BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7682
(383 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q98TW1|NCOA2_DANRE Nuclear receptor coactivator 2 OS=Danio rerio GN=ncoa2 PE=1 SV=1
Length = 1505
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/275 (40%), Positives = 159/275 (57%), Gaps = 53/275 (19%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSS-- 113
EKR RE E+ YIEELAELI A+F + + + VKPDKCAIL+ETV QIR IK+QE ++
Sbjct: 36 EKRNREHESKYIEELAELI-FANFND-IDNFNVKPDKCAILKETVKQIRQIKEQEKAAAA 93
Query: 114 --DAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQ 171
D VQ+ +VSS+ +VI + LGP++LEAL+GF FVVN +G + F +EN+ ++RY+++
Sbjct: 94 NEDEVQKADVSSTGQSVIDKDALGPMMLEALDGFFFVVNMEGNIVFVSENVTQYLRYNQE 153
Query: 172 EVLGKSVYNLIHHGDHARFHNCLVPSSHQVNA--WTSDSGGQAGKRPSLTASTPNR---T 226
E++ SVY+++H GDHA F L+P SH VN W+S++ P R T
Sbjct: 154 ELMNTSVYSILHVGDHAEFIKNLLPKSH-VNGVPWSSEN--------------PRRNSHT 198
Query: 227 FNIRLLISSTHLTAGLSRAGGENGQD----------------DSGDVSSEG---GPCLMC 267
FN R+L+ + H A E QD + + EG CL+C
Sbjct: 199 FNCRMLV-NPHSEA-------EETQDHEAQQKYETMQCFAVSEPKSIKEEGEDFQSCLIC 250
Query: 268 VARRIPPTDKQLSAPIEQFTMKLDRSGTIIGMDTS 302
VARR+P ++ + E FT + D G I +DTS
Sbjct: 251 VARRVPMKERPMLPTQESFTTRQDLQGKITSLDTS 285
>sp|Q9W705|NCOA2_XENLA Nuclear receptor coactivator 2 OS=Xenopus laevis GN=ncoa2 PE=2 SV=1
Length = 1516
Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 107/269 (39%), Positives = 150/269 (55%), Gaps = 41/269 (15%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSS-- 113
EKR REQEN YIEELAELI A+F + + +L KPDKCAIL+ETV QIR IK+ E ++
Sbjct: 32 EKRNREQENKYIEELAELI-FANFND-IDNLNFKPDKCAILKETVKQIRQIKEHEKTAAA 89
Query: 114 --DAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQ 171
D VQ+ +VSS+ +VI + LGP++LEAL+GF FVVN +G V F +EN+ ++RY+++
Sbjct: 90 NEDEVQKADVSSTGQSVIDKDALGPMMLEALDGFFFVVNREGNVVFVSENVTQYLRYNQE 149
Query: 172 EVLGKSVYNLIHHGDHARFHNCLVPSSHQVNAWTSDSGGQAGKRPSLTASTPNR---TFN 228
E++ SVY+++H GDH+ F L+P SL P R TFN
Sbjct: 150 ELMNTSVYSILHVGDHSEFIKNLLPK-------------------SLVNGVPRRNSHTFN 190
Query: 229 IRLLISSTHLTAGLSRAGGENGQ----------DDSGDVSSEG---GPCLMCVARRIPPT 275
R+L+ G E Q + EG CL+CVARR+P
Sbjct: 191 CRMLVKPMMECEEERHDGQETHQKYESMQCFAVSQPKSIKEEGEDFQSCLICVARRVPVK 250
Query: 276 DKQLSAPIEQFTMKLDRSGTIIGMDTSGV 304
++ + P E FT + D G I +DT+ +
Sbjct: 251 ERPVPPPSESFTTRQDFQGKITSLDTTSM 279
>sp|B5DE09|NCOA2_XENTR Nuclear receptor coactivator 2 OS=Xenopus tropicalis GN=ncoa2 PE=2
SV=1
Length = 1440
Score = 177 bits (450), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 106/269 (39%), Positives = 150/269 (55%), Gaps = 41/269 (15%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSS-- 113
EKR REQEN YIEELAELI A+F + + +L KPDKCAIL+ETV QIR IK+ E ++
Sbjct: 35 EKRNREQENKYIEELAELI-FANFND-IDNLNFKPDKCAILKETVKQIRQIKEHEKTAAA 92
Query: 114 --DAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQ 171
D VQ+ +VSS+ +VI + LGP++LEAL+GF FVVN +G V F +EN+ ++RY+++
Sbjct: 93 NEDEVQKADVSSTGQSVIDKDALGPMMLEALDGFFFVVNREGNVVFVSENVTQYLRYNQE 152
Query: 172 EVLGKSVYNLIHHGDHARFHNCLVPSSHQVNAWTSDSGGQAGKRPSLTASTPNR---TFN 228
E++ SVY+++H GDH+ F L+P S+ P R TFN
Sbjct: 153 ELMNTSVYSILHVGDHSEFIKNLLPK-------------------SIVNGGPRRNSHTFN 193
Query: 229 IRLLISSTHLTAGLSRAGGENGQ----------DDSGDVSSEG---GPCLMCVARRIPPT 275
R+L+ G E Q + EG CL+CVARR+P
Sbjct: 194 CRMLVKPMMECEEEGHDGQETHQKYETMQCFAVSQPKSIKEEGEDFQSCLICVARRVPMK 253
Query: 276 DKQLSAPIEQFTMKLDRSGTIIGMDTSGV 304
++ + P E FT + D G I +DT+ +
Sbjct: 254 ERPVPPPSESFTTRQDLQGKITSLDTTNM 282
>sp|Q4PJW2|NCOA1_PIG Nuclear receptor coactivator 1 OS=Sus scrofa GN=NCOA1 PE=2 SV=1
Length = 1440
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/275 (41%), Positives = 156/275 (56%), Gaps = 52/275 (18%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE----T 111
EKRRREQEN Y+EELAEL+SA + SL+VKPDKC IL++TV+QI+ +K+ E T
Sbjct: 32 EKRRREQENKYLEELAELLSAN--ISDIDSLSVKPDKCKILKKTVDQIQLMKRMEQEKST 89
Query: 112 SSDAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQ 171
+ D VQ+ ++SSS VI E LGPLLLEAL+GF FVVN +G + F +EN+ S++ Y+++
Sbjct: 90 TDDEVQKSDISSSSQGVIEKESLGPLLLEALDGFFFVVNCEGRIVFVSENVTSYLGYNQE 149
Query: 172 EVLGKSVYNLIHHGDHARFHNCLVPSSHQVNA--WTSDSGGQAGKRPSLTASTPNRTFNI 229
E++ SVY+++H GDHA F L+P S VN W + A +R S TFN
Sbjct: 150 ELMNTSVYSILHVGDHAEFVKNLLPKSL-VNGVPWPQE----ATRRNS-------HTFNC 197
Query: 230 RLLISSTHLTAGLSRAGGENG--------------------QDDSGDVSSEGGPCLMCVA 269
R+LI G EN Q+D D S CL+C+A
Sbjct: 198 RMLIHPP------DEPGTENQEACQRYEVMQCFTVSQPKSIQEDGEDFQS----CLICIA 247
Query: 270 RRIPPTDKQLSAPIEQFTMKLDRSGTIIGMDTSGV 304
RR+P + +E F K D +G II +DTS +
Sbjct: 248 RRLPRPPAIMG--VESFMTKQDTTGKIISIDTSSL 280
>sp|Q9WUI9|NCOA2_RAT Nuclear receptor coactivator 2 OS=Rattus norvegicus GN=Ncoa2 PE=1
SV=1
Length = 1465
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 155/273 (56%), Gaps = 47/273 (17%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSS-- 113
EKR REQEN YIEELAELI A+F + + + KPDKCAIL+ETV QIR IK+QE ++
Sbjct: 35 EKRNREQENKYIEELAELI-FANFND-IDNFNFKPDKCAILKETVKQIRQIKEQEKAAAA 92
Query: 114 --DAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQ 171
