RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7682
(383 letters)
>gnl|CDD|214512 smart00091, PAS, PAS domain. PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels.
Length = 67
Score = 54.3 bits (131), Expect = 7e-10
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 137 LLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194
+LE+L +FV++ DG + + + + YS +E++GKS+ LIH D R L
Sbjct: 5 AILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPEDRERVQEAL 62
>gnl|CDD|238075 cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria
and eukarya. Probably the most surprising identification
of a PAS domain was that in EAG-like K+-channels. PAS
domains have been found to bind ligands, and to act as
sensors for light and oxygen in signal transduction.
Length = 103
Score = 51.1 bits (122), Expect = 3e-08
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 144 GFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARF 190
+ V++ DG + + + + YS +E++GKS+ +LIH D
Sbjct: 3 DGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREEL 49
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain.
Length = 53
Score = 48.0 bits (115), Expect = 1e-07
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 54 LNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE 110
E+RRR + N +EL L+ + K K IL+ + I++++++
Sbjct: 2 ARERRRRRKINEAFDELRSLLPTLPKNK-------KLSKAEILRLAIEYIKSLQEEL 51
Score = 41.1 bits (97), Expect = 2e-05
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 4 LNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVN 51
E+RRR + N +EL L+ + K K IL+ +
Sbjct: 2 ARERRRRRKINEAFDELRSLLPTLPKNK-------KLSKAEILRLAIE 42
>gnl|CDD|216228 pfam00989, PAS, PAS fold. The PAS fold corresponds to the
structural domain that has previously been defined as
PAS and PAC motifs. The PAS fold appears in archaea,
eubacteria and eukarya.
Length = 113
Score = 49.3 bits (118), Expect = 1e-07
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 138 LLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194
+LE+L +FVV+ DG + + + + SR+EV+GKS+ +LI D A L
Sbjct: 6 ILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEDDDAEVAELL 62
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA-
binding proteins that act as transcription factors;
60-100 amino acids long. A DNA-binding basic region is
followed by two alpha-helices separated by a variable
loop region; HLH forms homo- and heterodimers,
dimerization creates a parallel, left-handed, four helix
bundle; the basic region N-terminal to the first
amphipathic helix mediates high-affinity DNA-binding;
there are several groups of HLH proteins: those
(E12/E47) which bind specific hexanucleotide sequences
such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3),
those lacking the basic domain (Emc, Id) function as
negative regulators since they fail to bind DNA, those
(hairy, E(spl), deadpan) which repress transcription
although they can bind specific hexanucleotide sequences
such as N-box (5-CACGc/aG-3), those which have a COE
domain (Collier/Olf-1/EBF) which is involved in both in
dimerization and in DNA binding, and those which bind
pentanucleotides ACGTG or GCGTG and have a PAS domain
which allows the dimerization between PAS proteins, the
binding of small molecules (e.g., dioxin), and
interactions with non-PAS proteins.
Length = 60
Score = 46.1 bits (110), Expect = 5e-07
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE 110
E+RRRE+ N+ +EL L+ ++ K K IL++ V+ I+++++
Sbjct: 12 ERRRRERINDAFDELRSLLPTLPPSK-------KLSKAEILRKAVDYIKSLQELL 59
Score = 41.0 bits (97), Expect = 3e-05
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 1 AKCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRR 60
A L E+RRRE+ N+ +EL L+ ++ K K IL++ V+ + +
Sbjct: 7 AHNLRERRRRERINDAFDELRSLLPTLPPSK-------KLSKAEILRKAVDYIKSLQELL 59
Query: 61 E 61
+
Sbjct: 60 Q 60
>gnl|CDD|222120 pfam13426, PAS_9, PAS domain.
Length = 101
Score = 39.7 bits (93), Expect = 2e-04
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 146 LFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194
+ V++PDG + + + + Y+R+E+LGKS+ +L GD L
Sbjct: 1 ILVLDPDGRIVYANDAALRLLGYTREELLGKSIRDLFGPGDDEEAVARL 49
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain.
