BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7683
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 124/201 (61%), Positives = 153/201 (76%)
Query: 309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
V F+PLALLLD+SLEGE +LV + V DPS NDEGITALHNA+CAGH +IV+FLVQF
Sbjct: 33 VKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXXX 428
G +VNA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA K
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 152
Query: 429 XXXXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK 488
LY VQEK+GI+N G +YAL+DYE N DEL K G+C+ ++ + DE+E EWWW++
Sbjct: 153 QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR 212
Query: 489 LNNKEGYVPRNLLGLYPRVQP 509
LN+KEGYVPRNLLGLYPR++P
Sbjct: 213 LNDKEGYVPRNLLGLYPRIKP 233
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 272 bits (695), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 122/197 (61%), Positives = 150/197 (76%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PLALLLD+SLEGE +LV + V DPS NDEGITALHNA+CAGH +IV+FLVQFG +V
Sbjct: 37 PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXXXXXXX 432
NA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA K
Sbjct: 97 NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156
Query: 433 XLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK 492
LY VQEK+GI+N G +YAL+DYE N DEL K G+C+ ++ + DE+E EWWW++LN+K
Sbjct: 157 FLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Query: 493 EGYVPRNLLGLYPRVQP 509
EGYVPRNLLGLYPR++P
Sbjct: 217 EGYVPRNLLGLYPRIKP 233
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 136/203 (66%)
Query: 307 RCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLV 366
R +PL LLLDA+L GELE+V + + + DPS N+EGITALHNAIC ++ IV FL+
Sbjct: 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLI 74
Query: 367 QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXX 426
G +VN+ DS GW PLHCAASCN+ + LV+HGA IFATT SD TA K
Sbjct: 75 TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREG 134
Query: 427 XXXXXXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW 486
L V++ +G++N+GAVYAL+DY A DELSF+ GE + VLR+ E +WWW
Sbjct: 135 YADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWW 194
Query: 487 SKLNNKEGYVPRNLLGLYPRVQP 509
+ L+ +EGYVPRN GL+PRV+P
Sbjct: 195 AALHGQEGYVPRNYFGLFPRVKP 217
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 59/98 (60%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
FD A+ L A G+ E V++ D + AN +G+TALH A + D+V+FLV+ G
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFAT 408
++N D++GW+PLH AASC L + +L+ GA + A
Sbjct: 98 NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 318 LDASLEGELELVMKTARLVKDPSAAND-----EGITALHNAICAGHFDIVRFLVQFGCDV 372
++A+ + E ++++ AR + ND G TALH A G+ ++++ L+Q DV
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVE 400
N +D DGW PLH AA R LVE
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVE 253
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 310 SFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG 369
+ D L L A ++ +++V + + ++EG LH A G+ DI +L+ G
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
Query: 370 CDVNAQDSDGWMPL 383
V A +S+G PL
Sbjct: 130 AHVGAVNSEGDTPL 143
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 69.7 bits (169), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G+LE+V + D +A++ GIT LH A GH +IV L++ G DV
Sbjct: 42 PLHL---AAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV 98
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
NA D GW PLH AA L +V L++HGA + A
Sbjct: 99 NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA 133
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 52/91 (57%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A +D G+T LH A G +IV L++ G DVNA D
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
S G PLH AA +L +V L++HGA + A
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNA 100
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFAT 408
L A AG D VR L+ G DVNA D +G PLH AA+ L +V L+++GA + A+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ +G LE+V + D +A + G T LH A +G +IV L++ G DV
Sbjct: 75 PLHL---AAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Query: 373 NAQDSDG 379
NAQD+ G
Sbjct: 132 NAQDALG 138
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 68.6 bits (166), Expect = 8e-12, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
+ PL L A+ G LE+V + D +A++ GIT LH A GH +IV L++ G
Sbjct: 48 YTPLHL---AASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
DVNA D+DG PLH AA +L +V L++HGA + A
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 55/97 (56%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A +++G T LH A GH +IV L++ G DVNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
G PLH AA+ +L +V L++HGA + A + H
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGH 114
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D +A +++G T LH A GH +IV L++ G DV
Sbjct: 83 PLHL---AAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 140 NAQDKFG 146
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
+ PL L A+ EG LE+V + D +A + +G T LH A GH +IV L++ G
Sbjct: 36 YTPLHL---AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
DVNA+D DG+ PLH AA +L +V L++ GA + A
Sbjct: 93 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A + +G T LH A GH +IV L++ G DVNA+D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
DG+ PLH AA +L +V L++ GA + A
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
+ PL L A+ EG LE+V + D +A + +G T LH A GH +IV L++ G
Sbjct: 69 YTPLHL---AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 371 DVNAQDSDGWMPLHCA 386
DVNAQD G P A
Sbjct: 126 DVNAQDKFGKTPFDLA 141
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
+ PL L A+ EG LE+V + D +A + +G T LH A GH +IV L++ G
Sbjct: 48 YTPLHL---AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
DVNA+D DG+ PLH AA +L +V L++ GA + A
Sbjct: 105 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 141
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A + +G T LH A GH +IV L++ G DVNA+D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
DG+ PLH AA +L +V L++ GA + A
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNA 108
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
+ PL L A+ EG LE+V + D +A + +G T LH A GH +IV L++ G
Sbjct: 81 YTPLHL---AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 371 DVNAQDSDG 379
DVNAQD G
Sbjct: 138 DVNAQDKFG 146
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
+ PL L A+ EG LE+V + D +A + +G T LH A GH +IV L++ G
Sbjct: 36 YTPLHL---AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
DVNA+D DG+ PLH AA +L +V L++ GA + A
Sbjct: 93 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A + +G T LH A GH +IV L++ G DVNA+D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
DG+ PLH AA +L +V L++ GA + A
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
+ PL L A+ EG LE+V + D +A + +G T LH A GH +IV L++ G
Sbjct: 69 YTPLHL---AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 371 DVNAQDSDGWMPLHCAASCNN 391
DVNAQD G P A N
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGN 146
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A +D+G T LH A GH +IV L++ G DVNA+D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
+DGW PLH AA +L +V L+++GA + A
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNA 108
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G E+V + D +A + +G T LH A GH +IV L+++G DV
Sbjct: 50 PLHL---AAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
NAQD+ G PLH AA +L +V L++HGA + A
Sbjct: 107 NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L D G LE+V + D +A + G+T LH A GH +IV L++ G DV
Sbjct: 83 PLHLAAD---NGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADV 139
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 140 NAQDKFG 146
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L+++ G LE++ + D +A++ G T LH A GH +IV L+++G DV
Sbjct: 50 PLHLVVN---NGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
NA D G+ PLH AA +L +V L+++GA
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 317 LLDASLEG---ELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
LL+A+ G E+ ++M D +A + GIT LH + GH +I+ L+++ DVN
Sbjct: 18 LLEAARAGQDDEVRILMANG---ADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
A D GW PLH AA +L +V L+++GA + A + +
Sbjct: 75 ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGY 114
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D +A + +G T LH A GH +IV L+++G DV
Sbjct: 83 PLHL---AAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 140 NAQDKFG 146
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 65.5 bits (158), Expect = 8e-11, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
A+ G LE+V R D +A + G T LH A GH +IV L+++G DVNA+D+ G
Sbjct: 42 AAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATG 101
Query: 380 WMPLHCAASCNNLAMVRFLVEHGA 403
PL+ AA +L +V L++HGA
Sbjct: 102 ITPLYLAAYWGHLEIVEVLLKHGA 125
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 317 LLDASLEG---ELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
LL+A+ G E+ ++M D +A + G T LH A GH +IV L++ G DVN
Sbjct: 6 LLEAARAGQDDEVRILMANG---ADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
A D++G PLH AAS +L +V L+++GA
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 316 LLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
L L ASL G LE+V + D +A + GIT L+ A GH +IV L++ G DVNAQ
Sbjct: 72 LHLAASL-GHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQ 130
Query: 376 DSDG 379
D G
Sbjct: 131 DKFG 134
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 65.1 bits (157), Expect = 9e-11, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D A++ G T LH A GH +IV L++ G DV
Sbjct: 50 PLHL---AAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
NA DSDG PLH AA L +V L++HGA + A
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +AA++ G T LH A +GH +IV L++ G DV+A D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
G+ PLH AA +L +V L+++GA + A
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNA 108
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 356 AGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFAT 408
AG D VR L+ G DVNA D+ G PLH AA +L +V L++HGA + A+
Sbjct: 24 AGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
+ PL L A+ G LE+V + D +A + +G+T LH A G+ +IV L++ G
Sbjct: 81 YTPLHL---AAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Query: 371 DVNAQDSDG 379
DVNAQD G
Sbjct: 138 DVNAQDKFG 146
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
V + PL L A+ G LE+V + D +A + G+T LH A GH ++V L++
Sbjct: 46 VGWTPLHL---AAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKN 102
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
G DVNA D +G+ PLH AA+ +L +V L++HGA
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 54/95 (56%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A++ G T LH A GH +IV L++ G DVNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHS 411
S G PLH AA +L +V L+++GA + A H+
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHN 112
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L D G LE+V + D +A + G T LH A GH +IV L++ G DV
Sbjct: 83 PLHLAAD---RGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV 139
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 140 NAQDKFG 146
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+++G LE+V + D +AA+ G T LH A GH +IV L++ G DV
Sbjct: 50 PLHL---AAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
NA D+ G+ PLH AA +L +V L+++GA + A
Sbjct: 107 NATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 52/92 (56%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A +D G T LH A GH +IV L++ G DVNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFAT 408
G PLH AA +L +V L+++GA + AT
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNAT 109
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+L G LE+V + D +A + G T LH A AGH +IV L+++G DV
Sbjct: 83 PLHL---AALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 140 NAQDKFG 146
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 64.3 bits (155), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A +D G+T LH A GH +IV L++ G DVNA D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
S G PLH AA+ +L +V L+E+GA + A
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D +A++ G T LH A GH +IV L+++G DV
Sbjct: 50 PLHL---AAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 107 NAQDKFG 113
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFAT 408
L A AG D VR L+ G DVNA D G PLH AA +L +V L++HGA + A+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A++ G LE+V + D AA+ G T LH A GH +IV L+++G DV
Sbjct: 50 PLHL---AAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
NA D G PLH AA +L +V L+++GA
Sbjct: 107 NAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A ++ G+T LH A +GH +IV L++ G DV+A D
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
G+ PLH AA +L +V L+++GA
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGA 104
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
F PL L A++ G LE+V + D +A + G T LH A GH +IV L+++G
Sbjct: 81 FTPLHL---AAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 371 DVNAQDSDG 379
DVNAQD G
Sbjct: 138 DVNAQDKFG 146
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A +++G+T LH A GH +IV L+++G DVNA+D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
+ G PLH AA +L +V L++HGA + A
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNA 108
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 38/68 (55%)
Query: 312 DPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCD 371
D L L A+ G LE+V + D +A ++ GIT LH A GH +IV L++ G D
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
Query: 372 VNAQDSDG 379
VNAQD G
Sbjct: 106 VNAQDKFG 113
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 52/87 (59%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A +D G+T LH A GH +IV L++ G DVNA+D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
G PLH AA+ +L +V L+E+GA
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D +A + G T LH A GH +IV L+++G DV
Sbjct: 50 PLHL---AAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 107 NAQDKFG 113
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V D +A + G T LH A GH ++V+ L++ G DV
Sbjct: 5 PLHL---AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
NA+D +G PLH AA +L +V+ L+E GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