D VQ+ +VSS+ VI + LGP++LEAL+GF FVVN +G V F +EN+ ++RY+++
Sbjct: 93 NIDEVQKSDVSSTGQGVIDKDALGPMMLEALDGFFFVVNLEGNVVFVSENVTQYLRYNQE 152
Query: 172 EVLGKSVYNLIHHGDHARFHNCLVPSSHQVN--AWTSDSGGQAGKRPSLTASTPNRTFNI 229
E++ KSVY+++H GDH F L+P S VN +WT G+ +R S TFN
Sbjct: 153 ELMNKSVYSILHVGDHTEFVKNLLPKS-MVNGGSWT----GEPPRRNS-------HTFNC 200
Query: 230 RLLISSTHLTAGLSRAGGENGQDD-----------------SGDVSSEG---GPCLMCVA 269
R+L+ + E G D+ + EG CL+CVA
Sbjct: 201 RMLVKPLPDSE-------EEGHDNQEAHQKYETMQCFAVSQPKSIKEEGEDKQSCLICVA 253
Query: 270 RRIPPTDKQLSAPIEQFTMKLDRSGTIIGMDTS 302
RR+P ++ E FT + D G I +DTS
Sbjct: 254 RRVPMKERPALPSSESFTTRQDLQGKITFLDTS 286
>sp|Q15596|NCOA2_HUMAN Nuclear receptor coactivator 2 OS=Homo sapiens GN=NCOA2 PE=1 SV=2
Length = 1464
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 153/271 (56%), Gaps = 43/271 (15%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSS-- 113
EKR REQEN YIEELAELI A+F + + + KPDKCAIL+ETV QIR IK+QE ++
Sbjct: 35 EKRNREQENKYIEELAELI-FANFND-IDNFNFKPDKCAILKETVKQIRQIKEQEKAAAA 92
Query: 114 --DAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQ 171
D VQ+ +VSS+ VI + LGP++LEAL+GF FVVN +G V F +EN+ ++RY+++
Sbjct: 93 NIDEVQKSDVSSTGQGVIDKDALGPMMLEALDGFFFVVNLEGNVVFVSENVTQYLRYNQE 152
Query: 172 EVLGKSVYNLIHHGDHARFHNCLVPSSHQVNAWTSDSGGQAGKRPSLTASTPNRTFNIRL 231
E++ KSVY+++H GDH F L+P S + G +G+ P + TFN R+
Sbjct: 153 ELMNKSVYSILHVGDHTEFVKNLLPKS------IVNGGSWSGEPPRRNS----HTFNCRM 202
Query: 232 LISSTHLTAGLSRAGGENGQDD-----------------SGDVSSEG---GPCLMCVARR 271
L+ + E G D+ + EG CL+CVARR
Sbjct: 203 LVKPLPDSE-------EEGHDNQEAHQKYETMQCFAVSQPKSIKEEGEDLQSCLICVARR 255
Query: 272 IPPTDKQLSAPIEQFTMKLDRSGTIIGMDTS 302
+P ++ + E FT + D G I +DTS
Sbjct: 256 VPMKERPVLPSSESFTTRQDLQGKITSLDTS 286
>sp|Q61026|NCOA2_MOUSE Nuclear receptor coactivator 2 OS=Mus musculus GN=Ncoa2 PE=1 SV=3
Length = 1462
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 154/268 (57%), Gaps = 37/268 (13%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSS-- 113
EKR REQEN YIEELAELI A+F + + + KPDKCAIL+ETV QIR IK+QE ++
Sbjct: 35 EKRNREQENKYIEELAELI-FANFND-IDNFNFKPDKCAILKETVKQIRQIKEQEKAAAA 92
Query: 114 --DAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQ 171
D VQ+ +VSS+ VI + LGP++LEAL+GF FVVN +G V F +EN+ ++RY+++
Sbjct: 93 NIDEVQKSDVSSTGQGVIDKDALGPMMLEALDGFFFVVNLEGSVVFVSENVTQYLRYNQE 152
Query: 172 EVLGKSVYNLIHHGDHARFHNCLVPSSHQVNAWTSDSGGQAGKRPSLTASTPNRTFNIRL 231
E++ KSVY+++H GDH F L+P S VN G +G+ P ++ TFN R+
Sbjct: 153 ELMNKSVYSILHVGDHTEFVKNLLPKS-MVNG-----GSWSGEPPRRSS----HTFNCRM 202
Query: 232 LISSTHLTAGLSRAGGENGQ-----------------DDSGDVSSEGGPCLMCVARRIPP 274
L+ + E Q ++ D+ S CL+CVARR+P
Sbjct: 203 LVKPLPDSEEEGHDSQEAHQKYEAMQCFAVSQPKSIKEEGEDLQS----CLICVARRVPM 258
Query: 275 TDKQLSAPIEQFTMKLDRSGTIIGMDTS 302
++ E FT + D G I +DTS
Sbjct: 259 KERPTLPSSESFTTRQDLQGKITSLDTS 286
>sp|Q15788|NCOA1_HUMAN Nuclear receptor coactivator 1 OS=Homo sapiens GN=NCOA1 PE=1 SV=3
Length = 1441
Score = 175 bits (444), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 114/275 (41%), Positives = 157/275 (57%), Gaps = 52/275 (18%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE----T 111
EKRRREQEN Y+EELAEL+SA + SL+VKPDKC IL++TV+QI+ +K+ E T
Sbjct: 32 EKRRREQENKYLEELAELLSAN--ISDIDSLSVKPDKCKILKKTVDQIQLMKRMEQEKST 89
Query: 112 SSDAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQ 171
+ D VQ+ ++SSS VI E LGPLLLEAL+GF FVVN +G + F +EN+ S++ Y+++
Sbjct: 90 TDDDVQKSDISSSSQGVIEKESLGPLLLEALDGFFFVVNCEGRIVFVSENVTSYLGYNQE 149
Query: 172 EVLGKSVYNLIHHGDHARFHNCLVPSSHQVNA--WTSDSGGQAGKRPSLTASTPNRTFNI 229
E++ SVY+++H GDHA F L+P S VN W + A +R S TFN
Sbjct: 150 ELMNTSVYSILHVGDHAEFVKNLLPKSL-VNGVPWPQE----ATRRNS-------HTFNC 197
Query: 230 RLLISSTHLTAGLSRAGGENG--------------------QDDSGDVSSEGGPCLMCVA 269
R+LI G EN Q+D D S CL+C+A
Sbjct: 198 RMLIHPP------DEPGTENQEACQRYEVMQCFTVSQPKSIQEDGEDFQS----CLICIA 247
Query: 270 RRIPPTDKQLSAPIEQFTMKLDRSGTIIGMDTSGV 304
RR+ P ++ +E F K D +G II +DTS +
Sbjct: 248 RRL-PRPPAITG-VESFMTKQDTTGKIISIDTSSL 280
>sp|P70365|NCOA1_MOUSE Nuclear receptor coactivator 1 OS=Mus musculus GN=Ncoa1 PE=1 SV=2
Length = 1447
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 114/275 (41%), Positives = 157/275 (57%), Gaps = 52/275 (18%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE----T 111
EKRRREQEN Y+EELAEL+SA + SL+VKPDKC IL++TV+QI+ +K+ E T
Sbjct: 32 EKRRREQENKYLEELAELLSAN--ISDIDSLSVKPDKCKILKKTVDQIQLMKRMEQEKST 89
Query: 112 SSDAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQ 171
+ D VQ+ ++SSS VI E LGPLLLEAL+GF FVVN +G + F +EN+ S++ Y+++
Sbjct: 90 TDDDVQKSDISSSSQGVIEKESLGPLLLEALDGFFFVVNCEGRIVFVSENVTSYLGYNQE 149
Query: 172 EVLGKSVYNLIHHGDHARFHNCLVPSSHQVNA--WTSDSGGQAGKRPSLTASTPNRTFNI 229
E++ SVY+++H GDHA F L+P S VN W + A +R S TFN
Sbjct: 150 ELMNTSVYSILHVGDHAEFVKNLLPKSL-VNGVPWPQE----ATRRNS-------HTFNC 197
Query: 230 RLLISSTHLTAGLSRAGGENG--------------------QDDSGDVSSEGGPCLMCVA 269
R+LI G EN Q+D D S CL+C+A
Sbjct: 198 RMLIHPPE------DPGTENQEACQRYEVMQCFTVSQPKSIQEDGEDFQS----CLICIA 247
Query: 270 RRIPPTDKQLSAPIEQFTMKLDRSGTIIGMDTSGV 304
RR+ P ++ +E F K D +G II +DTS +
Sbjct: 248 RRL-PRPPAITG-VESFMTKQDTTGKIISIDTSSL 280
