Query psy7682
Match_columns 383
No_of_seqs 301 out of 1080
Neff 6.9
Searched_HMMs 29240
Date Sat Aug 17 00:43:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3l_B BMAL1B; BHLH, PAS, circ 100.0 8.6E-50 2.9E-54 400.2 19.4 312 42-382 7-359 (387)
2 4f3l_A Mclock, circadian locom 100.0 9.6E-47 3.3E-51 374.4 19.8 298 46-382 10-331 (361)
3 4dj2_A Period circadian protei 100.0 1.4E-37 4.7E-42 304.4 11.8 228 123-381 12-257 (320)
4 4dj3_A Period circadian protei 100.0 1.2E-36 4E-41 297.4 16.9 191 124-330 13-217 (317)
5 3gdi_A Period circadian protei 100.0 4.4E-36 1.5E-40 292.5 15.8 218 134-381 16-246 (309)
6 3rty_A Period circadian protei 100.0 1.7E-30 5.8E-35 256.0 11.6 173 142-330 2-197 (339)
7 1oj5_A Steroid receptor coacti 99.6 5.2E-17 1.8E-21 137.7 0.1 81 282-381 5-89 (132)
8 2vlg_A Sporulation kinase A; h 99.6 1.5E-15 5E-20 125.4 5.0 60 136-195 2-61 (111)
9 4h10_A ARYL hydrocarbon recept 99.3 1E-12 3.5E-17 100.6 5.2 61 44-110 5-65 (73)
10 4f3l_B BMAL1B; BHLH, PAS, circ 99.3 9.3E-13 3.2E-17 131.4 3.6 105 142-274 277-383 (387)
11 4f3l_A Mclock, circadian locom 99.2 1.4E-11 4.8E-16 121.6 8.8 53 143-195 251-303 (361)
12 4h10_B Circadian locomoter out 99.2 1.2E-11 4E-16 94.0 6.1 54 47-109 7-60 (71)
13 3f1p_B ARYL hydrocarbon recept 99.2 4.2E-11 1.5E-15 96.8 8.9 112 134-274 3-117 (121)
14 3ewk_A Sensor protein; PAS dom 99.1 2.3E-10 7.7E-15 104.0 9.8 149 145-326 1-161 (227)
15 1a0a_A BHLH, protein (phosphat 99.0 2.2E-10 7.7E-15 85.2 4.9 59 48-109 2-60 (63)
16 1an4_A Protein (upstream stimu 98.9 9.2E-10 3.2E-14 82.4 3.6 58 48-109 5-62 (65)
17 3f1p_A Endothelial PAS domain- 98.9 5E-10 1.7E-14 89.6 2.3 54 142-195 8-61 (117)
18 1am9_A Srebp-1A, protein (ster 98.8 3.3E-09 1.1E-13 83.1 5.8 54 47-109 5-58 (82)
19 4ati_A MITF, microphthalmia-as 98.7 1.3E-08 4.5E-13 85.0 5.6 58 46-109 25-82 (118)
20 1hlo_A Protein (transcription 98.7 2.8E-08 9.4E-13 77.4 6.1 56 46-109 10-65 (80)
21 1nkp_B MAX protein, MYC proto- 98.6 3.4E-08 1.2E-12 77.4 6.0 54 48-109 2-55 (83)
22 3gdi_A Period circadian protei 98.6 2.3E-08 7.8E-13 96.9 5.8 73 144-236 166-239 (309)
23 4dj3_A Period circadian protei 98.6 2.1E-08 7.3E-13 97.5 5.3 53 143-195 174-226 (317)
24 4dj2_A Period circadian protei 98.6 2.7E-08 9.4E-13 96.8 6.0 54 142-195 175-228 (320)
25 2kdk_A ARYL hydrocarbon recept 98.6 1.8E-08 6.3E-13 80.5 2.5 57 139-195 9-65 (121)
26 3rty_A Period circadian protei 98.6 2.1E-08 7.1E-13 98.4 3.3 54 142-195 153-206 (339)
27 3f1p_B ARYL hydrocarbon recept 98.6 1.1E-07 3.9E-12 76.2 7.0 46 282-330 10-55 (121)
28 3f1p_A Endothelial PAS domain- 98.5 7.4E-08 2.5E-12 76.7 5.0 82 283-382 8-89 (117)
29 1nkp_A C-MYC, MYC proto-oncoge 98.5 1.3E-07 4.3E-12 75.0 6.2 56 47-109 5-60 (88)
30 2vlg_A Sporulation kinase A; h 98.5 9.3E-08 3.2E-12 78.2 4.5 45 283-330 8-52 (111)
31 3icy_A Sensor protein; sensory 98.3 6.2E-07 2.1E-11 70.3 5.9 62 135-196 6-69 (118)
32 2kdk_A ARYL hydrocarbon recept 98.3 1.4E-06 4.9E-11 69.2 7.3 49 279-330 8-56 (121)
33 2gj3_A Nitrogen fixation regul 98.3 1.7E-06 5.7E-11 69.4 7.7 57 135-191 7-63 (120)
34 1nlw_A MAD protein, MAX dimeri 98.3 9.7E-07 3.3E-11 68.6 5.9 54 49-109 2-55 (80)
35 3u5v_A Protein MAX, transcript 98.3 6.4E-07 2.2E-11 68.9 4.4 56 48-109 5-60 (76)
36 1mdy_A Protein (MYOD BHLH doma 98.3 1.6E-06 5.5E-11 65.2 6.2 56 46-109 10-65 (68)
37 2ql2_B Neurod1, neurogenic dif 98.2 3.7E-06 1.3E-10 61.7 6.3 54 49-109 3-56 (60)
38 3mfx_A Sensory BOX/ggdef famil 98.1 9.9E-07 3.4E-11 73.8 2.9 59 136-194 10-68 (129)
39 1d06_A Nitrogen fixation regul 98.1 1.2E-06 4.2E-11 71.3 3.1 59 135-193 18-76 (130)
40 3nja_A Probable ggdef family p 98.1 3.8E-06 1.3E-10 65.9 5.2 60 136-195 10-71 (125)
41 1ll8_A PAS kinase; PAS domain, 98.0 3.7E-06 1.3E-10 66.6 4.7 51 142-192 7-58 (114)
42 4eet_B Phototropin-2; LOV, blu 98.0 7.4E-06 2.5E-10 63.2 6.0 56 139-194 3-61 (115)
43 3h9w_A Diguanylate cyclase wit 98.0 2.4E-06 8.1E-11 67.7 3.1 52 145-196 5-58 (115)
44 4hia_A LOV protein; PAS, HTH, 98.0 8.7E-06 3E-10 69.3 6.3 60 136-195 10-72 (176)
45 3mr0_A Sensory box histidine k 97.9 1.5E-05 5E-10 66.1 6.9 63 133-195 9-73 (142)
46 3eeh_A Putative light and redo 97.9 4.4E-06 1.5E-10 64.8 3.5 62 134-195 12-76 (125)
47 2r78_A Sensor protein; sensory 97.9 4.6E-06 1.6E-10 67.0 3.4 54 134-187 12-65 (117)
48 3bwl_A Sensor protein; structu 97.9 1.8E-05 6.1E-10 63.2 6.8 58 135-194 19-78 (126)
49 3luq_A Sensor protein; PAS, hi 97.9 5.9E-06 2E-10 63.8 3.7 60 134-194 4-63 (114)
50 3t50_A Blue-light-activated hi 97.9 8.4E-06 2.9E-10 64.9 4.2 55 140-194 4-61 (128)
51 3p7n_A Sensor histidine kinase 97.9 2.2E-05 7.4E-10 71.9 7.2 63 133-195 63-128 (258)
52 3mjq_A Uncharacterized protein 97.8 3.2E-06 1.1E-10 66.7 1.0 58 138-195 4-61 (126)
53 2vv6_A FIXL, sensor protein FI 97.8 6.2E-06 2.1E-10 65.8 2.5 48 145-192 5-52 (119)
54 3olo_A Two-component sensor hi 97.8 1.1E-05 3.8E-10 62.9 2.9 51 135-185 15-65 (118)
55 2pr5_A Blue-light photorecepto 97.7 1.1E-05 3.7E-10 65.7 2.6 55 138-192 4-61 (132)
56 1n9l_A PHOT-LOV1, putative blu 97.7 2.9E-05 1E-09 61.4 5.0 48 143-190 3-53 (109)
57 3lyx_A Sensory BOX/ggdef domai 97.7 3.8E-05 1.3E-09 58.9 5.1 60 135-194 9-68 (124)
58 3fc7_A HTR-like protein, senso 97.7 8.2E-06 2.8E-10 64.5 0.8 56 134-189 20-75 (125)
59 2lfh_A DNA-binding protein inh 97.7 1.4E-05 4.7E-10 59.6 1.9 45 56-107 22-66 (68)
60 3fg8_A Uncharacterized protein 97.6 5.3E-06 1.8E-10 66.7 -0.7 57 138-194 17-73 (118)
61 1oj5_A Steroid receptor coacti 97.6 1.3E-05 4.3E-10 67.8 1.0 54 141-195 5-62 (132)
62 2z6d_A Phototropin-2; PAS-fold 97.6 4.6E-05 1.6E-09 58.8 3.8 60 135-194 8-70 (130)
63 3ue6_A Aureochrome1; PAS/LOV d 97.6 4.8E-05 1.7E-09 63.2 4.1 61 134-194 36-99 (166)
64 2wkq_A NPH1-1, RAS-related C3 97.6 5.9E-05 2E-09 71.7 5.2 56 139-194 17-75 (332)
65 3b33_A Sensor protein; structu 97.5 2.3E-05 8E-10 61.6 1.9 53 134-186 8-60 (115)
66 3mxq_A Sensor protein; PSI2, M 97.5 4.8E-05 1.6E-09 65.7 3.1 60 134-194 23-82 (152)
67 3ewk_A Sensor protein; PAS dom 97.4 7.8E-05 2.7E-09 67.0 3.9 59 137-195 115-173 (227)
68 3mqq_A Transcriptional regulat 97.4 5.6E-05 1.9E-09 60.0 2.4 50 135-185 5-54 (120)
69 2v0u_A NPH1-1, LOV2; kinase, t 97.4 7.3E-05 2.5E-09 59.2 2.7 57 138-194 7-66 (146)
70 3d72_A Vivid PAS protein VVD; 97.4 3.9E-05 1.3E-09 63.0 1.0 46 140-186 33-81 (149)
71 1v9y_A Heme PAS sensor protein 97.4 0.00011 3.8E-09 60.6 3.7 61 134-194 41-101 (167)
72 3sw1_A Sensory box protein; li 97.3 9.4E-05 3.2E-09 61.3 2.3 64 131-194 23-89 (162)
73 3k3c_A Protein RV1364C/MT1410; 97.3 0.00011 3.7E-09 61.1 2.5 61 132-194 16-77 (158)
74 4ath_A MITF, microphthalmia-as 97.2 0.00043 1.5E-08 53.6 5.0 44 59-108 3-46 (83)
75 2w0n_A Sensor protein DCUS; si 97.2 9.7E-05 3.3E-09 57.2 1.4 52 135-186 17-71 (118)
76 3a0s_A Sensor protein; PAS-fol 97.2 0.00021 7.3E-09 52.2 3.1 41 145-187 4-44 (96)
77 1nwz_A PYP, photoactive yellow 97.1 0.00014 4.7E-09 61.1 2.1 52 135-186 19-70 (125)
78 2jhe_A Transcription regulator 97.1 0.00043 1.5E-08 60.0 4.4 57 134-190 81-137 (190)
79 1mzu_A PPR; photoactive yellow 97.0 0.00015 5.3E-09 61.1 1.1 51 136-186 25-75 (129)
80 4h10_B Circadian locomoter out 97.0 0.00067 2.3E-08 51.2 4.2 43 4-55 14-56 (71)
81 4hi4_A Aerotaxis transducer AE 96.9 0.00039 1.3E-08 55.9 2.9 48 136-183 8-67 (121)
82 2l0w_A Potassium voltage-gated 96.9 0.0012 4.1E-08 51.6 5.7 56 136-191 19-82 (138)
83 3kx0_X Uncharacterized protein 96.9 0.00029 9.9E-09 61.0 2.1 55 133-189 37-92 (185)
84 2ool_A Sensor protein; bacteri 96.8 0.00059 2E-08 66.6 3.4 56 142-197 41-97 (337)
85 4aya_A DNA-binding protein inh 96.8 0.0016 5.5E-08 51.9 5.1 48 56-110 33-80 (97)
86 2qkp_A Uncharacterized protein 96.6 0.0016 5.6E-08 55.7 4.6 51 134-186 20-73 (151)
87 3a0r_A Sensor protein; four he 96.5 0.00041 1.4E-08 65.9 0.1 55 136-190 11-65 (349)
88 4h10_A ARYL hydrocarbon recept 96.5 0.0017 5.7E-08 49.3 3.4 45 3-53 14-58 (73)
89 2gj3_A Nitrogen fixation regul 96.4 0.0022 7.6E-08 50.7 3.7 38 286-325 17-54 (120)
90 1byw_A Protein (human ERG pota 96.4 0.0017 5.8E-08 48.2 2.8 41 146-186 4-48 (110)
91 3vol_A Aerotaxis transducer AE 96.4 0.0018 6.2E-08 59.1 3.3 48 136-183 25-84 (233)
92 1ll8_A PAS kinase; PAS domain, 96.2 0.0063 2.1E-07 47.4 5.4 40 285-326 9-49 (114)
93 3mqq_A Transcriptional regulat 96.2 0.0016 5.5E-08 51.3 1.8 33 291-325 19-51 (120)
94 1d06_A Nitrogen fixation regul 96.1 0.0027 9.2E-08 51.0 2.8 37 287-325 29-65 (130)
95 3icy_A Sensor protein; sensory 96.0 0.0042 1.4E-07 47.8 3.5 41 287-330 17-59 (118)
96 1n9l_A PHOT-LOV1, putative blu 96.0 0.0029 9.9E-08 49.6 2.3 32 292-325 14-45 (109)
97 4eho_A Bacteriophytochrome, PA 95.9 0.0052 1.8E-07 64.7 4.7 56 140-195 525-580 (635)
98 2vv6_A FIXL, sensor protein FI 95.9 0.0039 1.3E-07 49.1 2.8 36 288-325 7-42 (119)
99 2pr5_A Blue-light photorecepto 95.8 0.0099 3.4E-07 47.7 5.0 35 289-325 14-51 (132)
100 4eet_B Phototropin-2; LOV, blu 95.7 0.0064 2.2E-07 46.1 3.3 36 289-326 12-50 (115)
101 3mfx_A Sensory BOX/ggdef famil 95.7 0.0054 1.8E-07 50.7 2.9 38 287-326 20-57 (129)
102 2r78_A Sensor protein; sensory 95.6 0.011 3.8E-07 46.7 4.3 37 286-324 23-59 (117)
103 2wkq_A NPH1-1, RAS-related C3 95.5 0.0072 2.5E-07 57.0 3.6 38 287-326 24-64 (332)
104 3olo_A Two-component sensor hi 95.5 0.0056 1.9E-07 47.0 2.2 37 287-325 26-62 (118)
105 3h9w_A Diguanylate cyclase wit 95.5 0.0067 2.3E-07 47.2 2.6 26 292-319 12-37 (115)
106 1am9_A Srebp-1A, protein (ster 95.4 0.035 1.2E-06 42.8 6.5 63 4-75 12-74 (82)
107 3t50_A Blue-light-activated hi 95.4 0.0095 3.2E-07 46.6 3.3 38 288-327 11-51 (128)
108 3s7o_A Bacteriophytochrome; bi 95.3 0.0081 2.8E-07 58.6 3.1 55 142-197 51-106 (343)
109 3d72_A Vivid PAS protein VVD; 95.2 0.0081 2.8E-07 48.8 2.2 32 292-325 46-77 (149)
110 3cax_A Uncharacterized protein 95.1 0.022 7.5E-07 55.8 5.7 50 136-187 242-291 (369)
111 4hia_A LOV protein; PAS, HTH, 95.1 0.016 5.6E-07 48.5 4.1 35 290-326 23-60 (176)
112 3luq_A Sensor protein; PAS, hi 95.0 0.02 6.9E-07 43.2 3.9 40 287-330 16-55 (114)
113 4e04_A Bacteriophytochrome (li 95.0 0.0065 2.2E-07 58.9 1.3 55 142-196 28-82 (327)
114 3mr0_A Sensory box histidine k 94.7 0.041 1.4E-06 44.8 5.5 41 287-330 22-64 (142)
115 3p7n_A Sensor histidine kinase 94.7 0.04 1.4E-06 49.8 5.8 40 285-326 74-116 (258)
116 3ue6_A Aureochrome1; PAS/LOV d 94.6 0.017 5.8E-07 47.3 2.9 37 288-326 49-88 (166)
117 3nja_A Probable ggdef family p 94.5 0.02 6.8E-07 43.9 2.8 41 287-330 20-62 (125)
118 1an4_A Protein (upstream stimu 94.3 0.038 1.3E-06 40.6 3.8 48 3-54 10-57 (65)
119 3mjq_A Uncharacterized protein 94.1 0.02 7E-07 44.2 2.2 38 286-325 11-48 (126)
120 1byw_A Protein (human ERG pota 94.1 0.04 1.4E-06 40.3 3.7 36 292-329 12-48 (110)
121 3mxq_A Sensor protein; PSI2, M 93.8 0.033 1.1E-06 47.6 3.0 39 287-327 35-73 (152)
122 1nkp_B MAX protein, MYC proto- 93.3 0.2 6.8E-06 38.4 6.5 62 4-73 8-69 (83)
123 1hlo_A Protein (transcription 93.2 0.2 6.9E-06 38.2 6.4 61 4-72 18-78 (80)
124 3zq5_A Phytochrome-like protei 93.1 0.014 4.9E-07 60.0 -0.5 53 142-194 28-81 (520)
125 2v0u_A NPH1-1, LOV2; kinase, t 92.9 0.065 2.2E-06 41.6 3.3 37 287-325 15-54 (146)
126 3lyx_A Sensory BOX/ggdef domai 92.9 0.1 3.4E-06 39.0 4.2 38 286-325 19-56 (124)
127 3fg8_A Uncharacterized protein 92.8 0.057 1.9E-06 42.5 2.7 40 285-326 23-62 (118)
128 2z6d_A Phototropin-2; PAS-fold 92.5 0.058 2E-06 40.7 2.4 33 292-326 27-59 (130)
129 2l0w_A Potassium voltage-gated 92.4 0.092 3.1E-06 40.3 3.4 41 288-330 33-77 (138)
130 1a0a_A BHLH, protein (phosphat 92.0 0.15 5E-06 37.3 3.8 48 4-54 8-55 (63)
131 4ati_A MITF, microphthalmia-as 91.7 0.15 5.2E-06 42.0 4.1 55 4-64 33-87 (118)
132 3eeh_A Putative light and redo 91.6 0.043 1.5E-06 41.5 0.6 39 285-325 22-63 (125)
133 1mzu_A PPR; photoactive yellow 91.6 0.045 1.5E-06 45.9 0.8 38 285-324 33-70 (129)
134 3nhq_A Bacteriophytochrome; ph 91.5 0.056 1.9E-06 55.4 1.5 54 142-197 25-79 (505)
135 1v9y_A Heme PAS sensor protein 91.2 0.2 6.7E-06 40.5 4.3 38 287-326 53-90 (167)
136 3a0s_A Sensor protein; PAS-fol 90.9 0.11 3.8E-06 37.0 2.3 36 287-324 5-40 (96)
137 1nkp_A C-MYC, MYC proto-oncoge 90.9 0.56 1.9E-05 36.5 6.4 59 5-70 13-71 (88)
138 3bwl_A Sensor protein; structu 90.8 0.057 1.9E-06 42.2 0.6 37 287-325 30-68 (126)
139 3fc7_A HTR-like protein, senso 90.5 0.067 2.3E-06 41.2 0.8 39 285-325 30-68 (125)
140 3sw1_A Sensory box protein; li 90.1 0.21 7.3E-06 40.4 3.6 39 287-327 38-79 (162)
141 1nlw_A MAD protein, MAX dimeri 89.9 0.64 2.2E-05 35.5 5.9 61 5-72 8-68 (80)
142 2ykf_A Pdtas, probable sensor 89.2 0.064 2.2E-06 51.2 0.0 47 138-185 175-224 (305)
143 4eho_A Bacteriophytochrome, PA 89.2 0.22 7.5E-06 52.3 3.7 41 287-330 531-571 (635)
144 1nwz_A PYP, photoactive yellow 88.1 0.34 1.2E-05 40.3 3.4 38 285-324 28-65 (125)
145 3clo_A Transcriptional regulat 87.5 0.26 8.9E-06 45.4 2.6 54 138-191 38-100 (258)
146 3b33_A Sensor protein; structu 85.7 0.15 5.3E-06 39.0 -0.0 38 287-326 20-57 (115)
147 4hi4_A Aerotaxis transducer AE 82.0 0.2 7E-06 39.4 -0.8 37 287-325 18-66 (121)
148 3kx0_X Uncharacterized protein 80.5 0.92 3.2E-05 38.4 2.9 38 287-328 50-88 (185)
149 3k3c_A Protein RV1364C/MT1410; 78.6 0.68 2.3E-05 37.4 1.3 36 287-326 30-66 (158)
150 3vol_A Aerotaxis transducer AE 78.1 0.52 1.8E-05 42.5 0.5 39 285-325 33-83 (233)
151 2w0n_A Sensor protein DCUS; si 74.9 0.32 1.1E-05 36.6 -1.6 36 288-325 29-67 (118)
152 4ath_A MITF, microphthalmia-as 70.7 5.9 0.0002 30.4 4.7 55 12-72 6-60 (83)
153 2qkp_A Uncharacterized protein 70.2 3.7 0.00013 34.4 3.9 36 287-325 32-70 (151)
154 2jhe_A Transcription regulator 68.8 1.3 4.5E-05 37.4 0.7 37 287-325 93-129 (190)
155 3a0r_A Sensor protein; four he 65.2 0.82 2.8E-05 42.7 -1.5 38 285-324 19-56 (349)
156 3u5v_A Protein MAX, transcript 54.9 19 0.00066 26.9 4.9 43 5-54 12-55 (76)
157 2ool_A Sensor protein; bacteri 54.2 4.4 0.00015 39.1 1.5 32 292-325 51-82 (337)
158 1wi9_A Protein C20ORF116 homol 41.3 17 0.00056 27.1 2.6 23 139-161 45-67 (72)
159 3ub6_A Chemoreceptor TLPB; hom 39.7 59 0.002 27.9 6.4 42 143-194 69-111 (181)
160 2p08_A Signal transduction his 31.1 21 0.00073 28.6 1.9 50 144-196 12-64 (115)
161 4exo_A Methyl-accepting chemot 24.1 65 0.0022 26.3 3.8 43 143-194 57-99 (146)
162 3cax_A Uncharacterized protein 24.1 60 0.0021 31.0 4.1 36 286-325 251-286 (369)
163 3s7o_A Bacteriophytochrome; bi 20.1 19 0.00064 34.8 -0.5 32 292-325 61-92 (343)
No 1
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=100.00 E-value=8.6e-50 Score=400.21 Aligned_cols=312 Identities=21% Similarity=0.315 Sum_probs=216.5
Q ss_pred hhhhhhhhhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhccCCCcccccCcc
Q psy7682 42 KCAILQETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDAVQQGEV 121 (383)
Q Consensus 42 ~~~~~~~~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~~~~~~~~~~~~~ 121 (383)
.++..+++.+|+.+||+||+++|+.|.||+.|||. ++ +...||||++||++||+|||+++.... +..+
T Consensus 7 ~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~---~~---~~~~k~dk~~il~~~~~~l~~~~~~~~---~~~~--- 74 (387)
T 4f3l_B 7 QGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPT---CN---AMSRKLDKLTVLRMAVQHMKTLRGATN---PYTE--- 74 (387)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH---HH---HCSSCCCHHHHHHHHHHHHHHHHCC------------
T ss_pred cchhhhhcccccchhhcchHHHHHHHHHHHHhcCC---CC---ccccccCHHHHHHHHHHHHHHhhcccc---cccc---
Confidence 45667788899999999999999999999999998 33 245899999999999999999875432 1111
Q ss_pred CCCCCCcCCccchhhHHHHhhcCcEEEEcCC-ccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcCCCCCC
Q psy7682 122 SSSKPTVITNEVLGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSSHQ 200 (383)
Q Consensus 122 ~~~~P~~~~~~~~~~lll~aldgfi~vvs~d-G~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~~~~~~ 200 (383)
.+++|++++++++.++++++++||++|++.+ |+|+|||++++.+|||+++||+|++++||+||+|++.+.++|......
