RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7683
(514 letters)
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 243 bits (622), Expect = 7e-78
Identities = 134/235 (57%), Positives = 171/235 (72%), Gaps = 15/235 (6%)
Query: 284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPL--ALLLDASLEGELELVMKTARLVK---D 338
+N ++ + + V F+PL ALLLD+SLEGE +LV R++ D
Sbjct: 13 KRTNLRKTGSER-------IAHGMRVKFNPLPLALLLDSSLEGEFDLV---QRIIYEVDD 62
Query: 339 PSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
PS NDEGITALHNA+CAGH +IV+FLVQFG +VNA DSDGW PLHCAASCNN+ + +FL
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 399 VEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEAN 458
VE GA +FA T+SD +TAA KCEE EEG+ CS+FLY VQEK+GI+N G +YAL+DYE
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ 182
Query: 459 NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATP 513
N DEL K G+C+ ++ + DE+E EWWW++LN+KEGYVPRNLLGLYPR++P
Sbjct: 183 NDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKPRQRS 237
Score = 73.0 bits (180), Expect = 8e-15
Identities = 6/60 (10%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 344 DEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
G +L + G V + L ++ +V+ ++
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Score = 47.2 bits (113), Expect = 3e-06
Identities = 5/41 (12%), Positives = 9/41 (21%), Gaps = 2/41 (4%)
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
+ G + L N + HG +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLAL 40
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 229 bits (586), Expect = 1e-72
Identities = 112/208 (53%), Positives = 145/208 (69%), Gaps = 6/208 (2%)
Query: 305 KKRCVSFDPLALLLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDI 361
K R +PL LLLDA+L GELE+V + VK DPS N+EGITALHNAIC ++ I
Sbjct: 13 KARRARLNPLVLLLDAALTGELEVV---QQAVKEMNDPSQPNEEGITALHNAICGANYSI 69
Query: 362 VRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCE 421
V FL+ G +VN+ DS GW PLHCAASCN+ + LV+HGA IFATT SD TA KC+
Sbjct: 70 VDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD 129
Query: 422 EDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENE 481
EG+ C+ +L V++ +G++N+GAVYAL+DY A DELSF+ GE + VLR+ E
Sbjct: 130 PYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEE 189
Query: 482 REWWWSKLNNKEGYVPRNLLGLYPRVQP 509
+WWW+ L+ +EGYVPRN GL+PRV+P
Sbjct: 190 TDWWWAALHGQEGYVPRNYFGLFPRVKP 217
Score = 51.9 bits (125), Expect = 1e-07
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 362 VRFLVQFGCDVNAQDS---DGWMPLHCAASCNNLAMVRFLVEHGACI 405
+R +++ + + L AA L +V+ V+
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP 47
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 106 bits (266), Expect = 1e-25
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 287 NNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVK---DPSAAN 343
++ E KK V FD A+ L A G+ E V RL++ D + AN
Sbjct: 19 GSETDLEP---PVVK--RKKTKVKFDDGAVFLAACSSGDTEEV---LRLLERGADINYAN 70
Query: 344 DEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+G+TALH A + D+V+FLV+ G ++N D++GW+PLH AASC L + +L+ GA
Sbjct: 71 VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA 130
Score = 92.9 bits (232), Expect = 3e-21
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ G TALH A G+ ++++ L+Q DVN +D DGW PLH AA R
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250
Query: 398 LVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNN 446
LVE+ + A +TA +ED +L +Q+K +L++
Sbjct: 251 LVENLCDMEAVNK-VGQTAFDVADED------ILGYLEELQKKQNLLHS 292
Score = 86.8 bits (216), Expect = 4e-19
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 320 ASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
A ++ ++ LV A + + ++EG LH A G+ DI +L+ G V A
Sbjct: 80 ACIDDNVDMVKFLVENGA----NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135
Query: 376 DSDGWMPLHCAASCNNLAMVRFLV-EHGACIFATTHS 411
+S+G PL A +++ V G I A
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE 172
Score = 82.2 bits (204), Expect = 1e-17
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
+ A +G + V L++ G D+N + DG LH A +N+ MV+FLVE+
Sbjct: 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95
Query: 402 GACI 405
GA I
Sbjct: 96 GANI 99
Score = 78.7 bits (195), Expect = 3e-16
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