Length = 52
Score = 33.2 bits (77), Expect = 0.014
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIR 104
E+RRR++ N+ EEL EL+ K K IL+ + I+
Sbjct: 9 ERRRRDRINDAFEELRELLPTPP--------NKKLSKAEILRLAIEYIK 49
Score = 32.0 bits (74), Expect = 0.034
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 1 AKCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVN 51
A E+RRR++ N+ EEL EL+ K K IL+ +
Sbjct: 4 AHNERERRRRDRINDAFEELRELLPTPP--------NKKLSKAEILRLAIE 46
>gnl|CDD|225112 COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction
mechanisms].
Length = 232
Score = 32.9 bits (73), Expect = 0.22
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 137 LLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFH 191
LLEA ++V++ DG + + + + YS +E LG+ + +LIH D R
Sbjct: 116 ALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEERRE 170
>gnl|CDD|219845 pfam08448, PAS_4, PAS fold. The PAS fold corresponds to the
structural domain that has previously been defined as
PAS and PAC motifs. The PAS fold appears in archaea,
eubacteria and eukarya.
Length = 110
Score = 31.2 bits (71), Expect = 0.25
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 139 LEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFH 191
L++L L V++PDG V + +E+LGK++ L+ D AR
Sbjct: 1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELLPPEDAARLE 53
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 32.6 bits (75), Expect = 0.33
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 14 NNYIEELAELIS--AASFAESMSSLAVKPDKCAILQETVNQ--CLNEKRRREQENNYIEE 69
N+ EE+ EL S M + A K D L E Q L EK R+E E Y +
Sbjct: 138 KNHEEEVRELQSQIQGQVNVEMDA-ARKLDLTKALAEIRAQYEELAEKNRQEAEEWYKSK 196
Query: 70 LAELISAAS 78
L EL AA+
Sbjct: 197 LEELQQAAA 205
>gnl|CDD|227095 COG4753, COG4753, Response regulator containing CheY-like receiver
domain and AraC-type DNA-binding domain [Signal
transduction mechanisms].
Length = 475
Score = 31.9 bits (73), Expect = 0.57
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 38 VKPDKCAILQETVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQ 97
+KP A L+E + + + + +++ IE+L L+ E + LA K K
Sbjct: 104 LKPVDKAELEEALKKIIGKLEEQQKVKQDIEKLLTLLIG---HEPLEELAKKIYKWEGA- 159
Query: 98 ETVNQIRNIKQQETSSDAVQQGEVSSSKPTVITNEVLGPLLLEALE 143
T Q + Q T D + E+S S + + E +G +LE
Sbjct: 160 -TGIQSQLADSQRTLKDLAEHLELSPSYLSQLFKEEVGLFILERFL 204
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 31.9 bits (73), Expect = 0.65
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 21 AELISAASFAESMSSLAVKPDKCA---ILQETVNQCLNEKRRREQENNYIEELAEL---- 73
A + A E+ + + + I E + ++R+E E Y + EL
Sbjct: 721 ALAEAEARLIEAEAEVEQAELRAKALRIEAEA--ELEKLRKRQELELEYEQAQNELEIAK 778
Query: 74 ------ISAASFAESMSSL 86
I A F + +L
Sbjct: 779 AKELADIEATKFERIVEAL 797
>gnl|CDD|232884 TIGR00229, sensory_box, PAS domain S-box. The PAS domain was
previously described. This sensory box, or S-box domain
occupies the central portion of the PAS domain but is
more widely distributed. It is often tandemly repeated.
Known prosthetic groups bound in the S-box domain
include heme in the oxygen sensor FixL, FAD in the redox
potential sensor NifL, and a 4-hydroxycinnamyl
chromophore in photoactive yellow protein. Proteins
containing the domain often contain other regulatory
domains such as response regulator or sensor histidine
kinase domains. Other S-box proteins include
phytochromes and the aryl hydrocarbon receptor nuclear
translocator [Regulatory functions, Small molecule
interactions].