G T LH A GH ++V+ L++ G DVNA+D +G PLH AA +L +V+ L+E GA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 406 FA 407
A
Sbjct: 62 NA 63
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 62.4 bits (150), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V D +A + G T LH A GH ++V+ L++ G DV
Sbjct: 5 PLHL---AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
NA+D +G PLH AA +L +V+ L+E GA + A
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 96
Score = 62.4 bits (150), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V D +A + G T LH A GH ++V+ L++ G DV
Sbjct: 38 PLHL---AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
NA+D +G PLH AA +L +V+ L+E GA
Sbjct: 95 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
G T LH A GH ++V+ L++ G DVNA+D +G PLH AA +L +V+ L+E GA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 406 FA 407
A
Sbjct: 62 NA 63
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D +A ++ G T LH A GH +IV L++ G DV
Sbjct: 50 PLHL---AAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
NA+D +G+ PLH AA +L +V L+++GA + A
Sbjct: 107 NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 317 LLDASLEG---ELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
LL+A+ G E+ ++M D +A + G T LH A GH +IV L+++G DVN
Sbjct: 18 LLEAARAGQDDEVRILMANG---ADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
A D+ G PLH AA +L +V L++HGA + A
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNA 108
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L D G LE+V + D +A + EG T LH A GH +IV L+++G DV
Sbjct: 83 PLHLAAD---NGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 140 NAQDKFG 146
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 62.0 bits (149), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 53/91 (58%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A +D G+T LH A GH +IV L++ G DVNA D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
G PLH AA+ +L +V L+E+GA + A
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFAT 408
L A AG D VR L+ G DVNA D G PLH AA +L +V L++HGA + A+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D +A++ G T LH A GH +IV L+++G DV
Sbjct: 50 PLHL---AAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 107 NAQDKFG 113
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 62.0 bits (149), Expect = 7e-10, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
A+ EG E+V D +A + +G T LH A GH +IV+ L+ G DVNA+DSDG
Sbjct: 44 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 103
Query: 380 WMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHET 415
PLH AA + +V+ L+ GA + T+ SD T
Sbjct: 104 RTPLHYAAKEGHKEIVKLLISKGADV-NTSDSDGRT 138
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
L++A+ G + V D +A++ +G T LH A GH +IV+ L+ G DVNA+D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
SDG PLH AA + +V+ L+ GA + A
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNA 98
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 43/84 (51%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
A+ EG E+V D +A + +G T LH A GH +IV+ L+ G DVN DSDG
Sbjct: 77 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDG 136
Query: 380 WMPLHCAASCNNLAMVRFLVEHGA 403
PL A N +V+ L + G
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
DP+A + +G T LH A GH ++V+ L+ G D NA+DSDG PLH AA + +V+
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 398 LVEHGA 403
L+ GA
Sbjct: 122 LLSQGA 127
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D +A++ +G T LH A GH ++V+ L+ G D NA+DSDG PLH AA + +V+
Sbjct: 29 DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 88
Query: 398 LVEHGA 403
L+ GA
Sbjct: 89 LLSQGA 94
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
DP+A + +G T LH A GH ++V+ L+ G D N DSDG PL A N +V+
Sbjct: 95 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 398 LVEHGACI 405
L + G +
Sbjct: 155 LEKQGGWL 162
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 324 GELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPL 383
G LE+V + D +A + G+T LH A GH +IV L++ G DVNA DS G+ PL
Sbjct: 58 GHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPL 117
Query: 384 HCAASCNNLAMVRFLVEHGACIFA 407
H AA +L +V L+++GA + A
Sbjct: 118 HLAAKRGHLEIVEVLLKNGADVNA 141
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 53/92 (57%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A + G T LH A GH +IV L++ G DVNA+D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFAT 408
S G PLH AA +L +V L+++GA + A+
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNAS 109
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D +A++ G T LH A GH +IV L++ G DV
Sbjct: 83 PLHL---AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 140 NAQDKFG 146
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
V + PL L A+ G LE+V + D +A + G T LH A GH +IV L++
Sbjct: 46 VGWTPLHL---AAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
G DVNA+D +G PLH AA+ +L +V L+++GA
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 317 LLDASLEG---ELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
LL+A+ G E+ ++M D +AA+ G T LH A GH +IV L++ G DVN
Sbjct: 18 LLEAARAGRDDEVRILMANG---ADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
A D+ G PLH AA +L +V L+++GA
Sbjct: 75 AYDTLGSTPLHLAAHFGHLEIVEVLLKNGA 104
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 324 GELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
G LE+V + D +A +D GIT LH A GH +IV L+++G DVNAQD G
Sbjct: 91 GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D +A + G T LH A GH +IV L+++G DV
Sbjct: 50 PLHL---AARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
NA D+ G PLH AA +L +V L+++GA + A
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A + G T LH A GH +IV L++ G DVNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
G PLH AA +L +V L+++GA + A
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNA 108
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D +A + G T LH A GH +IV L+++G DV
Sbjct: 83 PLHL---AAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 140 NAQDKFG 146
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
L A AG D VR L+ G DVNA+D+ G PLH AA +L +V L+++GA + A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 410 HS 411
S
Sbjct: 78 FS 79
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 334 RLVKDPSAA---NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN 390
R++ D S A + + TALH A AGH +IV FL+Q G VN +D GW PLH AAS
Sbjct: 25 RILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84
Query: 391 NLAMVRFLVEHGACIFAT 408
+V+ L+ GA + A
Sbjct: 85 RDEIVKALLVKGAHVNAV 102
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+P A + TA+H A G+ +V L+ + N QD++G PLH A + +F
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 398 LVEHGACIF 406
LV GA I+
Sbjct: 191 LVTQGASIY 199
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
+D G + LH A AG +IV+ L+ G VNA + +G PLH AAS N + L+E G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 403 ACIFATTHSD----HETAA 417
A A H D H AA
Sbjct: 130 ANPDAKDHYDATAMHRAAA 148
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 333 ARLVKDP--SAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN 390
A LVK +A N G T LH A +I L++ G + +A+D +H AA+
Sbjct: 91 ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150
Query: 391 NLAMVRFLVEHGA 403
NL MV L+ + A
Sbjct: 151 NLKMVHILLFYKA 163
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A + G+T LH A GH +IV L++ G DVNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
G PLH AA +L +V L++HGA
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGA 104
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D +A + G T LH A GH +IV L++ G DV
Sbjct: 50 PLHL---AATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
NA D+ G PLH AA +L +V L++HGA
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+L G LE+V + D +A + G T LH A GH +IV L++ G DV
Sbjct: 83 PLHL---AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 140 NAQDKFG 146
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 37/61 (60%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
TALH A AGH +IV FL+Q G VN +D GW PLH AAS +V+ L+ GA + A
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 408 T 408
Sbjct: 103 V 103
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
+D G + LH A AG +IV+ L+ G VNA + +G PLH AAS N + L+E G
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 130
Query: 403 A 403
A
Sbjct: 131 A 131
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+P A + TA+H A G+ ++ L+ + N QD++G PLH A + +
Sbjct: 132 NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKL 191
Query: 398 LVEHGACIF 406
LV GA I+
Sbjct: 192 LVSQGASIY 200
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 340 SAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV 399
+A N G T LH A +I L++ G + +A+D +H AA+ NL M+ L+
Sbjct: 101 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL 160
Query: 400 EHGA 403
+ A
Sbjct: 161 YYKA 164
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 334 RLVKDPSAA---NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN 390
R++ D S A + + TALH A AGH +IV FL+Q G VN +D GW PLH AAS
Sbjct: 25 RILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84
Query: 391 NLAMVRFLVEHGACIFAT 408
+V+ L+ GA + A
Sbjct: 85 XDEIVKALLVKGAHVNAV 102
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+P A + TA+H A G+ +V L+ + N QD++G PLH A + +F
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 398 LVEHGACIF 406
LV GA I+
Sbjct: 191 LVTQGASIY 199
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 333 ARLVKDP--SAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN 390
A LVK +A N G T LH A +I L++ G + +A+D +H AA+
Sbjct: 91 ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150
Query: 391 NLAMVRFLVEHGA 403
NL MV L+ + A
Sbjct: 151 NLKMVHILLFYKA 163
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 37/61 (60%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
TALH A AGH +IV FL+Q G VN +D GW PLH AAS +V+ L+ GA + A
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 408 T 408
Sbjct: 102 V 102
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
+D G + LH A AG +IV+ L+ G VNA + +G PLH AAS N + L+E G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 403 A 403
A
Sbjct: 130 A 130
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+P A + TA+H A G+ ++ L+ + N QD++G PLH A + +
Sbjct: 131 NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKL 190
Query: 398 LVEHGACIF 406
LV GA I+
Sbjct: 191 LVSQGASIY 199
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 340 SAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV 399
+A N G T LH A +I L++ G + +A+D +H AA+ NL M+ L+
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL 159
Query: 400 EHGA 403
+ A
Sbjct: 160 YYKA 163
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
L++A+ G + V D +A++ +G T LH+A GH ++V+ L+ G DVNA+D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
SDG PLH AA + +V+ L+ GA + A
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNA 98
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
A+ G E+V D +A + +G T LH+A GH ++V+ L+ G DVNA+DSDG
Sbjct: 44 AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 103
Query: 380 WMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHET 415
PLH AA + +V+ L+ GA + T+ SD T
Sbjct: 104 RTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRT 138
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 43/84 (51%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
A+ G E+V D +A + +G T LH+A GH ++V+ L+ G DVN DSDG
Sbjct: 77 AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDG 136
Query: 380 WMPLHCAASCNNLAMVRFLVEHGA 403
PL A N +V+ L + G
Sbjct: 137 RTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D +A + G T LH A GH +IV L++ G DV
Sbjct: 50 PLHL---AATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
NA D+ G PLH AA +L +V L++HGA
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A + G+T LH A GH +IV L++ G DVNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
G PLH AA +L +V L++HGA
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGA 104
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+L G LE+V + D +A + G T LH A GH +IV L++ G DV
Sbjct: 83 PLHL---AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 140 NAQDKFG 146
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D +A + G+T L A GH +IV L++ G DV
Sbjct: 50 PLHL---AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
NA D +G PLH AA +L +V L+++GA + A
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 356 AGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHS 411
AG D VR L+ G DVNA+D+ GW PLH AA +L +V L+++GA + A H+
Sbjct: 24 AGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 317 LLDASLEG---ELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
LL+A+ G E+ ++M D +A + G T LH A GH +IV L++ G DVN
Sbjct: 18 LLEAARAGRDDEVRILMANG---ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
A D G PL AA +L +V L+++GA + A H
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH 114
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+L G LE+V + D +A + EG T LH A GH +IV L++ G DV
Sbjct: 83 PLRL---AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 140 NAQDKFG 146
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
L++A+ G + V DP+A++ +G T LH A GH +IV+ L+ G D NA+D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
SDG PLH AA + +V+ L+ GA
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGA 94
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 47/84 (55%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
A+ G E+V DP+A + +G T LH A GH +IV+ L+ G D NA+DSDG
Sbjct: 44 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 103
Query: 380 WMPLHCAASCNNLAMVRFLVEHGA 403
PLH AA + +V+ L+ GA
Sbjct: 104 RTPLHYAAENGHKEIVKLLLSKGA 127
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
A+ G E+V DP+A + +G T LH A GH +IV+ L+ G D N DSDG
Sbjct: 77 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Query: 380 WMPLHCAASCNNLAMVRFLVEHGA 403
PL A N +V+ L + G
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 317 LLDASLEG---ELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
LL+A+ G E+ ++M D +A ++ G+T L+ A GH +IV L++ G DVN
Sbjct: 18 LLEAARAGQDDEVRILMANG---ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
A D+ G+ PLH AA +L + L++HGA
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ G LE+V + D +A + G T LH A GH +I L++ G DV
Sbjct: 50 PLYL---ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 107 NAQDKFG 113