>sp|Q9Y6Q9|NCOA3_HUMAN Nuclear receptor coactivator 3 OS=Homo sapiens GN=NCOA3 PE=1 SV=1
Length = 1424
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 161/303 (53%), Gaps = 48/303 (15%)
Query: 27 ASFAESMSSLAVKPDKCAILQETVNQ---CLNEKRRREQENNYIEELAELISAASFAESM 83
+ E++ LA K + +T Q C EKRRREQE+ YIEELAELISA +
Sbjct: 2 SGLGENLDPLASDSRKRKLPCDTPGQGLTCSGEKRRREQESKYIEELAELISAN--LSDI 59
Query: 84 SSLAVKPDKCAILQETVNQIRNIKQQE---TSSDAVQQGEVSSSKPTVITNEVLGPLLLE 140
+ VKPDKCAIL+ETV QIR IK+Q ++ D VQ+ +VSS+ VI + LGPLLL+
Sbjct: 60 DNFNVKPDKCAILKETVRQIRQIKEQGKTISNDDDVQKADVSSTGQGVIDKDSLGPLLLQ 119
Query: 141 ALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSSHQ 200
AL+GFLFVVN DG + F +EN+ +++Y +++++ SVYN++H D F L S+
Sbjct: 120 ALDGFLFVVNRDGNIVFVSENVTQYLQYKQEDLVNTSVYNILHEEDRKDFLKNLPKSTVN 179
Query: 201 VNAWTSDSGGQAGKRPSLTASTPNRTFNIRLLISSTH---------------------LT 239
+WT+++ Q + TFN R+L+ + H
Sbjct: 180 GVSWTNETQRQK-----------SHTFNCRMLMKTPHDILEDINASPEMRQRYETMQCFA 228
Query: 240 AGLSRAGGENGQDDSGDVSSEGGPCLMCVARRIPPTDKQLSAPIEQFTMKLDRSGTIIGM 299
RA E G+D C++CVARRI ++ + E F + D SG ++ +
Sbjct: 229 LSQPRAMMEEGEDLQS--------CMICVARRITTGERTFPSNPESFITRHDLSGKVVNI 280
Query: 300 DTS 302
DT+
Sbjct: 281 DTN 283
>sp|O57539|NCOA3_XENLA Nuclear receptor coactivator 3 OS=Xenopus laevis GN=ncoa3 PE=1 SV=1
Length = 1391
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 150/275 (54%), Gaps = 44/275 (16%)
Query: 53 CLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETS 112
C EKRRREQE+ YIEELA+LISA + + VKPDKCAIL+ETV QIR IK+Q +
Sbjct: 33 CSGEKRRREQESKYIEELADLISAN--LSDIDNFNVKPDKCAILKETVRQIRQIKEQGKA 90
Query: 113 S---DAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYS 169
S D VQ+ +VSS+ VI + LGPLLL+AL+GFL+VVN +G + F +EN+ +++Y
Sbjct: 91 SSNDDDVQKADVSSTGQGVIDKDSLGPLLLQALDGFLYVVNREGSIVFVSENVTQYLQYK 150
Query: 170 RQEVLGKSVYNLIHHGDHARFHNCLVPSSHQVNAWTSDSGGQAGKRPSLTASTPNRTFNI 229
+++++ SVY+++H D F L S+ W S++ Q + TFN
Sbjct: 151 QEDLVNTSVYSILHEEDRKDFLKNLPKSTVNGVPWFSETPRQK-----------SHTFNC 199
Query: 230 RLLISSTH--------------------LTAGLSRAGGENGQDDSGDVSSEGGPCLMCVA 269
R+L+ ++H RA E G+D C++CVA
Sbjct: 200 RMLVKTSHDHLEDGSNLDARQRYETMQCFALSQPRAMIEEGEDLQS--------CMICVA 251
Query: 270 RRIPPTDKQLSAPIEQFTMKLDRSGTIIGMDTSGV 304
RRI ++ SA E F + D +G ++ +D + +
Sbjct: 252 RRITTAERAFSANPESFITRHDLTGKVVNIDANSL 286
>sp|O09000|NCOA3_MOUSE Nuclear receptor coactivator 3 OS=Mus musculus GN=Ncoa3 PE=1 SV=2
Length = 1398
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 98/140 (70%), Gaps = 5/140 (3%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE---TS 112
EK RREQE+ YIEELAELISA + + VKPDKCAIL+ETV QIR IK+Q +S
Sbjct: 35 EKWRREQESKYIEELAELISAN--LSDIDNFNVKPDKCAILKETVRQIRQIKEQGKTISS 92
Query: 113 SDAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQE 172
D VQ+ +VSS+ VI + LGPLLL+AL+GFLFVVN DG + F +EN+ +++Y +++
Sbjct: 93 DDDVQKADVSSTGQGVIDKDSLGPLLLQALDGFLFVVNRDGNIVFVSENVTQYLQYKQED 152
Query: 173 VLGKSVYNLIHHGDHARFHN 192
++ SVY+++H F N
Sbjct: 153 LVNTSVYSILHEPRRKDFLN 172
>sp|O08785|CLOCK_MOUSE Circadian locomoter output cycles protein kaput OS=Mus musculus
GN=Clock PE=1 SV=1
Length = 855
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 13/146 (8%)
Query: 50 VNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109
V++ +EK+RR+Q N I+EL ++ A K DK +LQ++++ +R K+
Sbjct: 37 VSRNKSEKKRRDQFNVLIKELGSMLPGN---------ARKMDKSTVLQKSIDFLRKHKET 87
Query: 110 ETSSDAVQQGEVSSS-KPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRY 168
SDA E+ KPT ++NE L+LEAL+GF + DG + + +E++ S + +
Sbjct: 88 TAQSDA---SEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEH 144
Query: 169 SRQEVLGKSVYNLIHHGDHARFHNCL 194
+++ +S++N I G+H+ + L
Sbjct: 145 LPSDLVDQSIFNFIPEGEHSEVYKIL 170
>sp|Q91YB0|CLOCK_NANGA Circadian locomoter output cycles protein kaput OS=Nannospalax
galili GN=Clock PE=1 SV=1
Length = 865
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 81/146 (55%), Gaps = 13/146 (8%)
Query: 50 VNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109
V++ +EK+RR+Q N I+EL ++ A K DK +LQ++++ +R K+
Sbjct: 37 VSRNKSEKKRRDQFNVLIKELGSMLPGN---------ARKMDKSTVLQKSIDFLRKHKEI 87
Query: 110 ETSSDAVQQGEVSSS-KPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRY 168
SDA E+ KPT ++NE L+LEAL+GF + DG + + +E++ S + +
Sbjct: 88 TAQSDA---SEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEH 144
Query: 169 SRQEVLGKSVYNLIHHGDHARFHNCL 194
+++ +SV+N I G+H+ + L
Sbjct: 145 LPSDLVDQSVFNFIPEGEHSEVYKIL 170
>sp|Q91YB2|CLOCK_SPACA Circadian locomoter output cycles protein kaput OS=Spalax carmeli
GN=Clock PE=2 SV=1
Length = 865
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 81/146 (55%), Gaps = 13/146 (8%)
Query: 50 VNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109
V++ +EK+RR+Q N I+EL ++ A K DK +LQ++++ +R K+
Sbjct: 37 VSRNKSEKKRRDQFNVLIKELGSMLPGN---------ARKMDKSTVLQKSIDFLRKHKEI 87
Query: 110 ETSSDAVQQGEVSSS-KPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRY 168
SDA E+ KPT ++NE L+LEAL+GF + DG + + +E++ S + +
Sbjct: 88 TAQSDA---SEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEH 144
Query: 169 SRQEVLGKSVYNLIHHGDHARFHNCL 194
+++ +SV+N I G+H+ + L