L A E EL+ V + + A D ++L +
Sbjct: 143 LDIAEEEAMEELL---QNEV---NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACI 405
G LH AA+ +++ L++ +
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDV 225
Score = 68.7 bits (169), Expect = 5e-13
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
A+ + G + V + DG A S + V L+E
Sbjct: 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLE 61
Query: 401 HGACI 405
GA I
Sbjct: 62 RGADI 66
Score = 37.9 bits (89), Expect = 0.006
Identities = 2/32 (6%), Positives = 6/32 (18%)
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+ D+ + + V
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRK 32
Score = 29.8 bits (68), Expect = 2.3
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
A+ G+ E LV+ D A N G TA A + + + +
Sbjct: 239 AAHWGKEEAC---RILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 98.3 bits (246), Expect = 3e-24
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
AS GE+E V L++ DP E +AL A G+ DIV L++ D+N D
Sbjct: 43 ASAFGEIETVRF---LLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
+G PL A N++ V L+ GA
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGA 126
Score = 92.1 bits (230), Expect = 5e-22
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
+ + +GEL+ + ++ + ++ G T L A G + VRFL+++G D
Sbjct: 6 IHQLAAQGELDQL---KEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+ + L A++ +V L+E
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLLLERDV 93
Score = 89.8 bits (224), Expect = 3e-21
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L AS G ++V L++ D + + G T L A+ H V L+ G D+
Sbjct: 73 LSLASTGGYTDIV-GL--LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
+ G+ P+ A + + + + H +F +
Sbjct: 130 TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165
Score = 80.5 bits (200), Expect = 5e-18
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCD-VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
++H G D ++ ++ G + VN D G+ PL A++ + VRFL+E GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Score = 64.0 bits (157), Expect = 3e-12
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
LL A ++ V L+ D + D G T + A+ G+ + + + +
Sbjct: 106 LLYAVRGNHVKCVE---ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF 162
Query: 374 AQDSDGWMP 382
+ P
Sbjct: 163 QSNLVPADP 171
Score = 40.1 bits (95), Expect = 4e-04
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 379 GWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
+ +H A+ L ++ + G + T
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTP 39
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 97.1 bits (243), Expect = 7e-24
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
A+ G++ +V L++ DP +AL A G+ DIV+ L+ G DVN D
Sbjct: 43 AAAHGQIAVVEF---LLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
+G PL A N++ V+ L+E GA
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 92.1 bits (230), Expect = 5e-22
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
+ + +GE+ + A ++ + ++EG T L A G +V FL+Q G D
Sbjct: 7 VHQLAAQGEMLYL---ATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
L A S +V+ L++ G
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGV 93
Score = 89.4 bits (223), Expect = 3e-21
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A +G ++V K L+ D + + G T L A+ H V+ L++ G D
Sbjct: 73 LSLACSKGYTDIV-KM--LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
+ G+ + A + ++ + + H +
Sbjct: 130 IETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Score = 86.3 bits (215), Expect = 5e-20
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
++H G + ++ +N D +G+ PL AA+ +A+V FL+++GA
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Score = 53.5 bits (130), Expect = 1e-08
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
LL A ++ +K L++ DP+ D G ++ A+ G+ + + + +
Sbjct: 106 LLYAVHGNHVK-CVKM--LLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162
Query: 374 AQDSD 378
+
Sbjct: 163 QNIKE 167
Score = 42.8 bits (102), Expect = 5e-05
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGACI 405
+ +H A+ + + +E I
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVI 29
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 94.8 bits (237), Expect = 1e-23
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
+ A G+L+ V K V D + + G LH A G +I+ FL+ G D+N