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 52/91 (57%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A + +G T LH A H +IV L++ G DVNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
+DG PLH AA +L +V L++HGA + A
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNA 108
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L D LE+V + D +A +++G T LH A GH +IV L++ G DV
Sbjct: 50 PLHLAADYD---HLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADV 106
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 107 NAQDKFG 113
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
AS G L +V + P+ +N + T LH A AGH ++ ++L+Q VNA+ D
Sbjct: 21 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80
Query: 380 WMPLHCAASCNNLAMVRFLVEHGA 403
PLHCAA + MV+ L+E+ A
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNA 104
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A+ EG E+V + + N G+T LH GH + L++ G V
Sbjct: 248 PLHL---AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
+A G+ PLH A+ N+ +V+FL++H A + A T
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 341
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 339 PSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
P+AA G+T LH A+ + DIV+ L+ G ++ +G+ PLH AA N + + R L
Sbjct: 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231
Query: 399 VEHGA 403
+++G
Sbjct: 232 LQYGG 236
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
G T LH A G+ +V+FL+Q DVNA+ G+ PLH AA + +V L+++GA
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 320 ASLEGELELVMKTARLVKDPSAA--NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDS 377
A+ EG +E V+ A L K+ S A +G T LH A G + L++ NA
Sbjct: 120 AAREGHVETVL--ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177
Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGA 403
+G PLH A NNL +V+ L+ G
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGG 203
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 310 SFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG 369
+ PL + A+ + ++E+ + +A + +G+T LH A GH ++V L+
Sbjct: 212 GYTPLHI---AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268
Query: 370 CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
+ N + G PLH A ++ + L++HG + ATT
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
+ + PL + AS G ++LV + D +A G + LH A GH DIV L++
Sbjct: 310 MGYTPLHV---ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
G N SDG PL A +++ L
Sbjct: 367 GASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 347 ITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIF 406
+T LH A GH IV+ L+Q G N + PLH AA + + ++L+++ A +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 407 ATTHSD 412
A D
Sbjct: 75 AKAKDD 80
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+P+ A G T LH A GH + V L++ G+ PLH AA + +
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164
Query: 398 LVE 400
L+E
Sbjct: 165 LLE 167
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+P + G +H+A AG D ++ L++F DVN +D++G +PLH AA +L +V F
Sbjct: 62 NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 398 LVEHGA 403
LV+H A
Sbjct: 122 LVKHTA 127
Score = 32.0 bits (71), Expect = 0.84, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQ 367
A++ DA+ G+L+ + D + ++EG LH A GH +V FLV+
Sbjct: 71 FAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+P + G +H+A AG D ++ L++F DVN +D++G +PLH AA +L +V F
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 398 LVEHGACIFATTHSDHE 414
LV+H A H +H+
Sbjct: 122 LVKHTAS--NVGHRNHK 136
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQ 367
A++ DA+ G L+ + D + ++EG LH A GH +V FLV+
Sbjct: 71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+P + G +H+A AG D ++ L++F DVN +D++G +PLH AA +L +V F
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 398 LVEHGACIFATTHSDHE 414
LV+H A H +H+
Sbjct: 122 LVKHTAS--NVGHRNHK 136
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQ 367
A++ DA+ G L+ + D + ++EG LH A GH +V FLV+
Sbjct: 71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A + G T LH A GH +IV L++ G DVNA
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
+ G PLH AA ++L +V L++HGA + A
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A++ G LE+V + D +A + G T LH A A H +IV L++ G DV
Sbjct: 50 PLHL---AAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 373 NAQDSDG 379
NAQD G
Sbjct: 107 NAQDKFG 113
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
L A AG D VR L G DVNA D G PLH AA +L +V L+++GA + AT
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 410 HS 411
++
Sbjct: 78 NT 79
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V ALYDY+A DEL+FK G+ IIV +K + WW +LN K G+VP N
Sbjct: 7 VKALYDYDAQTGDELTFKEGDTIIVHQK---DPAGWWEGELNGKRGWVPAN 54
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V ALYDY+A DEL+FK G+ IIV +K + WW +LN K G+VP N
Sbjct: 6 VKALYDYDAQTGDELTFKEGDTIIVHQK---DPAGWWEGELNGKRGWVPAN 53
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+P + G +H+A AG D ++ L++F DVN +D++G +PLH AA +L +V F
Sbjct: 62 NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 398 LVEHGA 403
LV+H A
Sbjct: 122 LVKHTA 127
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 315 ALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQ 367
A++ DA+ G L+ + D + ++EG LH A GH +V FLV+
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 328 LVMKTARLVKDPSAAND----EGITALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMP 382
LV K A++ D +A D +G TALH A + IV++LV + G + + QD DG P
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTP 316
Query: 383 LHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
+ AA + +V +L++ GA + A +DH
Sbjct: 317 IXLAAQEGRIEVVXYLIQQGASVEAVDATDH 347
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 48/87 (55%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A + G+T LH A H +IV L++ G DVNA D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
+ G PLH A +L +V L++HGA
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGA 104
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
V PL L A++ LE+V + D +A + G T LH GH +IV L++
Sbjct: 46 VGLTPLHL---AAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKH 102
Query: 369 GCDVNAQDSDG 379
G DVNAQD G
Sbjct: 103 GADVNAQDKFG 113
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D A + G+ LHNA GH+++ L++ G VNA D + PLH AAS N + +
Sbjct: 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142
Query: 398 LVEHGA 403
L+ HGA
Sbjct: 143 LLSHGA 148
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 317 LLDASLEGELELVMKTAR-LVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
LL+A+ G E +M L + A++ T LH A IV+ L+Q G DV+A+
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
D G +PLH A S + + L++HGAC+ A
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
N + +T LH A H D++ L + G +NA DS G LH AA +L R L+ +G
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Query: 403 A 403
+
Sbjct: 304 S 304
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 317 LLDASLEGELELVMKTARL----VKDPSAANDEGITALHNAICAGH---FDIVRFLVQFG 369
LL A+ E +L V KT L K P + TALH A+ + H + L++ G
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHE----TALHCAVASLHPKRKQVAELLLRKG 237
Query: 370 CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+VN ++ D PLH AA + ++ L +HGA
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
G TALH A AGH R L+ +G D + G+ AA N A+ + L E
Sbjct: 280 GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF----TAAQMGNEAVQQILSE 330
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEG--ITALHNAICAGHFDIVRFLVQFGCDVNA 374
LL+A+ G++E V K V+ + + EG T LH A +V +L+Q G DV+A
Sbjct: 16 LLEAAKAGDVETVKKLCT-VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 375 QDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
+D G +PLH A S + + LV+HGA +
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVKHGAVV 105
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D A + G+ LHNA GH+++ LV+ G VN D + PLH AA+ + +
Sbjct: 71 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 130
Query: 398 LVEHGA 403
L++HGA
Sbjct: 131 LLQHGA 136
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 340 SAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM--PLHCAASCNNLAMVRF 397
S N E L A AG + V+ L VN +D +G PLH AA N +++V +
Sbjct: 6 SLGNSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 398 LVEHGACIFA 407
L++HGA + A
Sbjct: 65 LLQHGADVHA 74
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 327 ELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPL 383
EL++K +V + A+ T LH A G ++I + L+Q G D ++ DG PL
Sbjct: 96 ELLVKHGAVV---NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEG--ITALHNAICAGHFDIVRFLVQFGCDVNA 374
LL+A+ G++E V K V+ + + EG T LH A +V +L+Q G DV+A
Sbjct: 14 LLEAAKAGDVETVKKLCT-VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 375 QDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
+D G +PLH A S + + LV+HGA +
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVKHGAVV 103
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D A + G+ LHNA GH+++ LV+ G VN D + PLH AA+ + +
Sbjct: 69 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 128
Query: 398 LVEHGA 403
L++HGA
Sbjct: 129 LLQHGA 134
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM--PLHCAASCNNLAMVRFL 398
+ N E L A AG + V+ L VN +D +G PLH AA N +++V +L
Sbjct: 5 SGNSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 63
Query: 399 VEHGACIFA 407
++HGA + A
Sbjct: 64 LQHGADVHA 72
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 327 ELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPL 383
EL++K +V + A+ T LH A G ++I + L+Q G D ++ DG PL
Sbjct: 94 ELLVKHGAVV---NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEG--ITALHNAICAGHFDIVRFLVQFGCDVNA 374
LL+A+ G++E V K V+ + + EG T LH A +V +L+Q G DV+A
Sbjct: 12 LLEAAKAGDVETVKKLCT-VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 375 QDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
+D G +PLH A S + + LV+HGA +
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVV 101
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D A + G+ LHNA GH+++ LV+ G VN D + PLH AA+ + +
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126
Query: 398 LVEHGA 403
L++HGA
Sbjct: 127 LLQHGA 132
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 340 SAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM--PLHCAASCNNLAMVRF 397
+ N E L A AG + V+ L VN +D +G PLH AA N +++V +
Sbjct: 2 AMGNSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEY 60
Query: 398 LVEHGACIFA 407
L++HGA + A
Sbjct: 61 LLQHGADVHA 70
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 327 ELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPL 383
EL++K +V + A+ T LH A G ++I + L+Q G D ++ DG PL
Sbjct: 92 ELLVKHGAVV---NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+P + G +H+A AG D ++ L++ DVN +D++G +PLH AA +L +V F
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 398 LVEHGA 403
LV+H A
Sbjct: 122 LVKHTA 127
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
V A+YDY ANN DELSF G+ I V+ K D + WW ++N G P N + +
Sbjct: 21 VIAMYDYAANNEDELSFSKGQLINVMNKDDPD---WWQGEINGVTGLFPSNYVKMTTDSD 77
Query: 509 PS 510
PS
Sbjct: 78 PS 79
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
N G T LH A G V +L+Q G D N +D GW PLH A + +L +V L++H
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 403 ACIFATTHSD 412
A + T + +
Sbjct: 67 ALVNTTGYQN 76
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 316 LLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
LL AS++G++ V + DP+ + G T LH A GH +V L+Q VN
Sbjct: 13 LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGA 403
PLH AA ++ +V+ L+ +GA
Sbjct: 73 GYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 326 LELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPL 383
+EL+++ LV ND + LH+A GH DIV+ L+ +G NA + G P+
Sbjct: 59 VELLLQHKALVNTTGYQND---SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 317 LLDASLEGELELV---MKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG-CDV 372
L++A+ LE V +K LV DP A EG T LH A GH+++V++L+ G DV
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALV-DPKDA--EGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
N QD GW P+ A ++ +V+ L+ G+
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
LH A AGH DI LVQ G +++ D PL AA N+L V++L++ GA +
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNL-AMVRFL 398
N+E I LH A +G DI L+ CD++A + G PLH AA N +V FL
Sbjct: 142 NEENIC-LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL 197
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAA--SCNNLAMV 395
D + +D G T + A H D+V+ L+ G D+N +D++ + LH AA C ++A +
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
A YD++A DELSFK G+ + VL +E ++ W+ ++LN K+G++P+N + + P
Sbjct: 14 AKYDFKATADDELSFKRGDILKVL--NEECDQNWYKAELNGKDGFIPKNYIEMKP 66
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
V A+YDY ANN DELSF G+ I V+ K D +WW ++N G P N + +
Sbjct: 37 VIAMYDYAANNEDELSFSKGQLINVMNKDDP---DWWQGEINGVTGLFPSNYVKM 88
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALYD+EA DEL F++GE + VL D + WW +L+NK G P N
Sbjct: 6 ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 51
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALYD+EA DEL F++GE + VL D + WW +L+NK G P N
Sbjct: 8 ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 53
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALYD+EA DEL F++GE + VL D + WW +L+NK G P N
Sbjct: 10 ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 55
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L LLD++ G L+L A N +G+TALH A+ + V+ L++ G D++
Sbjct: 95 LRALLDSAAPGTLDL-----------EARNYDGLTALHVAVNTECQETVQLLLERGADID 143
Query: 374 AQD-SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHS 411
A D G PL A N+L+MV+ L++HGA + A +S
Sbjct: 144 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
G + L +A+ +V+ L+Q G +VNAQ G LH A+ L +VR LV GA
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA 207
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALYD+EA DEL F++GE + VL D + WW +L+NK G P N
Sbjct: 7 ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 52
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
A YD++A DELSFK G+ + VL +E ++ W+ ++LN K+G++P+N + + P
Sbjct: 5 AKYDFKATADDELSFKRGDILKVL--NEECDQNWYKAELNGKDGFIPKNYIEMKP 57
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
V AL+D++ EL F+ G+ I V+ D N WW + + G PRN +
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRNYV 210
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
A+ +G L +V++ + DPS + EG + +H A GH IV +L+ G DV+ D +G
Sbjct: 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142
Query: 380 WMPLHCAA 387
PL AA