Sbjct: 145 LPSDLVDQSVFNFIPEGEHSEVYKIL 170
>sp|O15945|ARNT_DROME Aryl hydrocarbon receptor nuclear translocator homolog
OS=Drosophila melanogaster GN=tgo PE=1 SV=3
Length = 642
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 15/146 (10%)
Query: 51 NQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ- 109
N C E+RRR + YI EL++++ + S+LA KPDK IL+ V ++ ++
Sbjct: 17 NHCEIERRRRNKMTAYITELSDMVP------TCSALARKPDKLTILRMAVAHMKALRGTG 70
Query: 110 ETSSDAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRY 168
TSSD + KP+ +T++ L L+LEA +GFLFVV+ D G V + ++++ + Y
Sbjct: 71 NTSSDG-------TYKPSFLTDQELKHLILEAADGFLFVVSCDSGRVIYVSDSVTPVLNY 123
Query: 169 SRQEVLGKSVYNLIHHGDHARFHNCL 194
++ + G S+Y IH D + L
Sbjct: 124 TQSDWYGTSLYEHIHPDDREKIREQL 149
>sp|Q5RAK8|CLOCK_PONAB Circadian locomoter output cycles protein kaput OS=Pongo abelii
GN=CLOCK PE=2 SV=1
Length = 846
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 13/146 (8%)
Query: 50 VNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109
V++ +EK+RR+Q N I+EL ++ A K DK +LQ++++ +R K+
Sbjct: 37 VSRNKSEKKRRDQFNVLIKELGSMLPGN---------ARKMDKSTVLQKSIDFLRKHKEI 87
Query: 110 ETSSDAVQQGEVSSS-KPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRY 168
SDA E+ KPT ++NE L+LEAL+GF + DG + + +E++ S + +
Sbjct: 88 TAQSDA---SEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEH 144
Query: 169 SRQEVLGKSVYNLIHHGDHARFHNCL 194
+++ +S++N I G+H+ + L
Sbjct: 145 LPSDLVDQSIFNFIPEGEHSEVYKIL 170
>sp|Q9WVS9|CLOCK_RAT Circadian locomoter output cycles protein kaput OS=Rattus
norvegicus GN=Clock PE=2 SV=1
Length = 862
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 13/146 (8%)
Query: 50 VNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109
V++ +EK+RR+Q N I+EL ++ A K DK +LQ++++ +R K+
Sbjct: 37 VSRNKSEKKRRDQFNVLIKELGSMLPGN---------ARKMDKSTVLQKSIDFLRKHKEI 87
Query: 110 ETSSDAVQQGEVSSS-KPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRY 168
SDA E+ KPT ++NE L+LEAL+GF + DG + + +E + S + +
Sbjct: 88 TAQSDA---SEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVSETVTSLLEH 144
Query: 169 SRQEVLGKSVYNLIHHGDHARFHNCL 194
+++ +S++N I G+H+ + L
Sbjct: 145 LPSDLVDQSIFNFIPEGEHSEVYKIL 170
>sp|O15516|CLOCK_HUMAN Circadian locomoter output cycles protein kaput OS=Homo sapiens
GN=CLOCK PE=1 SV=1
Length = 846
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 13/146 (8%)
Query: 50 VNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109
V++ +EK+RR+Q N I+EL ++ A K DK +LQ++++ +R K+
Sbjct: 37 VSRNKSEKKRRDQFNVLIKELGSMLPGN---------ARKMDKSTVLQKSIDFLRKHKEI 87
Query: 110 ETSSDAVQQGEVSSS-KPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRY 168
SDA E+ KPT ++NE L+LEAL+GF + DG + + +E++ S + +
Sbjct: 88 TAQSDA---SEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEH 144
Query: 169 SRQEVLGKSVYNLIHHGDHARFHNCL 194
+++ +S++N I G+H+ + L
Sbjct: 145 LPSDLVDQSIFNFIPEGEHSEVYKIL 170
>sp|Q6YGZ4|CLOCK_TYTAL Circadian locomoter output cycles protein kaput OS=Tyto alba
GN=CLOCK PE=2 SV=1
Length = 851
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 15/151 (9%)
Query: 50 VNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109
V++ +EK+RR+Q N I+EL ++ A K DK +LQ++++ +R K+
Sbjct: 37 VSRNKSEKKRRDQFNVLIKELGSMLPGN---------ARKMDKSTVLQKSIDFLRKHKEI 87
Query: 110 ETSSDAVQQGEVSSS-KPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRY 168
SDA E+ KPT ++NE L+LEAL+GF + DG + + +E+I + +
Sbjct: 88 TAQSDA---SEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGNIIYVSESITPLLEH 144
Query: 169 SRQEVLGKSVYNLIHHGDHARFHNCLVPSSH 199
+++ +SV+N I G+H+ + L SSH
Sbjct: 145 LPSDLVDQSVFNFIPEGEHSEIYKIL--SSH 173
>sp|Q8QGQ6|CLOCK_CHICK Circadian locomoter output cycles protein kaput OS=Gallus gallus
GN=CLOCK PE=1 SV=2
Length = 875
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 83/151 (54%), Gaps = 15/151 (9%)
Query: 50 VNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109
V++ +EK+RR+Q N I+EL ++ A K DK +LQ++++ +R K+
Sbjct: 37 VSRNKSEKKRRDQFNVLIKELGSMLPGN---------ARKMDKSTVLQKSIDFLRKHKEI 87
Query: 110 ETSSDAVQQGEVSSS-KPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRY 168
SDA E+ KPT ++NE L+LEAL+GF + DG + + +E++ + +
Sbjct: 88 TAQSDA---SEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGNIIYVSESVTPLLEH 144
Query: 169 SRQEVLGKSVYNLIHHGDHARFHNCLVPSSH 199
+++ +SV+N I G+H+ + L SSH
Sbjct: 145 LPSDLVDQSVFNFIPEGEHSEIYKIL--SSH 173
>sp|Q91YA8|CLOCK_SPAJD Circadian locomoter output cycles protein kaput OS=Spalax judaei
GN=Clock PE=2 SV=1
Length = 865
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 13/146 (8%)
Query: 50 VNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109
V++ +EK+RR+Q N I+EL ++ A + DK +LQ++++ +R K+
Sbjct: 37 VSRNKSEKKRRDQFNVLIKELGSMLPGN---------AREMDKSTVLQKSIDFLRKHKEI 87
Query: 110 ETSSDAVQQGEVSSS-KPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRY 168
SDA E+ KPT ++NE L+LEAL+GF + DG + + +E++ S + +
Sbjct: 88 TAQSDA---SEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEH 144
Query: 169 SRQEVLGKSVYNLIHHGDHARFHNCL 194
+++ +SV+N I G+H+ + L
Sbjct: 145 LPSDLVDQSVFNFIPEGEHSEVYKIL 170
>sp|Q91YA9|BMAL1_NANGA Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Nannospalax galili GN=Arntl PE=1 SV=1