T Consensus 75 ~~~~~~~~~~~~~~~~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L~~~~~~ 154 (387)
T 4f3l_B 75 ANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSSDTA 154 (387)
T ss_dssp CCSSCTTSCHHHHHHHHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHSCC---
T ss_pred cccCcccCCHHHHHHHHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHhcccccC
Confidence 3578999999999999999999999999997 999999999999999999999999999999999999999999754211
Q ss_pred C----CCCCCCCCCCCC--CCCCCCCCCCceeEEEEEEEcCC------------------------eeeee-eec-CC-C
Q psy7682 201 V----NAWTSDSGGQAG--KRPSLTASTPNRTFNIRLLISST------------------------HLTAG-LSR-AG-G 247 (383)
Q Consensus 201 ~----~~~~s~s~~~~g--~~~~~~~~~~~rsF~cRmk~~~~------------------------~i~~~-~~~-~~-~ 247 (383)
+ +...+....... ........+.+|+|+|||+|... .++|+ +.. ++ .
T Consensus 155 p~~~~~~~~tg~~~~~e~~~~~~~~~~g~~rsF~cRmr~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~G~l~~~~~~ 234 (387)
T 4f3l_B 155 PRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPT 234 (387)
T ss_dssp -----------------------CCCGGGEEEEEEEEECSCC-------------------CCSEEEEEEEEEEEC----
T ss_pred ccccccCcccCCccCCCCCCcccccccCCceeEEEeeecccCCcccccccccccccccccCCCceEEEEEEEEEeccccc
Confidence 1 000000000000 00011124678999999999642 24453 332 21 1
Q ss_pred CCCCCCC--CCCCCCCCceEEEEEeecCCCCc-----ccCCCCceeEEEeCCCCcEEEEcCCCCccccCCcccccccCCC
Q psy7682 248 ENGQDDS--GDVSSEGGPCLMCVARRIPPTDK-----QLSAPIEQFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKT 320 (383)
Q Consensus 248 ~~g~d~~--~~~~~~~~~~LVav~r~ip~~~~-----~i~~~~~~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S 320 (383)
..+.+.+ .+....+..||||++++++++.. ++..+..+|++||++||+|+|||+++ ..+|||.|+||+|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~~~~~ei~~~~~~fi~~~~~dg~~~~vn~~~--~~ilGY~~eEl~g~~ 312 (387)
T 4f3l_B 235 KMGLDEDNEPDNEGCNLSCLVAIGRLHSHMVPQPANGEIRVKSMEYVSRHAIDGKFVFVDQRA--TAILAYLPQELLGTS 312 (387)
T ss_dssp ---------------CCCEEEEEEEECCCSCCSCCCSSSCBCCCEEEEEECTTSBEEEECTHH--HHHHCCCHHHHTTSB
T ss_pred ccccccccccccCCCcceEEEEEEecccCCCCCCcccccccCCceEEEEECCCCEEEEECCCc--ccccCCCHHHHcCCc
Confidence 1111111 11123456799999999765432 34445689999999999999999998 899999999999999
Q ss_pred ccceecCCCCchhHHHHHHHHHHhhhhcccceeecccceecccCCccccccCCcceEEEEee
Q psy7682 321 SATVWTCPNSPLTSTKLLLKALLLSICTDYALVQTDTCMYRSSPSCFGLQGASRTSLWQRIR 382 (383)
Q Consensus 321 ~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~t~~yR~~~~~~~~~~~~~~~~~~~~~ 382 (383)
+|+|+ ||+| ...+ .+.+.+. +-..++..+..|||+.+ +++|+|+..+
T Consensus 313 ~~~~i-HpdD---~~~~-~~~~~~~---l~~~~~~~~~eyR~~~k-------dG~~vWv~~~ 359 (387)
T 4f3l_B 313 CYEYF-HQDD---IGHL-AECHRQV---LQTREKITTNCYKFKIK-------DGSFITLRSR 359 (387)
T ss_dssp GGGTB-CHHH---HHHH-HHHHHHH---TTCSSCEECCCEEEECT-------TSCEEEEEEE
T ss_pred HHHee-CHHH---HHHH-HHHHHHH---HhcCCCeeeEEEEEEcc-------CCCEEEEEEE
Confidence 99988 5655 3222 1112121 11356677778886554 4578888753
No 2
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=100.00 E-value=9.6e-47 Score=374.42 Aligned_cols=298 Identities=23% Similarity=0.356 Sum_probs=211.6
Q ss_pred hhhhhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhccCCCcccccCccCCCC
Q psy7682 46 LQETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQETSSDAVQQGEVSSSK 125 (383)
Q Consensus 46 ~~~~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~~~~~~~~~~~~~~~~~ 125 (383)
..++..|+.+||+||+++|..|.+|++|||. . .+||||++||++||+|||.++.+....... ....+|+
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~---~------~~~~dk~~il~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 78 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG---N------ARKMDKSTVLQKSIDFLRKHKETTAQSDAS--EIRQDWK 78 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCS---S------SCCCCHHHHHHHHHHHHHHHHHHHTSCSCG--GGTSCCS
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCC---C------CCCcCHHHHHHHHHHHHHHHHhhccccccc--ccccccC
Confidence 3456688899999999999999999999995 1 379999999999999999988775422111 1124689
Q ss_pred CCcCCccchhhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcCCCCCCCCCCC
Q psy7682 126 PTVITNEVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSSHQVNAWT 205 (383)
Q Consensus 126 P~~~~~~~~~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~~~~~~~~~~~ 205 (383)
|++++++++.++++++++||++|++.+|+|+|+|+++..+|||+++||+|+++++|+||+|++.+.+++.........+.
T Consensus 79 ~~~~~~~~~~~~~l~a~~~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~ 158 (361)
T 4f3l_A 79 PTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLT 158 (361)
T ss_dssp CTTSCHHHHHHHHHHHTTEEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHHCCCCCCSSS
T ss_pred cccccHHHHHHHHHHhcCceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975431100000
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEEEEEcCC---------eeee-e-eecCC-----CCCCCCCC----CCCCCCCCceE
Q psy7682 206 SDSGGQAGKRPSLTASTPNRTFNIRLLISST---------HLTA-G-LSRAG-----GENGQDDS----GDVSSEGGPCL 265 (383)
Q Consensus 206 s~s~~~~g~~~~~~~~~~~rsF~cRmk~~~~---------~i~~-~-~~~~~-----~~~g~d~~----~~~~~~~~~~L 265 (383)
+........++|+|||++... .++| + +.++. ...|...+ .....++..||
T Consensus 159 ----------~~~~~~~~~~~f~cr~~~~~~~~~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l 228 (361)
T 4f3l_A 159 ----------PEYLKSKNQLEFCCHMLRGTIDPKEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCF 228 (361)
T ss_dssp ----------CGGGCGGGEEEEEEEEECCCSCSSSCCCEEEEEEEEEEEECC------------------------CEEE
T ss_pred ----------cccccccCceeEEEEEeccCCCCCCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEE
Confidence 001123457899999998642 1222 2 22221 11121111 01123457899
Q ss_pred EEEEeecCCCCc----ccCCCCceeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceecCCCCchhHHHHHHHH
Q psy7682 266 MCVARRIPPTDK----QLSAPIEQFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTCPNSPLTSTKLLLKA 341 (383)
Q Consensus 266 Vav~r~ip~~~~----~i~~~~~~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~~~~~~~~~~~~~~~ 341 (383)
||++|+++.... .++.+..+|+++|++||+|+|||+++ ..++||.|+||+|+++|+|+ ||+| ...+
T Consensus 229 vai~r~~~~~~~~e~~~i~~~~~~f~~~~~~dg~~~~vn~~~--~~ilGY~~eEl~g~~~~~~i-HpdD---~~~~---- 298 (361)
T 4f3l_A 229 VATVRLATPQFIKEMCTVEEPNEEFTSRHSLEWKFLFLDHRA--PPIIGYLPFEVLGTSGYDYY-HVDD---LENL---- 298 (361)
T ss_dssp EEEEEESSCCSSEEECSCSSSCCEEEEEECTTSBEEEECTTS--HHHHCCCHHHHTTSBGGGGB-CHHH---HHHH----
T ss_pred EEEEecCCCCcccccccccCCcceeEEEEcCCceEEEECChh--hhhhCcCHHHHcCCCHHHeE-CHHH---HHHH----
Confidence 999999865542 25556689999999999999999998 89999999999999999987 5555 2222
Q ss_pred HHhhhhcccceeecccceecccCCccccccCCcceEEEEee
Q psy7682 342 LLLSICTDYALVQTDTCMYRSSPSCFGLQGASRTSLWQRIR 382 (383)
Q Consensus 342 ~~~~~~~~~~~~q~~t~~yR~~~~~~~~~~~~~~~~~~~~~ 382 (383)
...+..++..|+..+..||+..+ +++|+|+..+
T Consensus 299 -~~~~~~~l~~g~~~~~eyR~~~k-------dG~~vWv~~~ 331 (361)
T 4f3l_A 299 -AKCHEHLMQYGKGKSCYYRFLTK-------GQQWIWLQTH 331 (361)
T ss_dssp -HHHHHHHHHHSEEECCCEEEECT-------TSEEEEEEEE
T ss_pred -HHHHHHHHhCCCcceEEEEEEec-------CCCEEEEEEE
Confidence 11122334567777778886554 4578888643
No 3
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=100.00 E-value=1.4e-37 Score=304.40 Aligned_cols=228 Identities=17% Similarity=0.166 Sum_probs=157.3
Q ss_pred CCCCCcCCccchhhH----HHHhhcCcEEEEcCC-ccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcCCC
Q psy7682 123 SSKPTVITNEVLGPL----LLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPS 197 (383)
Q Consensus 123 ~~~P~~~~~~~~~~l----ll~aldgfi~vvs~d-G~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~~~ 197 (383)
+..+++++++++.++ +|+|+|||++||+++ |+|+|+|++|+.+|||+|+||+|+|+|||+||+|+++|+++|++.
T Consensus 12 ~~~~~~~s~eel~~l~~e~lLqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~qL~~~ 91 (320)
T 4dj2_A 12 AMDMSTYTLEELEHITSEYTLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGSTTPS 91 (320)
T ss_dssp --CCSEECHHHHHHHHHHHTTSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHHHCCTT
T ss_pred ccCccccCHHHHHHHHHHHHHhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHHhhccc
Confidence 345788899999887 699999999999995 999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEEEcCC--------eeeee-eecCCCCCCCCCCCCCCCCCCceEEEE
Q psy7682 198 SHQVNAWTSDSGGQAGKRPSLTASTPNRTFNIRLLISST--------HLTAG-LSRAGGENGQDDSGDVSSEGGPCLMCV 268 (383)
Q Consensus 198 ~~~~~~~~s~s~~~~g~~~~~~~~~~~rsF~cRmk~~~~--------~i~~~-~~~~~~~~g~d~~~~~~~~~~~~LVav 268 (383)
. ...|.+.+ +.+.. ....+.+|+|+|||||+.. .++|+ +.+... ..+ ......++|++
T Consensus 92 ~--lp~~~~~~--~~~~~--~~~~~~~rsF~CRmr~~l~k~~~~~Y~~~~~~g~lk~~~--~~~-----g~~~~~~~li~ 158 (320)
T 4dj2_A 92 R--LPTWGTGT--SAGSG--LKDFTQEKSVFCRIRGGPDRDPGPRYQPFRLTPYVTKIR--VSD-----GAPAQPCCLLI 158 (320)
T ss_dssp T--CCBTTC-----------------CCCEEEEECCC-------CCEEEEEEEEEEEEC--C--------CCCEEEEEEE
T ss_pred C--CCCcccCc--ccccc--cccCCCceeEEEEEEEeccCCCcccEEEEEEEEEecccc--cCC-----CCcccceeeee
Confidence 2 22232211 00000 0124578999999999642 24453 332111 111 11234566666
Q ss_pred EeecCCCCc--ccCCCCceeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceecCCCCchhHHHHHHHHHHhhh
Q psy7682 269 ARRIPPTDK--QLSAPIEQFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTCPNSPLTSTKLLLKALLLSI 346 (383)
Q Consensus 269 ~r~ip~~~~--~i~~~~~~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~~~~~~~~~~~~~~~~~~~~ 346 (383)
+.|++++.. .+.....+|++||++||+|+|||+++ ..+|||.|+||+|+++|+|+ ||+| +. .+ .++ +
T Consensus 159 a~~~~s~~~~~~i~~~~~~Fitrh~~dG~~~yvd~~~--~~lLGY~peELig~s~~~~v-HPdD-~~--~~-~~~----~ 227 (320)
T 4dj2_A 159 AERIHSGYEAPRIPPDKRIFTTRHTPSCLFQDVDERA--APLLGYLPQDLLGAPVLLFL-HPED-RP--LM-LAI----H 227 (320)
T ss_dssp EEECCCSSSSSCCCGGGCEEEEEECTTCBEEEECTTH--HHHHSCCHHHHTTSBGGGGB-CGGG-HH--HH-HHH----H
T ss_pred eeeccCccccccccCCCceEEEEecCCceEEEcCcce--eccCCcChHHHcCCcHHHhC-CHHH-HH--HH-HHH----H
Confidence 778866532 23344589999999999999999998 89999999999999999998 5666 32 21 111 1
Q ss_pred hcccc-eeecc-cceecccCCccccccCCcceEEEEe
Q psy7682 347 CTDYA-LVQTD-TCMYRSSPSCFGLQGASRTSLWQRI 381 (383)
Q Consensus 347 ~~~~~-~~q~~-t~~yR~~~~~~~~~~~~~~~~~~~~ 381 (383)
..+.. +||.. +..|||+.++ ++|+|++.
T Consensus 228 ~~~l~~~g~~~~~~~yR~~~kd-------G~~vwvet 257 (320)
T 4dj2_A 228 KKILQLAGQPFDHSPIRFCARN-------GEYVTMDT 257 (320)
T ss_dssp HHHTTSSSCCEECCCEEEECSS-------SCEEEEEC
T ss_pred HHHHhcCCCcccceEEEEEccC-------CCEEEEEE
Confidence 12222 56766 5688866554 46888753
No 4
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=100.00 E-value=1.2e-36 Score=297.41 Aligned_cols=191 Identities=16% Similarity=0.140 Sum_probs=140.5
Q ss_pred CCCCcCCccchhhH----HHHhhcCcEEEEcCC-ccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcCCCC
Q psy7682 124 SKPTVITNEVLGPL----LLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSS 198 (383)
Q Consensus 124 ~~P~~~~~~~~~~l----ll~aldgfi~vvs~d-G~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~~~~ 198 (383)
..+++++++|+.++ +|+|+|||++||+.+ |+|+|||++++.+|||+|+||+|++++||+||+|+++|+++|+...
T Consensus 13 ~~~~~~s~~el~~~~~e~~L~aldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~D~~~f~~ql~~~~ 92 (317)
T 4dj3_A 13 EDVTVYSLEDLTALASEHTSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAHTAPTQ 92 (317)
T ss_dssp CCCCBCCTTTTTSTTHHHHTSCTTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGGGHHHHHHHTCTTT
T ss_pred cCccccCHHHHHhhhhHHHHhccCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchhhhcChhhHHHHHHhhcccC
Confidence 34567788888766 999999999999996 9999999999999999999999999999999999999999995332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEEEcCC-------eeeee-eecCCCCCCCCCCCCCCCCCCceEEEEEe
Q psy7682 199 HQVNAWTSDSGGQAGKRPSLTASTPNRTFNIRLLISST-------HLTAG-LSRAGGENGQDDSGDVSSEGGPCLMCVAR 270 (383)
Q Consensus 199 ~~~~~~~s~s~~~~g~~~~~~~~~~~rsF~cRmk~~~~-------~i~~~-~~~~~~~~g~d~~~~~~~~~~~~LVav~r 270 (383)
...+.... + ++ .......+|+|+|||||+.+ .++|+ |..... +.. ...+...||||+++
T Consensus 93 --lP~~~~~~--~-~~--~~~~~~~~rsF~CRmr~g~~~~~~~y~~~~~~g~l~~~~--~~~----~~~~~~~clv~v~~ 159 (317)
T 4dj3_A 93 --LPFWNNWT--Q-RA--SQYECAPAKPFFCRICGGGDREKRHYSPFRILPYLVHVH--SSA----QPEPEPCCLTLVEK 159 (317)
T ss_dssp --CCCCC---------------CCCCCCEEEEECCCCCSSSCCCEEEEEEEEEEECC--CCS----SSCSCEEEEEEEEE
T ss_pred --CCCcCCCc--c-cc--cccCCCCCceEEEEEeCCCCCCCCceEEEEEEeEEEecc--CCC----CCCCCceEEEEEEe
Confidence 11111100 0 00 01135678999999999654 34553 332111 100 01234579999987
Q ss_pred ecCCCCc-ccCCCCceeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceecCCCC
Q psy7682 271 RIPPTDK-QLSAPIEQFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTCPNS 330 (383)
Q Consensus 271 ~ip~~~~-~i~~~~~~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~~~~ 330 (383)
..|.+.. .+.....+|++||++||+|+|||+++ ..+|||.|+||+|+++|+|+ ||+|
T Consensus 160 ~~~~~~~~~~~~~~~~Fitrh~~dG~~~yvs~~~--~~lLGY~peELig~s~~~~v-HPdD 217 (317)
T 4dj3_A 160 IHSGYEAPRIPVDKRIFTTTHTPGCVFLEVDERA--VPLLGYLPQDLIGTSILTYL-HPED 217 (317)
T ss_dssp CCCTTSSSCCCGGGCEEEEEECTTSBEEEECTTH--HHHHSCCHHHHTTSBGGGGB-CTTT
T ss_pred cCCCcCCCCcccCCCceEEEecCCCeEEEEChHH--hhhcCcChHHHcCCCHHHeE-CHHH
Confidence 6664432 11112369999999999999999998 89999999999999999998 6777
No 5
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=100.00 E-value=4.4e-36 Score=292.46 Aligned_cols=218 Identities=13% Similarity=0.114 Sum_probs=136.8
Q ss_pred hhhHHHHhhcCcEEEEcCC-ccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcCCCCCCCCCCCCCCCCCC
Q psy7682 134 LGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSSHQVNAWTSDSGGQA 212 (383)
Q Consensus 134 ~~~lll~aldgfi~vvs~d-G~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~~~~~~~~~~~s~s~~~~ 212 (383)
.++++|+|+|||++||+++ |+|+|+|++++.+|||+|+||+|+|++||+||+|+++++++|++.. ...+....+.+.
T Consensus 16 ~~~lll~a~dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~~~~L~~~~--lp~~~~~~~~~~ 93 (309)
T 3gdi_A 16 TSEYIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYTTPYK--LPPWSVCSGLDS 93 (309)
T ss_dssp SCC----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHTCTTS--SCBCC-------
T ss_pred HHHHHHHhcCCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHHHHhccccC--CCCcccccCccc
Confidence 5689999999999999996 9999999999999999999999999999999999999999997632 111211110000
Q ss_pred CCCCCCCCCCCceeEEEEEEEcCC--------eeeee-eecCCCCCCCCCCCCCCCCCCceEEEEEeecCCCCcccCC--
Q psy7682 213 GKRPSLTASTPNRTFNIRLLISST--------HLTAG-LSRAGGENGQDDSGDVSSEGGPCLMCVARRIPPTDKQLSA-- 281 (383)
Q Consensus 213 g~~~~~~~~~~~rsF~cRmk~~~~--------~i~~~-~~~~~~~~g~d~~~~~~~~~~~~LVav~r~ip~~~~~i~~-- 281 (383)
. + .....+|+|+||||++.. .++|+ +.+... ..+ ......|||+++.++++.......