Length = 124
Score = 30.3 bits (69), Expect = 0.67
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 12/52 (23%)
Query: 146 LFVVNPDG---YVNFCTENIKSFIR---YSRQEVLGKSVYNLIHHGDHARFH 191
+ V++ +G YVN +F YS +E++G++V LI D
Sbjct: 16 IIVIDLEGNILYVN------PAFEEIFGYSAEELIGRNVLELIPEEDREEVR 61
>gnl|CDD|213756 TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor,
Bacteroides expansion family 1. This group of sigma
factors are members of the sigma-70 family (TIGR02937)
and are found primarily in the genus Bacteroides. This
family appears to have resulted from a lineage-specific
expansion as B. thetaiotaomicron VPI-5482, Bacteroides
forsythus ATCC 43037, Bacteroides fragilis YCH46 and
Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23
members, respectively. There are currentlyonly two known
members of this family outside of the Bacteroides, in
Rhodopseudomonas and Bradyrhizobium.
Length = 161
Score = 30.6 bits (70), Expect = 0.80
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 2 KCLNEKRRREQENNYIEELAEL-ISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRR 60
+CLN R ++ E Y EELAE+ S A+ L K + I++E + + L E+ R
Sbjct: 63 RCLNYLRHKQVEEKYQEELAEIEERELSEADPEEELEAK-ELEEIIEEAIEK-LPEQCRE 120
Query: 61 EQENNYIEEL 70
+ E L
Sbjct: 121 IFILSRFEGL 130
>gnl|CDD|240324 PTZ00234, PTZ00234, variable surface protein Vir12; Provisional.
Length = 433
Score = 31.1 bits (70), Expect = 1.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 6 EKRRREQENNYI----EELAELISAASFAESMSSLA 37
EK++R+ +NNY EEL S S AES S A
Sbjct: 397 EKKKRKPQNNYYDEYEEELPRYESQQSLAESQMSDA 432
Score = 31.1 bits (70), Expect = 1.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 56 EKRRREQENNYI----EELAELISAASFAESMSSLA 87
EK++R+ +NNY EEL S S AES S A
Sbjct: 397 EKKKRKPQNNYYDEYEEELPRYESQQSLAESQMSDA 432
>gnl|CDD|149939 pfam09055, Sod_Ni, Nickel-containing superoxide dismutase. Nickel
containing superoxide dismutase (NiSOD) is a
metalloenzyme containing a hexameric assembly of
right-handed 4-helix bundles of up-down-up-down topology
with an N-terminal His-Cys-X-X-Pro-Cys-Gly-X-Tyr motif
that chelates the active site Ni ions. NiSOD catalyzes
the disproportionation of superoxide to peroxide and
molecular oxygen through alternate oxidation and
reduction of Ni, protecting cells from the toxic
products of aerobic metabolism.
Length = 128
Score = 29.6 bits (67), Expect = 1.2
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 17 IEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQENNYIEELAELISA 76
I ELA A S + +A+K + ++E + + + Y EL EL
Sbjct: 35 INELAGKADAQSQNQLSRWVAIKEEHAQKVKEEILVLWTDYFKPPHLEKYP-ELHELFHK 93
Query: 77 ASFAESMSSLAVKPDKCAILQETVNQIRNI 106
A S + V P L +N+I I
Sbjct: 94 AMKLASKAKQNVDPATAEELLAAINEIAEI 123
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 30.5 bits (68), Expect = 1.8
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 20 LAELISAASFAESMSSLAVKPDKC-----AILQETVNQCLNEKRRREQENNYIEELAELI 74
++ F + +S L +C +QE VN+ L+ KR + + + I+ L E+
Sbjct: 217 FSDFFPYCGFLDDLSGLTAYMKECFERQDTYIQEVVNETLDPKRVKPETESMIDLLMEIY 276
Query: 75 SAASFAESMS 84
FA +
Sbjct: 277 KEQPFASEFT 286
>gnl|CDD|221710 pfam12685, SpoIIIAH, SpoIIIAH-like protein. Stage III sporulation
protein AH (SpoIIIAH) is a protein that is involved in
forespore engulfment. It forms a channel with SpoIIIAH
that is open on the forespore end and closed (or gated)
on the mother cell end. This allows sigma-E-directed
gene expression in the mother-cell compartment of the
sporangium to trigger the activation of sigma-G
forespore-specific gene expression by a pathway of
intercellular signaling. This family of proteins is
found in bacteria, archaea and eukaryotes and so must
have a wider function that in sporulation. Proteins in
this family are typically between 174 and 223 amino
acids in length.