Length = 626
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 81/135 (60%), Gaps = 13/135 (9%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
EKRRR++ N++I+ELA L+ + ++++ K DK +L+ V ++ ++ A
Sbjct: 81 EKRRRDKMNSFIDELASLVP------TCNAMSRKLDKLTVLRMAVQHMKTLRG------A 128
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
++ KPT ++++ L L+L A +GFLFVV D G + F +E++ + YS+ +++
Sbjct: 129 TNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLI 188
Query: 175 GKSVYNLIHHGDHAR 189
G+S+++ +H D A+
Sbjct: 189 GQSLFDYLHPKDIAK 203
>sp|Q9WTL8|BMAL1_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mus musculus GN=Arntl PE=1 SV=2
Length = 632
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 99/194 (51%), Gaps = 28/194 (14%)
Query: 5 NEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLN--------E 56
N KR+ + +++ A F ESM + P E + N E
Sbjct: 36 NRKRKGSATDYQLDDFA-------FEESMDTDKDDPHGRLEYAEHQGRIKNAREAHSQIE 88
Query: 57 KRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDAV 116
KRRR++ N++I+ELA L+ + ++++ K DK +L+ V ++ ++ A
Sbjct: 89 KRRRDKMNSFIDELASLVP------TCNAMSRKLDKLTVLRMAVQHMKTLRG------AT 136
Query: 117 QQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVLG 175
++ KPT ++++ L L+L A +GFLFVV D G + F +E++ + YS+ +++G
Sbjct: 137 NPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIG 196
Query: 176 KSVYNLIHHGDHAR 189
+S+++ +H D A+
Sbjct: 197 QSLFDYLHPKDIAK 210
>sp|O88529|BMAL1_MESAU Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mesocricetus auratus GN=ARNTL PE=2 SV=1
Length = 626
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 81/135 (60%), Gaps = 13/135 (9%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
EKRRR++ N++I+ELA L+ + ++++ K DK +L+ V ++ ++ A
Sbjct: 81 EKRRRDKMNSFIDELASLVP------TCNAMSRKLDKLTVLRMAVQHMKTLRG------A 128
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
++ KPT ++++ L L+L A +GFLFVV D G + F +E++ + YS+ +++
Sbjct: 129 TNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLI 188
Query: 175 GKSVYNLIHHGDHAR 189
G+S+++ +H D A+
Sbjct: 189 GQSLFDYLHPKDIAK 203
>sp|O00327|BMAL1_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Homo sapiens GN=ARNTL PE=1 SV=2
Length = 626
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 80/135 (59%), Gaps = 13/135 (9%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
EKRRR++ N++I+ELA L+ + +++ K DK +L+ V ++ ++ A
Sbjct: 81 EKRRRDKMNSFIDELASLVPTCN------AMSRKLDKLTVLRMAVQHMKTLRG------A 128
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
++ KPT ++++ L L+L A +GFLFVV D G + F +E++ + YS+ +++
Sbjct: 129 TNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLI 188
Query: 175 GKSVYNLIHHGDHAR 189
G+S+++ +H D A+
Sbjct: 189 GQSLFDYLHPKDIAK 203
>sp|A0MLS5|BMAL1_HORSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Equus caballus GN=ARNTL PE=2 SV=1
Length = 626
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 80/135 (59%), Gaps = 13/135 (9%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
EKRRR++ N++I+ELA L+ + +++ K DK +L+ V ++ ++ A
Sbjct: 81 EKRRRDKMNSFIDELASLVPTCN------AMSRKLDKLTVLRMAVQHMKTLRG------A 128
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
++ KPT ++++ L L+L A +GFLFVV D G + F +E++ + YS+ +++
Sbjct: 129 TNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLI 188
Query: 175 GKSVYNLIHHGDHAR 189
G+S+++ +H D A+
Sbjct: 189 GQSLFDYLHPKDIAK 203
>sp|Q9EPW1|BMAL1_RAT Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Rattus norvegicus GN=Arntl PE=2 SV=4
Length = 626
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 81/135 (60%), Gaps = 13/135 (9%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
EKRRR++ N++I+ELA L+ + ++++ K DK +L+ V ++ ++ A
Sbjct: 81 EKRRRDKMNSFIDELASLVP------TCNAMSRKLDKLTVLRMAVQHMKTLRG------A 128
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
++ KPT ++++ L L+L A +GFLFVV D G + F +E++ + YS+ +++
Sbjct: 129 TNPYTEANYKPTSLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLI 188
Query: 175 GKSVYNLIHHGDHAR 189
G+S+++ +H D A+
Sbjct: 189 GQSLFDYLHPKDIAK 203
>sp|O02219|AHA1_CAEEL Aryl hydrocarbon receptor nuclear translocator homolog
OS=Caenorhabditis elegans GN=aha-1 PE=1 SV=1
Length = 453
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 25 SAASFAESMSSLAVKPDKCAILQETV----------NQCLNEKRRREQENNYIEELAELI 74
SA SFA + + K A +++ + N E+RRR + +YI ELAE++
Sbjct: 12 SATSFAMEDEDMGMPSGKYARMEDEMGENKERFARENHSEIERRRRNKMTHYINELAEMV 71
Query: 75 SAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDAVQQGEVSSSKPTVITNEVL 134
+ SL KPDK IL+ V+ ++ I+ T+ D +S KP+ +T++ L
Sbjct: 72 PQCA------SLGRKPDKLTILRMAVSHMKGIRGH-TAQDE------TSYKPSFLTDQEL 118
Query: 135 GPLLLEALEGFLFVV-NPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNC 193
L+LEA GFLFVV G V + ++I + +++ L +++ LIH D + +
Sbjct: 119 KHLILEAANGFLFVVCCQTGKVLYVADSITPVLNLKQEDWLQRNLNELIHPDDQDKIRDQ 178
Query: 194 LVPSSHQVN 202
L S VN
Sbjct: 179 LCGSEVSVN 187
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 6 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQ-EN 64
E+RRR + +YI ELAE++ +SL KPDK IL+ V+ + Q E
Sbjct: 53 ERRRRNKMTHYINELAEMVPQC------ASLGRKPDKLTILRMAVSHMKGIRGHTAQDET 106