T Consensus 94 ~--~--~~~~~~rsF~CRmr~~~~~~~~~~Y~~~~~~g~lk~~~--~~~-----g~~~~~~lv~~a~~~~s~~~~p~~~~ 162 (309)
T 3gdi_A 94 F--T--QECMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQ--EQQ-----GAESQLCCLLLAERVHSGYEAPRIPP 162 (309)
T ss_dssp -----------CCCEEEEECCCC----CCCCEEEEEEEEEEECC---------------EEEEEEEEECCCTTSSSCCCG
T ss_pred c--c--cccCCceeEEEEEEccccCCCccceEEEEEEeeecccc--CCC-----CCcCccEEEEEEEecCCCccCCCcCC
Confidence 0 0 012357999999998631 24553 332111 011 113457888888888654321111
Q ss_pred CCceeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceecCCCCchhHHHHHHHHHHhhhhcccceeeccc-cee
Q psy7682 282 PIEQFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTCPNSPLTSTKLLLKALLLSICTDYALVQTDT-CMY 360 (383)
Q Consensus 282 ~~~~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~t-~~y 360 (383)
...+|++||++||+|+|||+++ ..+|||.|+||+|+++|+|+ ||+| +.... ++... +. -.++|..+ ..|
T Consensus 163 ~~~~Fitrh~~dG~~~yvd~~~--~~lLGY~peELig~s~~~~i-HpdD-~~~~~---~~~~~-~l--~~~g~~~~~~~y 232 (309)
T 3gdi_A 163 EKRIFTTTHTPNCLFQAVDERA--VPLLGYLPQDLIETPVLVQL-HPSD-RPLML---AIHKK-IL--QAGGQPFDYSPI 232 (309)
T ss_dssp GGCEEEEEECTTCBEEEECTTH--HHHHSCCHHHHTTSBHHHHB-CTTS-HHHHH---HHHHH-HH--HTTTCCEEEEEE
T ss_pred CCceEEEEecCCCeEEEECccc--ccccCcCHHHHcCCCHHHhC-CHHH-HHHHH---HHHHH-HH--hcCCceeeceEE
Confidence 2258999999999999999998 89999999999999999998 6777 33211 11111 11 12466555 578
Q ss_pred cccCCccccccCCcceEEEEe
Q psy7682 361 RSSPSCFGLQGASRTSLWQRI 381 (383)
Q Consensus 361 R~~~~~~~~~~~~~~~~~~~~ 381 (383)
||+.++ ++|+|++-
T Consensus 233 R~~~kd-------G~~vwvet 246 (309)
T 3gdi_A 233 RFRTRN-------GEYITLDT 246 (309)
T ss_dssp EEECTT-------SCEEEEEE
T ss_pred EEEccC-------CCEEEEEE
Confidence 876554 46888763
No 6
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.96 E-value=1.7e-30 Score=256.05 Aligned_cols=173 Identities=20% Similarity=0.288 Sum_probs=123.2
Q ss_pred hcCcEEEEc-CCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy7682 142 LEGFLFVVN-PDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSSHQVNAWTSDSGGQAGKRPSLTA 220 (383)
Q Consensus 142 ldgfi~vvs-~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~~~~~~~~~~~s~s~~~~g~~~~~~~ 220 (383)
.|||++||+ .+|+|+|+|+++..+|||+++||+|++++||+||+|++.+.++|+... +++...+ ..
T Consensus 2 ~dgF~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~L~~gl----~~~~~~~---------~~ 68 (339)
T 3rty_A 2 EDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGI----PIAESRG---------SV 68 (339)
T ss_dssp CSCEEEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHHHHTTS----CCC---------------
T ss_pred CcEEEEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHHHhcCC----CCCcccc---------CC
Confidence 489999999 599999999999999999999999999999999999999999998653 1211100 01
Q ss_pred CCCceeEEEEEEEcCCeeee----------eeecC-----CCCCCCCCCCC---CCCCCCceEEEEEeecCCCCcc---c
Q psy7682 221 STPNRTFNIRLLISSTHLTA----------GLSRA-----GGENGQDDSGD---VSSEGGPCLMCVARRIPPTDKQ---L 279 (383)
Q Consensus 221 ~~~~rsF~cRmk~~~~~i~~----------~~~~~-----~~~~g~d~~~~---~~~~~~~~LVav~r~ip~~~~~---i 279 (383)
...+++|||||+++..++.+ .|.++ ......+...+ ...+...|||++|+|++++... +
T Consensus 69 ~~~~rsffcR~~rr~~~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~p~e~ 148 (339)
T 3rty_A 69 PKDAKSTFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEI 148 (339)
T ss_dssp ----CCEEEEEEECCC-------------CCEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCSSTTBB
T ss_pred CCCCceEEEEEEeccCCCCcCCcceecccccceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccccccchh
Confidence 34578999999865332111 12221 01111111000 0123457899999999876541 1
Q ss_pred -CCCCceeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceecCCCC
Q psy7682 280 -SAPIEQFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTCPNS 330 (383)
Q Consensus 280 -~~~~~~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~~~~ 330 (383)
......|++||++||+|+|||+++ ..+|||.|+||+|+++|+|+ ||+|
T Consensus 149 ~~~~~~~fi~r~~~dG~~~yvn~~~--~~lLGY~peELiG~s~~~~v-HPdD 197 (339)
T 3rty_A 149 LSQKSPKFAIRHTATGIISHVDSAA--VSALGYLPQDLIGRSIMDFY-HHED 197 (339)
T ss_dssp CCSSCCEEEEEEETTCBEEEECTTH--HHHHCCCHHHHTTSBGGGGB-CGGG
T ss_pred hccCCceEEEEECCCCeEEEcChhh--hcccCCCHHHHcCCcHHHEE-CHHH
Confidence 123489999999999999999998 89999999999999999998 6776
No 7
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=99.61 E-value=5.2e-17 Score=137.66 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=61.5
Q ss_pred CCceeEEEeCCCCcEEEEcCCCCccccCCccc--ccccCCCccceecCCCCch--hHHHHHHHHHHhhhhcccceeeccc
Q psy7682 282 PIEQFTMKLDRSGTIIGMDTSGVSQTHTQYLN--KAVACKTSATVWTCPNSPL--TSTKLLLKALLLSICTDYALVQTDT 357 (383)
Q Consensus 282 ~~~~F~tRHsldgkf~~vD~r~l~~~ilGY~p--~eLiG~S~yd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~q~~t 357 (383)
+.++|++||++||||+|||++++ ..+|.| +||+|+|+|+|+ |++|.. .++++ +..++.+||+.|
T Consensus 5 ~~e~F~sRh~~dGKf~~vDq~~~---r~~~~~g~qdLlGrsiy~f~-H~~D~~~s~l~~h--------~~~vl~~Gq~~S 72 (132)
T 1oj5_A 5 GVESFMTKQDTTGKIISIDTSSL---RAAGRTGWEDLVRKCIYAFF-QPQGREPSYARQL--------FQEVMTRGTASS 72 (132)
T ss_dssp -CCEEEEEECTTCCEEEEECHHH---HTTCCSCHHHHHHHHHHHHT-SCBTTBCCHHHHH--------HHHHHHHSEEEC
T ss_pred CceeeEEeecCCCcEEEEecccc---cccccccHHHHHHHHHHHHh-CcccchHHHHHHH--------HHHHHHcCCccc
Confidence 45899999999999999999862 366666 999999999998 455512 33332 234557899999
Q ss_pred ceecccCCccccccCCcceEEEEe
Q psy7682 358 CMYRSSPSCFGLQGASRTSLWQRI 381 (383)
Q Consensus 358 ~~yR~~~~~~~~~~~~~~~~~~~~ 381 (383)
..|||+.+.+ +|+|++-
T Consensus 73 ~~YRfr~k~g-------~~V~~qT 89 (132)
T 1oj5_A 73 PSYRFILNDG-------TMLSAHT 89 (132)
T ss_dssp CCEEEECTTS-------CEEEEEE
T ss_pred cceEEEecCC-------cEEEEEE
Confidence 9999887743 6889874
No 8
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.56 E-value=1.5e-15 Score=125.43 Aligned_cols=60 Identities=17% Similarity=0.307 Sum_probs=51.2
Q ss_pred hHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcC
Q psy7682 136 PLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 136 ~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~ 195 (383)
..+++++++||++++.+|+|+|+|+++..+|||+++|++|+++++|+||+|++.+.+.+.
T Consensus 2 ~~lle~~~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~ 61 (111)
T 2vlg_A 2 EFPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY 61 (111)
T ss_dssp -------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH
T ss_pred cchhhcCCCEEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh
Confidence 568899999999999999999999999999999999999999999999999999988774
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.33 E-value=1e-12 Score=100.64 Aligned_cols=61 Identities=28% Similarity=0.465 Sum_probs=52.7
Q ss_pred hhhhhhhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhcc
Q psy7682 44 AILQETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE 110 (383)
Q Consensus 44 ~~~~~~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~~ 110 (383)
++.+++..|+.+||+||+++|..|.+|+.|||.+ . ....|+||++||++||.|||.++.+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~---~---~~~~KldKasIL~~tV~ylk~l~~~~ 65 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC---N---AMSRKLDKLTVLRMAVQHMKTLRGAW 65 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH---H---TCSSCCCHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccc---c---cccccccHHHHHHHHHHHHHHHhcCc
Confidence 4567788999999999999999999999999983 1 23479999999999999999887664
No 10
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.28 E-value=9.3e-13 Score=131.44 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=73.0
Q ss_pred hcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy7682 142 LEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSSHQVNAWTSDSGGQAGKRPSLTAS 221 (383)
Q Consensus 142 ldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~~~~~~~~~~~s~s~~~~g~~~~~~~~ 221 (383)
...|++..+.||+|+|+|+++..+|||+++||+|+++++|+||+|.+.+...+..... ..
T Consensus 277 ~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~--------------------~~ 336 (387)
T 4f3l_B 277 SMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQ--------------------TR 336 (387)
T ss_dssp CCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTT--------------------CS
T ss_pred CceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHh--------------------cC
Confidence 4558888999999999999999999999999999999999999999999877643210 01
Q ss_pred CCceeEEEEEEEcCCeeeeeeecCCCCC--CCCCCCCCCCCCCceEEEEEeecCC
Q psy7682 222 TPNRTFNIRLLISSTHLTAGLSRAGGEN--GQDDSGDVSSEGGPCLMCVARRIPP 274 (383)
Q Consensus 222 ~~~rsF~cRmk~~~~~i~~~~~~~~~~~--g~d~~~~~~~~~~~~LVav~r~ip~ 274 (383)
+...++..|++++.+. |.|..... -.+. ......++|++.+.|..
T Consensus 337 ~~~~~~eyR~~~kdG~----~vWv~~~~~~~~~~----~~g~~~~ivg~~~dIT~ 383 (387)
T 4f3l_B 337 EKITTNCYKFKIKDGS----FITLRSRWFSFMNP----WTKEVEYIVSTNTVVLA 383 (387)
T ss_dssp SCEECCCEEEECTTSC----EEEEEEEEEEEEET----TTTEEEEEEEEEEECC-
T ss_pred CCeeeEEEEEEccCCC----EEEEEEEEEEEECC----CCCCEEEEEEEEEEcch
Confidence 1234567899988752 22211000 0000 01233588999888753
No 11
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.23 E-value=1.4e-11 Score=121.57 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=48.9
Q ss_pred cCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcC
Q psy7682 143 EGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 143 dgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~ 195 (383)
..|++..+.||+|+|+|+++..+|||+++||+|+++++|+||+|.+.+...+.
T Consensus 251 ~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~ 303 (361)
T 4f3l_A 251 EEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHE 303 (361)
T ss_dssp CEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHH
T ss_pred ceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHH
Confidence 56788889999999999999999999999999999999999999998877664
No 12
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.23 E-value=1.2e-11 Score=93.95 Aligned_cols=54 Identities=33% Similarity=0.491 Sum_probs=48.5
Q ss_pred hhhhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhc
Q psy7682 47 QETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109 (383)
Q Consensus 47 ~~~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~ 109 (383)
+++..|+.+||+||+++|..|.+|+.|||. + ..|+||++||+.||.|||.++..
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~---~------~~K~dK~sIL~~aI~yik~Lq~~ 60 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPG---N------ARKMDKSTVLQKSIDFLRKHKEI 60 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSS---C------CSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCC---C------CCCCcHHHHHHHHHHHHHHHHHh
Confidence 556799999999999999999999999997 2 26999999999999999988754
No 13
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.20 E-value=4.2e-11 Score=96.76 Aligned_cols=112 Identities=14% Similarity=0.208 Sum_probs=78.5
Q ss_pred hhhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcCCCCCCCCCCCCCCCCCCC
Q psy7682 134 LGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSSHQVNAWTSDSGGQAG 213 (383)
Q Consensus 134 ~~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~~~~~~~~~~~s~s~~~~g 213 (383)
+..++++++..+|++++.+|+|+|+|+++..+|||+++|++|+++++++||+|.+.+...+.....
T Consensus 3 ~~~ll~e~~~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~-------------- 68 (121)
T 3f1p_B 3 FKGLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVK-------------- 68 (121)
T ss_dssp -----CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTT--------------
T ss_pred cccceecCCCceEEEECCCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHh--------------
Confidence 455778889999999999999999999999999999999999999999999999998877643210
Q ss_pred CCCCCCCCCCceeEEEEEEEcCCe---eeeeeecCCCCCCCCCCCCCCCCCCceEEEEEeecCC
Q psy7682 214 KRPSLTASTPNRTFNIRLLISSTH---LTAGLSRAGGENGQDDSGDVSSEGGPCLMCVARRIPP 274 (383)
Q Consensus 214 ~~~~~~~~~~~rsF~cRmk~~~~~---i~~~~~~~~~~~g~d~~~~~~~~~~~~LVav~r~ip~ 274 (383)
..+....+.+|++++.+. +.+...+.. +. ......++|++++.|..
T Consensus 69 ------~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~-----~~----~~g~~~~iv~~~~DIT~ 117 (121)
T 3f1p_B 69 ------LKGQVLSVMFRFRSKNQEWLWMRTSSFTFQ-----NP----YSDEIEYIICTNTNVKN 117 (121)
T ss_dssp ------STTCCEEEEEEEECTTSCEEEEEEEEEEEC-----CT----TCCCCCEEEEEEEECCC
T ss_pred ------cCCCcccEEEEEEecCCCEEEEEEEEEEEE-----CC----CCCceeEEEEEeEEccc
Confidence 012335678899887752 122222211 00 01234678999988854
No 14
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.10 E-value=2.3e-10 Score=103.98 Aligned_cols=149 Identities=10% Similarity=0.101 Sum_probs=99.2
Q ss_pred cEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy7682 145 FLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSSHQVNAWTSDSGGQAGKRPSLTASTPN 224 (383)
Q Consensus 145 fi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~~~~~~~~~~~s~s~~~~g~~~~~~~~~~~ 224 (383)
+|+++|.+|+|+|+|+++..++||+++|++|+++.++.++.+...+...+.... ..+..
T Consensus 1 ~i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~ 59 (227)
T 3ewk_A 1 LVSITDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTI---------------------SRGNI 59 (227)
T ss_dssp CEEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHH---------------------TTTCC
T ss_pred CEEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHH---------------------HcCCe
Confidence 378899999999999999999999999999999988877665544433332110 01122
Q ss_pred eeEEEEEEEcCCe---eeeeeecCCCCCCCCCCCCCCCCCCceEEEEEeecCCCCc---c------cCCCCceeEEEeCC
Q psy7682 225 RTFNIRLLISSTH---LTAGLSRAGGENGQDDSGDVSSEGGPCLMCVARRIPPTDK---Q------LSAPIEQFTMKLDR 292 (383)
Q Consensus 225 rsF~cRmk~~~~~---i~~~~~~~~~~~g~d~~~~~~~~~~~~LVav~r~ip~~~~---~------i~~~~~~F~tRHsl 292 (383)
..+..+++++.+. +.....+.... ......++++.+.++.... . +-......+...+.
T Consensus 60 ~~~e~~~~~~dG~~~~~~~~~~p~~d~----------~g~~~~~~~~~~DIT~~k~~e~~l~~~~~~~~~~~~~i~~~d~ 129 (227)
T 3ewk_A 60 WQGEFCNRRKDGTRYWVDSTIVPLMDN----------AGKPRQYISIRRDITAQKEAEAQLARLKQAMDANSEMILLTDR 129 (227)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEEEECS----------SSCEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred EEEEEEEEcCCCCEEeeeeEEEEEEcC----------CCCEEEEEEEEEehhhHHHHHHHHHHHHHHHhcCcCeEEEEcC
Confidence 3445566665542 11222221111 1233568899999876542 0 10112334555689
Q ss_pred CCcEEEEcCCCCccccCCcccccccCCCccceec
Q psy7682 293 SGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWT 326 (383)
Q Consensus 293 dgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~ 326 (383)
+|+|+++++.. ..++||.++|++|++...+++
T Consensus 130 ~g~i~~~N~~~--~~~~G~~~~e~~g~~~~~l~~ 161 (227)
T 3ewk_A 130 AGRIIYANPAL--CRFSGMAEGELLGQSPSILDS 161 (227)
T ss_dssp TSCEEEECHHH--HHHHTCCTHHHHSSCGGGGBC
T ss_pred CCcEEEEchHH--HHHhCCCHHHHcCCChhhccC
Confidence 99999999998 899999999999999887763
No 15
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.02 E-value=2.2e-10 Score=85.21 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=48.7
Q ss_pred hhhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhc
Q psy7682 48 ETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109 (383)
Q Consensus 48 ~~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~ 109 (383)
++.+|+.+||+||+++|..|.+|..|||.+ ... .....+++|++||.+||.|||.++..
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~-~~~--~~~~~k~sKa~iL~~Ai~YIk~Lq~~ 60 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAE-WKQ--QNVSAAPSKATTVEAACRYIRHLQQN 60 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHH-HHT--SSCCCCSCTTHHHHHHHHHHHHHHTC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCc-ccc--cccCCcccHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999982 111 11247999999999999999987643
No 16
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=98.88 E-value=9.2e-10 Score=82.38 Aligned_cols=58 Identities=26% Similarity=0.397 Sum_probs=47.9
Q ss_pred hhhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhc
Q psy7682 48 ETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109 (383)
Q Consensus 48 ~~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~ 109 (383)
++..|+..||+||+++|..|.+|..+||.+ .. . +...|+||++||+.||.||+.++..
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~--~~-~-~~~~k~~Ka~IL~~ai~YI~~Lq~~ 62 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDS--SM-E-STKSGQSKGGILSKASDYIQELRQS 62 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCC--CC-C-SSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCc--cc-c-cccCCCCHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999983 11 0 1135899999999999999987643
No 17
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=98.88 E-value=5e-10 Score=89.64 Aligned_cols=54 Identities=26% Similarity=0.453 Sum_probs=50.0
Q ss_pred hcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcC
Q psy7682 142 LEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 142 ldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~ 195 (383)
...||+++|.+|+|+|+|+++..+|||+++|++|+++++++||+|.+.+...+.
T Consensus 8 ~~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~ 61 (117)
T 3f1p_A 8 SKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQ 61 (117)
T ss_dssp GGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHH
T ss_pred CccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999998887764
No 18
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=98.84 E-value=3.3e-09 Score=83.05 Aligned_cols=54 Identities=28% Similarity=0.411 Sum_probs=48.3
Q ss_pred hhhhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhc
Q psy7682 47 QETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109 (383)
Q Consensus 47 ~~~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~ 109 (383)
.++..|+.+||+||+++|..|.+|..+||. + ..|+||++||..||.||+.++..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~---~------~~k~~Ka~IL~~Ai~YI~~Lq~~ 58 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVG---T------EAKLNKSAVLRKAIDYIRFLQHS 58 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---S------SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccC---C------CCCCCHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999998 2 26999999999999999987754
No 19
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=98.71 E-value=1.3e-08 Score=85.00 Aligned_cols=58 Identities=33% Similarity=0.444 Sum_probs=44.8
Q ss_pred hhhhhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhc
Q psy7682 46 LQETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109 (383)
Q Consensus 46 ~~~~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~ 109 (383)
-+++.+|+.+||+||+++|..|.+|..+||.+ . ....|+||++||..||.||+.++..
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~--~----~~~~k~~Ka~IL~~aieYIk~Lq~~ 82 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKS--N----DPDMRWNKGTILKASVDYIRKLQRE 82 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc--c----CccccCCHHHHHHHHHHHHHHHHHH
Confidence 34677999999999999999999999999983 1 1136999999999999999988653
No 20
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.67 E-value=2.8e-08 Score=77.39 Aligned_cols=56 Identities=14% Similarity=0.326 Sum_probs=48.8
Q ss_pred hhhhhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhc
Q psy7682 46 LQETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109 (383)
Q Consensus 46 ~~~~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~ 109 (383)
..++..|+..||+||+.+|..|.+|..+||.. + ..|++|++||+.|+.||+.+...
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~--~------~~k~sK~~iL~~Ai~YI~~L~~~ 65 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSL--Q------GEKASRAQILDKATEYIQYMRRK 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGG--T------TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCC--C------CCCccHHHHHHHHHHHHHHHHHH
Confidence 35677999999999999999999999999982 1 26999999999999999987643
No 21
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=98.64 E-value=3.4e-08 Score=77.36 Aligned_cols=54 Identities=15% Similarity=0.340 Sum_probs=47.5
Q ss_pred hhhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhc
Q psy7682 48 ETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109 (383)
Q Consensus 48 ~~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~ 109 (383)
++..|+..||+||+.+|..|.+|..+||.. + ..|+||++||+.|+.||+.+...
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~--~------~~k~sK~~iL~~Ai~YI~~L~~~ 55 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSL--Q------GEKASRAQILDKATEYIQYMRRK 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGG--T------TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCC--C------CCCCCHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999982 1 36999999999999999987743
No 22
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.63 E-value=2.3e-08 Score=96.93 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=60.3
Q ss_pred CcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy7682 144 GFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSSHQVNAWTSDSGGQAGKRPSLTASTP 223 (383)
Q Consensus 144 gfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~~~~~~~~~~~s~s~~~~g~~~~~~~~~~ 223 (383)
.|+...+.||+|+||++++..+|||.++||+|+++++|+||+|++.+++.+..... ..+.
T Consensus 166 ~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~--------------------~~g~ 225 (309)
T 3gdi_A 166 IFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQ--------------------AGGQ 225 (309)
T ss_dssp EEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHH--------------------TTTC
T ss_pred eEEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHh--------------------cCCc
Confidence 68999999999999999999999999999999999999999999888776643210 0122
Q ss_pred cee-EEEEEEEcCC
Q psy7682 224 NRT-FNIRLLISST 236 (383)
Q Consensus 224 ~rs-F~cRmk~~~~ 236 (383)
..+ +..||+++++
T Consensus 226 ~~~~~~yR~~~kdG 239 (309)
T 3gdi_A 226 PFDYSPIRFRTRNG 239 (309)
T ss_dssp CEEEEEEEEECTTS
T ss_pred eeeceEEEEEccCC
Confidence 345 6899999886
No 23
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.63 E-value=2.1e-08 Score=97.45 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=49.6
Q ss_pred cCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcC
Q psy7682 143 EGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 143 dgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~ 195 (383)
..|+...+.||+|+||++++..+|||.++||+|+++++|+||+|++.+.+.+.