Sbjct: 11 FMWALKNGDLDEV-KD--YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
A D PL A +++ V+ L+ GA
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 90.1 bits (225), Expect = 7e-22
Identities = 22/65 (33%), Positives = 27/65 (41%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
A+ G D V+ V G DVN G PLH AA C L ++ FL+
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61
Query: 401 HGACI 405
GA I
Sbjct: 62 KGADI 66
Score = 73.6 bits (182), Expect = 4e-16
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+ G+LE +++ L+ D +A + IT L +A+ GH V+ L+ G D
Sbjct: 44 LHYAADCGQLE-ILEF--LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT 100
Query: 374 AQDSDGWMPLHCAASCNNLAMVR 396
+ DG + A+++
Sbjct: 101 VKGPDGLTAFEATDNQAIKALLQ 123
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 93.6 bits (234), Expect = 6e-23
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
AS++G++ V L++ DP+ + G T LH A GH +V L+Q VN
Sbjct: 17 ASIKGDIPSVEY---LLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
PLH AA ++ +V+ L+ +GA
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 88.6 bits (221), Expect = 4e-21
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
N G T LH A G V +L+Q G D N +D GW PLH A + +L +V L++
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 401 HGACI 405
H A +
Sbjct: 65 HKALV 69
Score = 84.8 bits (211), Expect = 8e-20
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L +A G L++V L++ + + + LH+A GH DIV+ L+ +G N
Sbjct: 47 LHEACNHGHLKVV---ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
A + G P+ + +++ ++ +
Sbjct: 104 AVNIFGLRPVDYTDDESMKSLLLLPEKNES 133
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 90.1 bits (224), Expect = 1e-22
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 446 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LL 501
N ALYD A + DELSF+ G+ + VL + + WW L+ ++G VP N L+
Sbjct: 3 NVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILV 62
Query: 502 GLYPR 506
G+Y +
Sbjct: 63 GMYDK 67
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 90.5 bits (226), Expect = 2e-22
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
L A+ G LE L+ A D +A + G T LH A GH ++V+ L++ G DV
Sbjct: 6 LHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
NA+D +G PLH AA +L +V+ L+E GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 85.1 bits (212), Expect = 2e-20
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
G T LH A GH ++V+ L++ G DVNA+D +G PLH AA +L +V+ L+E GA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Score = 45.4 bits (109), Expect = 1e-06
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGACI 405
+G PLH AA +L +V+ L+E GA +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV 28
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 91.7 bits (229), Expect = 4e-22
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
L A+ G+++ V RL+ P A N G TAL G I L++ G
Sbjct: 6 LSGAAARGDVQEV---RRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASP 61
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
N QD+ G P+H AA L ++ LVEHGA +
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94
Score = 87.5 bits (218), Expect = 1e-20
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
P+ + G + +H+A G D ++ LV+ G DVN D G +P+H A + A+V F
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 398 LVEH 401
L
Sbjct: 120 LAAE 123
Score = 82.5 bits (205), Expect = 7e-19
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
+ DA+ G L+ + K LV+ D + + G +H A+ GH +V FL D++
Sbjct: 72 VHDAARTGFLDTL-KV--LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLH 127
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEH 401
+D+ G PL A +V L H
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 73.2 bits (181), Expect = 1e-15
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 348 TALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
L A G VR L+ + +A + G L + A+ L++ GA
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASP 61
Score = 33.5 bits (78), Expect = 0.055
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 379 GWMPLHCAASCNNLAMVRFLVE-HGACI 405
L AA+ ++ VR L+
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHP 29
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 90.9 bits (227), Expect = 4e-22