Sbjct: 143 MTPLMWAA 150
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
T LH A GH +V L+++G D + D +G +H AA + ++V +L+ G
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
TALH A+ AG+ ++ L++ G +V+AQ+ G L A N+ M+ L E
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 345 EGITALHNAICAGHFDIVRFLV-------QFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
E +T LH A D+V++ + Q G D+N+ PLH A +L+MV
Sbjct: 41 ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST------PLHWATRQGHLSMVVQ 94
Query: 398 LVEHGA 403
L+++GA
Sbjct: 95 LMKYGA 100
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
V ALYDYEA + ++LSF+ G+ ++VL E EWW ++ KEGY+P N
Sbjct: 3 VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSN 51
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LLGLYPR 506
ALYD A + DELSF+ G+ + VL + + WW L+ ++G VP N L+G+Y +
Sbjct: 8 ALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYDK 67
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 504
V AL+D+ + EL+FK G+ I ++ K D N WW +LNN+ G P N + Y
Sbjct: 7 VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVAPY 59
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
+ +G T LHNA GH + V+ L+ G DVNA+ DG PLH AA + +V+ L+
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 402 GACIFATT 409
GA + A +
Sbjct: 65 GADVNARS 72
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 47/93 (50%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
L +A+ G E V K D +A + +G T LH A GH +IV+ L+ G DVNA+
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
DG P H A + +V+ L GA + A +
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
V ALYDYEA + ++LSF+ G+ ++VL E EWW ++ KEGY+P N
Sbjct: 12 VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSN 60
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 310 SFDPLALLLDASL--EGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQ 367
+ P+ L A+L + ++E V++ RL + A+ G TAL A+ G D+V+ L+
Sbjct: 145 GYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLA 204
Query: 368 FGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
DVN QD DG L CA + + L+ +C + T D TA
Sbjct: 205 CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTA 253
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 443 ILNNGAVY---ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
++++G+V AL+D+ + EL FK G+ I V+ D REWWW ++ + EG+ P +
Sbjct: 24 LISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVM---DATNREWWWGRVADGEGWFPAS 80
Query: 500 LLGL 503
+ L
Sbjct: 81 FVRL 84
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 504
V AL+D+ + EL+FK G+ I ++ K D N WW +LNN+ G P N + Y
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVCPY 57
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L +++ S LEL+ + A P+ + G + +H+A G D ++ LV+ G DVN
Sbjct: 40 LQVMMFGSTAIALELLKQGA----SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFL 398
D G +P+H A + A+V FL
Sbjct: 96 VPDGTGALPIHLAVQEGHTAVVSFL 120
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 317 LLDASLEGELELVMKTA-RLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
L A+ G+++ V + R + P A N G TAL + G I L++ G N Q
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQ 64
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGA 403
D+ G P+H AA L ++ LVEHGA
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGA 92
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L +++ S LEL+ + A P+ + G + +H+A G D ++ LV+ G DVN
Sbjct: 46 LQVMMFGSTAIALELLKQGA----SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 101
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFL 398
D G +P+H A + A+V FL
Sbjct: 102 VPDGTGALPIHLAVQEGHTAVVSFL 126
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 317 LLDASLEGELELVMKTA-RLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
L A+ G+++ V + R + P A N G TAL + G I L++ G N Q
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQ 70
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGA 403
D+ G P+H AA L ++ LVEHGA
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGA 98
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 502
V ALYDYEA + ++LSF+ G+ ++VL E EWW ++ KEGY+P N +
Sbjct: 5 VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYVA 56
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 501
V ALYDYEA + ++LSF+ G+ ++VL E EWW ++ KEGY+P N +
Sbjct: 11 VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYV 61
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
L A AG D VR L+ G DVNA+D DG+ PLH AA +L +V L++ GA + A
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A + +G T LH A GH +IV L++ G DVNAQD
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 377 SDG 379
G
Sbjct: 66 KFG 68
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L +++ S LEL+ + A P+ + G + +H+A G D ++ LV+ G DVN
Sbjct: 46 LQVMMFGSPAVALELLKQGA----SPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN 101
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFL 398
A DS G +P+H A + ++V FL
Sbjct: 102 ALDSTGSLPIHLAIREGHSSVVSFL 126
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 317 LLDASLEGELELVMKTA-RLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
L A+ G+++ V + R + P A N G TAL + G + L++ G N Q
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSPAVALELLKQGASPNVQ 70
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
D+ G P+H AA L ++ LVEHGA + A
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVNA 102
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L +++ S LEL+ + A P+ + G + +H+A G D ++ LV+ G DVN
Sbjct: 48 LQVMMFGSPAVALELLKQGA----SPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN 103
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFL 398
A DS G +P+H A + ++V FL
Sbjct: 104 ALDSTGSLPIHLAIREGHSSVVSFL 128
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 317 LLDASLEGELELVMKTA-RLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
L A+ G+++ V + R + P A N G TAL + G + L++ G N Q
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSPAVALELLKQGASPNVQ 72
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
D+ G P+H AA L ++ LVEHGA + A
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVNA 104
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALY++ +L+FK G+ I +L+K D ++ +WW + N KEG P N
Sbjct: 8 ALYNFAGEQPGDLAFKKGDVITILKKSD-SQNDWWTGRTNGKEGIFPAN 55
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
V +YDY A N DEL+F G+ I VL K D + WW +++ + G P N + L +
Sbjct: 5 VIGMYDYTAQNDDELAFSKGQIINVLNKEDPD---WWKGEVSGQVGLFPSNYVKLTTDMD 61
Query: 509 PS 510
PS
Sbjct: 62 PS 63
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 504
V AL+D+ + EL+FK G+ I ++ K D N WW +LNN+ G P N + Y
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVCPY 57
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRN 499
V ALYDY AN +DEL+ G+ I V K +E +WW+ + +EGY P N
Sbjct: 9 VVALYDYTANRSDELTIHRGDIIRVFFKDNE---DWWYGSIGKGQEGYFPAN 57
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 443 ILNNGAVY---ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
++++G+V AL+D+ + EL FK G+ I V+ D REWWW ++ + EG+ P +
Sbjct: 30 LISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVM---DATNREWWWGRVADGEGWFPAS 86
Query: 500 LLGL 503
+ L
Sbjct: 87 FVRL 90
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 10/66 (15%)
Query: 442 GILNNGA----VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGY 495
GI G+ V ALYDYEA + ++LSF+ G+ ++VL E EWW ++ KEGY
Sbjct: 1 GIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGY 56
Query: 496 VPRNLL 501
+P N +
Sbjct: 57 IPSNYV 62
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
ALYDYEA T++LSFK GE ++ + E +WW ++ K GY+P N
Sbjct: 32 ALYDYEARTTEDLSFKKGERFQII---NNTEGDWWEARSIATGKSGYIPSN 79
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
ALYDYEA T++LSFK GE ++ + E +WW ++ K GY+P N
Sbjct: 10 ALYDYEARTTEDLSFKKGERFQII---NNTEGDWWEARSIATGKNGYIPSN 57
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
A D++A DELSFK G+ + VL +E+++ W+ ++LN K+G++P+N +
Sbjct: 5 AKVDFKATADDELSFKRGDILKVL--NEESDQNWYKAELNGKDGFIPKNYI 53
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A
Herpesviral Ligand
Length = 65
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
V ALY Y+ + D+LSFK GE + VL E EWW +K L KEG++P N
Sbjct: 10 VVALYPYDGIHPDDLSFKKGEKMKVL----EEHGEWWKAKSLLTKKEGFIPSN 58
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
V ALYDYEA + ++LSF+ G+ ++VL E EWW ++ KEGY+P N
Sbjct: 28 VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSN 76
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 443 ILNNGAVY---ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
++++G+V AL+D+ + EL FK G+ I V D REWWW ++ + EG+ P +
Sbjct: 61 LISDGSVVCAEALWDHVTXDDQELGFKAGDVIEVX---DATNREWWWGRVADGEGWFPAS 117
Query: 500 LLGL 503
+ L
Sbjct: 118 FVRL 121
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNL 500
L+ Y N DEL+F+ GE I ++ K + E WW +LN KEG P N
Sbjct: 12 LFPYTGTNEDELTFREGEIIHLISK-ETGEAGWWKGELNGKEGVFPDNF 59
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK------EGYVPRNLLG 502
L+D+++ +ELSF+ G+ V RK E +WWW+ L ++ +GYVP N L
Sbjct: 15 GLWDFKSRTDEELSFRAGDVFHVARK----EEQWWWATLLDEAGGAVAQGYVPHNYLA 68
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
ALY + + +L F+ G+ I +L+K D ++ +WW ++N +EG P N + L
Sbjct: 8 ALYSFAGEESGDLPFRKGDVITILKKSD-SQNDWWTGRVNGREGIFPANYVEL 59
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 504
A++D+ EL+FK G+ I VL D + ++WWW +++++EG+ P + + L+
Sbjct: 15 AVWDHVTMANRELAFKAGDVIKVL---DASNKDWWWGQIDDEEGWFPASFVRLW 65
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
V ALYDY + + D+LSF+ G+ ++VL E EWW ++ KEGY+P N
Sbjct: 6 VVALYDYVSWSPDDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSN 54
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 442 GILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
G L + ALY Y+A +TDELSF + I +++ E+ WW +L K+G P N
Sbjct: 1 GPLGSPQCKALYAYDAQDTDELSFNANDIIDIIK---EDPSGWWTGRLRGKQGLFPNN 55
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N + L P ++
Sbjct: 8 IFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKLLPPLE 63
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
V ALYDY + + D+LSF+ G+ ++VL E EWW ++ KEGY+P N
Sbjct: 6 VVALYDYVSWSPDDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSN 54
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N + L P
Sbjct: 9 IFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKLLP 61
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD-SDGWMPLHCAASCNNLAMVRFLV 399
A N G T LH A G+ IV LV G DVNAQ+ +G LH A N +V L+
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
Query: 400 EHGACIFATTHSDH 413
+ GA + T+ +
Sbjct: 172 KCGADVNRVTYQGY 185
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 320 ASLEGELELVMKTARLVKDPSA----ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
A + E L M+ R VK A N+ T LH A+ +I L+ GCD +
Sbjct: 15 AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHS 411
D G PLH A LA V L + +C HS
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQ--SCTTPHLHS 108
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 320 ASLEGELELVMKTARLVKDPSAAND-EGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD 378
AS+ G L +V L D +A G TALH A+ + D+V L++ G DVN
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183
Query: 379 GWMP 382
G+ P
Sbjct: 184 GYSP 187
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG 502
A+ DY A + +LSF GE I++LR + +WWW + GY+P N +G
Sbjct: 12 AIADYAATDETQLSFLRGEKILILR---QTTADWWWGERAGCCGYIPANHVG 60
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
V ALYDYE DELSF G I +L K ++++ +W + N + G P L+
Sbjct: 11 VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + DE++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 4 VLALYDYQEKSPDEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 49
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
L A AG D VR L+ G DV A+D +G PLH AA +L +V+ L+E GA + A
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA 85
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A + G T LH A GH ++V+ L++ G DV AQD
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 377 SDG 379
G
Sbjct: 88 KFG 90
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
V ALYD+EA +EL+FK GE I VL D N WW + + G P N +
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDAN---WWQGENHRGTGLFPSNFV 57
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
V A+YD+EA +EL+FK GE I VL D N WW + + G P N +
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDPN---WWKGETHQGIGLFPSNFV 69
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 324 GELELV--MKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM 381
G LE+V + L D + ++G+T LH A+ F++ +FL++ G V +D +
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 382 PLHCAASCNNLAMVRFLVEHG 402
PLH AAS +L ++ L G
Sbjct: 143 PLHRAASVGSLKLIELLCGLG 163
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 350 LHNAICAGHFDIVRFLVQFG-CDVNAQDSDGWMPL-HCAASCNNLAMVRFLVEHGA 403
LH A G ++ L G VN QD GW PL H A + A V + ++GA
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 199
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD---SDGWMPLHCAASCNNLAMVRFLV 399
+ +G LH ++ +I FL+ +VN D GW P H A S NL +V+ L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 400 E 400
+
Sbjct: 93 D 93
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQ--FGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
+D G T H A G+ ++V+ L D+N + G LH A + +FL+E
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 401 HGACI 405
+GA +
Sbjct: 129 NGASV 133
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + DE++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPDEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 324 GELELV--MKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM 381
G LE+V + L D + ++G+T LH A+ F++ +FL++ G V +D +
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 382 PLHCAASCNNLAMVRFLVEHG 402
PLH AAS +L ++ L G
Sbjct: 143 PLHRAASVGSLKLIELLCGLG 163
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 350 LHNAICAGHFDIVRFLVQFG-CDVNAQDSDGWMPL-HCAASCNNLAMVRFLVEHGA 403
LH A G ++ L G VN QD GW PL H A + A V + ++GA
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 199
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD---SDGWMPLHCAASCNNLAMVRFLV 399
+ +G LH ++ +I FL+ +VN D GW P H A S NL +V+ L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 400 E 400
+
Sbjct: 93 D 93
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQ--FGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
+D G T H A G+ ++V+ L D+N + G LH A + +FL+E
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 401 HGACI 405
