RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7680
(102 letters)
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 88.8 bits (220), Expect = 2e-22
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 7 SLCFLLCWVGCT--------TPVLVNNDPEPFLENPHYLSFDELTKFLVAAAQQNPSKVK 58
+L L +G + E FL+ PHY S ++L + P++ K
Sbjct: 3 TLGLLFASIGIAVLAMGVPHCRGYTIKEDESFLQQPHYASQEQLEDLFAGLEKAYPNQAK 62
Query: 59 LHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102
+H +G+S++ R+L ALQISRN S RNLL P KY+AN+HGDE
Sbjct: 63 VHFLGRSLEGRNLLALQISRNTRS-RNLLTPPVKYIANMHGDET 105
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 85.7 bits (212), Expect = 2e-21
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
+ F ++ FL A + PS +L+S+GKSV+ R+L+ ++IS N +P FKY+
Sbjct: 9 RHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGI-HEAGEPEFKYI 67
Query: 95 ANIHGDEV 102
N+HG+EV
Sbjct: 68 GNMHGNEV 75
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 83.5 bits (206), Expect = 1e-20
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
+Y + + FL AQ S LHSIGKSV+ R+LW L + R + P FKYV
Sbjct: 4 NYHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRF-PKEHRIGIPEFKYV 62
Query: 95 ANIHGDEV 102
AN+HGDE
Sbjct: 63 ANMHGDET 70
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 82.4 bits (203), Expect = 4e-20
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 36 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVA 95
+ +D+L + L + P +++SIG+SV+ R L+ L+ S + L+P KYV
Sbjct: 6 HHRYDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFSDHP-GIHEPLEPEVKYVG 64
Query: 96 NIHGDEV 102
N+HG+E
Sbjct: 65 NMHGNEA 71
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 75.8 bits (187), Expect = 4e-18
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
Y +++E+ + A P+ VK SIGKS + R+LWA++IS NV + N +P Y
Sbjct: 8 GYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDEN--EPEVLYT 65
Query: 95 ANIHGDEV 102
A H E
Sbjct: 66 ALHHAREH 73
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 63.2 bits (154), Expect = 2e-13
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
+Y + + ++L ++ P + + +S + R + ++IS N KP+
Sbjct: 5 NYQELEVIDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKISTTNFEDEN--KPVIFID 62
Query: 95 ANIHGDE 101
IH E
Sbjct: 63 GGIHARE 69
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 61.8 bits (150), Expect = 6e-13
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
S++E+ +L A++ P+ V + GKS + R + L+IS + KP+
Sbjct: 120 KIHSYEEVDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRISTTNFQDAS--KPVVMMQ 177
Query: 95 ANIHGDE 101
+ +H E
Sbjct: 178 SLLHCRE 184
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 59.0 bits (143), Expect = 6e-12
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
Y + DE+ F+ ++P V IG+S + R ++ L+ S ++ +P
Sbjct: 11 TYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSN-----RPAIWID 65
Query: 95 ANIHGDE 101
IH E
Sbjct: 66 LGIHSRE 72
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 59.0 bits (143), Expect = 7e-12
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
Y + +E+ F+ ++P+ V IG+S + R ++ L+ S ++ +P
Sbjct: 106 TYHTLEEIYDFMDILVAEHPALVSKLQIGRSYEGRPIYVLKFSTGGSN-----RPAIWID 160
Query: 95 ANIHGDE 101
+ IH E
Sbjct: 161 SGIHSRE 167
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 58.6 bits (142), Expect = 8e-12
Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
Y +++ + + +NP + +IG + +++ L++ + + KP
Sbjct: 8 KYNNWETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPN-----KPAIFMD 62
Query: 95 ANIHGDE 101
H E
Sbjct: 63 CGFHARE 69
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 58.1 bits (141), Expect = 1e-11
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
Y S + + + A P + IG S +NR ++ L+ S G +P
Sbjct: 9 AYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTG--KGVR--RPAVWLN 64
Query: 95 ANIHGDE 101
A IH E
Sbjct: 65 AGIHSRE 71
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 57.4 bits (139), Expect = 2e-11
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
Y S +E+ ++ ++ P V+ IG S + L+ L++S+ K
Sbjct: 8 QYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRA----KNAMWID 63
Query: 95 ANIHGDE 101
IH E
Sbjct: 64 CGIHARE 70
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 57.5 bits (139), Expect = 2e-11
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
Y ++ + + A +NP+ + IG + + R ++ L++ + + KP
Sbjct: 103 KYNKWETIEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAGQN-----KPAIFMD 157
Query: 95 ANIHGDE 101
H E
Sbjct: 158 CGFHARE 164
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 57.1 bits (138), Expect = 3e-11
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
Y S +E+ ++ ++ P V+ IG S + L+ L++S+ K
Sbjct: 100 QYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRA----KNAMWID 155
Query: 95 ANIHGDE 101
IH E
Sbjct: 156 CGIHARE 162
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 56.7 bits (137), Expect = 4e-11
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
Y S + + + A P + IG S +NR ++ L+ S +G+ + +P
Sbjct: 105 AYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFS----TGKGVRRPAVWLN 160
Query: 95 ANIHGDE 101
A IH E
Sbjct: 161 AGIHSRE 167
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 55.2 bits (133), Expect = 1e-10