T Consensus 174 ~~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~ 226 (317)
T 4dj3_A 174 RIFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQ 226 (317)
T ss_dssp CEEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHH
T ss_pred CceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999998887664
No 24
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.62 E-value=2.7e-08 Score=96.83 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=50.4
Q ss_pred hcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcC
Q psy7682 142 LEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 142 ldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~ 195 (383)
...|+...+.||+|+||++++..+|||.++||+|+++++|+||+|++.+++.+.
T Consensus 175 ~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~ 228 (320)
T 4dj2_A 175 KRIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHK 228 (320)
T ss_dssp GCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH
T ss_pred CceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHH
Confidence 466899999999999999999999999999999999999999999999887664
No 25
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=98.57 E-value=1.8e-08 Score=80.50 Aligned_cols=57 Identities=21% Similarity=0.358 Sum_probs=51.3
Q ss_pred HHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcC
Q psy7682 139 LEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 139 l~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~ 195 (383)
+++...+|++++.+|+|+|+|+++..+|||+++|++|+++.+++||+|...+...+.
T Consensus 9 ~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~ 65 (121)
T 2kdk_A 9 NVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHK 65 (121)
T ss_dssp CCCSSEEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHH
T ss_pred ccCCccEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999999999999999988776654
No 26
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.56 E-value=2.1e-08 Score=98.42 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=49.9
Q ss_pred hcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcC
Q psy7682 142 LEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 142 ldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~ 195 (383)
...|++..+.||+|+|+|+++..+|||.++||+|+++++|+||+|++.+.+.+.
T Consensus 153 ~~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~ 206 (339)
T 3rty_A 153 SPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYE 206 (339)
T ss_dssp CCEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHH
T ss_pred CceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999998876654
No 27
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=98.56 E-value=1.1e-07 Score=76.21 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=41.7
Q ss_pred CCceeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceecCCCC
Q psy7682 282 PIEQFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTCPNS 330 (383)
Q Consensus 282 ~~~~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~~~~ 330 (383)
+...|+..+++||+|+||++.+ ..++||.|+||+|+++++++ ||++
T Consensus 10 ~~~d~i~~~d~~g~i~~~n~~~--~~~~G~~~~el~g~~~~~~i-~p~d 55 (121)
T 3f1p_B 10 QPTRFISRHNIEGIFTFVDHRC--VATVGYQPQELLGKNIVEFC-HPED 55 (121)
T ss_dssp CCCEEEEEECTTSBEEEECTTH--HHHHSCCGGGTTTSBGGGGB-CTTT
T ss_pred CCCceEEEECCCceEEEECcch--hhhhCCChHHHcCCCHHHeE-CHHH
Confidence 4578999999999999999998 89999999999999999987 6776
No 28
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=98.52 E-value=7.4e-08 Score=76.72 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=56.6
Q ss_pred CceeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceecCCCCchhHHHHHHHHHHhhhhcccceeecccceecc
Q psy7682 283 IEQFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTCPNSPLTSTKLLLKALLLSICTDYALVQTDTCMYRS 362 (383)
Q Consensus 283 ~~~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~t~~yR~ 362 (383)
...|++++++||+|+||++.+ ..++||.|+||+|+++++++ ||++...... .+. .....++..+..||+
T Consensus 8 ~~~~i~~~d~~g~i~~~n~~~--~~~~Gy~~~el~g~~~~~~~-~p~d~~~~~~----~~~----~~~~~~~~~~~e~r~ 76 (117)
T 3f1p_A 8 SKTFLSEHSMDMKFTYCDDRI--TELIGYHPEELLGRSAYEFY-HALDSENMTK----SHQ----NLCTKGQVVSGQYRM 76 (117)
T ss_dssp GGEEEEEECTTCBEEEECTHH--HHHHCCCHHHHTTSBGGGGB-CGGGHHHHHH----HHH----HHHHHSEEECCCEEE
T ss_pred CccEEEEECCCceEEEECcCh--hhhhCCCHHHHcCCchhheE-CHHHHHHHHH----HHH----HHHhCCCeeeeEEEE
Confidence 368999999999999999998 89999999999999999887 5665222111 111 222334555556664
Q ss_pred cCCccccccCCcceEEEEee
Q psy7682 363 SPSCFGLQGASRTSLWQRIR 382 (383)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~ 382 (383)
. ..+++++|+..+
T Consensus 77 ~-------~~dG~~~w~~~~ 89 (117)
T 3f1p_A 77 L-------AKHGGYVWLETQ 89 (117)
T ss_dssp E-------CTTSSEEEEEEE
T ss_pred E-------ecCCCEEEEEEe
Confidence 4 444566777643
No 29
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.52 E-value=1.3e-07 Score=74.98 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=48.8
Q ss_pred hhhhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhc
Q psy7682 47 QETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109 (383)
Q Consensus 47 ~~~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~ 109 (383)
.++..|+..||+||+.+|..|.+|..+||.. ++ ..|+||++||+.|+.||+.+...
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~--~~-----~~K~sK~~iL~~A~~YI~~L~~~ 60 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPEL--EN-----NEKAPKVVILKKATAYILSVQAE 60 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGG--TT-----CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCC--CC-----CCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999982 21 36999999999999999987654
No 30
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.48 E-value=9.3e-08 Score=78.23 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=40.0
Q ss_pred CceeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceecCCCC
Q psy7682 283 IEQFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTCPNS 330 (383)
Q Consensus 283 ~~~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~~~~ 330 (383)
...|+..++.+|+|+||++.+ ..+|||.++||+|+++|+|+ ||+|
T Consensus 8 ~~d~i~v~d~~G~i~yvn~~~--~~~lGy~~~el~G~~~~~~i-hp~D 52 (111)
T 2vlg_A 8 KTDIHAVLASNGRIIYISANS--KLHLGYLQGEMIGSFLKTFL-HEED 52 (111)
T ss_dssp -CCEEEEECTTSBEEEECTTH--HHHHSCCHHHHTTSBGGGGB-CGGG
T ss_pred CCCEEEEEcCCCeEEEEChHH--HHHhCCCHHHHcCCcHHHeE-CHhH
Confidence 356788899999999999998 89999999999999999987 6666
No 31
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=98.33 E-value=6.2e-07 Score=70.28 Aligned_cols=62 Identities=11% Similarity=0.170 Sum_probs=54.3
Q ss_pred hhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCcc--ccccCCCChHHHHhhcCC
Q psy7682 135 GPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSV--YNLIHHGDHARFHNCLVP 196 (383)
Q Consensus 135 ~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~--~d~iHp~D~~~~~~~l~~ 196 (383)
.+.+++++.+.++.++.+|.++|+|+++..++||++++++|... .+++||+|.+.+.+.+..
T Consensus 6 ~~~l~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~ 69 (118)
T 3icy_A 6 LQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSK 69 (118)
T ss_dssp HHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999999999998754 899999999998877643
No 32
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=98.29 E-value=1.4e-06 Score=69.22 Aligned_cols=49 Identities=10% Similarity=0.239 Sum_probs=42.7
Q ss_pred cCCCCceeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceecCCCC
Q psy7682 279 LSAPIEQFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTCPNS 330 (383)
Q Consensus 279 i~~~~~~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~~~~ 330 (383)
+-.....++..++.+|+|+|+++.+ ..++||.++|++|+++++++ ||++
T Consensus 8 ~~~~~~~~i~~~d~~g~i~~~N~~~--~~~~G~~~~el~g~~~~~~~-~p~d 56 (121)
T 2kdk_A 8 INVKPTEFITRFAVNGKFVYVDQRA--TAILGYLPQELLGTSCYEYF-HQDD 56 (121)
T ss_dssp CCCCSSEEEEEECTTSBEEEECTHH--HHHTCCCTTTSBTSBTTTTB-CSSS
T ss_pred cccCCccEEEEECCCeeEEEEChhH--HHHHCCCHHHHcCCcHHHee-CHHH
Confidence 4445578999999999999999998 89999999999999998887 5666
No 33
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=98.29 E-value=1.7e-06 Score=69.41 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=49.0
Q ss_pred hhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHH
Q psy7682 135 GPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFH 191 (383)
Q Consensus 135 ~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~ 191 (383)
...+++++...|+++|.+|+|+|+|+++..++||+++|++|+++.++.++++.....
T Consensus 7 ~~~~~~~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~ 63 (120)
T 2gj3_A 7 FRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVY 63 (120)
T ss_dssp HHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHH
T ss_pred HHHHHHhCCCeEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHH
Confidence 345667777779999999999999999999999999999999999998887765443
No 34
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.29 E-value=9.7e-07 Score=68.57 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=47.1
Q ss_pred hhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhc
Q psy7682 49 TVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109 (383)
Q Consensus 49 ~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~ 109 (383)
+..|+..||+||+.+|..|..|+++||.. ++ ..|+.|++||+.|+.||+.+...
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~--~~-----~~k~sk~~iL~kA~~yI~~L~~~ 55 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLG--PD-----SSRHTTLSLLTKAKLHIKKLEDS 55 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCC--SS-----SCCCTTHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCC--CC-----CCCCCHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999972 22 47999999999999999987654
No 35
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=98.27 E-value=6.4e-07 Score=68.90 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=43.0
Q ss_pred hhhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhc
Q psy7682 48 ETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109 (383)
Q Consensus 48 ~~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~ 109 (383)
++..|+..||+||+.+|+.|.+|..+||.. .+ ....+.|..||+.|+.||+.++..
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~--~~----~~K~~sK~~IL~~AieYI~~Lq~~ 60 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMH--LK----SDKAQTKLLILQQAVQVILGLEQQ 60 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHH--HC----CCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCC--CC----ccccccHHHHHHHHHHHHHHHHHH
Confidence 456888899999999999999999999951 11 113348999999999999987754
No 36
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.25 E-value=1.6e-06 Score=65.19 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=47.6
Q ss_pred hhhhhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhc
Q psy7682 46 LQETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109 (383)
Q Consensus 46 ~~~~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~ 109 (383)
..++..++.-|++|+..+|..|.+|..+||.. + ..||+|..||++|+.||+.+...
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~--~------~~KlSKi~tLr~Ai~YI~~L~~~ 65 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSN--P------NQRLPKVEILRNAIRYIEGLQAL 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC--T------TSCCCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCC--C------CCCCCHHHHHHHHHHHHHHHHHH
Confidence 34566788889999999999999999999982 2 26999999999999999987643
No 37
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.16 E-value=3.7e-06 Score=61.68 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=46.1
Q ss_pred hhhhhhHHHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhc
Q psy7682 49 TVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109 (383)
Q Consensus 49 ~~~~~~~ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~ 109 (383)
+..++.-|++|+..+|..|+.|...||.. + ...||.|..||++|+.||+.+...
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~--~-----~~~klSKi~tLr~Ai~YI~~L~~~ 56 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCY--S-----KTQKLSKIETLRLAKNYIWALSEI 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSC--C-----SSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCC--C-----CcCcCCHHHHHHHHHHHHHHHHHH
Confidence 44567779999999999999999999982 2 247999999999999999987654
No 38
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.12 E-value=9.9e-07 Score=73.84 Aligned_cols=59 Identities=20% Similarity=0.486 Sum_probs=50.9
Q ss_pred hHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 136 PLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 136 ~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
..+++++..-|+++|.+|+|+|+|+++..+|||++++++|+++.++++|++...+...+
T Consensus 10 ~~i~~~~~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~ 68 (129)
T 3mfx_A 10 ELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLL 68 (129)
T ss_dssp HHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTT
T ss_pred HHHHhcCCceEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHH
Confidence 34566666668999999999999999999999999999999999999999876655444
No 39
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=98.11 E-value=1.2e-06 Score=71.27 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=50.6
Q ss_pred hhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhh
Q psy7682 135 GPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNC 193 (383)
Q Consensus 135 ~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~ 193 (383)
...+++++.+-|+++|.+|.|+|+|+++..++||+++|++|+++.++++|.+.......
T Consensus 18 ~~~l~~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~ 76 (130)
T 1d06_A 18 LRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGY 76 (130)
T ss_dssp HHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHH
T ss_pred HHHHHhhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHH
Confidence 34567777777899999999999999999999999999999999999998877654433
No 40
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=98.06 E-value=3.8e-06 Score=65.86 Aligned_cols=60 Identities=10% Similarity=0.019 Sum_probs=48.8
Q ss_pred hHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccC--CccccccCCCChHHHHhhcC
Q psy7682 136 PLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLG--KSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 136 ~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G--~s~~d~iHp~D~~~~~~~l~ 195 (383)
..+++++..-+++++.+|.++|+|+++..++||++.+++| ..+.+++||+|...+...+.
T Consensus 10 ~~~~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 71 (125)
T 3nja_A 10 HTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELD 71 (125)
T ss_dssp -------CCEEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHH
T ss_pred HHHHHhCCeeEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHH
Confidence 3456666777899999999999999999999999999999 78899999999998887764
No 41
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.04 E-value=3.7e-06 Score=66.60 Aligned_cols=51 Identities=14% Similarity=0.330 Sum_probs=44.6
Q ss_pred hcCcEEEEcCC-ccEEEeecccccccCcccccccCCccccccCCCChHHHHh
Q psy7682 142 LEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHN 192 (383)
Q Consensus 142 ldgfi~vvs~d-G~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~ 192 (383)
.+.-|+++|.+ |+|+|+|+++..+|||+++|++|+++.++++|.+......
T Consensus 7 ~~~~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~ 58 (114)
T 1ll8_A 7 FNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEA 58 (114)
T ss_dssp TTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHH
T ss_pred CCceEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHH
Confidence 34448889998 9999999999999999999999999999999988765443
No 42
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=98.02 E-value=7.4e-06 Score=63.16 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=47.9
Q ss_pred HHhhcCcEEEEcC---CccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 139 LEALEGFLFVVNP---DGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 139 l~aldgfi~vvs~---dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
++++..-+++++. +|+|+|+|+++..++||++++++|+++.+++||++...+...+
T Consensus 3 l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 61 (115)
T 4eet_B 3 PEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKI 61 (115)
T ss_dssp --CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHH
T ss_pred cccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHH
Confidence 4556666899999 9999999999999999999999999999999999877665554
No 43
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=98.02 E-value=2.4e-06 Score=67.71 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=44.7
Q ss_pred cEEEEc-CCccEEEeecccccccCcccccccCC-ccccccCCCChHHHHhhcCC
Q psy7682 145 FLFVVN-PDGYVNFCTENIKSFIRYSRQEVLGK-SVYNLIHHGDHARFHNCLVP 196 (383)
Q Consensus 145 fi~vvs-~dG~i~yvS~sv~~~LGy~~~el~G~-s~~d~iHp~D~~~~~~~l~~ 196 (383)
.++.++ .+|.++|+|+++..+|||++++++|. .+.+++||+|++.+.+.+..
T Consensus 5 giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~ 58 (115)
T 3h9w_A 5 IPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVK 58 (115)
T ss_dssp EEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHH
Confidence 367778 58999999999999999999999995 35789999999998877653
No 44
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=97.98 E-value=8.7e-06 Score=69.27 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=52.2
Q ss_pred hHHHHhhcCcEEEEcCC---ccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcC
Q psy7682 136 PLLLEALEGFLFVVNPD---GYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 136 ~lll~aldgfi~vvs~d---G~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~ 195 (383)
..+++++..-|+++|.+ |.|+|+|+++..++||++++++|+++.+++||++...+...+.
T Consensus 10 ~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~ 72 (176)
T 4hia_A 10 RAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIR 72 (176)
T ss_dssp HHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHH
T ss_pred HHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHH
Confidence 45667776678889998 9999999999999999999999999999999999877766553
No 45
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=97.95 E-value=1.5e-05 Score=66.12 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=52.1
Q ss_pred chhhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccC--CccccccCCCChHHHHhhcC
Q psy7682 133 VLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLG--KSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 133 ~~~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G--~s~~d~iHp~D~~~~~~~l~ 195 (383)
+...+++++....++..+.+|.++|+|+++..++||++.++.+ ..+.+++||+|.+.+...+.
T Consensus 9 ~rl~~~~~~~~~g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~ 73 (142)
T 3mr0_A 9 ERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALK 73 (142)
T ss_dssp CCHHHHHHHTTCEEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHH
T ss_pred HHHHHHHHhCCcEEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHH
Confidence 3445677777777999999999999999999999999999987 45789999999999887774
No 46
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=97.95 E-value=4.4e-06 Score=64.81 Aligned_cols=62 Identities=18% Similarity=0.129 Sum_probs=55.1
Q ss_pred hhhHHHHhhcCcEEEEcCC-ccEEEeecccccccCcccccccCCc--cccccCCCChHHHHhhcC
Q psy7682 134 LGPLLLEALEGFLFVVNPD-GYVNFCTENIKSFIRYSRQEVLGKS--VYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 134 ~~~lll~aldgfi~vvs~d-G~i~yvS~sv~~~LGy~~~el~G~s--~~d~iHp~D~~~~~~~l~ 195 (383)
....+++++...+++++.+ |.|+|+|+++..++||++++++|.. +.+++||+|...+...+.
T Consensus 12 ~~~~~~~~~~~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T 3eeh_A 12 RVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQ 76 (125)
T ss_dssp HHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHH
Confidence 4456778888889999998 9999999999999999999999988 899999999988877764
No 47
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=97.93 E-value=4.6e-06 Score=66.96 Aligned_cols=54 Identities=24% Similarity=0.169 Sum_probs=46.0
Q ss_pred hhhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCCh
Q psy7682 134 LGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDH 187 (383)
Q Consensus 134 ~~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~ 187 (383)
..+.+++++...|+++|.+|+|+|+|+++..++||+++|++|+++.++.++.+.
T Consensus 12 ~~~~l~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~ 65 (117)
T 2r78_A 12 AYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDS 65 (117)
T ss_dssp HHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTT
T ss_pred HHHHHHhcCCceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccch
Confidence 445667777777899999999999999999999999999999998887666553
No 48
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=97.92 E-value=1.8e-05 Score=63.16 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=48.2
Q ss_pred hhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccc--cCCccccccCCCChHHHHhhc
Q psy7682 135 GPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEV--LGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 135 ~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el--~G~s~~d~iHp~D~~~~~~~l 194 (383)
...+++++...|+++|.+|.|+|+|+++..++||+++|+ +|+++.+++| |...+...+
T Consensus 19 ~~~l~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~ 78 (126)
T 3bwl_A 19 LEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQL 78 (126)
T ss_dssp HHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHH
T ss_pred HHHHHhhCCcEEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHH
Confidence 445677777779999999999999999999999999999 6789999888 655555443
No 49
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=97.92 E-value=5.9e-06 Score=63.79 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=51.9
Q ss_pred hhhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 134 LGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 134 ~~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
....+++++...++++|.+|+|+|+|+++..++|+++++++|+++.+++ |+|...+...+
T Consensus 4 ~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~ 63 (114)
T 3luq_A 4 RLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVH 63 (114)
T ss_dssp HHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHH
T ss_pred HHHHHHhcCCceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHH
Confidence 3456778888889999999999999999999999999999999999987 88877665544
No 50
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=97.89 E-value=8.4e-06 Score=64.90 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=48.0
Q ss_pred HhhcCcEEEEcC---CccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 140 EALEGFLFVVNP---DGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 140 ~aldgfi~vvs~---dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
+++...|+++|. +|.|+|+|+++..++||++++++|+++.+++++++...+...+
T Consensus 4 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~ 61 (128)
T 3t50_A 4 EFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAI 61 (128)
T ss_dssp CCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHH
T ss_pred ccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHH
Confidence 345556889999 9999999999999999999999999999999998877766555
No 51
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=97.87 E-value=2.2e-05 Score=71.94 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=54.9
Q ss_pred chhhHHHHhhcCcEEEEcC---CccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcC
Q psy7682 133 VLGPLLLEALEGFLFVVNP---DGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 133 ~~~~lll~aldgfi~vvs~---dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~ 195 (383)
.....+++++..-|+++|. +|+|+|+|+++..++||+++|++|+++.+++||+|...+...+.
T Consensus 63 ~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~ 128 (258)
T 3p7n_A 63 QWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIR 128 (258)
T ss_dssp HHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHH
T ss_pred HHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHH
Confidence 3456677888888999999 99999999999999999999999999999999999877766553
No 52
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=97.85 E-value=3.2e-06 Score=66.71 Aligned_cols=58 Identities=17% Similarity=0.439 Sum_probs=52.1
Q ss_pred HHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcC
Q psy7682 138 LLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 138 ll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~ 195 (383)
+++++...++++|.+|.|+|+|+++..++||++++++|+++.++++++|...+...+.
T Consensus 4 l~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 61 (126)
T 3mjq_A 4 FLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILA 61 (126)
T ss_dssp TGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHH
T ss_pred HHhhCCceEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHH
Confidence 4566777799999999999999999999999999999999999999999987776654
No 53
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=97.83 E-value=6.2e-06 Score=65.77 Aligned_cols=48 Identities=19% Similarity=0.414 Sum_probs=42.7
Q ss_pred cEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHh
Q psy7682 145 FLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHN 192 (383)
Q Consensus 145 fi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~ 192 (383)
-|+++|.+|.|+|+|+++..++||+++|++|+++.+++++.+......
T Consensus 5 ~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~ 52 (119)
T 2vv6_A 5 AMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDS 52 (119)
T ss_dssp EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHH
T ss_pred eEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHH
Confidence 478899999999999999999999999999999999998887655443
No 54
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=97.76 E-value=1.1e-05 Score=62.89 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=44.7
Q ss_pred hhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCC
Q psy7682 135 GPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHG 185 (383)
Q Consensus 135 ~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~ 185 (383)
.+.+++++..-|+++|.+|+|+|+|+++..++||++++++|+++.+++++.