+GA +
Sbjct: 129 NGASV 133
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 324 GELELV--MKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM 381
G LE+V + L D + ++G+T LH A+ F++ +FL++ G V +D +
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 382 PLHCAASCNNLAMVRFLVEHG 402
PLH AAS +L ++ L G
Sbjct: 143 PLHRAASVGSLKLIELLCGLG 163
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 350 LHNAICAGHFDIVRFLVQFG-CDVNAQDSDGWMPL-HCAASCNNLAMVRFLVEHGA 403
LH A G ++ L G VN QD GW PL H A + A V + ++GA
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 199
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD---SDGWMPLHCAASCNNLAMVRFLV 399
+ +G LH ++ +I FL+ +VN D GW P H A S NL +V+ L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 400 E 400
+
Sbjct: 93 D 93
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQ--FGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
+D G T H A G+ ++V+ L D+N + G LH A + +FL+E
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 401 HGACI 405
+GA +
Sbjct: 129 NGASV 133
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 508
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N + +Q
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 65
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 508
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N + +Q
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 64
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
V ALYDY+ DELSFK G+ + L G+E+E+ W +L++ + LGLYP
Sbjct: 6 VRALYDYDGQEQDELSFKAGDELTKL--GEEDEQGWCRGRLDSGQ-------LGLYP 53
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 310 SFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG 369
F PL + A+ G++ +V + DP +AL A G+ DIV+ L+ G
Sbjct: 34 GFTPL---MWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 90
Query: 370 CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
DVN D +G PL A N++ V+ L+E GA
Sbjct: 91 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+N D +G+ PL AA+ +A+V FL+++GA
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 58
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N + L P
Sbjct: 15 IFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKLLP 67
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 310 SFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG 369
F PL + A+ G++ +V + DP +AL A G+ DIV+ L+ G
Sbjct: 52 GFTPL---MWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 108
Query: 370 CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
DVN D +G PL A N++ V+ L+E GA
Sbjct: 109 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+N D +G+ PL AA+ +A+V FL+++GA
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 76
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 310 SFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG 369
F PL + A+ G++ +V + DP +AL A G+ DIV+ L+ G
Sbjct: 36 GFTPL---MWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92
Query: 370 CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
DVN D +G PL A N++ V+ L+E GA
Sbjct: 93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+N D +G+ PL AA+ +A+V FL+++GA
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 446 NGAVYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLL 501
N +A+Y ++A N +ELS + + +L D EWW +++N K+GYVP N +
Sbjct: 13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYI 69
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 444 LNNGA---VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNL 500
LNN V ALYD+EA +EL+FK GE IIVL D N WW + + G P N
Sbjct: 12 LNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDAN---WWKGENHRGIGLFPSNF 68
Query: 501 L 501
+
Sbjct: 69 V 69
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD-SDGWMPLHCAASCNNLAMVRFLV 399
A N G T LH A G+ IV LV G DVNAQ+ +G LH A N +V L+
Sbjct: 109 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
Query: 400 EHGACIFATTHSDH 413
+ GA + T+ +
Sbjct: 169 KCGADVNRVTYQGY 182
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 320 ASLEGELELVMKTARLVKDPSA----ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
A + E L M+ R VK A N+ T LH A+ +I L+ GCD +
Sbjct: 12 AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 71
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHS 411
D G PLH A LA V L + +C HS
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVLTQ--SCTTPHLHS 105
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 320 ASLEGELELVMKTARLVKDPSAAND-EGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD 378
AS+ G L +V L D +A G TALH A+ + D+V L++ G DVN
Sbjct: 121 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 180
Query: 379 GWMP 382
G+ P
Sbjct: 181 GYSP 184
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
ALYDY A N DEL G+ + V+ +G++ WW + N + G+VP + L
Sbjct: 13 ALYDYTAQNPDELDLSAGDILEVILEGEDG---WWTVERNGQRGFVPGSYL 60
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 328 LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAA 387
L+M+ AR+ + N T LH A GH DIV+ L+Q+ D+NA + G +PLH A
Sbjct: 53 LIMRGARI----NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC 108
Query: 388 SCNNLAMVRFLVEHGACI 405
+ LV +GA +
Sbjct: 109 FWGQDQVAEDLVANGALV 126
Score = 35.0 bits (79), Expect = 0.091, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D + +D G + LH A G +V L+ G +N + PLH AAS + +V+
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 398 LVEHGACIFA 407
L+++ A I A
Sbjct: 86 LLQYKADINA 95
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 310 SFDPLALLLDASLEGELE-LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
F PL +E L+M+ AR+ + N T LH A GH DIV+ L+Q+
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARI----NVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
D+NA + G +PLH A + LV +GA +
Sbjct: 95 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D + +D G + LH A G +V L+ G +N + PLH AAS + +V+
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 398 LVEHGACIFAT 408
L+++ A I A
Sbjct: 91 LLQYKADINAV 101
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding
Length = 68
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 442 GILNNGA---VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVP 497
G L +GA V YD++A N+ ELS K + + VL ++ R+WW + +EGYVP
Sbjct: 1 GPLGSGALKWVLCNYDFQARNSSELSVKQRDVLEVL----DDSRKWWKVRDPAGQEGYVP 56
Query: 498 RNLLGLYP 505
N+L YP
Sbjct: 57 YNILTPYP 64
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
T LH A GH +IV L++ G DVNA+D LH A N+ +V L+++GA
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
Score = 37.0 bits (84), Expect = 0.023, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
G + LH A GHF L++ G +A+ PLH AAS + +V L++HGA +
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 406 FA 407
A
Sbjct: 94 NA 95
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
A+ EG +V + D +A + +TALH A H ++V L+++G DV+ Q
Sbjct: 74 AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
ALY ++A DEL+ + G+ +I+ K +E WW+ LN K+G+ P
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEG---WWFGSLNGKKGHFP 55
>pdb|2ROL|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding
Length = 64
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP 505
YD++A N+ ELS K + + VL ++ R+WW + +EGYVP N+L YP
Sbjct: 14 YDFQARNSSELSVKQRDVLEVL----DDSRKWWKVRDPAGQEGYVPYNILTPYP 63
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
L A AG D VR L+ G DV A+D +G PLH AA +L +V+ L+E GA + A
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNA 67
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+A+ G+ + V D +A + G T LH A GH ++V+ L++ G DVNAQD
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 377 SDG 379
G
Sbjct: 70 KFG 72
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++GYVP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGYVP 54
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
L+ AS GE+E V DP E +AL A G+ DIV L++ D+N D
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
+G PL A N++ V L+ GA + TT +D
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADL--TTEAD 133
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 56
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
L+DY N DEL G+ I V+ +E E WW LNNK G P N +
Sbjct: 10 LFDYSPQNEDELELIVGDVIDVI---EEVEEGWWSGTLNNKLGLFPSNFV 56
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
V ALYDYE DELSFK G+ + + DE+E+ W +L+N + +GLYP
Sbjct: 431 VRALYDYEGQEHDELSFKAGDELTKME--DEDEQGWCKGRLDNGQ-------VGLYP 478
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 57
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
L+ AS GE+E V DP E +AL A G+ DIV L++ D+N D
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
+G PL A N++ V L+ GA + TT +D
Sbjct: 100 WNGGTPLLYAVHGNHVKCVEALLARGADL--TTEAD 133
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N
Sbjct: 5 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 52
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 508
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N + +Q
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 66
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 508
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N + +Q
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 64
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 53
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
A+L G +L+ + + A N + LH A GHF +V+ L+ N +D G
Sbjct: 93 AALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSG 152
Query: 380 WMPLHCAASCNNLAMVRFLVEHGACIFAT 408
PL A S + +V L++HGA I A+
Sbjct: 153 NTPLIYACSGGHHELVALLLQHGASINAS 181
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 339 PSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
P+ + G T L A GH ++V L+Q G +NA ++ G LH A ++ +V L
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL 204
Query: 399 VEHGACI 405
+ HGA +
Sbjct: 205 LLHGASV 211
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 334 RLVKDPSAA------NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAA 387
RL K P++ + +G + LH A G D++ L++ G + A+++D +PLH A
Sbjct: 68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC 127
Query: 388 SCNNLAMVRFLVEHGA------------CIFATTHSDHETAAV 418
+ +V+ L++ A I+A + HE A+
Sbjct: 128 QQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVAL 170
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
L+ A G ELV + +A+N++G TALH A+ H +V L+ G V +
Sbjct: 156 LIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN 215
Query: 377 SDGWMPLHCA 386
+ CA
Sbjct: 216 KRQRTAVDCA 225
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
+DY+A + DEL+ GE I +RK D WW ++N + G P N +
Sbjct: 8 FDYQAQHDDELTISVGEIITNIRKEDGG---WWEGQINGRRGLFPDNFV 53
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 53
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW +++N ++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKTEVNGRQGFVP 54
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 53
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN---LLGLYPRV 507
ALYD+E N EL FK G+ I + + DEN W+ L+ G+ P N +L P
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMLHGHSGFFPINYVEILVALPHS 68
Query: 508 QPSA 511
PS+
Sbjct: 69 GPSS 72
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
V ALYDY + + +LSF+ G+ ++VL E EWW ++ KEGY+P N
Sbjct: 6 VVALYDYYSPFSWDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSN 54
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N
Sbjct: 20 ALYDYEAWTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 67
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 4 VLALYDYQEKGDSEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 49
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N
Sbjct: 20 ALYDYEAITEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 67
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N + L
Sbjct: 13 IFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKL 63
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALYD+E N EL FK G+ I + + DEN W+ L+ + G+ P N
Sbjct: 16 ALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMLHGQSGFFPIN 61
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPGEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N
Sbjct: 6 ALYDYEAWTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 53
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 20 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 65
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 436 SVQEKLGILNNG-AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG 494
S E++G LN V ALY +E +L+F+ G+ I V+ K D + +WW KL + G
Sbjct: 6 SGHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTD-SHFDWWEGKLRGQTG 64
Query: 495 YVPRNLLGL 503
P N + +
Sbjct: 65 IFPANYVTM 73
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW ++N ++G+VP
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNGRQGFVP 49
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 53
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
L++Y N DEL K G+ I + +E E WW LNNK G P N +
Sbjct: 7 LFEYIPQNEDELELKVGDIIDI---NEEVEEGWWSGTLNNKLGLFPSNFV 53
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V A+YDY + DELSF+ G I V++K D+ W+ +N G P N
Sbjct: 20 VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDG---WYEGVMNGVTGLFPGN 67
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPAEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N
Sbjct: 5 ALYDYEAITEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 52
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
G+V AL+D++ EL F+ G+ I V+ D N WW + + G PRN
Sbjct: 1 GSVQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 50
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human Epidermal
Growth Factor Receptor Pathway Substrate 8-Like Protein
Length = 68
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE---GYVPRNLLG 502
V LYD+ A N +ELS E + VL G R+WW KL ++ GYVP N+LG
Sbjct: 10 VKILYDFTARNANELSVLKDEVLEVLEDG----RQWW--KLRSRSGQAGYVPCNILG 60
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
L++Y N DEL K G+ I + +E E WW LNNK G P N +
Sbjct: 13 LFEYIPQNEDELELKVGDIIDI---NEEVEEGWWSGTLNNKLGLFPSNFV 59
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVP 497
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIP 55
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 445 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
N V A ++++ N DELSF G+ I V R E WW LN + G+ P N
Sbjct: 7 NQLVVRAKFNFQQTNEDELSFSKGDVIHVTRV---EEGGWWEGTLNGRTGWFPSN 58
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V LYDY+ + EL+ K G+ + +L + ++WW ++N+++G++P