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
Y + +E+++ + ++P V +IG S +NR + L+ S KP
Sbjct: 104 AYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGD------KPAIWLD 157
Query: 95 ANIHGDE 101
A IH E
Sbjct: 158 AGIHARE 164
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 54.3 bits (131), Expect = 2e-10
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
Y + +E+++ + ++P V +IG S +NR + L+ S KP
Sbjct: 5 AYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGD------KPAIWLD 58
Query: 95 ANIHGDE 101
A IH E
Sbjct: 59 AGIHARE 65
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 37.5 bits (86), Expect = 3e-04
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 35 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 94
S + ++FL A Q + + +G++V+ R + + + +G K +
Sbjct: 131 EPYSEERHSEFL--GAVQQMPQASVVELGRTVEGRPMSLVVLGTPDEAGAA--KKKVWII 186
Query: 95 ANIHGDEV 102
A H E
Sbjct: 187 ARQHPGES 194
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 33.6 bits (76), Expect = 0.005
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 51 QQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEV 102
V+ ++G SVQ RD+ L++ R+ S +A H E
Sbjct: 138 ALGIEGVERLAVGTSVQGRDIELLRVRRHPDS-----HLKLWVIAQQHPGEH 184
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 30.5 bits (68), Expect = 0.062
Identities = 9/63 (14%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 40 DELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHG 99
+++ F A++ +L ++ + D +A+ + ++ + + P + HG
Sbjct: 23 NDIDAFYAQLAEEVN---RLGLKKNTLGSVDSFAINLYQSASQRSD--LPSLLISSGFHG 77
Query: 100 DEV 102
+E
Sbjct: 78 EEA 80
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.10
Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 25/99 (25%)
Query: 8 LCFLLCWVGCTTPVLVNNDPEPFLENPHYLSFDELTKFLVAAAQQNPSKVKLHSI--GKS 65
L + W ++ +D + ++L K+ + Q S + + SI
Sbjct: 392 LSLI--WFD-----VIKSDVMVVV--------NKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 66 VQNRDLWAL--------QISRNVASGRNLLKPMFKYVAN 96
V+ + +AL I + S + + +Y +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.24
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 39 FDELTKFLVAA--------AQQNPSKVKLHSIGKSVQN-RDLWALQISRNVASGRNLLKP 89
++ NP + +H G+ + R+ ++ I + G+ +
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 90 MFKYV 94
+FK +
Sbjct: 1706 IFKEI 1710
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 27.0 bits (59), Expect = 1.1
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 40 DELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHG 99
++ +F A + ++ L S L + ++ P A HG
Sbjct: 22 TDIQRFYSLLAIE-TERLGLGSKILGQAGH--HPLYLLQSPGQKAG--LPNLLISAGFHG 76
Query: 100 DEV 102
+E
Sbjct: 77 EES 79
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center
for structural genomics, protein struc initiative,
MCSG, lyase; 1.95A {Pseudomonas syringae PV}
Length = 273
Score = 26.2 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 23 VNNDPEPFLENPHYLSFDELT 43
V E FL N L FDE+T
Sbjct: 62 VPGPDEHFLINAFGLLFDEIT 82
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex;
HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP:
d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Length = 356
Score = 25.6 bits (56), Expect = 3.8
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 35 HYLSFDELTKFLVAAAQQNP 54
L+ DE K AA
Sbjct: 178 SRLTADEYLKIYQAAESSPC 197
>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding
protein; 2.32A {Trichomonas vaginalis} SCOP: e.47.1.1
PDB: 1q88_A 1q89_A
Length = 221
Score = 25.3 bits (54), Expect = 4.2
Identities = 10/65 (15%), Positives = 20/65 (30%)
Query: 32 ENPHYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMF 91
+ S +L KFL +K+ S+ N+ W + + N +
Sbjct: 88 QEEQTKSKADLYKFLAMFGPYETIMLKIASLLLISNNKGHWLTFDPQAEKNANNQRDSIS 147
Query: 92 KYVAN 96
+
Sbjct: 148 GWFDQ 152
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel,
ligand binding protein; HET: SAM; 2.20A {Staphylococcus
aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Length = 340
Score = 25.2 bits (56), Expect = 4.6
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 29 PFLENPHYLSFDELTKFLVAAAQQNPSKVKL 59
FL L+FDE+ + A+ K+++
Sbjct: 42 VFLPKNELLTFDEMARIAKVYAELGVKKIRI 72
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex;
HET: PTR; 2.80A {Enterobacteria phage lambda} PDB:
1p7d_A*
Length = 283
Score = 24.7 bits (54), Expect = 7.0
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 35 HYLSFDELTKFLVAAAQQNP 54
L+ DE K AA
Sbjct: 105 SRLTADEYLKIYQAAESSPC 124
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism,
sugar donar complex rossmann fold, GT-B fold,
glycosyltansferase, UDP-glucose; HET: UDP LCN NHF;
2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Length = 816
Score = 24.6 bits (53), Expect = 8.7
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 50 AQQNPSKVKLHSIGKSV-----QNRDLWALQISRNVASGRNLLKP 89
A ++HS + + R+ +SR A G+ +L+
Sbjct: 2 ANAERMITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQ 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.419
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,479,940
Number of extensions: 70279
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 29
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)