T Consensus 15 ~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~ 65 (118)
T 3olo_A 15 AHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDF 65 (118)
T ss_dssp HHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTG
T ss_pred HHHHHhcCCceEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhccccc
Confidence 446677777778999999999999999999999999999999999987443
No 55
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=97.74 E-value=1.1e-05 Score=65.71 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=44.8
Q ss_pred HHHhhcCcEEEEcCCc---cEEEeecccccccCcccccccCCccccccCCCChHHHHh
Q psy7682 138 LLEALEGFLFVVNPDG---YVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHN 192 (383)
Q Consensus 138 ll~aldgfi~vvs~dG---~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~ 192 (383)
+++++...|+++|.+| +|+|+|+++..++||+++|++|+++..+.||++......
T Consensus 4 ~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~ 61 (132)
T 2pr5_A 4 MLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVD 61 (132)
T ss_dssp --CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHH
T ss_pred HHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHH
Confidence 4566666788999876 999999999999999999999999988888876554433
No 56
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=97.74 E-value=2.9e-05 Score=61.45 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=39.5
Q ss_pred cCcEEEEcC---CccEEEeecccccccCcccccccCCccccccCCCChHHH
Q psy7682 143 EGFLFVVNP---DGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARF 190 (383)
Q Consensus 143 dgfi~vvs~---dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~ 190 (383)
+.-|+++|. +|+|+|+|+++..++||+++|++|++...+.||++....
T Consensus 3 ~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~ 53 (109)
T 1n9l_A 3 RHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKE 53 (109)
T ss_dssp SCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHH
T ss_pred ccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHH
Confidence 344677884 799999999999999999999999998777777764433
No 57
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=97.70 E-value=3.8e-05 Score=58.91 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=50.1
Q ss_pred hhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 135 GPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 135 ~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
...+++++...+++++.+|.|+|+|+++..++|+++.+++|+++..+.++++...+...+
T Consensus 9 ~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 68 (124)
T 3lyx_A 9 RAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEV 68 (124)
T ss_dssp HHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHH
T ss_pred HHHHHhhcCceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHH
Confidence 445667778889999999999999999999999999999999999777777766554443
No 58
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=97.67 E-value=8.2e-06 Score=64.53 Aligned_cols=56 Identities=5% Similarity=0.068 Sum_probs=43.9
Q ss_pred hhhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHH
Q psy7682 134 LGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHAR 189 (383)
Q Consensus 134 ~~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~ 189 (383)
....+++++...|+++|.+|+|+|+|+++..++||++++++|+++.++++++....
T Consensus 20 ~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 75 (125)
T 3fc7_A 20 KFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQ 75 (125)
T ss_dssp ------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHH
T ss_pred HHHHHHhcCCCeEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHH
Confidence 34456777888899999999999999999999999999999999999994433333
No 59
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.67 E-value=1.4e-05 Score=59.63 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=39.3
Q ss_pred HHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhh
Q psy7682 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIK 107 (383)
Q Consensus 56 ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~ 107 (383)
||+|+..+|..|++|+.+||.. +. ..||.|..|||+|++||+.+.
T Consensus 22 ER~Rm~~lN~aF~~LR~~VP~~--p~-----~kKLSKiEtLr~Ai~YI~~Lq 66 (68)
T 2lfh_A 22 PLSLLDDMNHCYSRLRELVPGV--PR-----GTQLSQVEILQRVIDYILDLQ 66 (68)
T ss_dssp CSCSSSHHHHHHHHHHHHCCCC--CT-----TCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCC--CC-----CCCccHHHHHHHHHHHHHHHH
Confidence 5778999999999999999993 22 479999999999999999765
No 60
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=97.65 E-value=5.3e-06 Score=66.70 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=47.4
Q ss_pred HHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 138 LLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 138 ll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
+++++..-|+++|.+|+|+|+|+++..++|+++++++|+++.+++++.+...+...+
T Consensus 17 il~~~~~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~ 73 (118)
T 3fg8_A 17 LYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALC 73 (118)
T ss_dssp SSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHH
T ss_pred HHhhCCceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHH
Confidence 445566668999999999999999999999999999999999998877655544433
No 61
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=97.60 E-value=1.3e-05 Score=67.83 Aligned_cols=54 Identities=9% Similarity=0.136 Sum_probs=44.8
Q ss_pred hhcCcEEEEcCCccEEEeecccccccCccc--ccccCCccccccCCCChH--HHHhhcC
Q psy7682 141 ALEGFLFVVNPDGYVNFCTENIKSFIRYSR--QEVLGKSVYNLIHHGDHA--RFHNCLV 195 (383)
Q Consensus 141 aldgfi~vvs~dG~i~yvS~sv~~~LGy~~--~el~G~s~~d~iHp~D~~--~~~~~l~ 195 (383)
..+.|+.-.+.||+|+||-.++. -.+|.+ +||+|+++|||+||+|.. .+++.+.
T Consensus 5 ~~e~F~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~ 62 (132)
T 1oj5_A 5 GVESFMTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQ 62 (132)
T ss_dssp -CCEEEEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHH
T ss_pred CceeeEEeecCCCcEEEEecccc-cccccccHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 45678999999999999999865 467777 999999999999999966 6666543
No 62
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=97.57 E-value=4.6e-05 Score=58.80 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=52.2
Q ss_pred hhHHHHhhcCcEEEEc---CCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 135 GPLLLEALEGFLFVVN---PDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 135 ~~lll~aldgfi~vvs---~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
...+++++...+++++ .+|.|+|+|+++..++|++..+++|+++.++++|.+...+...+
T Consensus 8 ~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 70 (130)
T 2z6d_A 8 LKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKI 70 (130)
T ss_dssp HHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHH
T ss_pred HHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHH
Confidence 4567788888899999 89999999999999999999999999999999998876655443
No 63
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=97.56 E-value=4.8e-05 Score=63.23 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=52.0
Q ss_pred hhhHHHHhhcCcEEEEcC---CccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 134 LGPLLLEALEGFLFVVNP---DGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 134 ~~~lll~aldgfi~vvs~---dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
....+++++...|+++|. +|.|+|+|+++..++||++++++|+++.+++||++...+...+
T Consensus 36 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~ 99 (166)
T 3ue6_A 36 SLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKI 99 (166)
T ss_dssp HHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHH
T ss_pred HHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHH
Confidence 445566777777888998 8999999999999999999999999999999999877666554
No 64
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.56 E-value=5.9e-05 Score=71.66 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=48.4
Q ss_pred HHhhcCcEEEEcC---CccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 139 LEALEGFLFVVNP---DGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 139 l~aldgfi~vvs~---dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
++++..-|+++|. +|+|+|+|+++..++||+++|++|+++.++.||++.......+
T Consensus 17 ~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~ 75 (332)
T 2wkq_A 17 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKI 75 (332)
T ss_dssp GGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHH
T ss_pred hhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHH
Confidence 4566667899999 9999999999999999999999999999999998866554443
No 65
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.55 E-value=2.3e-05 Score=61.56 Aligned_cols=53 Identities=13% Similarity=0.274 Sum_probs=47.1
Q ss_pred hhhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCC
Q psy7682 134 LGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGD 186 (383)
Q Consensus 134 ~~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D 186 (383)
+...+++++..-++++|.+|+|+|+++++..+||+++.+++|+++.+++++.+
T Consensus 8 l~~~il~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~ 60 (115)
T 3b33_A 8 LPSAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHAS 60 (115)
T ss_dssp HHHHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEE
T ss_pred cHHHHHhhcCceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccc
Confidence 44567888888899999999999999999999999999999999999887643
No 66
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=97.48 E-value=4.8e-05 Score=65.68 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=51.4
Q ss_pred hhhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 134 LGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 134 ~~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
+-+.++++++.-|+++|.+|+|+++|++...++|++.+|++|+++++++.+ +...+.+.+
T Consensus 23 ~l~~il~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l 82 (152)
T 3mxq_A 23 LLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKI 82 (152)
T ss_dssp HHHHHHHHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHH
Confidence 345677888777999999999999999999999999999999999998877 766665544
No 67
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=97.42 E-value=7.8e-05 Score=67.02 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=51.6
Q ss_pred HHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcC
Q psy7682 137 LLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 137 lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~ 195 (383)
.+++++...|+++|.+|+|+|+|+++..++||+++|++|+++..+.||.+...+...+.
T Consensus 115 ~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~ 173 (227)
T 3ewk_A 115 QAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQ 173 (227)
T ss_dssp HHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHH
T ss_pred HHHhcCcCeEEEEcCCCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHH
Confidence 45667777789999999999999999999999999999999999999988777666553
No 68
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=97.40 E-value=5.6e-05 Score=60.04 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=39.4
Q ss_pred hhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCC
Q psy7682 135 GPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHG 185 (383)
Q Consensus 135 ~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~ 185 (383)
...+++++..-|+ ++.+|+|+|+|+++..++||++++++|+++.++.+++
T Consensus 5 ~~~~~~~~~~~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~ 54 (120)
T 3mqq_A 5 YKTAFHLAPIGLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSS 54 (120)
T ss_dssp HHHHHHHCSSEEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSH
T ss_pred HHHHHhcCCceEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCCh
Confidence 3445565554454 5779999999999999999999999999988765543
No 69
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=97.37 E-value=7.3e-05 Score=59.21 Aligned_cols=57 Identities=23% Similarity=0.382 Sum_probs=49.7
Q ss_pred HHHhhcCcEEEEcC---CccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 138 LLEALEGFLFVVNP---DGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 138 ll~aldgfi~vvs~---dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
+++++...+++++. +|.|+|+|+++..++||++.+++|+++.+++||++...+...+
T Consensus 7 ~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 66 (146)
T 2v0u_A 7 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKI 66 (146)
T ss_dssp TGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHH
T ss_pred HHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHH
Confidence 34566777899999 9999999999999999999999999999999999976655544
No 70
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=97.36 E-value=3.9e-05 Score=63.01 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=40.3
Q ss_pred HhhcCcEEEEc---CCccEEEeecccccccCcccccccCCccccccCCCC
Q psy7682 140 EALEGFLFVVN---PDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGD 186 (383)
Q Consensus 140 ~aldgfi~vvs---~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D 186 (383)
++.++ |+++| .+|+|+|+|+++..++||+++|++|+++.+++||++
T Consensus 33 ~~~~~-i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~ 81 (149)
T 3d72_A 33 DTSVA-LILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDG 81 (149)
T ss_dssp CTTSC-EEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTS
T ss_pred cCCcc-EEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccc
Confidence 34455 66777 799999999999999999999999999999999884
No 71
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=97.35 E-value=0.00011 Score=60.61 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=52.1
Q ss_pred hhhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 134 LGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 134 ~~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
....+++++...+++++.+|.|+|+++++..++||+..+++|+++.+++++.+...+...+
T Consensus 41 ~~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 101 (167)
T 1v9y_A 41 IFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYI 101 (167)
T ss_dssp CHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHH
Confidence 3456777788889999999999999999999999999999999999999998766554443
No 72
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=97.27 E-value=9.4e-05 Score=61.31 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=55.1
Q ss_pred ccchhhHHHHhhcCcEEEEcCCc---cEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 131 NEVLGPLLLEALEGFLFVVNPDG---YVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 131 ~~~~~~lll~aldgfi~vvs~dG---~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
...+...+++++...|++++.+| .|+|+|+++..++||+.++++|+++.+++++.+...+...+
T Consensus 23 ~~~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 89 (162)
T 3sw1_A 23 NAQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARI 89 (162)
T ss_dssp CHHHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHH
T ss_pred hHHHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHH
Confidence 34456677888888899999999 99999999999999999999999999999998876655544
No 73
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=97.25 E-value=0.00011 Score=61.08 Aligned_cols=61 Identities=11% Similarity=0.142 Sum_probs=50.6
Q ss_pred cchhhHHHHhhcCcEEEEc-CCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 132 EVLGPLLLEALEGFLFVVN-PDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 132 ~~~~~lll~aldgfi~vvs-~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
++....+++++...+++++ .+|+|+|+|+++..++|++ +++|+++.+++++.+...+...+
T Consensus 16 ~~~~~~~~~~~~~~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~ 77 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEML 77 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHH
T ss_pred HHHHHHHHhcCCceEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHH
Confidence 3445567788888899999 9999999999999999999 99999999999988765544433
No 74
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.19 E-value=0.00043 Score=53.58 Aligned_cols=44 Identities=30% Similarity=0.432 Sum_probs=37.5
Q ss_pred HHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhh
Q psy7682 59 RREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQ 108 (383)
Q Consensus 59 RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~ 108 (383)
.|..+|..|.||..++|-. ++ ...+..|.+||+.||+|||.++.
T Consensus 3 ~R~nIN~~I~EL~~LiP~~--~~----~~~k~nKg~IL~ksvdYI~~Lq~ 46 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKS--ND----PDMRWNKGTILKASVDYIRKLQR 46 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCC--CC----TTCCCSHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCC--CC----cccCcchHHHHHHHHHHHHHHHH
Confidence 4889999999999999973 22 24699999999999999998764
No 75
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=97.18 E-value=9.7e-05 Score=57.23 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=46.5
Q ss_pred hhHHHHhhcCcEEEEcCCccEEEeecccccccCc---ccccccCCccccccCCCC
Q psy7682 135 GPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRY---SRQEVLGKSVYNLIHHGD 186 (383)
Q Consensus 135 ~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy---~~~el~G~s~~d~iHp~D 186 (383)
.+.+++++..-++++|.+|+|+|+++++..++|| ++.+++|+++.+++++.+
T Consensus 17 ~~~il~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 71 (118)
T 2w0n_A 17 RQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD 71 (118)
T ss_dssp HHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH
T ss_pred HHHHHhhccccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh
Confidence 4567788887799999999999999999999998 889999999999988765
No 76
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=97.16 E-value=0.00021 Score=52.18 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=37.2
Q ss_pred cEEEEcCCccEEEeecccccccCcccccccCCccccccCCCCh
Q psy7682 145 FLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDH 187 (383)
Q Consensus 145 fi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~ 187 (383)
-|+++|.+|+|+|+|+++..++||++++++|+++.++ |.+.
T Consensus 4 ~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~~ 44 (96)
T 3a0s_A 4 AIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--PDFE 44 (96)
T ss_dssp EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTCH
T ss_pred eEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cchH
Confidence 4788999999999999999999999999999999998 5443
No 77
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=97.15 E-value=0.00014 Score=61.11 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=46.6
Q ss_pred hhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCC
Q psy7682 135 GPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGD 186 (383)
Q Consensus 135 ~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D 186 (383)
...++++++-=|+++|.+|+|+|.+...+.+.||++++++|+++++.+.|+.
T Consensus 19 ~~~~ld~l~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~ 70 (125)
T 1nwz_A 19 DDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCT 70 (125)
T ss_dssp CHHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGG
T ss_pred HHHHHhccCceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchh
Confidence 3457888887799999999999999999999999999999999999877765
No 78
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.06 E-value=0.00043 Score=60.01 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=50.1
Q ss_pred hhhHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHH
Q psy7682 134 LGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARF 190 (383)
Q Consensus 134 ~~~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~ 190 (383)
..+.+++++..-++++|.+|+|+|+++++..+||++.++++|+++.+++++.+...+
T Consensus 81 ~l~~il~~~~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~~~~ 137 (190)
T 2jhe_A 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 (190)
T ss_dssp HHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCHHHH
T ss_pred HHHHHHHhCCCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCHHHH
Confidence 345678888888999999999999999999999999999999999999988765443
No 79
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=97.01 E-value=0.00015 Score=61.14 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=45.5
Q ss_pred hHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCC
Q psy7682 136 PLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGD 186 (383)
Q Consensus 136 ~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D 186 (383)
..++++++-=|+++|.+|+|+|.|...+.+.||++++++|+++++.+.|+.
T Consensus 25 ~~~ld~l~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~ 75 (129)
T 1mzu_A 25 TAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCT 75 (129)
T ss_dssp CTTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGG
T ss_pred HHHHhccCceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchh
Confidence 335777776699999999999999999999999999999999999877765
No 80
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=96.98 E-value=0.00067 Score=51.20 Aligned_cols=43 Identities=35% Similarity=0.486 Sum_probs=37.5
Q ss_pred hhHHHhHHHHhhHHHHHHhHhhhhhhhcccccccCCCchhhhhhhhhhhhhH
Q psy7682 4 LNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLN 55 (383)
Q Consensus 4 ~~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 55 (383)
..|||||+.-|.+|.||+.|++++ ..|.||+.||+.+++.++.
T Consensus 14 ~iErrRRd~IN~~i~eL~~LvP~~---------~~K~dK~sIL~~aI~yik~ 56 (71)
T 4h10_B 14 KSEKKRRDQFNVLIKELGSMLPGN---------ARKMDKSTVLQKSIDFLRK 56 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSC---------CSCCCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHhCCCC---------CCCCcHHHHHHHHHHHHHH
Confidence 469999999999999999999853 2589999999999988753
No 81
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=96.94 E-value=0.00039 Score=55.86 Aligned_cols=48 Identities=6% Similarity=0.258 Sum_probs=41.7
Q ss_pred hHHHHhhcCcEEEEcCCccEEEeecccccccC------------cccccccCCccccccC
Q psy7682 136 PLLLEALEGFLFVVNPDGYVNFCTENIKSFIR------------YSRQEVLGKSVYNLIH 183 (383)
Q Consensus 136 ~lll~aldgfi~vvs~dG~i~yvS~sv~~~LG------------y~~~el~G~s~~d~iH 183 (383)
..+++++..-|+++|.+|+|+|+++++..+|| |++++++|+++.++.+
T Consensus 8 ~~il~~~~~gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~ 67 (121)
T 4hi4_A 8 ASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 67 (121)
T ss_dssp HHHHTTSSSEEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCS
T ss_pred HHHHhcCCccEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcC
Confidence 34667776679999999999999999999996 8999999999988764
No 82
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=96.93 E-value=0.0012 Score=51.56 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=43.1
Q ss_pred hHHHHh---hcCcEEEEcC---CccEEEeecccccccCcccccccCCcc-cc-ccCCCChHHHH
Q psy7682 136 PLLLEA---LEGFLFVVNP---DGYVNFCTENIKSFIRYSRQEVLGKSV-YN-LIHHGDHARFH 191 (383)
Q Consensus 136 ~lll~a---ldgfi~vvs~---dG~i~yvS~sv~~~LGy~~~el~G~s~-~d-~iHp~D~~~~~ 191 (383)
+.+++. +..-+++++. +|.|+|+|+++..++||+.++++|+++ .+ +.+|++...+.
T Consensus 19 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~ 82 (138)
T 2l0w_A 19 DTIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAA 82 (138)
T ss_dssp HHHHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHH
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHH
Confidence 444444 6666888999 999999999999999999999999994 55 45555544433
No 83
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=96.92 E-value=0.00029 Score=61.03 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=47.6
Q ss_pred chhhHHHHhhcCcEEEEc-CCccEEEeecccccccCcccccccCCccccccCCCChHH
Q psy7682 133 VLGPLLLEALEGFLFVVN-PDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHAR 189 (383)
Q Consensus 133 ~~~~lll~aldgfi~vvs-~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~ 189 (383)
+....+++++...++++| .+|+|+|+|+++..++||+ +++|+++.+++++.+...
T Consensus 37 ~~l~~l~~~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~ 92 (185)
T 3kx0_X 37 EDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQ 92 (185)
T ss_dssp HHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSS
T ss_pred HHHHHHHhcCCceEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhh
Confidence 344567788888899999 9999999999999999999 999999999998877543
No 84
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=96.80 E-value=0.00059 Score=66.65 Aligned_cols=56 Identities=21% Similarity=0.383 Sum_probs=50.7
Q ss_pred hcCcEEEEcC-CccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcCCC
Q psy7682 142 LEGFLFVVNP-DGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPS 197 (383)
Q Consensus 142 ldgfi~vvs~-dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~~~ 197 (383)
.-|+++|++. +++|+++|+|+..+||+++++++|+++.++++|++...+++.+...
T Consensus 41 p~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l~~~l~~~ 97 (337)
T 2ool_A 41 PHGYLFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHALHGG 97 (337)
T ss_dssp TTSEEEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHHHHCC-
T ss_pred CCEEEEEEECCCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHHHHHHHHhcC
Confidence 4688999997 5999999999999999999999999999999999999999888543
No 85
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=96.77 E-value=0.0016 Score=51.87 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=40.2
Q ss_pred HHHHHHhhhHhHHHHHhhcccccccccccccCCCCChhhhhHHHHHHHHhhhhcc
Q psy7682 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE 110 (383)
Q Consensus 56 ek~RR~~~n~~i~eL~~llP~~~~~~~~~~~~~klDK~siLr~ai~~lr~~~~~~ 110 (383)
++.|=..+|..|+.|+..||.. +. ..||.|..+||+|+.||+.+...-
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~--p~-----~kKLSKIETLRlAi~YI~~Lq~~L 80 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSI--PQ-----NKKVSKMEILQHVIDYILDLQIAL 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTS--CS-----SSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCC--CC-----CCcccHHHHHHHHHHHHHHHHHHH
Confidence 4567778999999999999983 22 479999999999999999887553
No 86
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=96.63 E-value=0.0016 Score=55.68 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=43.8
Q ss_pred hhhHHHHhhcCcEEEEcCCccEEEeecc---cccccCcccccccCCccccccCCCC
Q psy7682 134 LGPLLLEALEGFLFVVNPDGYVNFCTEN---IKSFIRYSRQEVLGKSVYNLIHHGD 186 (383)
Q Consensus 134 ~~~lll~aldgfi~vvs~dG~i~yvS~s---v~~~LGy~~~el~G~s~~d~iHp~D 186 (383)
.-..+|+++..=|+++|.+|+|+|+|++ ...++| ...+++|+++.++ ||..
T Consensus 20 ~l~~IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~-~~~~ 73 (151)
T 2qkp_A 20 QANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELC-HPPK 73 (151)
T ss_dssp HHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGS-SCHH
T ss_pred HHHHHHHhCCCceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHh-CCHH
Confidence 3456788888889999999999999999 999999 6678999999985 5633
No 87
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.53 E-value=0.00041 Score=65.94 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=47.9
Q ss_pred hHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHH
Q psy7682 136 PLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARF 190 (383)
Q Consensus 136 ~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~ 190 (383)
+.+++++..-|+++|.+|+|+|+|+++..++||++++++|+++.++.++++....