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+ G LE+V K L++ D +A + G T LH A GH ++V+ L++ G DVN
Sbjct: 39 LHLAARNGHLEVV-KL--LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 95
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
A+D +G PLH AA +L +V+ L+E GA
Sbjct: 96 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 88.9 bits (222), Expect = 2e-21
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+ G LE+V K L++ D +A + G T LH A GH ++V+ L++ G DVN
Sbjct: 6 LHLAARNGHLEVV-KL--LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
A+D +G PLH AA +L +V+ L+E GA
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 85.5 bits (213), Expect = 3e-20
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
G T LH A GH ++V+ L++ G DVNA+D +G PLH AA +L +V+ L+E GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Score = 45.4 bits (109), Expect = 4e-06
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGACI 405
+G PLH AA +L +V+ L+E GA +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV 28
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 91.0 bits (227), Expect = 1e-21
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 320 ASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
A EG L+M+ A + N T LH A GH DIV+ L+Q+ D+NA
Sbjct: 46 ACREGRSAVVEMLIMRGA----RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
+ G +PLH A + LV +GA +
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALV 131
Score = 90.2 bits (225), Expect = 3e-21
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
+ EG + T D + +D G + LH A G +V L+ G +
Sbjct: 9 IFTQCREGNAVAVRLWLDNTE---NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
N + PLH AAS + +V+ L+++ A I
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Score = 89.8 bits (224), Expect = 3e-21
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
A+ G ++V K L++ D +A N+ G LH A G + LV G V+ +
Sbjct: 79 AASHGHRDIVQK---LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
G MP+ A + + + G + + D
Sbjct: 136 KYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171
Score = 82.9 bits (206), Expect = 8e-19
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFG-CDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
+ E + + G+ VR + D+N D G+ PLH A A+V L+
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 401 HGACI 405
GA I
Sbjct: 61 RGARI 65
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 96.0 bits (240), Expect = 1e-21
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+ EG E+V A L+ + + N G+T LH GH + L++ G V+
Sbjct: 249 LHLAAQEGHAEMV---ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
A G+ PLH A+ N+ +V+FL++H A + A T
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 341
Score = 95.3 bits (238), Expect = 3e-21
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L AS G L +V L++ P+ +N + T LH A AGH ++ ++L+Q VN
Sbjct: 18 LHVASFMGHLPIVK---NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
A+ D PLHCAA + MV+ L+E+ A T T
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT-AGHTP 116
Score = 94.9 bits (237), Expect = 4e-21
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A L++V L+ P + G T LH A ++ R L+Q+G N
Sbjct: 183 LHVAVHHNNLDIVK---LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
A+ G PLH AA + MV L+ A
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Score = 94.5 bits (236), Expect = 5e-21
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+ EG +E V L++ + +G T LH A G + L++ N
Sbjct: 117 LHIAAREGHVETV---LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
A +G PLH A NNL +V+ L+ G
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Score = 92.9 bits (232), Expect = 2e-20
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+ G +V L++ +P+ A G T LH A GH + V L++
Sbjct: 84 LHCAARIGHTNMVKL---LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
G+ PLH AA + + L+E A
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172
Score = 92.9 bits (232), Expect = 2e-20
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ G+T LH A GH IV+ L+Q G N + PLH AA + + ++
Sbjct: 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY 65
Query: 398 LVEHGACI 405
L+++ A +
Sbjct: 66 LLQNKAKV 73
Score = 92.9 bits (232), Expect = 2e-20
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
+ EG + V L+K A G T LH A G+ +V+FL+Q DVNA+