Length = 141
Score = 29.1 bits (66), Expect = 1.8
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 26/116 (22%)
Query: 10 REQENNY-IEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQENNYIE 68
REQ+ + IE L E+I+ + +S K +E ++ L E+E IE
Sbjct: 40 REQKRSKQIETLKEIIANEN-----ASAEEK-------KEAQDKLLELTELAEKEMA-IE 86
Query: 69 ELAELISAASFAESMSSL-------AVKPDKCAILQETVNQIRNIKQQETSSDAVQ 117
L + A F +++ + VK ++ + QI +I +ET A
Sbjct: 87 NL---LKAKGFEDAVVFIDDDKVDVVVKAEE--LSDAEAAQIIDIVMRETGVSADN 137
>gnl|CDD|219110 pfam06624, RAMP4, Ribosome associated membrane protein RAMP4. This
family consists of several ribosome associated membrane
protein RAMP4 (or SERP1) sequences. Stabilisation of
membrane proteins in response to stress involves the
concerted action of a rescue unit in the ER membrane
comprised of SERP1/RAMP4, other components of the
translocon, and molecular chaperones in the ER.
Length = 63
Score = 27.3 bits (61), Expect = 2.2
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 101 NQIRNIKQQETSSDAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLFVV 149
Q + ++ S + ++G V S +GP LL L F+FVV
Sbjct: 4 KQRMKVANEKFSKNITKRGNVPKSLKKKEEKYPVGPWLL-GL--FIFVV 49
>gnl|CDD|224511 COG1595, RpoE, DNA-directed RNA polymerase specialized sigma
subunit, sigma24 homolog [Transcription].
Length = 182
Score = 28.9 bits (65), Expect = 3.2
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 2 KCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRRE 61
++ R+R++ +EE L A A ++ L + ++ L+ + + L ++R
Sbjct: 77 LAIDRLRKRKRRRARVEEADLLPEEADPAPDLAELLLAEEELERLRRALAR-LPPRQREA 135
Query: 62 QENNYIEEL 70
Y+E L
Sbjct: 136 FLLRYLEGL 144
Score = 27.4 bits (61), Expect = 9.0
Identities = 10/55 (18%), Positives = 25/55 (45%)
Query: 49 TVNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQI 103
N ++ R+R++ +EE L A A ++ L + ++ L+ + ++
Sbjct: 74 ARNLAIDRLRKRKRRRARVEEADLLPEEADPAPDLAELLLAEEELERLRRALARL 128
>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit,
putative. This family consists of proteins restricted
to and found as paralogous pairs (typically close
together) in species of Pyrococcus, a hyperthermophilic
archaeal genus. Members are always found close to other
genes of threonine biosynthesis and appear to represent
the Pyrococcal form of aspartate kinase. Alignment to
aspartokinase III from E. coli shows that 300 N-terminal
and 20 C-terminal amino acids are homologous, but the
form in Pyrococcus lacks ~ 100 amino acids in between
[Amino acid biosynthesis, Aspartate family].
Length = 327
Score = 29.0 bits (65), Expect = 4.4
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 26 AASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQE-NNYIEELAELISAASFAESMS 84
+ E L V + IL + + N ++ +YI L E +SA FAE ++
Sbjct: 61 EEIYEEFAKELGVDLN---ILSPYLKELFNPPDLPKEALRDYILSLGERLSAVIFAEGIN 117
Query: 85 SLAVKP 90
V P
Sbjct: 118 GKVVDP 123
Score = 28.2 bits (63), Expect = 6.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 15 NYIEELAELISAASFAESMSSLAVKP 40
+YI L E +SA FAE ++ V P
Sbjct: 98 DYILSLGERLSAVIFAEGINGKVVDP 123
>gnl|CDD|183097 PRK11359, PRK11359, cyclic-di-GMP phosphodiesterase; Provisional.