T Consensus 11 ~~i~~~~~~~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~~~~~~ 65 (349)
T 3a0r_A 11 ESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSV 65 (349)
T ss_dssp CSSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTTHHHHH
T ss_pred HHHHhhhcCeEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChhHHHHH
Confidence 3456777778999999999999999999999999999999999999777765444
No 88
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=96.51 E-value=0.0017 Score=49.32 Aligned_cols=45 Identities=36% Similarity=0.575 Sum_probs=38.6
Q ss_pred chhHHHhHHHHhhHHHHHHhHhhhhhhhcccccccCCCchhhhhhhhhhhh
Q psy7682 3 CLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQC 53 (383)
Q Consensus 3 ~~~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~k~~~~~~~~~~~~~~ 53 (383)
...|||||+..|.+++||+.|+..+. ....|-||..||+.+++..
T Consensus 14 ~~~ERrRR~rIN~~l~eL~~LvP~~~------~~~~KldKasIL~~tV~yl 58 (73)
T 4h10_A 14 SQIEKRRRDKMNSFIDELASLVPTCN------AMSRKLDKLTVLRMAVQHM 58 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHH------TCSSCCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHccccc------cccccccHHHHHHHHHHHH
Confidence 46799999999999999999999861 2347899999999998766
No 89
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=96.40 E-value=0.0022 Score=50.71 Aligned_cols=38 Identities=18% Similarity=0.071 Sum_probs=33.2
Q ss_pred eEEEeCCCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 286 FTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 286 F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
-+.-.+.+|+|+|+++.. ..++||.++||+|+++.+++
T Consensus 17 ~i~~~d~~g~i~~~N~a~--~~~~G~~~~elig~~~~~l~ 54 (120)
T 2gj3_A 17 AISITDLKANILYANRAF--RTITGYGSEEVLGKNESILS 54 (120)
T ss_dssp EEEEECTTCBEEEECHHH--HHHHCCCTTGGGGCBGGGGC
T ss_pred eEEEECCCCCEEeehHHH--HHHHCcCHHHHcCCCHHHcC
Confidence 345568899999999998 89999999999999988775
No 90
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=96.37 E-value=0.0017 Score=48.18 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=33.6
Q ss_pred EEEEcC---CccEEEeecccccccCcccccccCCc-cccccCCCC
Q psy7682 146 LFVVNP---DGYVNFCTENIKSFIRYSRQEVLGKS-VYNLIHHGD 186 (383)
Q Consensus 146 i~vvs~---dG~i~yvS~sv~~~LGy~~~el~G~s-~~d~iHp~D 186 (383)
+++++. +|.|+|+|+++..++||++++++|++ +.+++++.+
T Consensus 4 i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 48 (110)
T 1byw_A 4 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPC 48 (110)
T ss_dssp EEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTT
T ss_pred EEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCc
Confidence 566675 59999999999999999999999999 466555443
No 91
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=96.35 E-value=0.0018 Score=59.11 Aligned_cols=48 Identities=6% Similarity=0.261 Sum_probs=41.6
Q ss_pred hHHHHhhcCcEEEEcCCccEEEeeccccccc------------CcccccccCCccccccC
Q psy7682 136 PLLLEALEGFLFVVNPDGYVNFCTENIKSFI------------RYSRQEVLGKSVYNLIH 183 (383)
Q Consensus 136 ~lll~aldgfi~vvs~dG~i~yvS~sv~~~L------------Gy~~~el~G~s~~d~iH 183 (383)
..+++++..-|+++|.+|+|+|+++++..+| ||++++++|+++.+|+.
T Consensus 25 ~~iLd~~~~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~ 84 (233)
T 3vol_A 25 KSALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 84 (233)
T ss_dssp HHHHTTSSSEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSS
T ss_pred HHHHhcCCCcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcC
Confidence 3456776666899999999999999999998 89999999999988764
No 92
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=96.21 E-value=0.0063 Score=47.42 Aligned_cols=40 Identities=8% Similarity=0.105 Sum_probs=34.5
Q ss_pred eeEEEeCCC-CcEEEEcCCCCccccCCcccccccCCCccceec
Q psy7682 285 QFTMKLDRS-GTIIGMDTSGVSQTHTQYLNKAVACKTSATVWT 326 (383)
Q Consensus 285 ~F~tRHsld-gkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~ 326 (383)
.-+.-.+.+ |+|+++++.+ ..++||.++||+|+++.++++
T Consensus 9 ~~i~~~d~~~g~I~~~N~aa--~~l~G~~~~el~g~~~~~l~~ 49 (114)
T 1ll8_A 9 KAIFTVDAKTTEILVANDKA--CGLLGYSSQDLIGQKLTQFFL 49 (114)
T ss_dssp CEEEEEETTTCBEEEECTTH--HHHHTCCTTTTTTSBGGGGSS
T ss_pred ceEEEEECCCCeEEEehHHH--HHHhCCCHHHHcCCCHHHhcC
Confidence 344556788 9999999998 899999999999999998873
No 93
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=96.18 E-value=0.0016 Score=51.30 Aligned_cols=33 Identities=6% Similarity=0.052 Sum_probs=29.7
Q ss_pred CCCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 291 DRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 291 sldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
+.+|+|++|++.. ..++||.++||+|+++.+++
T Consensus 19 ~~~g~i~~~N~a~--~~l~G~~~~el~g~~~~~~~ 51 (120)
T 3mqq_A 19 SRDRVIEDCNDEL--AAIFRCARADLIGRSFEVLY 51 (120)
T ss_dssp EETTEEEEECHHH--HHHTTSCHHHHTTCBGGGGS
T ss_pred ecCCEEHHHHHHH--HHHhCcCHHHhCCCchhhcc
Confidence 4589999999998 89999999999999987765
No 94
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=96.11 E-value=0.0027 Score=50.96 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=32.5
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
+.-.+.+|+|+++++.+ ..++||.++||+|+++.+++
T Consensus 29 i~~~d~~g~i~~~N~a~--~~l~Gy~~~eliG~~~~~l~ 65 (130)
T 1d06_A 29 TVVSATDGTIVSFNAAA--VRQFGYAEEEVIGQNLRILM 65 (130)
T ss_dssp EEEEETTSBEEEECHHH--HHHHCCCHHHHTTSBGGGGS
T ss_pred EEEECCCCeEEEEcHHH--HHHHCCCHHHHcCCcHHHHC
Confidence 34457899999999998 89999999999999988776
No 95
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=96.03 E-value=0.0042 Score=47.77 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=32.3
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccccCCCc--cceecCCCC
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTS--ATVWTCPNS 330 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~--yd~~~~~~~ 330 (383)
+...+.++.++++++.. ..++||.+++++|... .+++ ||++
T Consensus 17 i~~~d~~~~~~~~n~~~--~~~~G~~~~~~~~~~~~~~~~i-~p~d 59 (118)
T 3icy_A 17 IYHLDVSGQATIRFRPP--AFLKTLVSEHAGTTRLNTLSMI-HHDD 59 (118)
T ss_dssp CEEECTTSCEEECCCCC--GGGGGGEEEETTEEEEGGGGGB-CGGG
T ss_pred EEEEEcCCCceEEechh--HhhcCCCHHHccCChhHHHHHc-CHHH
Confidence 35568899999999998 8999999999988753 4454 4554
No 96
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=95.97 E-value=0.0029 Score=49.59 Aligned_cols=32 Identities=9% Similarity=-0.057 Sum_probs=28.3
Q ss_pred CCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 292 RSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 292 ldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
.+|+|+|+++.. ..++||.++|++|++...+.
T Consensus 14 ~~g~i~~~N~a~--~~l~Gy~~~e~~G~~~~~l~ 45 (109)
T 1n9l_A 14 PDCPLVYASEGF--YAMTGYGPDEVLGHNCRFLQ 45 (109)
T ss_dssp TTCCEEEECHHH--HHHHCCCHHHHTTSCGGGGC
T ss_pred CCCeEEEEchHH--HHHHCcCHHHHcCCCchhcC
Confidence 689999999998 89999999999999975554
No 97
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=95.92 E-value=0.0052 Score=64.72 Aligned_cols=56 Identities=5% Similarity=0.078 Sum_probs=49.0
Q ss_pred HhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcC
Q psy7682 140 EALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLV 195 (383)
Q Consensus 140 ~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~ 195 (383)
++...-|++++.+|+|+|+|+++..++||+.+|++|++.++.+||+|.+.++..+.
T Consensus 525 e~a~~~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~ 580 (635)
T 4eho_A 525 HASMQPVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAE 580 (635)
T ss_dssp HHCSSCCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHH
T ss_pred HhCCCcEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHH
Confidence 33344488899999999999999999999999999999999999999988876553
No 98
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=95.89 E-value=0.0039 Score=49.07 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=31.8
Q ss_pred EEeCCCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 288 MKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 288 tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
.-.+.+|+|+++++.+ ..++||.++||+|+++.+++
T Consensus 7 ~~~d~~g~i~~~N~a~--~~l~G~~~~el~G~~~~~l~ 42 (119)
T 2vv6_A 7 IVIDGHGIIQLFSTAA--ERLFGWSELEAIGQNVNILM 42 (119)
T ss_dssp EEEETTSBEEEECHHH--HHHHCCCHHHHTTSBGGGGS
T ss_pred EEECCCCeEEEEhHHH--HHHhCCCHHHHcCCCHHHhC
Confidence 3457899999999998 89999999999999987765
No 99
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=95.82 E-value=0.0099 Score=47.66 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=29.2
Q ss_pred EeCCCC---cEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 289 KLDRSG---TIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 289 RHsldg---kf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
-.+.+| +|+||++.. ..++||.++|++|+++..++
T Consensus 14 ~~d~~g~~~~i~~~N~a~--~~~~G~~~~el~g~~~~~l~ 51 (132)
T 2pr5_A 14 ITDPALEDNPIVYVNQGF--VQMTGYETEEILGKNCRFLQ 51 (132)
T ss_dssp EECTTSTTCCEEEECHHH--HHHHSCCHHHHTTSCGGGGC
T ss_pred EEeCCCCCCcEEEECHHH--HHHhCcCHHHHcCCChhhhC
Confidence 345544 999999998 89999999999999986554
No 100
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=95.71 E-value=0.0064 Score=46.07 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=31.1
Q ss_pred EeCC---CCcEEEEcCCCCccccCCcccccccCCCccceec
Q psy7682 289 KLDR---SGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWT 326 (383)
Q Consensus 289 RHsl---dgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~ 326 (383)
-.+. +|+++++++.. ..++||.++|++|+++.++++
T Consensus 12 ~~d~~~~~g~i~~~N~~~--~~~~g~~~~~~~g~~~~~~~~ 50 (115)
T 4eet_B 12 ITDPRLPDNPIIFASDGF--LELTEYSREEILGRNARFLQG 50 (115)
T ss_dssp EECTTSTTCCEEEECHHH--HHHHCCCHHHHTTSCGGGGCC
T ss_pred EEcCCCCCCcEEEEcHHH--HHHHCcCHHHHhCCCHHHhcC
Confidence 3456 99999999998 899999999999999877663
No 101
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=95.67 E-value=0.0054 Score=50.69 Aligned_cols=38 Identities=8% Similarity=0.056 Sum_probs=33.7
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceec
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWT 326 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~ 326 (383)
+.-.+.+|+|+++++.+ ..++||.++||+|+++.+++.
T Consensus 20 i~~~D~~g~I~~~N~aa--~~l~G~~~~el~G~~~~~l~~ 57 (129)
T 3mfx_A 20 MILVNANGFIRSCNQRS--AELLDCPQVSLKGQDWRNFLT 57 (129)
T ss_dssp EEEEETTSBEEEECHHH--HHHTTSCHHHHTTSBGGGGBC
T ss_pred EEEECCCCEEEeEhHHH--HHHHCcCHHHHcCCcHHHHcC
Confidence 44467899999999998 899999999999999999874
No 102
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=95.58 E-value=0.011 Score=46.66 Aligned_cols=37 Identities=8% Similarity=0.093 Sum_probs=31.9
Q ss_pred eEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccce
Q psy7682 286 FTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATV 324 (383)
Q Consensus 286 F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~ 324 (383)
.+.-.+.+|+|++|++.+ ..++||.++||+|+++.++
T Consensus 23 ~i~~~d~~g~i~~vN~a~--~~l~Gy~~~el~g~~~~~~ 59 (117)
T 2r78_A 23 GIFIMDAEGHYLDVNPAI--CSAIGYTRDEFLALDWGVL 59 (117)
T ss_dssp EEEEECTTSBEEEECHHH--HHHHCCCHHHHTTCBTTTT
T ss_pred eEEEECCCCCEEEecHHH--HHHHCcCHHHHcCCCHHHh
Confidence 345568999999999998 7999999999999987655
No 103
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=95.55 E-value=0.0072 Score=57.00 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=32.7
Q ss_pred EEEeCC---CCcEEEEcCCCCccccCCcccccccCCCccceec
Q psy7682 287 TMKLDR---SGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWT 326 (383)
Q Consensus 287 ~tRHsl---dgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~ 326 (383)
+.-.+. +|+|+|+++.+ ..++||.++|++|+++.++++
T Consensus 24 i~~~D~~~~~g~i~~~N~a~--~~l~G~~~~el~G~~~~~l~~ 64 (332)
T 2wkq_A 24 FVITDPRLPDNPIIFASDSF--LQLTEYSREEILGRNARFLQG 64 (332)
T ss_dssp EEEECTTSTTCCEEEECHHH--HHHHCCCHHHHTTSCGGGGCC
T ss_pred EEEecCCCCCCCEEEeehHH--HHHhCCCHHHHcCCCchhhcC
Confidence 334467 99999999998 899999999999999987763
No 104
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=95.48 E-value=0.0056 Score=47.02 Aligned_cols=37 Identities=8% Similarity=0.068 Sum_probs=32.8
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
+.-.+.+|+|+++++.+ ..++||.++||+|+++.+++
T Consensus 26 i~~~d~~g~i~~~N~~~--~~l~G~~~~el~g~~~~~~~ 62 (118)
T 3olo_A 26 SFCLGDNWQFLYVNDAT--CRMTEYSREQLLSMNLQDID 62 (118)
T ss_dssp EEEECTTSBEEEECHHH--HHHHCCCHHHHTTCBGGGTB
T ss_pred EEEECCCCcEEEEHHHH--HHHHCCCHHHHhCCChhhcc
Confidence 34457899999999998 89999999999999998876
No 105
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=95.47 E-value=0.0067 Score=47.23 Aligned_cols=26 Identities=0% Similarity=-0.141 Sum_probs=23.8
Q ss_pred CCCcEEEEcCCCCccccCCcccccccCC
Q psy7682 292 RSGTIIGMDTSGVSQTHTQYLNKAVACK 319 (383)
Q Consensus 292 ldgkf~~vD~r~l~~~ilGY~p~eLiG~ 319 (383)
.+|+|+|+++.+ ..++||.+++++|.
T Consensus 12 ~~~~~~~~n~~~--~~l~G~~~~e~~~~ 37 (115)
T 3h9w_A 12 QTMAFEYIGPQI--EALLGWPQGSWKSV 37 (115)
T ss_dssp TTTEEEEECTHH--HHHHCSCGGGCCBH
T ss_pred CCCcEEEEChhH--HHHhCCChHHccCH
Confidence 688999999998 89999999999993
No 106
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=95.41 E-value=0.035 Score=42.80 Aligned_cols=63 Identities=22% Similarity=0.240 Sum_probs=53.4
Q ss_pred hhHHHhHHHHhhHHHHHHhHhhhhhhhcccccccCCCchhhhhhhhhhhhhHHHHHHHhhhHhHHHHHhhcc
Q psy7682 4 LNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQENNYIEELAELIS 75 (383)
Q Consensus 4 ~~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ek~RR~~~n~~i~eL~~llP 75 (383)
..|++||+.-|..+.+|..+++.. ..|.||..||..+++.+..=+...+.+.+...+|...+-
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~---------~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGT---------EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCS---------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCC---------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999853 368999999999999998877777777777777776653
No 107
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=95.38 E-value=0.0095 Score=46.63 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=32.2
Q ss_pred EEeCC---CCcEEEEcCCCCccccCCcccccccCCCccceecC
Q psy7682 288 MKLDR---SGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTC 327 (383)
Q Consensus 288 tRHsl---dgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~ 327 (383)
.-.+. +|+++++++.. ..++||.+++++|+++.++++.
T Consensus 11 ~~~d~~~~~g~i~~~N~~~--~~l~g~~~~e~~g~~~~~~~~~ 51 (128)
T 3t50_A 11 LITNPHLPDNPIVFANPAF--LKLTGYEADEVMGRNCRFLQGH 51 (128)
T ss_dssp EEECTTSTTCCEEEECHHH--HHHHCCCHHHHTTSCGGGGCCT
T ss_pred EEecCCCCCCcEEEEcHHH--HHHhCcCHHHHcCCCHhhhcCC
Confidence 33456 89999999998 8999999999999998877643
No 108
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=95.30 E-value=0.0081 Score=58.58 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=49.8
Q ss_pred hcCcEEEEcC-CccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcCCC
Q psy7682 142 LEGFLFVVNP-DGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPS 197 (383)
Q Consensus 142 ldgfi~vvs~-dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~~~ 197 (383)
.-|++++++. +++|+++|+|+..+||.++++++|+++-+++-+ ....+++.+...
T Consensus 51 phG~LL~l~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~-~~~~l~~~l~~~ 106 (343)
T 3s7o_A 51 PHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE-QWPALQAALPPG 106 (343)
T ss_dssp TTSEEEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT-THHHHHHHSCTT
T ss_pred CCeEEEEEECCCCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH-HHHHHHHHhccc
Confidence 4689999997 899999999999999999999999999999988 888888887643
No 109
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=95.15 E-value=0.0081 Score=48.75 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=29.6
Q ss_pred CCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 292 RSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 292 ldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
.+|+|+++++.. ..++||.++|++|+++.+++
T Consensus 46 ~~g~i~~~N~a~--~~l~G~~~~el~g~~~~~l~ 77 (149)
T 3d72_A 46 KDTPIVYASEAF--LYMTGYSNAEVLGRNCRFLQ 77 (149)
T ss_dssp TTCCEEEECHHH--HHHHCCCHHHHTTSCGGGGG
T ss_pred CCCcEEEECHHH--HHHHCcCHHHHcCCChhHhC
Confidence 699999999998 89999999999999987776
No 110
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=95.14 E-value=0.022 Score=55.80 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=43.2
Q ss_pred hHHHHhhcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCCh
Q psy7682 136 PLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDH 187 (383)
Q Consensus 136 ~lll~aldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~ 187 (383)
..+++++..=|+++|.+|+|+|+|++ ..++ +.+.+++|+++.+++.+...
T Consensus 242 ~~IL~~l~dgIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~~ 291 (369)
T 3cax_A 242 KAIFEALPVDVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKSV 291 (369)
T ss_dssp HHHHHHSSSEEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGGH
T ss_pred HHHHHhCCCcEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhhH
Confidence 46788888779999999999999999 9999 99999999999987554433
No 111
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=95.10 E-value=0.016 Score=48.49 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=30.4
Q ss_pred eCCC---CcEEEEcCCCCccccCCcccccccCCCccceec
Q psy7682 290 LDRS---GTIIGMDTSGVSQTHTQYLNKAVACKTSATVWT 326 (383)
Q Consensus 290 Hsld---gkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~ 326 (383)
.+.+ |+|+++++.. ..++||.++|++|+++.++++
T Consensus 23 ~d~~~~~g~i~~~N~a~--~~~~G~~~~e~~g~~~~~~~~ 60 (176)
T 4hia_A 23 VDMSLPEQPVVLANPPF--LRMTGYTEGQILGFNCRFLQR 60 (176)
T ss_dssp EETTSTTCCEEEECHHH--HHHHTCCHHHHTTSCGGGGCC
T ss_pred EecCCCCCcEEEECHHH--HHHHCcCHHHHcCCCcceeeC
Confidence 3455 9999999998 899999999999999877763
No 112
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=94.96 E-value=0.02 Score=43.21 Aligned_cols=40 Identities=8% Similarity=0.095 Sum_probs=34.6
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceecCCCC
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTCPNS 330 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~~~~ 330 (383)
+.-.+.+|+++++++.. ..++||.+++++|+++++++ |++
T Consensus 16 i~~~d~~g~i~~~N~~~--~~~~g~~~~~~~g~~~~~~~--~~~ 55 (114)
T 3luq_A 16 LAMFDREMRYLAVSRRW--REDYGLGDGDILGMSHYDIF--PEI 55 (114)
T ss_dssp EEEEETTCBEEEECHHH--HHHTTCCSSCCTTCBHHHHC--TTC
T ss_pred EEEEcCCcEEEEECHHH--HHHHCCCHHHHcCCcHHHHC--Ccc
Confidence 44457899999999998 89999999999999999986 454
No 113
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=94.95 E-value=0.0065 Score=58.93 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=49.8
Q ss_pred hcCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhcCC
Q psy7682 142 LEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVP 196 (383)
Q Consensus 142 ldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l~~ 196 (383)
.-|++++++.+++|+++|+|+..+||.++++++|+++-+++-+.....+++.+..