Sbjct: 9 VLVLYDYQEKSPRELTIKKGDILTLL---NSTNKDWWKVEVNDRQGFIP 54
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V LYDY+ + EL+ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLL---NSTNKDWWKIEVNDRQGFVP 54
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
A +D+ A DELSF+ G+ + +L E++ W+ ++L+ KEG +P N +
Sbjct: 5 AKHDFSATADDELSFRKGQILKILNM--EDDSNWYRAELDGKEGLIPSNYI 53
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V LYDY+ + EL+ K G+ + +L + ++WW ++N ++G+VP
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLL---NSTNKDWWKIEVNGRQGFVP 54
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
V +YD +A+N DEL+F GE IIV E ++EWW + + EG R G++P
Sbjct: 4 VKTIYDCQADNDDELTFIEGEVIIVT---GEEDQEWW---IGHIEGQPERK--GVFP 52
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWW--WSKLNNKEGYVPRNLLG 502
ALYDYEA D+LSF GE +L + +E +WW S + GY+P L
Sbjct: 12 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEVRSLTTGETGYIPSPYLA 62
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N
Sbjct: 5 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLTTGRTGYIPSN 52
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLTTGQTGYIPSN 59
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLTTGQTGYIPSN 59
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V LYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLVLYDYQEKSPREVTIKKGDILTLL---NSTNKDWWKIEVNDRQGFVP 54
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN---NKEGYVPRNLLGLYP 505
V +YD +A+N DEL+F GE IIV E ++EWW + ++G P + + +
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVT---GEEDQEWWIGHIEGQPERKGVFPVSFVHILS 69
Query: 506 RVQPSA 511
PS+
Sbjct: 70 DSGPSS 75
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 444 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
L+ + ALYD+E N EL F+ G+ I + + DEN W+ L+ + G+ P
Sbjct: 11 LDQPSCKALYDFEPENDGELGFREGDLITLTNQIDEN---WYEGXLHGQSGFFP 61
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
A+ DYE + E++ TG+ + V+ K +E WW+ ++ K G++P + L
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEK---SESGWWFCQMKAKRGWIPASFL 63
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 15/108 (13%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAAN-DEGITALHNAICAGHFDIVRFLVQFGCDV 372
+A L D +LE + L+ LV +P + EG TALH A+ + ++VR L+ G V
Sbjct: 43 IAALYD-NLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV 101
Query: 373 NAQDSD-------------GWMPLHCAASCNNLAMVRFLVEHGACIFA 407
+A+ + G PL AA + +VR L+EHGA I A
Sbjct: 102 SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA 149
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 353 AICAGHFDIVRFLVQFGCDVNAQDSDGWMPLH 384
A C G +IVR L++ G D+ AQDS G LH
Sbjct: 128 AACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
LYD+E N EL FK G+ I + + DEN W+ ++ + G+ P N
Sbjct: 8 GLYDFEPENQGELGFKEGDIITLTNQIDEN---WYEGMIHGESGFFPIN 53
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
A+ DYE + E++ TG+ + V+ K +E WW+ ++ K G++P + L
Sbjct: 15 AIADYEKTSGSEMALSTGDVVEVVEK---SESGWWFCQMKAKRGWIPASFL 62
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW ++ +++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVGDRQGFVP 54
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
V ALYDY N ++L + G+ +L +E+ WW ++ N +EGY+P N
Sbjct: 4 VVALYDYMPMNANDLQLRKGDEYFIL---EESNLPWWRARDKNGQEGYIPSN 52
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 347 ITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
++ LH A GH V+ L++ G VN +D PL A + V L++HGA +
Sbjct: 93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
+ +H A GH +R L+ G VN +D PLH A +L+ V+ L++HGA +
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 408 TTHSDH 413
T H
Sbjct: 121 VTADWH 126
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+ +H A GH + V L+ +G +++ + S PL+ A A V+ L+E GA
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 214
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 439 EKLGILNNGA--VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEG 494
++ G L G ALYDYE+ +LSFK GE + ++ + E +WW S + G
Sbjct: 76 QRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLSTGQTG 132
Query: 495 YVPRNLL 501
Y+P N +
Sbjct: 133 YIPSNYV 139
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
A+ DYE + E++ TG+ + V+ K +E WW+ ++ K G++P + L
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEK---SESGWWFCQMKAKRGWIPASFL 63
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
A+ DYE + E++ TG+ + V+ K +E WW+ ++ K G++P + L
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEK---SESGWWFCQMKAKRGWIPASFL 63
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V AL+D++ EL F+ G+ I V+ D N WW + + G PRN
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 52
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V AL+D++ EL F+ G+ I V+ D N WW + + G PRN
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 52
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW ++ +++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVADRQGFVP 54
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V A ++++ N DELSF G+ I V R E WW N + G+ P N
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRV---EEGGWWEGTHNGRTGWFPSN 56
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V A ++++ N DELSF G+ I V R E WW N + G+ P N
Sbjct: 7 VRAKFNFQQTNEDELSFSKGDVIHVTRV---EEGGWWEGTHNGRTGWFPSN 54
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V AL+D++ EL F+ G+ I V+ D N WW + + G PRN
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 52
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRN 499
V A+YD++A +L + G+ I+L K N+ WW ++ EGY+P N
Sbjct: 5 VVAMYDFQATEAHDLRLERGQEYIILEK---NDLHWWRARDKYGSEGYIPSN 53
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 441 LGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
LG V ALYDY+ N+ EL+ + E +L D +E WW + N EGYVP +
Sbjct: 3 LGSPEETVVIALYDYQTNDPQELALRRNEEYCLL---DSSEIHWWRVQDRNGHEGYVPSS 59
Query: 500 LL 501
L
Sbjct: 60 YL 61
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
G A YD+ A + ELS K G+ I +L K + ++ WW ++ + G+ P N
Sbjct: 6 GTAKARYDFCARDRSELSLKEGDIIKILNK--KGQQGWWRGEIYGRIGWFPSN 56
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 501
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N +
Sbjct: 8 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLTTGQTGYIPSNYV 57
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 347 ITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
++ LH A GH V+ L++ G VN +D PL A + V L++HGA +
Sbjct: 37 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 95
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
+H A GH +R L+ G VN +D PLH A +L+ V+ L++HGA + T
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+H A GH + V L+ +G +++ + S PL+ A A V+ L+E GA
Sbjct: 105 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
Length = 60
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLL 501
YD+ A + DEL+ K+G+ + +L D+ ++WW +L + K G VP +
Sbjct: 9 YDFMAESQDELTIKSGDKVYIL--DDKKSKDWWMCQLVDSGKSGLVPAQFI 57
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
V ALYDY N ++L + G+ +L +E+ WW ++ N +EGY+P N
Sbjct: 11 VVALYDYMPMNANDLQLRKGDEYFIL---EESNLPWWRARDKNGQEGYIPSN 59
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK---------EGYVPRN 499
AL+DY+A ++LSF+ G+ + VL D + WW ++ K +GY+P N
Sbjct: 12 ALFDYQARTAEDLSFRAGDKLQVL---DTSHEGWWLARHLEKKGTGLGQQLQGYIPSN 66
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 501
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N +
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V A ++++ N DELSF G+ I V R E WW N + G+ P N
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRV---EEGGWWEGTHNGRTGWFPSN 56
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 501
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N +
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 501
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N +
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
V LYDY+ + E++ K G+ + +L + ++WW ++++++G++P
Sbjct: 9 VLVLYDYQEKSPREVTVKKGDILTLL---NSTNKDWWKVEVDDRQGFIP 54
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 508
ALYDY A +LSF GE +L D + +WW ++ + GY+P N + +Q
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQIL---DGDSGDWWEARSLTTGETGYIPSNYVAPVDSIQ 67
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 501
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N +
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC 404
G TALH A D + L++ D N QD+ G PLH A S + + + L+ + A
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V A ++++ N DELS G+ I V R E WW LN + G+ P N
Sbjct: 13 VKARFNFKQTNEDELSVCKGDIIYVTRV---EEGGWWEGTLNGRTGWFPSN 60
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 345 EGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD--------------GWMPLHCAASCN 390
+G TALH AI + +V LV+ G DV A + G +PL AA N
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 391 NLAMVRFLVEH 401
LA+V+FL+++
Sbjct: 160 QLAIVKFLLQN 170
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
ALYD + +DEL+F G+ + +L + WW L+ ++G P N L
Sbjct: 12 ALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRL 62
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
A +D+ A DELSF+ + + +L E++ W+ ++L+ KEG +P N +
Sbjct: 5 AKHDFSATADDELSFRKTQILKILNM--EDDSNWYRAELDGKEGLIPSNYI 53
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 439 EKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 498
E+L LN A Y ++Y A DELS G +IV+ K + WW N + G+ P
Sbjct: 11 ERLYDLNMPA-YVKFNYMAEREDELSLIKGTKVIVMEKCSDG---WWRGSYNGQVGWFPS 66
Query: 499 N 499
N
Sbjct: 67 N 67
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLL 501
YD+ A + DEL+ K+G+ + +L D+ ++WW +L + K G VP +
Sbjct: 13 YDFMAESQDELTIKSGDKVYIL--DDKKSKDWWMCQLVDSGKSGLVPAQFI 61
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 9/58 (15%)
Query: 451 ALYDYE----ANNTD---ELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
ALYDY+ + N D EL+F TG+ I V G+ +E +++ +LN ++G VP N L
Sbjct: 12 ALYDYDPRESSPNVDVEAELTFCTGDIITVF--GEIDEDGFYYGELNGQKGLVPSNFL 67
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
+ Y N DEL K G+ I V+ E E WW LN K G P N +
Sbjct: 14 FSYLPQNDDELELKVGDIIEVV---GEVEEGWWEGVLNGKTGMFPSNFI 59
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 340 SAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV 399
S + E + AL N G D V+ V G DVN G PLH AA C L ++ FL+
Sbjct: 5 SMCDKEFMWALKN----GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL 60
Query: 400 EHGACIFA 407
GA I A
Sbjct: 61 LKGADINA 68
Score = 36.2 bits (82), Expect = 0.043, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 324 GELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPL 383
G+L+ V +D + + G LH A G +I+ FL+ G D+NA D PL
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 384 HCAASCNNLAMVRFLVEHGA 403
A +++ V+ L+ GA
Sbjct: 78 LSAVYEGHVSCVKLLLSKGA 97
Score = 28.5 bits (62), Expect = 9.1, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 324 GELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
G+LE++ D +A + IT L +A+ GH V+ L+ G D + DG
Sbjct: 51 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 446 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
N Y ++Y A DELS G +IV+ K + WW N + G+ P N
Sbjct: 4 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDG---WWRGSYNGQVGWFPSN 54
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALY +E DEL F+ G+ I + D N WW + G +P N
Sbjct: 8 ALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSN 53
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
+ Y N DEL K G+ I V+ E E WW LN K G P N +
Sbjct: 25 FSYLPQNDDELELKVGDIIEVV---GEVEEGWWEGVLNGKTGMFPSNFI 70
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 445 NNGAVY-ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
++G V+ ALY +E DEL F+ G+ I + D N WW + G +P N
Sbjct: 5 SSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSN 57
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 36.2 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
YDY+A + DEL+ + GE I ++K E W +LN + G P N +
Sbjct: 7 YDYDAVHDDELTIRVGEIIRNVKK--LQEEGWLEGELNGRRGMFPDNFV 53
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 36.2 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
YDY+A + DEL+ + GE I ++K E W +LN + G P N +
Sbjct: 8 YDYDAVHDDELTIRVGEIIRNVKK--LQEEGWLEGELNGRRGMFPDNFV 54
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 345 EGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC 404
EG TAL A+ I L+ G +VN +D G PL + M FL+EHGA
Sbjct: 67 EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126
Query: 405 I 405
+
Sbjct: 127 V 127
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
G T L +I G+ ++ FL++ G +VN ++ +G PL A+ +V+ L+E GA I
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI 160
Query: 406 FA 407
A
Sbjct: 161 SA 162
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 36.2 bits (82), Expect = 0.043, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
AL DY ++T L FK + I + K EN +W+ +LN KEG P
Sbjct: 15 ALKDYNVSDTSLLPFKRNDIITITFKDQEN--KWFMGQLNGKEGSFP 59
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human Hypothetical
Protein Flj21522
Length = 68
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
LY++EA N EL+ GE + VL D ++R W + GY+P N+L
Sbjct: 13 LYEFEARNPRELTVVQGEKLEVL---DHSKRWWLVKNEAGRSGYIPSNIL 59
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And
Pinch-1 Lim4 Domain
Length = 71
Score = 36.2 bits (82), Expect = 0.047, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
V LY + + +EL+F+ GE + V+ K EN+ EWW K + G VP+N
Sbjct: 9 VQTLYPFSSVTEEELNFEKGETMEVIEK-PENDPEWWKCKNARGQVGLVPKN 59
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 36.2 bits (82), Expect = 0.048, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 508
ALYDY A +LSF GE +L G +WW ++ + GY+P N + +Q
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQILEFG---PGDWWEARSLTTGETGYIPSNYVAPVDSIQ 67
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 36.2 bits (82), Expect = 0.048, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRN 499
A+YDY A + DE+SFK G+ II ++ DE W + + + G +P N
Sbjct: 8 AMYDYMAADADEVSFKDGDAIINVQAIDEG---WMYGTVQRTGRTGMLPAN 55
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 36.2 bits (82), Expect = 0.048, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 324 GELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPL 383
G+L+ V +D + + G LH A G +I+ FL+ G D+NA D PL
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 384 HCAASCNNLAMVRFLVEHGA 403
A +++ V+ L+ GA
Sbjct: 73 LSAVYEGHVSCVKLLLSKGA 92
Score = 36.2 bits (82), Expect = 0.051, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 28/55 (50%)
