102)
Q Consensus 40 ~ei~~~l~~la~~~p~~v~~~~iG~S~ 66 (102)
.++.+.+++.++++|+ .++.-+|.|.
T Consensus 65 ~~~~~~i~~~~~~CP~-~kivl~GYSQ 90 (179)
T PF01083_consen 65 ANLVRLIEEYAARCPN-TKIVLAGYSQ 90 (179)
T ss_dssp HHHHHHHHHHHHHSTT-SEEEEEEETH
T ss_pred HHHHHHHHHHHHhCCC-CCEEEEeccc
Confidence 5688899999999997 5888888886
No 102
>PF07538 ChW: Clostridial hydrophobic W; InterPro: IPR006637 This hydrophobic repeat is found in a number of Chlostridium proteins. It contains a conserved tryptophan residue.
Probab=20.49 E-value=1.4e+02 Score=15.09 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.1
Q ss_pred EEccccCCCceEEEEEEe
Q psy7680 60 HSIGKSVQNRDLWALQIS 77 (102)
Q Consensus 60 ~~iG~S~eGR~i~~l~is 77 (102)
...|.+-++++|.+++|.
T Consensus 15 ~~aGt~G~~~rlEai~i~ 32 (36)
T PF07538_consen 15 QTAGTTGQGLRLEAIKIK 32 (36)
T ss_pred eecccCCCCcEEEEEEEE
Confidence 356888899999999986
No 103
>KOG1399|consensus
Probab=20.38 E-value=4.5e+02 Score=21.01 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC
Q psy7680 34 PHYLSFDELTKFLVAAAQQNP 54 (102)
Q Consensus 34 ~~y~~~~ei~~~l~~la~~~p 54 (102)
..|+++.|+.+||+..|+.+.
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~ 104 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFD 104 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcC
Confidence 455999999999999999986
No 104
>PRK13576 3-dehydroquinate dehydratase; Provisional
Probab=20.11 E-value=2.5e+02 Score=20.06 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=29.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q psy7680 32 ENPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSV 66 (102)
Q Consensus 32 ~~~~y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~ 66 (102)
+|....+.+||...+++..+ .++++++.+..++.
T Consensus 111 dF~~TP~~~eL~~~l~~m~~-gaDI~KiA~mp~~~ 144 (216)
T PRK13576 111 YFDYLPTSEEVKEIVSKFYE-KAFSVKIAVLGLKG 144 (216)
T ss_pred CCCCCcCHHHHHHHHHHHHh-cCCEEEEEeCCCCc
Confidence 67888899999999999875 78899999987764
Done!