Query: 65 NYI------EELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE 110
+Y +EL LI A+ + + + K + +++ + N+KQ++
Sbjct: 107 SYKPSFLTDQELKHLILEAANG-FLFVVCCQTGKVLYVADSITPVLNLKQED 157
>sp|Q9I8T7|BMAL1_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Gallus gallus GN=ARNTL PE=1 SV=1
Length = 633
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 80/135 (59%), Gaps = 13/135 (9%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
EKRRR++ N++I+ELA L+ + ++++ K DK +L+ V ++ ++ A
Sbjct: 88 EKRRRDKMNSFIDELASLVP------TCNAMSRKLDKLTVLRMAVQHMKTLRG------A 135
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
++ KP ++++ L L+L A +GFLFVV D G + F +E++ + YS+ +++
Sbjct: 136 TNPYTEANYKPAFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLI 195
Query: 175 GKSVYNLIHHGDHAR 189
G+S+++ +H D A+
Sbjct: 196 GQSLFDYLHPKDIAK 210
>sp|Q5R4T2|BMAL1_PONAB Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Pongo abelii GN=ARNTL PE=2 SV=1
Length = 625
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 79/135 (58%), Gaps = 13/135 (9%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
EKRRR++ N++I+ELA L+ + +++ K DK +L+ V ++ ++ A
Sbjct: 81 EKRRRDKMNSFIDELASLVPTCN------AMSRKLDKLTVLRMAVQHMKTLRG------A 128
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
++ KPT ++++ L L+L A +GFLFVV D G + F +E+ + YS+ +++
Sbjct: 129 TNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESAFKILNYSQNDLI 188
Query: 175 GKSVYNLIHHGDHAR 189
G+S+++ +H D A+
Sbjct: 189 GQSLFDYLHPKDIAK 203
>sp|Q6YGZ5|BMAL1_TYTAL Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Tyto alba GN=ARNTL PE=2 SV=1
Length = 633
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 80/135 (59%), Gaps = 13/135 (9%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
EKRRR++ N++I+ELA L+ + ++++ K DK +L+ V ++ ++ A
Sbjct: 88 EKRRRDKMNSFIDELASLVP------TCNAMSRKLDKLTVLRMAVQHMKTLRG------A 135
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
++ KP ++++ L L+L A +GFLFVV D G + F +E++ + YS+ +++
Sbjct: 136 TNPYTEANYKPAFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLI 195
Query: 175 GKSVYNLIHHGDHAR 189
G+S+++ +H D A+
Sbjct: 196 GQSLFDYLHPKDIAK 210
>sp|P79832|ARNT_ONCMY Aryl hydrocarbon receptor nuclear translocator OS=Oncorhynchus
mykiss GN=arnt PE=1 SV=1
Length = 723
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 81/141 (57%), Gaps = 15/141 (10%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ-ETSSD 114
E+RRR + YI EL++++ + S+LA KPDK IL+ V+ +++++ T++D
Sbjct: 74 ERRRRNKMTAYITELSDMVP------TCSALARKPDKLTILRMAVSHMKSLRGSGNTAAD 127
Query: 115 AVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVN-PDGYVNFCTENIKSFIRYSRQEV 173
+ KP+ +T++ L L+LEA +GFLFVV+ G V + ++++ + S+ +
Sbjct: 128 G-------TYKPSFLTDQELKHLILEAADGFLFVVSCESGRVVYVSDSLTPVLNQSQSDW 180
Query: 174 LGKSVYNLIHHGDHARFHNCL 194
LG S+Y+ +H D + L
Sbjct: 181 LGSSLYDQLHPDDGDKLREQL 201
>sp|P27540|ARNT_HUMAN Aryl hydrocarbon receptor nuclear translocator OS=Homo sapiens
GN=ARNT PE=1 SV=1
Length = 789
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 15/133 (11%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ-ETSSD 114
E+RRR + YI EL++++ + S+LA KPDK IL+ V+ +++++ TS+D
Sbjct: 98 ERRRRNKMTAYITELSDMVP------TCSALARKPDKLTILRMAVSHMKSLRGTGNTSTD 151
Query: 115 AVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEV 173
S KP+ +T++ L L+LEA +GFLF+V+ + G V + ++++ + + E
Sbjct: 152 G-------SYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204
Query: 174 LGKSVYNLIHHGD 186
G ++Y+ +H D
Sbjct: 205 FGSTLYDQVHPDD 217
>sp|P41739|ARNT_RAT Aryl hydrocarbon receptor nuclear translocator OS=Rattus norvegicus
GN=Arnt PE=1 SV=2
Length = 800
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 77/133 (57%), Gaps = 15/133 (11%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ-ETSSD 114
E+RRR + YI EL++++ S +LA KPDK IL+ V+ +++++ TS+D
Sbjct: 98 ERRRRNKMTAYITELSDMVPTCS------ALARKPDKLTILRMAVSHMKSLRGTGNTSTD 151
Query: 115 AVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEV 173
S KP+ +T++ L L+LEA +GFLF+V+ + G V + ++++ + + E
Sbjct: 152 G-------SYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204
Query: 174 LGKSVYNLIHHGD 186
G ++Y+ +H D
Sbjct: 205 FGSTLYDQVHPDD 217
>sp|P53762|ARNT_MOUSE Aryl hydrocarbon receptor nuclear translocator OS=Mus musculus
GN=Arnt PE=1 SV=3
Length = 791
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 15/133 (11%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ-ETSSD 114
E+RRR + YI EL++++ + S+LA KPDK IL+ V+ +++++ TS+D
Sbjct: 98 ERRRRNKMTAYITELSDMVP------TCSALARKPDKLTILRMAVSHMKSLRGTGNTSTD 151
Query: 115 AVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEV 173
S KP+ +T++ L L+LEA +GFLF+V+ + G V + ++++ + + E
Sbjct: 152 G-------SYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204
Query: 174 LGKSVYNLIHHGD 186
G ++Y+ +H D
Sbjct: 205 FGSTLYDQVHPDD 217
>sp|O02748|ARNT_RABIT Aryl hydrocarbon receptor nuclear translocator OS=Oryctolagus
cuniculus GN=ARNT PE=2 SV=1
Length = 790
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 15/133 (11%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ-ETSSD 114