Query: 353 AICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
A+ G D V+ V G DVN G PLH AA C L ++ FL+ GA I A
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63
Score = 28.5 bits (62), Expect = 8.2, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 324 GELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPL 383
G+LE++ D +A + IT L +A+ GH V+ L+ G D + DG L
Sbjct: 46 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 35.8 bits (81), Expect = 0.051, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
A +DY + ELSFK G +++ + E +WW + N +G VP +
Sbjct: 11 AKFDYVGRSARELSFKKGASLLLYHRASE---DWWEGRHNGIDGLVPHQYI 58
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 35.8 bits (81), Expect = 0.053, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
V LY + + +EL+F+ GE + V+ K EN+ EWW K + G VP+N
Sbjct: 5 VQTLYPFSSVTEEELNFEKGETMEVIEK-PENDPEWWKCKNARGQVGLVPKN 55
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 35.8 bits (81), Expect = 0.055, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 455 YEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSA 511
Y + + DE+ F+ G + V+RK N WW+ + KEG+ P + L PS+
Sbjct: 17 YTSQSKDEIGFEKGVTVEVIRK---NLEGWWYIRYLGKEGWAPASYLKKAKDSGPSS 70
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 35.8 bits (81), Expect = 0.060, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
GA+ A+Y YEA DE+S G+ I V+R GD+ W + + + +G P
Sbjct: 1 GAMEAIYAYEAQGDDEISIDPGDIITVIR-GDDGS-GWTYGECDGLKGLFP 49
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC 404
G TALH A D + L++ D N QD+ G PLH A S + + + L+ + A
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L ++EG LE ++ + D +A +D G +ALH A + D L++ G +
Sbjct: 95 PLILAARLAVEGMLEDLINSH---ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 151
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
+ Q++ PL AA + + L++H A T H D
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 191
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 35.8 bits (81), Expect = 0.064, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
V LY + + +EL+F+ GE + V+ K EN+ EWW K + G VP+N
Sbjct: 20 VQTLYPFSSVTEEELNFEKGETMEVIEK-PENDPEWWKCKNARGQVGLVPKN 70
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 35.4 bits (80), Expect = 0.071, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 498
V AL+ YEA ++L F+ G+ I+VL K +E EW + K G P+
Sbjct: 8 VEALFSYEATQPEDLEFQEGDIILVLSKVNE---EWLEGESKGKVGIFPK 54
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC 404
G TALH A D + L++ D N QD+ G PLH A S + + + L+ + A
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L ++EG LE ++ + D +A +D G +ALH A + D L++ G +
Sbjct: 127 PLILAARLAVEGMLEDLINSH---ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
+ Q++ PL AA + + L++H A T H D
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 223
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC 404
G TALH A D + L++ D N QD+ G PLH A S + + + L+ + A
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 116
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L ++EG LE ++ + D +A +D G +ALH A + D L++ G +
Sbjct: 128 PLILAARLAVEGMLEDLINSH---ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 184
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
+ Q++ PL AA + + L++H A T H D
Sbjct: 185 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 224
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 35.4 bits (80), Expect = 0.085, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 508
ALYDY+A+ +LSF GE +L +WW ++ + GY+P N + +Q
Sbjct: 11 ALYDYQADRWTDLSFHKGEKFQILDASPPG--DWWEARSLTTGETGYIPSNYVAPVDSIQ 68
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 35.4 bits (80), Expect = 0.086, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 510
A +DY ELSFK G +++ ++ + +WW + N +G +P Y VQ +
Sbjct: 14 AKFDYVGRTARELSFKKGASLLLYQRASD---DWWEGRHNGIDGLIPHQ----YIVVQDT 66
Query: 511 ATP 513
+ P
Sbjct: 67 SGP 69
>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized Average
Structure
Length = 77
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL 501
V ALYDY+ N+ EL+ + E +L D +E WW + N EGY P + L
Sbjct: 23 VIALYDYQTNDPQELALRCDEEYYLL---DSSEIHWWRVQDKNGHEGYAPSSYL 73
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 35.0 bits (79), Expect = 0.093, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALY Y + +L+F GE I+V +K + EWW + ++ G P N
Sbjct: 13 ALYPYSSVEPGDLTFTEGEEILVTQK----DGEWWTGSIGDRSGIFPSN 57
>pdb|1AWO|A Chain A, The Solution Nmr Structure Of Abl Sh3 And Its Relationship
To Sh2 In The Sh(32) Construct, 20 Structures
Length = 62
Score = 35.0 bits (79), Expect = 0.094, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 58
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
G T LHNA+ DIV L++ G D + +G P AA ++ +++ + GA +
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 346 GITALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMPL-HCAASCNNL---AMVRFLVE 400
G TAL +A GH ++++ L+ + G DVNA D+ G L H S ++ A+ L++
Sbjct: 168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 227
Query: 401 HGACI 405
HGA +
Sbjct: 228 HGADV 232
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL + S E +EL+++ DP G T A AG +++ + G DV
Sbjct: 62 PLHNAVQMSREDIVELLLRHG---ADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
N D G+ AA + ++FL + GA +
Sbjct: 119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 16/73 (21%)
Query: 439 EKLGILNNGAVY-ALYDYEANNTDELSFKTGECIIVLRK-----GDENEREWWWSKLNNK 492
+ +G G V+ A++DYEA +EL+ + G+ + VL + GDE WW+
Sbjct: 21 QSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEG----WWT----- 71
Query: 493 EGYVPRNLLGLYP 505
G +P +G++P
Sbjct: 72 -GQLPSGRVGVFP 83
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL 501
V ALYDY+ N+ EL+ + E +L D +E WW + N EGYVP + L
Sbjct: 21 VVIALYDYQTNDPQELALRRNEEYCLL---DSSEIHWWRVQDRNGHEGYVPSSYL 72
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
AL D+E ++ DEL F+ + I ++ + DE+ W +LN G+ P
Sbjct: 12 ALLDFERHDDDELGFRKNDIITIISQKDEH---CWVGELNGLRGWFP 55
>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|A Chain A, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 63
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL 501
V ALYDY+ N+ EL+ + E +L D +E WW + N EGY P + L
Sbjct: 8 VIALYDYQTNDPQELALRCDEEYYLL---DSSEIHWWRVQDKNGHEGYAPSSYL 58
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
ALY + A + L+F + I VL + D WW+ ++ ++G+ P++ + L
Sbjct: 17 ALYPWRAKKDNHLNFNKNDVITVLEQQD----MWWFGEVQGQKGWFPKSYVKL 65
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM-PLHCAASCNNLAMV 395
+D A ++ G TAL G VR L + G D++ +D G + LH AA +V
Sbjct: 67 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 126
Query: 396 RFLVEHGACI 405
LVE GA I
Sbjct: 127 EALVELGADI 136
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 331 KTARLVKDPSAANDE-----GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHC 385
K RL+ + A D G+TALH A ++V LV+ G D+ +D G L
Sbjct: 90 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL 149
Query: 386 A 386
A
Sbjct: 150 A 150
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
A+ G LH+A GH + ++ G D+ A+DS+G PL A N +V L
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
T L A A FL+Q G +VN DS G PLH A + + ++ GA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 445 NNGAVY-ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
++G Y ALY + ++L + G+ I +L D NE +WW K+ ++ G+ P N +
Sbjct: 5 SSGNTYVALYKFVPQENEDLEMRPGDIITLLE--DSNE-DWWKGKIQDRIGFFPANFV 59
>pdb|1BBZ|A Chain A, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|C Chain C, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|G Chain G, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|E Chain E, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
Length = 58
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 5 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 53
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
A+ G LH+A GH + ++ G D+ A+DS+G PL A N +V L
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
T L A A FL+Q G +VN DS G PLH A + + ++ GA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
A+ G LH+A GH + ++ G D+ A+DS+G PL A N +V L
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
T L A A FL+Q G +VN DS G PLH A + + ++ GA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain
pdb|2RNA|A Chain A, Itk Sh3 Average Minimized
Length = 64
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL 501
V ALYDY+ N+ EL+ + E +L D +E WW + N EGY P + L
Sbjct: 8 VIALYDYQTNDPQELALRCDEEYYLL---DSSEIHWWRVQDKNGHEGYAPSSYL 58
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
Length = 80
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 451 ALYDYEANNTD-ELSFKTGECIIVLRKGDENEREWWWSKLNNKE---GYVPRNLLGLYPR 506
ALYD+ N + E++ K G+ + +L K D R+ W K+ K GY+P N + + R
Sbjct: 19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR 78
>pdb|1MV3|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 213
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLR-KGDENEREWW--------WS---KLNNKEGYV 496
V A +DY A +TDEL K G+ ++V+ + E + E W W+ KL G
Sbjct: 145 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVF 204
Query: 497 PRNL 500
P N
Sbjct: 205 PENF 208
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
G T LHNA+ DIV L++ G D + +G P AA ++ +++ + GA
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 346 GITALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMPL-HCAASCNNL---AMVRFLVE 400
G TAL +A GH ++++ L+ + G DVNA D+ G L H S ++ A+ L++
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 401 HGA 403
HGA
Sbjct: 208 HGA 210
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL + S E +EL+++ DP G T A AG +++ + G DV
Sbjct: 42 PLHNAVQMSREDIVELLLRHG---ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
N D G+ AA + ++FL + GA +
Sbjct: 99 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
ALY +EA N DE+SF +G+ I V K E W + G+ P N + P
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEK-TVGEPGWLYGSFQGNFGWFPCNYVEKMP 63
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 454 DYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
+Y+ ELS + GE + V+ K NE WW+ + ++G+VP L
Sbjct: 16 NYKKQENSELSLQAGEVVDVIEK---NESGWWFVSTSEEQGWVPATYL 60
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 451 ALYDYEANNTD-ELSFKTGECIIVLRKGDENEREWWWSKLNNKE---GYVPRNLLGLYPR 506
ALYD+ N + E++ K G+ + +L K D R+ W K+ K GY+P N + + R
Sbjct: 19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR 78
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
ALYDY+A DE+SF + I + D+ WW + G P N + L
Sbjct: 14 ALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPANYVEL 63
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
ALYDY+A DE+SF + I + D+ WW + G P N + L
Sbjct: 15 ALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPANYVEL 64
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
AN +G + LH AI D+ V+ G DVN +D++ +PL+ + + + + L++
Sbjct: 207 ANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLTKELLQ 265
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
++DE +H A G D VR L++ G Q+ G LH A + ++L
Sbjct: 16 SDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75
Query: 402 G 402
G
Sbjct: 76 G 76
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 13 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 61
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM-PLHCAASCNNLAMV 395
+D A ++ G TAL G VR L + G D++ +D G + LH AA +V
Sbjct: 68 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 127
Query: 396 RFLVEHGACI 405
LVE GA I
Sbjct: 128 EALVELGADI 137
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 331 KTARLVKDPSAANDE-----GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHC 385
K RL+ + A D G+TALH A ++V LV+ G D+ +D G L
Sbjct: 91 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL 150
Query: 386 A 386
A
Sbjct: 151 A 151
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
ALYDY+A DE+SF + I + D+ WW + G P N + L
Sbjct: 22 ALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPANYVEL 71
>pdb|1NM7|A Chain A, Solution Structure Of The Scpex13p Sh3 Domain
Length = 69
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 451 ALYDYEANNTD-ELSFKTGECIIVLRKGDENEREWWWSKLNNKE---GYVPRNLL 501
ALYD+ N + E++ K G+ + +L K D R+ W K+ K GY+P N +
Sbjct: 12 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 66
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 361 IVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+V L+ D+NA D+ G LH AA+ NN V L+ H A
Sbjct: 133 MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHA 175
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC 404
G T+LH A D + L+ G D N+QD+ G PLH A + + + + + L+ + A
Sbjct: 51 GETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT 109
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 313 PLALLLDASLEGELE-LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCD 371
PL L ++EG +E L+ A D +AA++ G TALH A + + V L+ +
Sbjct: 121 PLILAARLAIEGMVEDLITADA----DINAADNSGKTALHWAAAVNNTEAVNILLMHHAN 176
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
+AQD PL AA + + L+++ A T H D
Sbjct: 177 RDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMD 217
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQ-FGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
D ++ ++ G T LH A+ A + + L++ ++NA+ DG PL AA MV
Sbjct: 76 DANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 135
Query: 397 FLVEHGACIFATTHS 411
L+ A I A +S
Sbjct: 136 DLITADADINAADNS 150
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 442 GILNNGAVY-ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPR 498
G + N Y A+YDY A + DE+SF+ G+ I+ ++ D+ W + + + G +P
Sbjct: 1 GAMANLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDG---WMYGTVQRTGRTGMLPA 57
Query: 499 NLL 501
N +
Sbjct: 58 NYI 60
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD-GWMPLHCAASCNNLAMVRFLV 399
A N +G T LH A+ ++VR L G D+N + G PLH A +++ L+
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 400 EHGA 403
+ GA
Sbjct: 213 KAGA 216
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 334 RLVKDPSAANDE-----GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAAS 388
RL++D A ++ G T LH A+ A ++ L++ G D A+ G PL A
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL 234
Query: 389 CNNLAMVRFLVEHGA 403
N + R L HGA
Sbjct: 235 RPNPILARLLRAHGA 249
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 344 DEGITALHNAICAGHFDIVRFLVQFGCD---VNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
++G TALH A+ H + FL+ F ++ Q+ G LH AA + V L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 401 HGACIFATTHSDH 413