Sbjct: 285 VAQEGHVP-VADV--LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 341
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA---AVKCEEDEEGFEGCSEF 433
G+ PLH AA + +V L+++GA + SD T A + G+ ++
Sbjct: 342 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS-SDGTTPLAIAKR-----LGYISVTDV 395
Query: 434 LYSVQEKLGILN 445
L V ++ +
Sbjct: 396 LKVVTDETSFVL 407
Score = 92.2 bits (230), Expect = 3e-20
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
L A+ G++ L+ + A P+AA G+T LH A+ + DIV+ L+ G
Sbjct: 150 LHVAAKYGKVRVAELLLERDA----HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
++ +G+ PLH AA N + + R L+++G
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Score = 90.2 bits (225), Expect = 1e-19
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+ G E+ L++ +A + T LH A GH ++V+ L++ + N
Sbjct: 51 LHMAARAGHTEVA---KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+ G PLH AA ++ V L+E A
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEA 137
Score = 89.5 bits (223), Expect = 2e-19
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
A+ + ++E V ++ L++ +A + +G+T LH A GH ++V L+ + N +
Sbjct: 219 AAKQNQVE-VARS--LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
G PLH A ++ + L++HG
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKHGV 302
Score = 57.9 bits (141), Expect = 4e-09
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
G G PLH A+ +L +V+ L++ GA + ET
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN-VKVETP 50
Score = 55.2 bits (134), Expect = 3e-08
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 18/93 (19%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQF---GC 370
L A+ +G ++V L+K P+ + +G T L A G+ + L
Sbjct: 348 LHQAAQQGHTDIV---TLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 404
Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
V D V +++
Sbjct: 405 FVLVSDKHRMSFPE---------TVDEILDVSE 428
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 88.8 bits (221), Expect = 1e-21
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
+ L A AG D VR L+ G DV A+D +G PLH AA +L +V+ L+E G
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 403 ACIFATTH 410
A + A
Sbjct: 81 ADVXAQDK 88
Score = 67.6 bits (166), Expect = 3e-14
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
LL+A+ G+ + V + L+ D +A + G T LH A GH ++V+ L++ G DV
Sbjct: 28 LLEAARAGQDDEV-RI--LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFL 398
AQD G + N + L
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 64.9 bits (159), Expect = 4e-13
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 357 GHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
H LV G + + D L AA VR L+ +GA +
Sbjct: 5 HHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADV 50
Score = 27.5 bits (62), Expect = 4.5
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 386 AASCNNLAMVRFLVEHGA 403
+S ++ LV G+
Sbjct: 1 GSSHHHHHHSSGLVPRGS 18
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 89.4 bits (223), Expect = 2e-21
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+ G++E V +L++ DP+A N G + G + L+ G + N
Sbjct: 16 LATAAARGQVETV---RQLLEAGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPN 71
Query: 374 AQDSDGW-MPLHCAASCNNLAMVRFLVEHGA 403
D P+H AA L + L GA
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGA 102
Score = 87.5 bits (218), Expect = 7e-21
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
L A G + VR L++ G D NA + G P+ + +
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAEL 62
Query: 398 LVEHGA 403
L+ HGA
Sbjct: 63 LLLHGA 68
Score = 84.8 bits (211), Expect = 6e-20
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 338 DPSAANDEGIT-ALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
+P+ A+ +T +H+A G D + L + G ++ D+ G +P+ A + + R
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128
Query: 397 FLVEHGA 403
+L
Sbjct: 129 YLHAATG 135
Score = 55.9 bits (136), Expect = 8e-10
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
++ L AA+ + VR L+E GA
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA 36
Score = 46.3 bits (111), Expect = 2e-06
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCD 371
+ DA+ EG L+ + L + + G + A GH DI R+L D
Sbjct: 82 VHDAAREGFLDTL---VVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 88.6 bits (221), Expect = 2e-21