Length = 799
Score = 29.0 bits (65), Expect = 5.5
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 137 LLLEALEGFLF---VVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLI------HHGDH 187
+ ALE + ++N + V F + Y R+EV+G ++ LI H ++
Sbjct: 13 IFFPALEQNMMGAVLINENDEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEY 72
Query: 188 ARFHN 192
R HN
Sbjct: 73 IR-HN 76
>gnl|CDD|132764 cd07350, NR_LBD_Dax1, The ligand binding domain of DAX1 protein, a
nuclear receptor lacking DNA binding domain. The ligand
binding domain of the DAX1 protein: DAX1
(dosage-sensitive sex reversal adrenal hypoplasia
congenita critical region on chromosome X gene 1) is a
nuclear receptor with a typical ligand binding domain,
but lacks the DNA binding domain. DAX1 plays an
important role in the normal development of several
hormone-producing tissues. Duplications of the region of
the X chromosome containing DAX1 cause dosage sensitive
sex reversal. DAX1 acts as a global repressor of many
nuclear receptors, including SF-1, LRH-1, ERR, ER, AR
and PR. DAX1 can form homodimer and heterodimerizes with
its alternatively spliced isoform DAX1A and other
nuclear receptors such as SHP, ERalpha and SF-1.
Length = 232
Score = 28.2 bits (63), Expect = 6.1
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 21/103 (20%)
Query: 107 KQQETSSDAVQQGEVSSSKPTVITNEVLGPLLLEALEGFLF------------------- 147
+ TS + + P + + + A++ FL
Sbjct: 94 RPPPTSGAEPGEPQALPQMPQAEASHLPSAADIRAIKAFLAKCWSLDISTKEYAYLKGTV 153
Query: 148 VVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARF 190
+ NPD C + I+ ++Q L + V +IH GD ARF
Sbjct: 154 LFNPDLPGLQCVQYIQGLQWEAQQ-ALNEHV-RMIHRGDQARF 194
>gnl|CDD|217365 pfam03097, BRO1, BRO1-like domain. This domain is found in a
number proteins including Rhophilin and BRO1. It is
known to have a role in endosomal targeting. ESCRT-III
subunit Snf7 binds to a conserved hydrophobic patch in
the BRO1 domain that is required for protein complex
formation and for the protein-sorting function of BRO1.
Length = 374
Score = 28.4 bits (64), Expect = 6.4
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 11 EQENNYIEELAELISAASFAES---MSSLAVKPDKCAILQETVNQCLNEKRRREQENNYI 67
E++ Y E +A L A S + ++ L+ + L+ ++ + + E++N++I
Sbjct: 250 EEKKKYGEAIARLQKALSALKEALKLAPLSSSSELLEDLKGLKDRIKEKLKEAEKDNDFI 309
Query: 68 EELAELISAASFAESMSSLAVKP 90
E+ S + VKP
Sbjct: 310 -YHEEVPDEVSLPPIKPAPLVKP 331
>gnl|CDD|165258 PHA02948, PHA02948, serine protease inhibitor-like protein;
Provisional.
Length = 373
Score = 28.1 bits (62), Expect = 9.4
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 78 SFAESMSSLAVKPDKCAILQETVNQIRNIKQ-QETSSDAVQQGEVSSSKPTVITNEVLGP 136
S AE M+ PD + T + + K Q D +QG V+ + ++ P
Sbjct: 284 SIAEMMAPSMFNPDNASFKHMTRDPLYIYKMFQNAKIDVDEQGTVAEASTIMVATARSSP 343
Query: 137 LLLEALEGFLFVVNPD--GYVNF 157
LE F+F++ D G++ F
Sbjct: 344 EELEFNTPFVFIIRHDITGFILF 366
>gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase.
Length = 386
Score = 27.9 bits (62), Expect = 9.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 155 VNFCTENIKSFIRYSRQEVLGKSV 178
V +C+EN K I +S EV GK++
Sbjct: 121 VKYCSENNKRLIHFSTCEVYGKTI 144
>gnl|CDD|106506 PRK13560, PRK13560, hypothetical protein; Provisional.
Length = 807
Score = 28.1 bits (62), Expect = 9.7
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 138 LLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNL 181
LL+ + F + D V C + + R+E++G S+++
Sbjct: 209 LLDNIADPAFWKDEDAKVFGCNDAACLACGFRREEIIGMSIHDF 252
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.128 0.369
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,341,207
Number of extensions: 1672345
Number of successful extensions: 1544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1533
Number of HSP's successfully gapped: 38
Length of query: 383
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 284
Effective length of database: 6,546,556
Effective search space: 1859221904
Effective search space used: 1859221904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)