E+RRR + YI EL++++ + S+LA KPDK IL+ V+ +++++ TS+D
Sbjct: 98 ERRRRNKMTAYITELSDIVP------TCSALARKPDKLTILRMAVSHMKSLRGTGNTSTD 151
Query: 115 AVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEV 173
S KP+ +T++ L L+LEA +GFLF+V+ + G V + ++++ + + E
Sbjct: 152 G-------SYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204
Query: 174 LGKSVYNLIHHGD 186
G ++Y+ +H D
Sbjct: 205 FGSTLYDQVHPDD 217
>sp|Q9BE97|ARNT_BOVIN Aryl hydrocarbon receptor nuclear translocator OS=Bos taurus
GN=ARNT PE=2 SV=1
Length = 790
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 78/133 (58%), Gaps = 15/133 (11%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ-ETSSD 114
E+RRR + YI EL++++ + S+LA KPDK IL+ V+ +++++ TS+D
Sbjct: 98 ERRRRNKMTAYITELSDMVP------TCSALARKPDKLTILRMAVSHMKSLRGTGNTSTD 151
Query: 115 AVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEV 173
+ KP+ +T++ L L+LEA +GFLF+V+ + G V + ++++ + + E
Sbjct: 152 G-------TYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204
Query: 174 LGKSVYNLIHHGD 186
G ++Y+ +H D
Sbjct: 205 FGSTLYDQVHPDD 217
>sp|Q8QGQ7|BMAL2_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Gallus gallus GN=ARNTL2 PE=1 SV=1
Length = 622
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 23/190 (12%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
EKRRR++ NN IEEL+ +I + +A K DK +L+ V ++++K +S
Sbjct: 101 EKRRRDKMNNLIEELSAMIPQC------NPMARKLDKLTVLRMAVQHLKSLKGSTSSYTE 154
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
V+ KP+ + ++ L L+L A +GFLFVV + G + F +E++ + Y + ++
Sbjct: 155 VRY------KPSFLKDDELRQLILRAADGFLFVVGCNRGKILFVSESVCKILNYDQTSLI 208
Query: 175 GKSVYNLIHHGDHARFHNCLVPSSHQVNAWTSDSGGQAGKR--------PSLTASTPNRT 226
G+S+++ +H D A+ L SS V+ G+ G + P+ S R+
Sbjct: 209 GQSLFDYLHPKDVAKVKEQL--SSSDVSPREKLVDGKTGLQVHTDFQAGPARLNSGARRS 266
Query: 227 FNIRLLISST 236
F R+ S T
Sbjct: 267 FFCRIKCSRT 276
>sp|Q9DG12|ARNT2_DANRE Aryl hydrocarbon receptor nuclear translocator 2 OS=Danio rerio
GN=arnt2 PE=1 SV=2
Length = 737
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 75/133 (56%), Gaps = 15/133 (11%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ-ETSSD 114
E+RRR + YI EL++++ S +LA KPDK IL+ V+ +++++ TS+D
Sbjct: 87 ERRRRNKMTQYITELSDMVPTCS------ALARKPDKLTILRMAVSHMKSMRGTGNTSTD 140
Query: 115 AVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEV 173
+ KP+ +T + L L+LEA +GFLFVV + G V + ++++ + + + E
Sbjct: 141 G-------AYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNHPQSEW 193
Query: 174 LGKSVYNLIHHGD 186
G +++ +H D
Sbjct: 194 FGSTLFEQVHPDD 206
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 6 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQ 52
E+RRR + YI EL++++ S+LA KPDK IL+ V+
Sbjct: 87 ERRRRNKMTQYITELSDMVPTC------SALARKPDKLTILRMAVSH 127
>sp|O61735|CLOCK_DROME Circadian locomoter output cycles protein kaput OS=Drosophila
melanogaster GN=Clk PE=2 SV=3
Length = 1027
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 78/143 (54%), Gaps = 13/143 (9%)
Query: 54 LNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSS 113
L+EK+RR+Q N+ + +L+ LIS +S K DK +L+ T+ ++N ++
Sbjct: 22 LSEKKRRDQFNSLVNDLSALISTSS---------RKMDKSTVLKSTIAFLKN---HNEAT 69
Query: 114 DAVQQGEVSSS-KPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQE 172
D + E+ KP ++N+ L+LE+L+GF+ V + G + + +E+I S + Y Q+
Sbjct: 70 DRSKVFEIQQDWKPAFLSNDEYTHLMLESLDGFMMVFSSMGSIFYASESITSQLGYLPQD 129
Query: 173 VLGKSVYNLIHHGDHARFHNCLV 195
+ ++Y+L + DH N +
Sbjct: 130 LYNMTIYDLAYEMDHEALLNIFM 152
>sp|Q9HBZ2|ARNT2_HUMAN Aryl hydrocarbon receptor nuclear translocator 2 OS=Homo sapiens
GN=ARNT2 PE=1 SV=2
Length = 717
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 13/132 (9%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
E+RRR + YI EL++++ + S+LA KPDK IL+ V+ +++++ S
Sbjct: 72 ERRRRNKMTQYITELSDMVP------TCSALARKPDKLTILRMAVSHMKSMRGTGNKSTD 125
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
+ KP+ +T + L L+LEA +GFLFVV + G V + ++++ + + E
Sbjct: 126 ------GAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNQPQSEWF 179
Query: 175 GKSVYNLIHHGD 186
G ++Y +H D
Sbjct: 180 GSTLYEQVHPDD 191
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 6 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQ 52
E+RRR + YI EL++++ + S+LA KPDK IL+ V+
Sbjct: 72 ERRRRNKMTQYITELSDMVP------TCSALARKPDKLTILRMAVSH 112
>sp|Q61324|ARNT2_MOUSE Aryl hydrocarbon receptor nuclear translocator 2 OS=Mus musculus
GN=Arnt2 PE=1 SV=2
Length = 712
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 13/132 (9%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
E+RRR + YI EL++++ + S+LA KPDK IL+ V+ +++++ S
Sbjct: 72 ERRRRNKMTQYITELSDMVP------TCSALARKPDKLTILRMAVSHMKSMRGTGNKSTD 125
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
+ KP+ +T + L L+LEA +GFLFVV + G V + ++++ + + E
Sbjct: 126 ------GAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNQPQSEWF 179
Query: 175 GKSVYNLIHHGD 186
G ++Y +H D
Sbjct: 180 GSTLYEQVHPDD 191
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 6 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQ 52
E+RRR + YI EL++++ + S+LA KPDK IL+ V+
Sbjct: 72 ERRRRNKMTQYITELSDMVP------TCSALARKPDKLTILRMAVSH 112
