RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7682
(383 letters)
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 47.2 bits (112), Expect = 5e-08
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 50 VNQCLNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQ 109
+ E+ RR + + ELA LI A +++S+ P K ++ IR+++Q
Sbjct: 4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSA---APSKATTVEAACRYIRHLQQN 60
Query: 110 ETS 112
++
Sbjct: 61 GST 63
Score = 38.7 bits (90), Expect = 5e-05
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 17/72 (23%)
Query: 4 LNEKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQE 63
E+ RR + + ELA LI A +++S+ P K ++
Sbjct: 8 HAEQARRNRLAVALHELASLIPAEWKQQNVSA---APSKATTVEAAC------------- 51
Query: 64 NNYIEELAELIS 75
YI L + S
Sbjct: 52 -RYIRHLQQNGS 62
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas
palustris [TaxId: 1076]}
Length = 114
Score = 48.3 bits (115), Expect = 6e-08
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 144 GFLFVVN-PDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSSHQ-V 201
G+LFVV+ D + + N++ +R +L + + + AR + L +
Sbjct: 18 GYLFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHALHGGDPAAI 77
Query: 202 NAWTSDSGGQAGKRP 216
N D G+R
Sbjct: 78 NPIRLDVVTPDGERA 92
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 43.6 bits (103), Expect = 1e-06
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE 110
E+RRR++ NN+I +L+++I +S + S K IL + + I+ ++Q
Sbjct: 13 ERRRRDKINNWIVQLSKIIPDSSMESTKS----GQSKGGILSKASDYIQELRQSN 63
Score = 37.1 bits (86), Expect = 2e-04
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 6 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVN--QCLNEKRRR 60
E+RRR++ NN+I +L+++I +S + S K IL + + Q L + R
Sbjct: 13 ERRRRDKINNWIVQLSKIIPDSSMESTKS----GQSKGGILSKASDYIQELRQSNHR 65
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 38.0 bits (88), Expect = 1e-04
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE 110
EKR R N+ I EL +L + K +K A+L++ ++ IR ++
Sbjct: 14 EKRYRSSINDKIIELKDL---------VVGTEAKLNKSAVLRKAIDYIRFLQHSN 59
Score = 35.7 bits (82), Expect = 0.001
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 6 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETV---NQCLNEKRRREQ 62
EKR R N+ I EL +L + K +K A+L++ + + ++ +Q
Sbjct: 14 EKRYRSSINDKIIELKDL---------VVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64
Query: 63 ENNYIEELAE 72
EN +
Sbjct: 65 ENLSLRTAVH 74
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr
{Rhodospirillum centenum [TaxId: 34018]}
Length = 110
Score = 38.5 bits (89), Expect = 1e-04
Identities = 7/60 (11%), Positives = 20/60 (33%)
Query: 132 EVLGPLLLEALEGFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFH 191
+ +G +AL V+ G ++ + V+G++ + + +
Sbjct: 2 DGMGTAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAF 61
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator
1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 109
Score = 38.5 bits (89), Expect = 2e-04
Identities = 5/53 (9%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 142 LEGFLFVVNPDGYVNFCTENIKSFIRY-SRQEVLGKSVYNLIHHGDHARFHNC 193
+E F+ + G + + ++++ K +Y +
Sbjct: 1 VESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYAR 53
Score = 30.4 bits (68), Expect = 0.13
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 283 IEQFTMKLDRSGTIIGMDTSGVS 305
+E F K D +G II +DTS +
Sbjct: 1 VESFMTKQDTTGKIISIDTSSLR 23
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 37.9 bits (88), Expect = 2e-04
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE 110
E++RR+ + L + + S K + IL + I+ ++++
Sbjct: 10 ERKRRDHIKDSFHSLRDSV--------PSLQGEKASRAQILDKATEYIQYMRRKN 56
Score = 34.8 bits (80), Expect = 0.002
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 13/64 (20%)
Query: 6 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVN-----QCLNEKRRR 60
E++RR+ + L + + S K + IL + + N ++
Sbjct: 10 ERKRRDHIKDSFHSLRDSV--------PSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61
Query: 61 EQEN 64
+ ++
Sbjct: 62 DIDD 65
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 36.0 bits (83), Expect = 7e-04
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE 110
EK RR +E+L L+ + + ++L + I+ ++ +
Sbjct: 9 EKNRRAHLRLSLEKLKGLVPLGPDSS-------RHTTLSLLTKAKLHIKKLEDSD 56
Score = 34.5 bits (79), Expect = 0.003
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 6 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQENN 65
EK RR +E+L L+ + + ++L + + + +
Sbjct: 9 EKNRRAHLRLSLEKLKGLVPLGPDSS-------RHTTLSLLTKAKLHIKKLEDSDRKAVH 61
Query: 66 YIEEL 70
I++L
Sbjct: 62 QIDQL 66
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 34.5 bits (79), Expect = 0.003
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 56 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE 110