T Consensus 28 phG~Ll~~~~~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~~~~~l~~~l~~ 82 (327)
T 4e04_A 28 PHGLLLALAADMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETHNRLTIALAE 82 (327)
T ss_dssp TTSEEEEECTTCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHHHHHHHHHHHHS
T ss_pred CCeEEEEEcCCCeEEEEcccHHHHhCCChHhhcCCCHHHHcCHHHHHHHHHHhhc
Confidence 4689999998899999999999999999999999999999988888888877754
No 114
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=94.75 E-value=0.041 Score=44.80 Aligned_cols=41 Identities=5% Similarity=0.021 Sum_probs=30.3
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccccCC--CccceecCCCC
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACK--TSATVWTCPNS 330 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~--S~yd~~~~~~~ 330 (383)
+...++++..+++++.. ..++||.+.++.+. ...+++ ||+|
T Consensus 22 ~w~~d~~~~~~~~s~~~--~~~~G~~~~~~~~~~~~~~~~i-hpdD 64 (142)
T 3mr0_A 22 LWDWNPKTGAMYLSPHF--KKIMGYEDHELPDEITGHRESI-HPDD 64 (142)
T ss_dssp EEEECTTTCCEEECHHH--HHHTTCCGGGSCSEEC---CCB-CTTT
T ss_pred EEEEEcCCCeEEECHHH--HHHhCCCccccCCCHHHHHhhc-CHHH
Confidence 44567888999999998 89999999999874 334444 6666
No 115
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=94.67 E-value=0.04 Score=49.78 Aligned_cols=40 Identities=10% Similarity=0.093 Sum_probs=33.8
Q ss_pred eeEEEeCC---CCcEEEEcCCCCccccCCcccccccCCCccceec
Q psy7682 285 QFTMKLDR---SGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWT 326 (383)
Q Consensus 285 ~F~tRHsl---dgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~ 326 (383)
.-+.-.+. ||+|+||++.. ..++||.++|++|+++.++++
T Consensus 74 ~~i~~~d~~~~~g~i~~~N~a~--~~l~G~~~~el~g~~~~~l~~ 116 (258)
T 3p7n_A 74 IASVVSDPRLADNPLIAINQAF--TDLTGYSEEECVGRNCRFLAG 116 (258)
T ss_dssp SEEEEECTTSTTCCEEEECHHH--HHHHCCCGGGTTTSCGGGGCC
T ss_pred ccEEEEcCCCCCCcEEEEhHHH--HHHcCCCHHHHCCCChhhccC
Confidence 33455678 89999999998 899999999999999877763
No 116
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=94.62 E-value=0.017 Score=47.34 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=31.5
Q ss_pred EEeCC---CCcEEEEcCCCCccccCCcccccccCCCccceec
Q psy7682 288 MKLDR---SGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWT 326 (383)
Q Consensus 288 tRHsl---dgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~ 326 (383)
.-.+. ||+|+++++.. ..++||.+++++|+++.++++
T Consensus 49 ~~~d~~~~~g~i~~~N~~~--~~l~G~~~~e~~g~~~~~l~~ 88 (166)
T 3ue6_A 49 VITDASLPDNPIVYASRGF--LTLTGYSLDQILGRNCRFLQG 88 (166)
T ss_dssp EEEETTSTTCCEEEECHHH--HHHHCCCHHHHTTSCGGGGCC
T ss_pred EEEEccCCCCcEEEECHHH--HHHhCcCHHHHcCCCHhheeC
Confidence 33456 89999999998 899999999999999877763
No 117
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=94.50 E-value=0.02 Score=43.94 Aligned_cols=41 Identities=5% Similarity=-0.074 Sum_probs=32.3
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccccC--CCccceecCCCC
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAVAC--KTSATVWTCPNS 330 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG--~S~yd~~~~~~~ 330 (383)
+...+.++.++++++.. ..++||.+++++| ..+.+++ ||++
T Consensus 20 i~~~d~~~~~~~~n~~~--~~~~G~~~~~~~~~~~~~~~~~-~~~d 62 (125)
T 3nja_A 20 SWVLHMESGRLEWSQAV--HDIFGTDSATFDATEDAYFQRV-HPDD 62 (125)
T ss_dssp EEEEETTTTEEEECHHH--HHHHTCCTTTCCCBHHHHHHHB-CTTT
T ss_pred EEEEEcCCCcEEECHHH--HHHhCCCcccccccHHHHHhhc-ChhH
Confidence 44567899999999998 7999999999999 4555554 4555
No 118
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=94.29 E-value=0.038 Score=40.55 Aligned_cols=48 Identities=29% Similarity=0.402 Sum_probs=38.7
Q ss_pred chhHHHhHHHHhhHHHHHHhHhhhhhhhcccccccCCCchhhhhhhhhhhhh
Q psy7682 3 CLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCL 54 (383)
Q Consensus 3 ~~~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 54 (383)
-..|++||+.-|..+.||.+|+... . ..+-..|.+|..||+.+++.+.
T Consensus 10 ~~~Er~RR~~in~~~~~L~~lvP~~--~--~~~~~~k~~Ka~IL~~ai~YI~ 57 (65)
T 1an4_A 10 NEVERRRRDKINNWIVQLSKIIPDS--S--MESTKSGQSKGGILSKASDYIQ 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCC--C--CCSSTTCCCTTTTTTTTHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHCcCc--c--cccccCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999999976 1 2222357899999999988764
No 119
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=94.13 E-value=0.02 Score=44.16 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=33.4
Q ss_pred eEEEeCCCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 286 FTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 286 F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
.+.-.+.+|+|+++++.+ ..++||.+++++|+++.+++
T Consensus 11 ~i~~~d~~g~i~~~N~~~--~~~~g~~~~~~~g~~~~~~~ 48 (126)
T 3mjq_A 11 MILIINREGRLLYANTAV--PKKLGYTHEELMSMHILTIT 48 (126)
T ss_dssp EEEEEETTSBEEEECTHH--HHHHSCCHHHHHHSBHHHHH
T ss_pred eEEEEeCCCcEEEEcHHH--HHHHCCCHHHHcCCCHHHHc
Confidence 344567899999999998 89999999999999998887
No 120
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=94.10 E-value=0.04 Score=40.34 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=29.5
Q ss_pred CCCcEEEEcCCCCccccCCcccccccCCC-ccceecCCC
Q psy7682 292 RSGTIIGMDTSGVSQTHTQYLNKAVACKT-SATVWTCPN 329 (383)
Q Consensus 292 ldgkf~~vD~r~l~~~ilGY~p~eLiG~S-~yd~~~~~~ 329 (383)
.+|+++++++.. ..++||.+++++|++ ..+++..++
T Consensus 12 ~~g~i~~~N~~~--~~~~g~~~~~~~g~~~~~~~~~~~~ 48 (110)
T 1byw_A 12 ENCAVIYCNDGF--CELCGYSRAEVMQRPCTCDFLHGPC 48 (110)
T ss_dssp SSCBEEEECHHH--HHHHTCCHHHHTTSBTTCGGGCCTT
T ss_pred CCCcEEEECHHH--HHHhCCCHHHHccCCCccccccCCc
Confidence 579999999998 899999999999998 355554443
No 121
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=93.78 E-value=0.033 Score=47.60 Aligned_cols=39 Identities=5% Similarity=0.039 Sum_probs=34.5
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceecC
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTC 327 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~ 327 (383)
+.-.+.||++++++... ..++||.++|++|+++++++..
T Consensus 35 i~v~D~~g~I~~~N~a~--~~~~G~~~~eviG~~~~~~~p~ 73 (152)
T 3mxq_A 35 LCIVRNDYVIVKVNEYF--ESRVIFDGETMQGKNILELFPE 73 (152)
T ss_dssp EEEEETTSBEEEECHHH--HHTSSSCHHHHTTSBHHHHSGG
T ss_pred EEEEcCCCEEEEECHHH--HHHHCcCHHHHCCCCHHHhcCC
Confidence 44568899999999998 8999999999999999999843
No 122
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=93.34 E-value=0.2 Score=38.43 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=49.9
Q ss_pred hhHHHhHHHHhhHHHHHHhHhhhhhhhcccccccCCCchhhhhhhhhhhhhHHHHHHHhhhHhHHHHHhh
Q psy7682 4 LNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQENNYIEELAEL 73 (383)
Q Consensus 4 ~~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ek~RR~~~n~~i~eL~~l 73 (383)
..|++||+.-|..+++|..+++.. . ..|.+|-.|+..+++.+..=+.+...+...+++|..-
T Consensus 8 ~~Er~RR~~in~~f~~Lr~lvP~~--~------~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 8 ALERKRRDHIKDSFHSLRDSVPSL--Q------GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSGGG--T------TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCC--C------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999965 1 2689999999999999877666666666666666543
No 123
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=93.25 E-value=0.2 Score=38.17 Aligned_cols=61 Identities=16% Similarity=0.318 Sum_probs=50.7
Q ss_pred hhHHHhHHHHhhHHHHHHhHhhhhhhhcccccccCCCchhhhhhhhhhhhhHHHHHHHhhhHhHHHHHh
Q psy7682 4 LNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQENNYIEELAE 72 (383)
Q Consensus 4 ~~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ek~RR~~~n~~i~eL~~ 72 (383)
..|++||+.-|..+++|..++... . ..|.+|-.||+.+++.+..=+.+.+.+.+.+.+|..
T Consensus 18 ~~Er~RR~~in~~f~~Lr~lvP~~--~------~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 18 ALERKRRDHIKDSFHSLRDSVPSL--Q------GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGG--T------TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCC--C------CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999975 1 257999999999999998777777777777776653
No 124
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=93.10 E-value=0.014 Score=59.99 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=45.1
Q ss_pred hcCcEEEEcC-CccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 142 LEGFLFVVNP-DGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 142 ldgfi~vvs~-dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
.-|++++++. +++|+++|+|+..+||.++++++|+++-+++-++....++..+
T Consensus 28 phG~LLal~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l~~~l 81 (520)
T 3zq5_A 28 PHGLVVVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQIDPIQSRL 81 (520)
T ss_dssp TTSEEEEEETTTTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEESSCCCCSSCC
T ss_pred CCeEEEEEECCCCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHHHHHHHHHHh
Confidence 4689999997 8999999999999999999999999999888776555554443
No 125
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=92.93 E-value=0.065 Score=41.57 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=32.2
Q ss_pred EEEeCC---CCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 287 TMKLDR---SGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 287 ~tRHsl---dgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
+.-.+. +|+++++++.. ..++||.+.+++|+++.+++
T Consensus 15 i~~~d~~~~~~~i~~~N~~~--~~~~g~~~~~~~g~~~~~~~ 54 (146)
T 2v0u_A 15 FVITDPRLPDNPIIFASDSF--LQLTEYSREEILGRNCRFLQ 54 (146)
T ss_dssp EEEECTTSTTCCEEEECHHH--HHHHCCCHHHHTTSCGGGGC
T ss_pred EEEEcCCCCCceEEEEcHHH--HHHHCcCHHHHcCCCHHHhc
Confidence 444577 89999999998 79999999999999988776
No 126
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=92.89 E-value=0.1 Score=39.05 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=31.9
Q ss_pred eEEEeCCCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 286 FTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 286 F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
.+.-.+.+|+++++++.. ..++||.+++++|+++..++
T Consensus 19 ~i~~~d~~~~i~~~N~~~--~~~~g~~~~~~~g~~~~~~~ 56 (124)
T 3lyx_A 19 AIVVTDLQGFIIDWNKGS--ETLYGYSKEQAIGQPVNMLH 56 (124)
T ss_dssp EEEEEETTCBEEEECHHH--HHHHCCCHHHHTTSBGGGGS
T ss_pred eEEEECCCCcEeehhhHH--HHHhCCCHHHHcCCCHHHhc
Confidence 344557899999999998 79999999999999987443
No 127
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=92.75 E-value=0.057 Score=42.48 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=34.7
Q ss_pred eeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceec
Q psy7682 285 QFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWT 326 (383)
Q Consensus 285 ~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~ 326 (383)
.-+.-.+.+|+|+++++.+ ..++||.+++++|+++.++++
T Consensus 23 ~~i~~~D~~g~i~~~N~a~--~~l~g~~~~e~~G~~~~~~~~ 62 (118)
T 3fg8_A 23 LGFMALDEDLRIIYVNSGC--LRHVRRSRDELLGRVVTEVLP 62 (118)
T ss_dssp CEEEEECTTCBEEEECHHH--HHHHTCCHHHHTTSBHHHHCG
T ss_pred ceEEEECCCCeEEEECHHH--HHHhCCCHHHHcCCcHHHHcC
Confidence 3345568899999999998 899999999999999998874
No 128
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=92.52 E-value=0.058 Score=40.68 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=30.1
Q ss_pred CCCcEEEEcCCCCccccCCcccccccCCCccceec
Q psy7682 292 RSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWT 326 (383)
Q Consensus 292 ldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~ 326 (383)
.+|+++++++.+ ..++||.+++++|+++.++++
T Consensus 27 ~~~~i~~~N~~~--~~~~g~~~~~~~g~~~~~~~~ 59 (130)
T 2z6d_A 27 PHCPIVYASSGF--FTMTGYSSKEIVGRNCRFLQG 59 (130)
T ss_dssp TTCCEEEECHHH--HHHHCCCHHHHTTSCGGGGCC
T ss_pred CCCcEEEecHHH--HHHhCcCHHHHcCCChhhccC
Confidence 799999999998 799999999999999887763
No 129
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=92.37 E-value=0.092 Score=40.34 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=32.2
Q ss_pred EEeCC---CCcEEEEcCCCCccccCCcccccccCCCc-cceecCCCC
Q psy7682 288 MKLDR---SGTIIGMDTSGVSQTHTQYLNKAVACKTS-ATVWTCPNS 330 (383)
Q Consensus 288 tRHsl---dgkf~~vD~r~l~~~ilGY~p~eLiG~S~-yd~~~~~~~ 330 (383)
.-.+. +|++++++..+ ..++||.+++++|+++ ++++..++.
T Consensus 33 ~~~d~~~~~g~i~~~N~~~--~~l~g~~~~~~~g~~~~~~~~~~~~~ 77 (138)
T 2l0w_A 33 IIANARVENCAVIYCNDGF--CELCGYSRAEVMQRPCTCDFLHGPRT 77 (138)
T ss_dssp EEEESSSTTCBEEEECSHH--HHHHSCCHHHHTTSBTTCGGGCCTTC
T ss_pred EEEecCCCCCEEEEeCHHH--HHHhCCCHHHHcCCCCcccccCCccc
Confidence 33455 89999999998 7999999999999984 555544444
No 130
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=91.96 E-value=0.15 Score=37.32 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=37.8
Q ss_pred hhHHHhHHHHhhHHHHHHhHhhhhhhhcccccccCCCchhhhhhhhhhhhh
Q psy7682 4 LNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCL 54 (383)
Q Consensus 4 ~~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 54 (383)
..|++||+.-|..++||..||... +.. +.-..+.+|..|+..+++.++
T Consensus 8 ~aEr~RR~rIn~~~~~L~~LlP~~-~~~--~~~~~k~sKa~iL~~Ai~YIk 55 (63)
T 1a0a_A 8 HAEQARRNRLAVALHELASLIPAE-WKQ--QNVSAAPSKATTVEAACRYIR 55 (63)
T ss_dssp GGTHHHHHHHHHHHHHHHHTSCHH-HHT--SSCCCCSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc-ccc--cccCCcccHHHHHHHHHHHHH
Confidence 469999999999999999999976 222 212478889999998876653
No 131
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=91.67 E-value=0.15 Score=41.97 Aligned_cols=55 Identities=29% Similarity=0.401 Sum_probs=42.3
Q ss_pred hhHHHhHHHHhhHHHHHHhHhhhhhhhcccccccCCCchhhhhhhhhhhhhHHHHHHHhhh
Q psy7682 4 LNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQEN 64 (383)
Q Consensus 4 ~~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ek~RR~~~n 64 (383)
..|++||+.=|..+.+|.+|+... .++ ..|.+|..||.++++.+..=+...+++.
T Consensus 33 ~~ERrRR~~In~~~~~L~~lvP~~---~~~---~~k~~Ka~IL~~aieYIk~Lq~~~~~l~ 87 (118)
T 4ati_A 33 LIERRRRFNINDRIKELGTLIPKS---NDP---DMRWNKGTILKASVDYIRKLQREQQRAK 87 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---cCc---cccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999976 122 3588999999999999865544444443
No 132
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=91.60 E-value=0.043 Score=41.50 Aligned_cols=39 Identities=0% Similarity=-0.104 Sum_probs=31.3
Q ss_pred eeEEEeCCC-CcEEEEcCCCCccccCCcccccccCCC--cccee
Q psy7682 285 QFTMKLDRS-GTIIGMDTSGVSQTHTQYLNKAVACKT--SATVW 325 (383)
Q Consensus 285 ~F~tRHsld-gkf~~vD~r~l~~~ilGY~p~eLiG~S--~yd~~ 325 (383)
..+...+.+ |+++++++.. ..++||.+++++|.. +.+++
T Consensus 22 ~~i~~~d~~~~~i~~~n~~~--~~~~g~~~~~~~~~~~~~~~~~ 63 (125)
T 3eeh_A 22 DILWEFTADLSEVLVINSAY--EDIWGRSVAKLRENPHDFLNGI 63 (125)
T ss_dssp CEEEEEETTSSCEEEECTHH--HHHHSSCHHHHHHCGGGGGGGB
T ss_pred ceEEEEEcCCCcEEEecHHH--HHHHCCCHHHHccCcHHHHHhc
Confidence 345566788 9999999998 799999999999987 34443
No 133
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=91.59 E-value=0.045 Score=45.92 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=33.7
Q ss_pred eeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccce
Q psy7682 285 QFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATV 324 (383)
Q Consensus 285 ~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~ 324 (383)
.=+...+.+|++++.+... ..+.||.+++++|+++++.
T Consensus 33 ~GiivlD~dg~I~~~N~~~--e~isG~s~eeviGk~~f~~ 70 (129)
T 1mzu_A 33 VGAIQVDGSGVIHRYNRTE--SRLSGRIPERVIGRNFFTE 70 (129)
T ss_dssp SEEEEEETTCBEEEECHHH--HHHHCCCHHHHTTSBCCCC
T ss_pred ceEEEECCCCeEEEEHHHH--HHHhCCCHHHHcCCchhhh
Confidence 3466778999999999998 8999999999999999874
No 134
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=91.50 E-value=0.056 Score=55.41 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=47.7
Q ss_pred hcCcEEEEcCCccEEEeecccccccCcccccccCCcccc-ccCCCChHHHHhhcCCC
Q psy7682 142 LEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYN-LIHHGDHARFHNCLVPS 197 (383)
Q Consensus 142 ldgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d-~iHp~D~~~~~~~l~~~ 197 (383)
.-|++++++.++.|+++|+|+..+||.++ ++|+++-+ ++-++....+++.+...
T Consensus 25 phG~Ll~l~~~~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~~~~~~~l~~~l~~~ 79 (505)
T 3nhq_A 25 PHGALVTLRADGMVLAASENIQALLGFVA--SPGSYLTQEQVGPEVLRMLEEGLTGN 79 (505)
T ss_dssp TTEEEEEECTTSBEEEEETTHHHHHSSCC--CTTCBCCHHHHHHHHHHHHHHHHSCS
T ss_pred CCeEEEEEcCCCeEEEEcccHHHHhCccc--ccCCchhhhhCCHHHHHHHHHHhhcc
Confidence 46899999999999999999999999998 99999999 88887778888777543
No 135
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=91.15 E-value=0.2 Score=40.46 Aligned_cols=38 Identities=5% Similarity=0.127 Sum_probs=33.0
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceec
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWT 326 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~ 326 (383)
+.-.+.+|+++++++.+ ..++||.+.+++|+.+.++++
T Consensus 53 i~~~d~~g~i~~~N~~~--~~l~g~~~~~~~g~~~~~~~~ 90 (167)
T 1v9y_A 53 AVLINENDEVMFFNPAA--EKLWGYKREEVIGNNIDMLIP 90 (167)
T ss_dssp EEEECTTSBEEEECHHH--HHHHSCCGGGTTTSBGGGGSC
T ss_pred EEEECCCCcEEEECHHH--HHHhCCCHHHHcCCChhhccC
Confidence 34467899999999998 799999999999999888763
No 136
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=90.94 E-value=0.11 Score=37.00 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=31.6
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccccCCCccce
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATV 324 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~ 324 (383)
+.-.+.+|+++++++.+ ..++||.+++++|+++.++
T Consensus 5 i~~~d~~g~i~~~N~~~--~~l~g~~~~~~~g~~~~~~ 40 (96)
T 3a0s_A 5 IITLSKDGRITEWNKKA--EQLFGLKKENVLGRRLKDL 40 (96)
T ss_dssp EEEEETTSBEEEECHHH--HHHHCCCHHHHTTSBGGGS
T ss_pred EEEEcCCCCEeehhHHH--HHHhCCCHHHhcCCCHHHC
Confidence 34457899999999998 8999999999999998776
No 137
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=90.86 E-value=0.56 Score=36.49 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=44.4
Q ss_pred hHHHhHHHHhhHHHHHHhHhhhhhhhcccccccCCCchhhhhhhhhhhhhHHHHHHHhhhHhHHHH
Q psy7682 5 NEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQENNYIEEL 70 (383)
Q Consensus 5 ~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ek~RR~~~n~~i~eL 70 (383)
.|++||+.=+.+.++|.+++... . . ..|.+|..||+++.+.+..=..+.......+++|
T Consensus 13 ~ER~RR~~ln~~f~~Lr~~vP~~--~---~--~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 13 LERQRRNELKRSFFALRDQIPEL--E---N--NEKAPKVVILKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGG--T---T--CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC--C---C--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999975 1 1 2689999999999988876554444433333333
No 138
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=90.81 E-value=0.057 Score=42.17 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=31.3
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccc--cCCCcccee
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAV--ACKTSATVW 325 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eL--iG~S~yd~~ 325 (383)
+.-.+.+|+|+++++.. ..++||.++|| +|++.++++
T Consensus 30 i~~~d~~g~i~~~N~a~--~~~~G~~~~el~g~g~~~~~~~ 68 (126)
T 3bwl_A 30 IDVLDADGTICEVNQRF--CAELGYDESEVLGRSIWEFDLM 68 (126)
T ss_dssp EEEECTTCBEEEECHHH--HHHHTCCGGGTTTSBGGGTBTT
T ss_pred EEEEcCCCCEEEEcHHH--HHHhCCCHHHHhhCCCchhhcc
Confidence 44568899999999998 79999999999 578777765
No 139
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=90.46 E-value=0.067 Score=41.25 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=34.0
Q ss_pred eeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 285 QFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 285 ~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
..+.-.+.+|+|+++++.+ ..++||.+++++|+++.+++
T Consensus 30 ~~i~~~d~~g~i~~~N~~~--~~~~g~~~~~~~g~~~~~~~ 68 (125)
T 3fc7_A 30 DGIVHLTTNGTILSVNPSM--AGRLGADPDTLVGQQLSAVM 68 (125)
T ss_dssp CEEEEEETTSBEEEECHHH--HHHHTSCHHHHTTSBGGGSS
T ss_pred CeEEEEcCCCeEEEECHHH--HHHhCCCHHHHcCccHHHhC
Confidence 3445568899999999998 89999999999999998876
No 140
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=90.06 E-value=0.21 Score=40.42 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=32.5
Q ss_pred EEEeCCCC---cEEEEcCCCCccccCCcccccccCCCccceecC
Q psy7682 287 TMKLDRSG---TIIGMDTSGVSQTHTQYLNKAVACKTSATVWTC 327 (383)
Q Consensus 287 ~tRHsldg---kf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~ 327 (383)
+.-.+.+| ++++++... ..++||.+++++|+++.++++.