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L +A+ G E V K L+ D +A + +G T LH A GH +IV+ L+ G DVN
Sbjct: 13 LHNAAKNGHAEEV-KK--LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
A+ DG P H A + +V+ L GA
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 87.4 bits (218), Expect = 4e-21
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
+ +G T LHNA GH + V+ L+ G DVNA+ DG PLH AA + +V+ L+
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 402 GA 403
GA
Sbjct: 65 GA 66
Score = 62.4 bits (153), Expect = 3e-12
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
A+ G E+V K L+ D +A + +G T H A GH +IV+ L G DVNA+
Sbjct: 49 AAKNGHAEIV-KL--LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Query: 377 SDGWMPLH 384
H
Sbjct: 106 WGSSHHHH 113
Score = 48.1 bits (116), Expect = 3e-07
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
DG PLH AA + V+ L+ GA +
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV 35
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 89.8 bits (224), Expect = 2e-21
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+ G +E V L++ +P+A N G + G + L+ G + N
Sbjct: 16 LATAAARGRVEEV---RALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPN 71
Query: 374 AQDSDGW-MPLHCAASCNNLAMVRFLVEHGACIFATT 409
D P+H AA L + L GA +
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108
Score = 89.5 bits (223), Expect = 3e-21
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 338 DPSAANDEGIT-ALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
+P+ A+ +T +H+A G D + L + G ++ +D+ G +P+ A + + R
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128
Query: 397 FLVEHGACIFATTHSDHETAA 417
+L + H AA
Sbjct: 129 YLRAAAGGTRGSNH-ARIDAA 148
Score = 84.5 bits (210), Expect = 2e-19
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
++ + L A G + VR L++ G + NA +S G P+ + +
Sbjct: 3 PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAE 61
Query: 397 FLVEHGA 403
L+ HGA
Sbjct: 62 LLLLHGA 68
Score = 61.0 bits (149), Expect = 2e-11
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
+ DA+ EG L+ + L + + G + A GH D+ R+L
Sbjct: 82 VHDAAREGFLDTL---VVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR 138
Query: 374 AQDSDGWMPLHCAASCNNLAMV 395
+ A+ +
Sbjct: 139 GSN-----HARIDAAEGPSDIP 155
Score = 47.5 bits (114), Expect = 1e-06
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
+ L AA+ + VR L+E GA
Sbjct: 4 AAGSSMEPSADWLATAAARGRVEEVRALLEAGANP 38
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 93.3 bits (233), Expect = 2e-21
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
+ +A++ G + + L+ + + ++ LH A GH V+ L++ G VN
Sbjct: 63 MHEAAIHGHQLSL-RN--LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTH 410
+D PL A + V L++HGA + +
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD 156
Score = 87.5 bits (218), Expect = 2e-19
Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 13/136 (9%)
Query: 284 SDSNNQEIAEI---KSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPS 340
S ++ + + + + GK+ D G L
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMDGKQG--GMDGSKPAGPRDFPGIRLLS-------NPLM 53
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
+ +H A GH +R L+ G VN +D PLH A +L+ V+ L++
Sbjct: 54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK 113
Query: 401 HGACIFATTHSDHETA 416
HGA + T +D T
Sbjct: 114 HGAQVNGVT-ADWHTP 128
Score = 86.8 bits (216), Expect = 3e-19
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
+ + +H A GH + V L+ +G +++ + S PL+ A A V+ L+E
Sbjct: 153 PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 212
Query: 402 GACI 405
GA +
Sbjct: 213 GADV 216
Score = 82.5 bits (205), Expect = 1e-17
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
+ +A+ G +E + + L+ + T L+ A V+ L++ G DVN
Sbjct: 161 IHEAARRGHVE-CVNS--LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
Q PLH + + L++ GA
Sbjct: 218 -QGKGQDSPLHAVVRTASEELACLLMDFGADT 248
Score = 79.8 bits (198), Expect = 7e-17
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
+ LH + ++ L+ FG D A++++G P+ + LA + FL
Sbjct: 218 QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLERE 276
Query: 402 GACI 405
GA +
Sbjct: 277 GASL 280
Score = 52.1 bits (126), Expect = 1e-07
Identities = 17/95 (17%), Positives = 25/95 (26%), Gaps = 32/95 (33%)
Query: 353 AICAGHFDIVRFLVQFGCDVNAQDS-----DGWMPL------------------------ 383