E++RR + L + I K K IL++ I +++ +E
Sbjct: 14 ERQRRNELKRSFFALRDQI-------PELENNEKAPKVVILKKATAYILSVQAEE 61
Score = 31.8 bits (72), Expect = 0.023
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 6 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAI-----LQETVNQCLNEKRRR 60
E++RR + L + I E + + K A +Q + ++E+
Sbjct: 14 ERQRRNELKRSFFALRDQIPELENNEKAPKVVIL--KKATAYILSVQAEEQKLISEEDLL 71
Query: 61 EQENNYI-EELAEL 73
+ + +L +L
Sbjct: 72 RKRREQLKHKLEQL 85
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 127
Score = 32.5 bits (74), Expect = 0.027
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 144 GFLFVVN-PDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCL 194
G + V+ PD ++ + N + S +++LG+++ + + L
Sbjct: 27 GLVVVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQIDPIQSRL 78
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 113
Score = 31.8 bits (72), Expect = 0.045
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 144 GFLFVVNPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSSHQVNA 203
G L + DG V +ENI++ + + + L + N+
Sbjct: 23 GALVTLRADGMVLAASENIQALLGFVASP-GSYLTQEQVGPEVLRMLEEGLTGNGPWSNS 81
Query: 204 WTSDSGGQA 212
+ G
Sbjct: 82 VETRIGEHL 90
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 30.5 bits (69), Expect = 0.045
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 60 REQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQIRNIKQQE 110
R N+ I EL +L+ K K +L++ ++ I+ ++Q
Sbjct: 1 RSSINDKIIELKDLVM---------GTDAKMHKSGVLRKAIDYIKYLQQVN 42
Score = 25.1 bits (55), Expect = 3.3
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 10 REQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQE 63
R N+ I EL +L+ K K +L++ ++ + ++ +
Sbjct: 1 RSSINDKIIELKDLVM---------GTDAKMHKSGVLRKAID-YIKYLQQVNHK 44
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 29.8 bits (67), Expect = 0.068
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 22/69 (31%)
Query: 6 EKRRREQENNYIEELAELISAASFAESMSSLAVKPDKCAILQETVNQCLNEKRRREQENN 65
E+RR + N E L S+ + K IL+ +
Sbjct: 20 ERRRLSKVNEAFETLKRSTSSNP--------NQRLPKVEILRNAI--------------R 57
Query: 66 YIEELAELI 74
YIE L L+
Sbjct: 58 YIEGLQALL 66
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus
radiodurans [TaxId: 1299]}
Length = 127
Score = 31.4 bits (71), Expect = 0.074
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 144 GFLFVVN-PDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFH 191
G L + G V + N +F+ + G+++ L+ A
Sbjct: 36 GALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQA 84
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 27.8 bits (61), Expect = 0.82
Identities = 11/128 (8%), Positives = 29/128 (22%), Gaps = 27/128 (21%)
Query: 146 LFVVNP-DGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSSHQVNAW 204
+F V+ + + + YS Q+++G+ + D + +
Sbjct: 11 IFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALS-----EEHME 65
Query: 205 TSDSGGQAGKRPSLTASTPNRTFNIRLLISSTHLTAGLSRAGGENGQDDSGDVSSEGGPC 264
S + + + + E C
Sbjct: 66 ADGHAAVVFGTVVDIISRSGEKIPVSVWMKR---------------------MRQERRLC 104
Query: 265 LMCVARRI 272
+ V +
Sbjct: 105 CVVVLEPV 112
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD,
receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Length = 140
Score = 27.3 bits (60), Expect = 2.0
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 38 VKPDKCAILQETVNQCLNEKRRREQENNYIEELAELIS 75
KP L ++ + EKRR EN + AE S
Sbjct: 100 AKPFAADRLVQSARRAE-EKRRLVMENRSLRRAAEAAS 136
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1
domain {Green algae (Chlamydomonas reinhardtii) [TaxId:
3055]}
Length = 109
Score = 26.4 bits (57), Expect = 3.3
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 147 FVV----NPDGYVNFCTENIKSFIRYSRQEVLGKSVYNLIHHGDHARFHNCLVPSSHQVN 202
FVV PD + + +E + Y EVLG + L G + + + +
Sbjct: 6 FVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGE 65
Query: 203 AW 204
A
Sbjct: 66 AC 67
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 26.5 bits (57), Expect = 5.3
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 147 FVVNPDGYVNFCTENIKSFIRY--------SRQEVLGKSVYNLIHHGDHARFHNCLVPSS 198
F + +GYVN K +R+ L Y + A+ L +
Sbjct: 26 FDMAKEGYVNLLPVQHKRSRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKA 85
Query: 199 HQV 201
V
Sbjct: 86 TAV 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.128 0.369
Gapped
Lambda K H
0.267 0.0617 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,285,956
Number of extensions: 54817
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 26
Length of query: 383
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,213,086
Effective search space: 359073456
Effective search space used: 359073456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)