>sp|Q78E60|ARNT2_RAT Aryl hydrocarbon receptor nuclear translocator 2 OS=Rattus
norvegicus GN=Arnt2 PE=2 SV=1
Length = 712
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 13/132 (9%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
E+RRR + YI EL++++ + S+LA KPDK IL+ V+ +++++ S
Sbjct: 72 ERRRRNKMTQYITELSDMVP------TCSALARKPDKLTILRMAVSHMKSMRGTGNKSTD 125
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
+ KP+ +T + L L+LEA +GFLFVV + G V + ++++ + + E
Sbjct: 126 ------GAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNQPQSEWF 179
Query: 175 GKSVYNLIHHGD 186
G ++Y +H D
Sbjct: 180 GSTLYEQVHPDD 191
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 6 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQ 52
E+RRR + YI EL++++ + S+LA KPDK IL+ V+
Sbjct: 72 ERRRRNKMTQYITELSDMVP------TCSALARKPDKLTILRMAVSH 112
>sp|O61734|CYCL_DROME Protein cycle OS=Drosophila melanogaster GN=cyc PE=2 SV=2
Length = 413
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 77/132 (58%), Gaps = 11/132 (8%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
EKRRR++ N YI EL+ +I FA + K DK +L+ V +R I+ S +
Sbjct: 39 EKRRRDKMNTYINELSSMIPMC-FA-----MQRKLDKLTVLRMAVQHLRGIR----GSGS 88
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
+ S +P+ ++++ L ++L+A EGFLFVV D G + + ++++ S + ++ ++L
Sbjct: 89 LHPFNGSDYRPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQADLL 148
Query: 175 GKSVYNLIHHGD 186
G+S ++++H D
Sbjct: 149 GQSWFDVLHPKD 160
>sp|Q8WYA1|BMAL2_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Homo sapiens GN=ARNTL2 PE=1 SV=2
Length = 636
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 13/135 (9%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
EKRRR++ NN IEEL+ +I + +A K DK +L+ V +R++K S
Sbjct: 116 EKRRRDKMNNLIEELSAMIPQC------NPMARKLDKLTVLRMAVQHLRSLKGLTNSYVG 169
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
S+ +P+ + + L L+L+ EGFLFVV + G + F ++++ + Y + +
Sbjct: 170 ------SNYRPSFLQDNELRHLILKTAEGFLFVVGCERGKILFVSKSVSKILNYDQASLT 223
Query: 175 GKSVYNLIHHGDHAR 189
G+S+++ +H D A+
Sbjct: 224 GQSLFDFLHPKDVAK 238
>sp|Q98SJ5|SIM1A_DANRE Single-minded homolog 1-A OS=Danio rerio GN=sim1a PE=2 SV=1
Length = 745
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 57 KRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIR-NIKQQETSSDA 115
+ RRE+EN+ ELA+L+ S S S DK +I++ T + ++ I E ++
Sbjct: 10 RTRREKENSEFYELAKLLPLPSAITSQS------DKASIIRLTTSYLKMRIVFPEGLGES 63
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLG 175
G VS + LG LL+ L+GF+FVV PDG + + +E + S++E+ G
Sbjct: 64 --WGHVSRTTSLENVGRELGSHLLQTLDGFIFVVAPDGKILYISETASVHLGLSQEELTG 121
Query: 176 KSVYNLIHHGDH 187
S+Y IH DH
Sbjct: 122 NSIYEYIHPADH 133
>sp|Q2VPD4|BMAL2_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Mus musculus GN=Arntl2 PE=2 SV=2
Length = 579
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 79/135 (58%), Gaps = 13/135 (9%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDA 115
EKRRR++ N+ I++L+ +I A K DK ++L+ V +R+++
Sbjct: 57 EKRRRDKMNHLIQKLSSMIPP------HIPTAHKLDKLSVLRRAVQYLRSLRGMT----E 106
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVL 174
+ GE +SKP+ I ++ L L+L+A EGFLFVV + G + + ++++ +RY + ++
Sbjct: 107 LYLGE--NSKPSFIQDKELSHLILKAAEGFLFVVGCERGRIFYVSKSVSKTLRYDQASLI 164
Query: 175 GKSVYNLIHHGDHAR 189
G+++++ +H D A+
Sbjct: 165 GQNLFDFLHPKDVAK 179
>sp|Q61045|SIM1_MOUSE Single-minded homolog 1 OS=Mus musculus GN=Sim1 PE=1 SV=3
Length = 765
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 57 KRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIR-NIKQQETSSDA 115
+ RRE+EN+ ELA+L+ S ++ + DK +I++ T + ++ + E +A
Sbjct: 10 RTRREKENSEFYELAKLLPLPS------AITSQLDKASIIRLTTSYLKMRVVFPEGLGEA 63
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLG 175
G S + P LG LL+ L+GF+FVV PDG + + +E + S+ E+ G
Sbjct: 64 --WGHTSRTSPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTG 121
Query: 176 KSVYNLIHHGDH 187
S+Y IH DH
Sbjct: 122 NSIYEYIHPADH 133
>sp|A2T6X9|SIM1_PANTR Single-minded homolog 1 OS=Pan troglodytes GN=SIM1 PE=3 SV=1
Length = 766
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 57 KRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIR-NIKQQETSSDA 115
+ RRE+EN+ ELA+L+ S ++ + DK +I++ T + ++ + E +A
Sbjct: 10 RTRREKENSEFYELAKLLPLPS------AITSQLDKASIIRLTTSYLKMRVVFPEGLGEA 63
Query: 116 VQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLG 175
G S + P LG LL+ L+GF+FVV PDG + + +E + S+ E+ G
Sbjct: 64 --WGHSSRTSPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTG 121
Query: 176 KSVYNLIHHGDH 187
S+Y IH DH
Sbjct: 122 NSIYEYIHPADH 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,105,114
Number of Sequences: 539616
Number of extensions: 5268867
Number of successful extensions: 15513
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 15196
Number of HSP's gapped (non-prelim): 272
length of query: 383
length of database: 191,569,459
effective HSP length: 119
effective length of query: 264
effective length of database: 127,355,155
effective search space: 33621760920
effective search space used: 33621760920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)