T Consensus 38 i~~~d~~~~~~~i~~~N~~~--~~~~g~~~~~~~g~~~~~~~~~ 79 (162)
T 3sw1_A 38 IVVAEKEGDDTILIYVNAAF--EYLTGYSRDEILYQDCRFLQGD 79 (162)
T ss_dssp EEEEEEETTEEEEEEECHHH--HHHHTCCHHHHTTSBGGGGTTT
T ss_pred EEEEeCCCCccEEEEECHHH--HHHHCCCHHHHcCCCcceecCC
Confidence 44456678 999999998 7999999999999998777643
No 141
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=89.89 E-value=0.64 Score=35.51 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=47.6
Q ss_pred hHHHhHHHHhhHHHHHHhHhhhhhhhcccccccCCCchhhhhhhhhhhhhHHHHHHHhhhHhHHHHHh
Q psy7682 5 NEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQENNYIEELAE 72 (383)
Q Consensus 5 ~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ek~RR~~~n~~i~eL~~ 72 (383)
.|++||++-+.+.++|.++++.. . + ..|.+|-.|++++.+.+..-+.+..+....+++|..
T Consensus 8 ~ER~RR~~lk~~f~~Lr~~vP~~--~-~----~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 8 MEKNRRAHLRLSLEKLKGLVPLG--P-D----SSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCC--S-S----SCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC--C-C----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999864 1 1 256778999999999998766666666666666554
No 142
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=89.22 E-value=0.064 Score=51.16 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=39.0
Q ss_pred HHHhhcCcEEEEcCCccEEEeecccccccC---cccccccCCccccccCCC
Q psy7682 138 LLEALEGFLFVVNPDGYVNFCTENIKSFIR---YSRQEVLGKSVYNLIHHG 185 (383)
Q Consensus 138 ll~aldgfi~vvs~dG~i~yvS~sv~~~LG---y~~~el~G~s~~d~iHp~ 185 (383)
+++++..-|+++|.+|+|+|+|+++..+|| +. .+++|+++.+++.+.
T Consensus 175 ~~~~~~dGIivvD~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~ 224 (305)
T 2ykf_A 175 SSPRAGDGFIRLDVDGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPL 224 (305)
Confidence 455666668999999999999999999975 54 789999999988643
No 143
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=89.25 E-value=0.22 Score=52.27 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=34.6
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceecCCCC
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTCPNS 330 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~~~~ 330 (383)
+...+++|+|+|+++++ ..++||.++|++|++.+++. ++++
T Consensus 531 i~~~D~~grI~~~N~a~--~~l~G~s~~e~~g~~~l~~~-~~~~ 571 (635)
T 4eho_A 531 VLITDAEGRILLMNDSF--RDMLPAGSPSAVHLDDLAGF-FVES 571 (635)
T ss_dssp CEEEETTCCEEEECHHH--HTTSCSSCCCCCSSGGGTTS-SSSC
T ss_pred EEEECCCCeEeeHHHHH--HHHHCcChHHHcCcchhhcc-CCCC
Confidence 45568999999999998 89999999999999877654 5565
No 144
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=88.08 E-value=0.34 Score=40.26 Aligned_cols=38 Identities=21% Similarity=0.106 Sum_probs=33.7
Q ss_pred eeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccce
Q psy7682 285 QFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATV 324 (383)
Q Consensus 285 ~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~ 324 (383)
.=+...+.||++++.+... ..+.||.+++++|+++++.
T Consensus 28 ~Gii~lD~~g~I~~~N~~~--e~~sG~~~~eviGk~~f~~ 65 (125)
T 1nwz_A 28 FGAIQLDGDGNILQYNAAE--GDITGRDPKQVIGKNFFKD 65 (125)
T ss_dssp SEEEEEETTCBEEEECHHH--HHHHCCCHHHHTTSBCCCC
T ss_pred ceEEEECCCCEEEEEHHHH--HHHhCCCHHHHcCCchhhh
Confidence 3466778999999999998 8999999999999999874
No 145
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=87.49 E-value=0.26 Score=45.40 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=41.5
Q ss_pred HHHhhcCcEEEEcC-CccEEEeecccccccCcccccc----cC----CccccccCCCChHHHH
Q psy7682 138 LLEALEGFLFVVNP-DGYVNFCTENIKSFIRYSRQEV----LG----KSVYNLIHHGDHARFH 191 (383)
Q Consensus 138 ll~aldgfi~vvs~-dG~i~yvS~sv~~~LGy~~~el----~G----~s~~d~iHp~D~~~~~ 191 (383)
+.....+.++++|. ++.+.|+|+++..+|||+++++ +. .-++..+||+|.....
T Consensus 38 ~~~~~~~~~~l~D~~~~~~~~~s~~~~~llG~~~~~~~~~~~~~~~~~~ll~~i~p~D~~~~~ 100 (258)
T 3clo_A 38 LTEVNGGCAVISDLSNRKSYVTVHPWANFLGLTPEEAALSVIDSMDEDCIYRRIHPEDLVEKR 100 (258)
T ss_dssp HHHHHSSEEEEEETTTTEEEEEECTTCGGGCCCHHHHHCCEESSSSCHHHHTTBCHHHHHHHH
T ss_pred HHHHcCCeEEEEEcCCCeEEEEeCCHHHHhCCCcccchHHHHhhhHHHHHHHhCChHHHHHHH
Confidence 34445667778885 8999999999999999998877 32 2366788999977543
No 146
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=85.70 E-value=0.15 Score=38.97 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=33.3
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccccCCCccceec
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWT 326 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~ 326 (383)
+.-.+.+|+++++++.+ ..++||.+++++|+++.+++.
T Consensus 20 i~~~D~~g~I~~~N~aa--~~l~g~~~~~~~g~~~~~~~~ 57 (115)
T 3b33_A 20 TLILDDGLAIRYANPAA--ELLFSQSAKRIVEQSLSQLIQ 57 (115)
T ss_dssp EEEECTTCBEEEECHHH--HHHTTSCHHHHTTCBHHHHCS
T ss_pred EEEECCCCcEEEECHHH--HHHhCCCHHHHhCCCHHHHhC
Confidence 44567899999999998 899999999999999988764
No 147
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=81.99 E-value=0.2 Score=39.41 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=31.2
Q ss_pred EEEeCCCCcEEEEcCCCCccccCC------------cccccccCCCcccee
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQ------------YLNKAVACKTSATVW 325 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilG------------Y~p~eLiG~S~yd~~ 325 (383)
+.--+.+|+++|+++.+ ..++| |.+++++|+++.+++
T Consensus 18 viv~D~~g~I~~~N~a~--~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~ 66 (121)
T 4hi4_A 18 VMIADNDLNIIYMNRTV--SEMLGRAEADIRKQLPNFDAGRLMGANIDVFH 66 (121)
T ss_dssp EEEEETTCBEEEECHHH--HHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGC
T ss_pred EEEEcCCCeEEEecHHH--HHHHHHHHHHHHHhcCCCChHHhcCCCHHHhc
Confidence 44457899999999997 78875 999999999998876
No 148
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=80.54 E-value=0.92 Score=38.37 Aligned_cols=38 Identities=8% Similarity=0.157 Sum_probs=32.1
Q ss_pred EEEeC-CCCcEEEEcCCCCccccCCcccccccCCCccceecCC
Q psy7682 287 TMKLD-RSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWTCP 328 (383)
Q Consensus 287 ~tRHs-ldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~~~ 328 (383)
+.-.+ .||+|+++++.. ..++||. +++|+++.++++..
T Consensus 50 i~~~d~~~g~i~~~N~a~--~~l~G~~--~~~G~~~~~~~~~~ 88 (185)
T 3kx0_X 50 LVGLEGPDHRFVAVNAAY--RGFSPLL--DTVGQPAREVYPEL 88 (185)
T ss_dssp EEEEETTTTEEEEECHHH--HHHCCCC--SCTTSBHHHHCTTS
T ss_pred EEEEECCCcEEEEEcHHH--HHHcCCc--cccCCcHHHHCCch
Confidence 44456 899999999998 7999998 99999999988543
No 149
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=78.55 E-value=0.68 Score=37.37 Aligned_cols=36 Identities=8% Similarity=0.215 Sum_probs=31.0
Q ss_pred EEEeC-CCCcEEEEcCCCCccccCCcccccccCCCccceec
Q psy7682 287 TMKLD-RSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVWT 326 (383)
Q Consensus 287 ~tRHs-ldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~~ 326 (383)
+.-.+ .+|+|+++++.. ..++||. +++|+++.++++
T Consensus 30 i~~~d~~~~~i~~~N~~~--~~~~g~~--~~~G~~~~~~~~ 66 (158)
T 3k3c_A 30 LVGLEGPDHRFVAVNAAY--RGFSPLL--DTVGQPAREVYP 66 (158)
T ss_dssp EEEEETTTTEEEEECHHH--HHHCTTC--CSTTSBHHHHSG
T ss_pred EEEEECCCcEeHHHHHHH--HHHcCCc--hhcCCcHHHhCC
Confidence 34456 899999999998 7999998 999999999874
No 150
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=78.12 E-value=0.52 Score=42.47 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=32.7
Q ss_pred eeEEEeCCCCcEEEEcCCCCccccC------------CcccccccCCCcccee
Q psy7682 285 QFTMKLDRSGTIIGMDTSGVSQTHT------------QYLNKAVACKTSATVW 325 (383)
Q Consensus 285 ~F~tRHsldgkf~~vD~r~l~~~il------------GY~p~eLiG~S~yd~~ 325 (383)
.-+.-.+.+|+|+|+++.+ ..++ ||.+++++|+++.+|+
T Consensus 33 ~~vii~D~~g~I~~~N~a~--~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~ 83 (233)
T 3vol_A 33 ANVMIADNDLNIIYMNRTV--SEMLGRAEADIRKQLPNFDAGRLMGANIDVFH 83 (233)
T ss_dssp SEEEEEETTSBEEEECHHH--HHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGS
T ss_pred CcEEEECCCCcEEEecHHH--HHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHc
Confidence 3455567899999999997 6766 9999999999998876
No 151
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=74.94 E-value=0.32 Score=36.57 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=31.2
Q ss_pred EEeCCCCcEEEEcCCCCccccCCc---ccccccCCCcccee
Q psy7682 288 MKLDRSGTIIGMDTSGVSQTHTQY---LNKAVACKTSATVW 325 (383)
Q Consensus 288 tRHsldgkf~~vD~r~l~~~ilGY---~p~eLiG~S~yd~~ 325 (383)
.-.+.+|+++++++.+ ..++|| .+++++|+++.+++
T Consensus 29 ~~~d~~g~i~~~N~~~--~~~~g~~~~~~~~~~g~~~~~~~ 67 (118)
T 2w0n_A 29 VAVDDRGEVTLINDAA--QELLNYRKSQDDEKLSTLSHSWS 67 (118)
T ss_dssp EEEBTTTBCCCBCHHH--HHHHCSCTTTTTSSCCCTTCCCS
T ss_pred EEECCCCcEeehhHHH--HHHhCCCccChhhhhccCccccc
Confidence 3457899999999998 899998 78999999988876
No 152
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=70.73 E-value=5.9 Score=30.38 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=39.6
Q ss_pred HHhhHHHHHHhHhhhhhhhcccccccCCCchhhhhhhhhhhhhHHHHHHHhhhHhHHHHHh
Q psy7682 12 QENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQENNYIEELAE 72 (383)
Q Consensus 12 ~~~~~~~e~~~~~~a~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ek~RR~~~n~~i~eL~~ 72 (383)
-=|.+|-||..|+.-+ ++ ...|..|-.||+++++-++-=+.-+.++.++-..++.
T Consensus 6 nIN~~I~EL~~LiP~~---~~---~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~ 60 (83)
T 4ath_A 6 NINDRIKELGTLIPKS---ND---PDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKK 60 (83)
T ss_dssp HHHHHHHHHHHHSCCC---CC---TTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hHHHhhhhhhccCCCC---CC---cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999965 22 2468899999999999876655555555555555444
No 153
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=70.16 E-value=3.7 Score=34.37 Aligned_cols=36 Identities=3% Similarity=-0.035 Sum_probs=30.9
Q ss_pred EEEeCCCCcEEEEcCC---CCccccCCcccccccCCCcccee
Q psy7682 287 TMKLDRSGTIIGMDTS---GVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r---~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
++=-+.+|+|+|++.. . ..++| .+++++|+++++++
T Consensus 32 I~~vD~~g~I~~~N~a~~~~--~~i~g-~~~~~iGr~v~~~~ 70 (151)
T 2qkp_A 32 ITFVNKDDIFQYYNDSVPAA--EMVFK-RTPSQVGRNVELCH 70 (151)
T ss_dssp EEEEETTSBEEEECCCSCGG--GCSSC-CCGGGTTSBGGGSS
T ss_pred eEEEcCCCeEEEEeCCCchh--hhhcC-CCHHHcCCCHHHhC
Confidence 4556889999999999 7 79999 67899999998764
No 154
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=68.83 E-value=1.3 Score=37.44 Aligned_cols=37 Identities=8% Similarity=-0.008 Sum_probs=32.8
Q ss_pred EEEeCCCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 287 TMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 287 ~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
+.-.+.+|+++++++.+ ..++||.+++++|+++.+++
T Consensus 93 vi~~D~~g~I~~~N~aa--~~llg~~~~~~~g~~~~~~~ 129 (190)
T 2jhe_A 93 VLSVDMKSKVDMANPAS--CQLFGQKLDRLRNHTAAQLI 129 (190)
T ss_dssp EEEECTTCBEEEECHHH--HHHHTSCHHHHTTSBGGGTS
T ss_pred EEEEcCCCCEEEEcHHH--HHHhCCCHHHhcCccHHHHh
Confidence 44557899999999998 89999999999999998876
No 155
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=65.20 E-value=0.82 Score=42.69 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=33.0
Q ss_pred eeEEEeCCCCcEEEEcCCCCccccCCcccccccCCCccce
Q psy7682 285 QFTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATV 324 (383)
Q Consensus 285 ~F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~ 324 (383)
.-+.-.+.+|+|+++++.+ ..++||.++|++|+++.++
T Consensus 19 ~~i~~~d~~g~i~~~N~a~--~~l~G~~~~e~~G~~~~~~ 56 (349)
T 3a0r_A 19 TAIITLSKDGRITEWNKKA--EQLFGLKKENVLGRRLKDL 56 (349)
T ss_dssp SEEEEEESSSBCSCBCHHH--HHHHSCCSTTTTTCBSTTS
T ss_pred CeEEEECCCCCEEeeHHHH--HHHhCCCHHHHcCcCHHHC
Confidence 3455567899999999998 8999999999999998776
No 156
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=54.85 E-value=19 Score=26.89 Aligned_cols=43 Identities=30% Similarity=0.342 Sum_probs=33.6
Q ss_pred hHHHhHHHHhhHHHHHHhHhhhhhhhcccccccCCC-chhhhhhhhhhhhh
Q psy7682 5 NEKRRREQENNYIEELAELISAASFAESMSSLAVKP-DKCAILQETVNQCL 54 (383)
Q Consensus 5 ~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~k~-~~~~~~~~~~~~~~ 54 (383)
.|++||+.=|..+++|..++... . +. .|. .|-.||+++++-+.
T Consensus 12 ~ER~Rr~~IN~~f~~Lr~~vP~~--~-~~----~K~~sK~~IL~~AieYI~ 55 (76)
T 3u5v_A 12 LERKRRRDINEAFRELGRMCQMH--L-KS----DKAQTKLLILQQAVQVIL 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--H-CC----CCCCCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHcCCC--C-Cc----cccccHHHHHHHHHHHHH
Confidence 69999999999999999999964 1 22 344 68899988876553
No 157
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=54.21 E-value=4.4 Score=39.13 Aligned_cols=32 Identities=6% Similarity=-0.090 Sum_probs=29.3
Q ss_pred CCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 292 RSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 292 ldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
-++++++++.++ ..++|+.|++++|+++-+++
T Consensus 51 ~~~~i~~~S~N~--~~~lg~~~~~llG~~l~~ll 82 (337)
T 2ool_A 51 TDLRIASVSANV--EDLLRQPPASLLNVPIAHYL 82 (337)
T ss_dssp TTCBEEEEETTH--HHHHSSCGGGGTTCBGGGGB
T ss_pred CCCEEEEEehhH--HHHHCcCHHHHcCCCHHHHc
Confidence 368999999998 89999999999999988876
No 158
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=41.28 E-value=17 Score=27.10 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=18.3
Q ss_pred HHhhcCcEEEEcCCccEEEeecc
Q psy7682 139 LEALEGFLFVVNPDGYVNFCTEN 161 (383)
Q Consensus 139 l~aldgfi~vvs~dG~i~yvS~s 161 (383)
|++.+.+-=|+|..|+++|+|+.
T Consensus 45 Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 45 LLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp HHHHSSSCEEECTTCCEEECCCS
T ss_pred HHHCCCeEEEEeCCCCEEEecHH
Confidence 34556666799999999999984
No 159
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=39.72 E-value=59 Score=27.85 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=30.7
Q ss_pred cCcEEEEcCCccEEEeecccccccCcc-cccccCCccccccCCCChHHHHhhc
Q psy7682 143 EGFLFVVNPDGYVNFCTENIKSFIRYS-RQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 143 dgfi~vvs~dG~i~yvS~sv~~~LGy~-~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
+|+++|+|.+|.++. ++ ..+++|+++.++-.|.....+++.+
T Consensus 69 ~gY~fv~d~~g~~l~----------hP~~p~l~Gk~~~~~~D~~G~~~~~~~~ 111 (181)
T 3ub6_A 69 MIYMVVVDKNGVVLF----------DPVNPKTVGQSGLDAQSVDGVYYVRGYL 111 (181)
T ss_dssp SCEEEEECTTCBEEE----------CTTSGGGTTSBCTTCCCTTSCCHHHHHH
T ss_pred CCEEEEEeCCCCEEE----------eCCChhhcCCccccccCCCccHHHHHHH
Confidence 378999999997653 22 4588999999987777765555544
No 160
>2p08_A Signal transduction histidine kinase; PAS-like domain, homologous to domain in soluble guanylyl CY transferase; 2.00A {Nostoc punctiforme} PDB: 2p04_A
Probab=31.12 E-value=21 Score=28.63 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=37.9
Q ss_pred CcEEEEcCCccEEEeecccccccCcccccccCCcc---ccccCCCChHHHHhhcCC
Q psy7682 144 GFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSV---YNLIHHGDHARFHNCLVP 196 (383)
Q Consensus 144 gfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~---~d~iHp~D~~~~~~~l~~ 196 (383)
-|-+++|.+|+|+.+.+++.++++-. ..|..+ |++++|.-...+.+.+..
T Consensus 12 PfHlvfd~~~~I~q~G~~L~k~~p~~---~~g~~~~d~F~l~RP~~~~tf~~i~~~ 64 (115)
T 2p08_A 12 PFHFAFSRNREIVQTGEVLERISPEP---LVGKLIEQHFQINRPKILIDFDAISKQ 64 (115)
T ss_dssp TTCEEECTTCBEEEECHHHHHHCSSC---CTTSBGGGTEEEEESSCCSCHHHHHTC
T ss_pred CeEEEECCCCEEEEeccHHHHhCccc---cCCCChhHeEEEeCCCcccCHHHHHhh
Confidence 37789999999999999999998642 368766 557888865566665543
No 161
>4exo_A Methyl-accepting chemotaxis protein; signaling protein, chemotaxis receptor, PAS domain, four HEL bundle; HET: MSE; 1.90A {Vibrio parahaemolyticus}
Probab=24.13 E-value=65 Score=26.31 Aligned_cols=43 Identities=19% Similarity=0.441 Sum_probs=30.0
Q ss_pred cCcEEEEcCCccEEEeecccccccCcccccccCCccccccCCCChHHHHhhc
Q psy7682 143 EGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194 (383)
Q Consensus 143 dgfi~vvs~dG~i~yvS~sv~~~LGy~~~el~G~s~~d~iHp~D~~~~~~~l 194 (383)
+|+++|+|.+|.++.- | ...+++|+++.++-.|+....+++.+
T Consensus 57 ~gY~fv~d~~G~~l~h-p--------~~p~l~Gk~~~~~~d~~G~~~~~~~~ 99 (146)
T 4exo_A 57 DGYFFAYDSQGINTLH-A--------IKPSLEGKNLYDLKDENGVAVIAGLI 99 (146)
T ss_dssp TBCCEEECTTSBEEEE-S--------SCGGGTTCBCTTCBCTTCCBHHHHHH
T ss_pred CCEEEEEeCCCcEEEe-c--------CChhhcCCCcccccCCchhHHHHHHH
Confidence 6789999999987532 1 13478899998887776655555544
No 162
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=24.06 E-value=60 Score=30.96 Aligned_cols=36 Identities=6% Similarity=-0.053 Sum_probs=29.9
Q ss_pred eEEEeCCCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 286 FTMKLDRSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 286 F~tRHsldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
=++-.+.+|+|+|++.. ..++ |.+.+++|+++++++
T Consensus 251 gIivvD~~g~I~~~N~a---e~i~-~~~~e~iGr~v~~~~ 286 (369)
T 3cax_A 251 DVTFIDKDDRVRFFSPG---ERIF-TRTPSVLGRPVQLCH 286 (369)
T ss_dssp EEEEECTTSBEEEECCS---SCSS-CCCGGGTTCBTTTSS
T ss_pred cEEEECCCCcEEEEcCH---HHcc-CChHHHcCCcHHHHC
Confidence 35566889999999987 2667 899999999998875
No 163
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=20.06 E-value=19 Score=34.79 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=29.3
Q ss_pred CCCcEEEEcCCCCccccCCcccccccCCCcccee
Q psy7682 292 RSGTIIGMDTSGVSQTHTQYLNKAVACKTSATVW 325 (383)
Q Consensus 292 ldgkf~~vD~r~l~~~ilGY~p~eLiG~S~yd~~ 325 (383)
.|+++++++.++ ..+||..|++++|+++-+++
T Consensus 61 ~~~~I~~~S~N~--~~~lg~~~~~llG~~l~~ll 92 (343)
T 3s7o_A 61 HSGEVLQMSLNA--ATFLGQEPTVLRGQTLAALL 92 (343)
T ss_dssp TTCBEEEEETTH--HHHHSSCHHHHTTCBHHHHS
T ss_pred CCCEEEEEcccH--HHHhCcChHHHcCCCHHHHH
Confidence 389999999998 89999999999999987776
Done!