GA + H
Sbjct: 67 AGAGVLVAERGGH 79
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD-GWMPLHCAASCNNLAMVRFLV 399
A N +G T LH A+ ++VR L G D+N + G PLH A +++ L+
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 400 EHGA 403
+ GA
Sbjct: 213 KAGA 216
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 334 RLVKDPSAANDE-----GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAAS 388
RL++D A ++ G T LH A+ A ++ L++ G D A+ G PL A
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL 234
Query: 389 CNNLAMVRFLVEHGA 403
N + R L HGA
Sbjct: 235 RPNPILARLLRAHGA 249
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 344 DEGITALHNAICAGHFDIVRFLVQFGCD---VNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
++G TALH A+ H + FL+ F ++ Q+ G LH AA + V L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 401 HGACIFATTHSDH 413
GA + H
Sbjct: 67 AGAGVLVAERGGH 79
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
A + Y ELSF+ G+ VLR + +WW + N G +P + L
Sbjct: 15 ACFAYTGRTAQELSFRRGD---VLRLHERASSDWWRGEHNGMRGLIPHKYITL 64
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 87 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 135
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 48 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 96
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 45 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 93
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 346 GITALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
G TAL+ A GH DIV L Q ++N Q+ G LH AA +V+ L+ GA
Sbjct: 106 GSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
ALY +E DEL + G+ I + D N WW + G +P N +
Sbjct: 19 ALYTFEPRTPDELYIEEGDIIYITDXSDTN---WWKGTSKGRTGLIPSNYV 66
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 345 EGITALHNAICAGHFDIVRFLVQFGCDVNAQ---------DSDGW-----MPLHCAASCN 390
G TALH AI V LV+ G DV+AQ D G+ +PL AA N
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151
Query: 391 NLAMVRFLVEHG 402
+V +L E+G
Sbjct: 152 QPHIVHYLTENG 163
>pdb|1JU5|C Chain C, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 61
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 7 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 55
>pdb|1ABO|A Chain A, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABO|B Chain B, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABQ|A Chain A, Crystal Structure Of The Unliganded Abl Tyrosine Kinase
Sh3 Domain
Length = 62
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 9 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 57
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 32.3 bits (72), Expect = 0.60, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 443 ILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVP 497
+L G A Y ++ + ELSF+ GE I ++RK +EN W+ ++ ++G P
Sbjct: 14 VLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNEN---WYEGRITGTGRQGIFP 67
>pdb|1MUZ|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
pdb|1MV0|B Chain B, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 81
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLR-KGDENEREWW--------WS---KLNNKEGYV 496
V A +DY A +TDEL K G+ ++V+ + E + E W W+ KL G
Sbjct: 13 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVF 72
Query: 497 PRNLLGLYP 505
P N P
Sbjct: 73 PENFTERVP 81
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVP 497
G A +++ + E+SF+ GE I +LR+ DEN W+ ++ +++G P
Sbjct: 7 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDEN---WYEGRIPGTSRQGIFP 56
>pdb|2DL5|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Kiaa0769 Protein
Length = 78
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK---EGYVPRNLLGLYPRVQ 508
+Y Y+A+ DEL+ + E + V+ GD + W K NK GYVP L
Sbjct: 19 VYSYKASQPDELTIEEHEVLEVIEDGDMED----WVKARNKVGQVGYVPEKYLQFPTSSG 74
Query: 509 PSA 511
PS+
Sbjct: 75 PSS 77
>pdb|2EKH|A Chain A, Solution Structures Of The Sh3 Domain Of Human Kiaa0418
Length = 80
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 455 YEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSAT 512
Y+ E+SF G + VL K E WW+ + EG+ P + L L QP +
Sbjct: 17 YQKVQDSEISFPAGVEVQVLEK---QESGWWYVRFGELEGWAPSHYLVLDENEQPDPS 71
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC 404
G TALH A D + L++ D QD+ G PLH A S + + + L+ + A
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRAT 80
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L +LEG LE ++ + D +A +D G +ALH A + D L++ G +
Sbjct: 92 PLILAARLALEGMLEDLINSH---ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 148
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
+ Q++ PL AA + + L++H A T H D
Sbjct: 149 DMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMD 188
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
Length = 65
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--------SKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW K ++G+VP
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVKITVNGKTYERQGFVP 57
>pdb|1BB9|A Chain A, Crystal Structure Of The Sh3 Domain From Rat Amphiphysin 2
Length = 115
Score = 32.0 bits (71), Expect = 0.74, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW 486
V A +DY A +TDEL K G+ ++V+ + E++ W
Sbjct: 47 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGW 84
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 32.0 bits (71), Expect = 0.76, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--------SKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW K ++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVKITVNGKTYERQGFVP 62
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 32.0 bits (71), Expect = 0.79, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
A+YDY A + DE+SF+ G+ I+ +++ D+ W + + G +P N
Sbjct: 8 AVYDYSAADEDEVSFQDGDTIVNVQQIDDG---WMYGTVERTGDTGMLPAN 55
>pdb|1AOJ|A Chain A, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined Dimer
pdb|1AOJ|B Chain B, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined Dimer
pdb|1I07|A Chain A, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I07|B Chain B, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I0C|A Chain A, Eps8 Sh3 Closed Monomer
pdb|1I0C|B Chain B, Eps8 Sh3 Closed Monomer
Length = 60
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGL 503
YD+ A N+ ELS + + +L ++ R+WW + + G+VP N+L +
Sbjct: 8 YDFVARNSSELSVMKDDVLEIL----DDRRQWWKVRNASGDSGFVPNNILDI 55
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 32.0 bits (71), Expect = 0.91, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 444 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
+ N AL + A + L+F + I VL E + WW+ +++ G+ P++ + +
Sbjct: 8 VENLKAQALCSWTAKKDNHLNFSKHDIITVL----EQQENWWFGEVHGGRGWFPKSYVKI 63
Query: 504 YP 505
P
Sbjct: 64 IP 65
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--------SKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW K ++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVKATANGKTYERQGFVP 62
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRN 499
AV AL+DY+A DEL+F I + K D WW K+ + P N
Sbjct: 8 AVKALFDYKAQREDELTFTKSAIIQNVEKQDGG---WWRGDYGGKKQLWFPSN 57
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRN 499
AV AL+DY+A DEL+F I + K D WW K+ + P N
Sbjct: 5 AVKALFDYKAQREDELTFTKSAIIQNVEKQDGG---WWRGDYGGKKQLWFPSN 54
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
Length = 62
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN 490
V ALYDY+ + E++ K G+ + +L + ++WW ++N
Sbjct: 24 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVN 62
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRN 499
V A +DY A EL K E + +L ++ + WW N N+ GYVP N
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLL-----DDSKTWWRVRNAANRTGYVPSN 54
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C,
Gamma 2
Length = 69
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK-EGYVPRN 499
V ALYDY+A +DEL+F G I + K WW + + Y P N
Sbjct: 10 VKALYDYKAKRSDELTFCRGALIHNVSK---EPGGWWKGDYGTRIQQYFPSN 58
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--------SKLNNKEGYVP 497
V ALYDY+ + E++ K G+ + +L + ++WW K ++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVKATANDKTYERQGFVP 62
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 445 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
NN LYDY+A N+ ELS E I V + +W + N++G VP L L
Sbjct: 16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGM-DSDWLMGERGNQKGKVPITYLEL 73
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRN 499
AV AL+DY+A DEL+F +++ ++ E WW K+ + P N
Sbjct: 8 AVKALFDYKAQREDELTFIKSA---IIQNVEKQEGGWWRGDYGGKKQLWFPSN 57
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
L+ + +EL G + VL+KG++N W N ++G VP N L
Sbjct: 13 LFGFVPETKEELQVMPGNIVFVLKKGNDN---WATVMFNGQKGLVPCNYL 59
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVP 497
A +++ + E+SF+ GE I +LR+ DEN W+ ++ +++G P
Sbjct: 12 AKFNFNGDTQVEMSFRKGERITLLRQVDEN---WYEGRIPGTSRQGIFP 57
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHS 411
+NAQDS+G L+ AA N+++V L+++GA F S
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS 315
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGA 403
D G PLH S NL +V+ LV+HG+
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGS 155
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRN 499
V A +DY A EL K E + +L ++ + WW N N+ GYVP N
Sbjct: 34 VIAKWDYTAQQDQELDIKKNERLWLL-----DDSKTWWRVRNAANRTGYVPSN 81
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L +LEG LE ++ + D +A +D G +ALH A + D L++ G +
Sbjct: 18 PLILAARLALEGMLEDLINSH---ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 74
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
+ Q++ PL AA + + L++H A T H D
Sbjct: 75 DMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMD 114
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGW-MPLHCAASCNNLAMVR 396
D S +D+G TAL+ A+ +G+ V+ V+ + GW + A N++++V
Sbjct: 87 DDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVS 146
Query: 397 FLV 399
+ +
Sbjct: 147 YFL 149
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 462 ELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 5 EVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 37
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGL 503
A YDY+A +EL+F + II + D+ +WW +L + +G P N + L
Sbjct: 9 AEYDYDAAEDNELTFVENDKIINIEFVDD---DWWLGELEKDGSKGLFPSNYVSL 60
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 462 ELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 7 EVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 39
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRK--GDENEREWWWSKLNNKEGYVP 497
A Y++ A + ELS + G+ + + + GD+ WW + N + G+ P
Sbjct: 12 ARYNFAARDMRELSLREGDVVRIYSRIGGDQG---WWKGETNGRIGWFP 57
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGL 503
A YDY+A +EL+F + II + D+ +WW +L + +G P N + L
Sbjct: 5 AEYDYDAAEDNELTFVENDKIINIEFVDD---DWWLGELEKDGSKGLFPSNYVSL 56
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 462 ELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 15 EVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 47
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGL 503
A YDY+A +EL+F + II + D+ +WW +L + +G P N + L
Sbjct: 6 AEYDYDAAEDNELTFVENDKIINIEFVDD---DWWLGELEKDGSKGLFPSNYVSL 57
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 361 IVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
+V F++Q G ++A+ +DG LH AA N ++ L++ G + T + ETA
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETA 243
>pdb|2GTJ|A Chain A, Reduced Form Of Adap Hsh3-N-Domain
pdb|2GTO|A Chain A, Oxidized Form Of Adap Hsh3-N
Length = 96
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 461 DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYV 496
+ELSFK GE I ++R D E +W GY+
Sbjct: 42 NELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYI 77
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 335 LVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
LV PS G+T +H + AGH +V ++ F
Sbjct: 152 LVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITF 185
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
A +D++A EL + G+ + + ++ D+N W+ + + + G PR + L
Sbjct: 12 AKFDFKAQTLKELPLQKGDIVYIYKQIDQN---WYEGEHHGRVGIFPRTYIEL 61
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 335 LVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
LV PS G+T +H + AGH +V ++ F
Sbjct: 113 LVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITF 146
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 438 QEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
+EK G+ A Y+Y+A DELS + G+ + +L + R + K +K+G P
Sbjct: 10 EEKYGV-------AFYNYDARGADELSLQIGDTVHILETYEGWYRGYTLRK-KSKKGIFP 61
Query: 498 RNLLGL 503
+ + L
Sbjct: 62 ASYIHL 67
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 335 LVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
LV PS G+T +H + AGH +V ++ F
Sbjct: 113 LVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITF 146
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 361 IVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
+V F++Q G ++A+ +DG LH AA N ++ L++ G + T + ETA
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETA 262
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 334 RLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
LV PS G+T +H + AGH +V ++ F
Sbjct: 103 YLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITF 137
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 441 LGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN---NKEGYVP 497
+ I+N AV ALYD+E N +EL G+ + + K + W N +K G VP
Sbjct: 1 MAIVNQRAV-ALYDFEPENDNELRLAEGDIVFISYKHGQG----WLVAENESGSKTGLVP 55
Query: 498 RNLLGLYPRVQP 509
+ +QP
Sbjct: 56 EEFVSY---IQP 64
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRNLLGLYPRV 507
A+Y Y N DEL + G+ + V+++ D+ W+ S+ K G P N + P
Sbjct: 12 AMYQYRPQNEDELELREGDRVDVMQQCDDG----WFVGVSRRTQKFGTFPGNYVA--PVS 65
Query: 508 QPSA 511
PS+
Sbjct: 66 GPSS 69
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 28.5 bits (62), Expect = 9.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDE 479
ALY Y N DEL + G+ + V+ K D+
Sbjct: 11 ALYSYIPQNDDELELRDGDIVDVMEKCDD 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,380,589
Number of Sequences: 62578
Number of extensions: 385198
Number of successful extensions: 1257
Number of sequences better than 100.0: 340
Number of HSP's better than 100.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 583
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)