H LV G + + D DG P
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61
Query: 384 --HCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
H AA + +R L+ G + T +DH +
Sbjct: 62 PMHEAAIHGHQLSLRNLISQGWAVNIIT-ADHVSP 95
Score = 37.1 bits (87), Expect = 0.010
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 7/61 (11%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L EL L+ D A N EG + + FL + G +
Sbjct: 226 LHAVVRTASEELACL---LMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLP 281
Query: 374 A 374
Sbjct: 282 K 282
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 94.5 bits (236), Expect = 2e-21
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D A + G+ LHNA GH+++ L++ G VNA D + PLH AAS N + +
Sbjct: 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142
Query: 398 LVEHGACI 405
L+ HGA
Sbjct: 143 LLSHGADP 150
Score = 94.5 bits (236), Expect = 2e-21
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
LL+A+ G E +M L + A++ T LH A IV+ L+Q G DV+
Sbjct: 28 LLEAARSGNEEKLMAL--LTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH 85
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
A+D G +PLH A S + + L++HGAC+
Sbjct: 86 AKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117
Score = 90.6 bits (226), Expect = 5e-20
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ + N + +T LH A H D++ L + G +NA DS G LH AA +L R
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRL 298
Query: 398 LVEHGACIFATTHSDHETA 416
L+ +G+ + TA
Sbjct: 299 LLSYGSDPSIISL-QGFTA 316
Score = 85.6 bits (213), Expect = 2e-18
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHF---DIVRFLVQFGCDVN 373
LL A+ E +L V KT L TALH A+ + H + L++ G +VN
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
++ D PLH AA + ++ L +HGA +
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273
Score = 84.9 bits (211), Expect = 4e-18
Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 13/118 (11%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
A G E+ + L+K +A + T LH A ++ L+ G D +
Sbjct: 98 ACSYGHYEVT-EL--LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA-------AVKCEEDEEGF 427
G + A + + + + + + A +D + ++ +
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212
Score = 82.2 bits (204), Expect = 3e-17
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 331 KTARLVKDPSA----ANDEGITALHNAICAGHFD-IVRFLVQFGCDVNAQDSDGWMPLHC 385
K+A + DPSA + L A +G+ + ++ L + +A D PLH
Sbjct: 5 KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64
Query: 386 AASCNNLAMVRFLVEHGACI 405
AA N + +V+ L++HGA +
Sbjct: 65 AAGYNRVRIVQLLLQHGADV 84
Score = 73.3 bits (181), Expect = 2e-14
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
A+ + VM+ L K +A + G TALH A AGH R L+ +G D +
Sbjct: 254 AAERAHND-VMEV--LHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS 310
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
G+ V+ ++
Sbjct: 311 LQGFTAAQMGNEA-----VQQILSEST 332
Score = 54.4 bits (132), Expect = 3e-08
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
A+L G L+ + L+ DPS + +G TA + V+ ++ + D
Sbjct: 287 AALAGHLQTC-RL--LLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD 338
Query: 377 SDGWMPLHCAASCNN 391
D L A+ +
Sbjct: 339 VDY--RLLEASKAGD 351
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 92.9 bits (232), Expect = 3e-21
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
DP G T A AG +++ + G DVN D G+ AA + ++F
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 398 LVEHGA 403
L + GA
Sbjct: 124 LYKRGA 129
Score = 87.5 bits (218), Expect = 2e-19
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD-GWMPLHCAASCNNLAMVRFLVE 400
A E L A+ D+V+ L++ G +VN Q+ + GW PLH A + +V L+
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Query: 401 HGACIFATTHSDHETA 416
HGA + T
Sbjct: 61 HGADPVLRK-KNGATP 75
Score = 86.4 bits (215), Expect = 4e-19
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
+ G T LHNA+ DIV L++ G D + +G P AA ++ +++ + G
Sbjct: 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95
Query: 403 A 403
A
Sbjct: 96 A 96
Score = 86.0 bits (214), Expect = 7e-19
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 317 LLDASLEGELELVMKTAR-LVK---DPSAANDEGITALHNAICAGHFDIVRFLV-QFGCD 371
L+ A L + V L+ D + + G T L A+ H +V+ L+ Q +
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
+N DSDG L A + L + GA
Sbjct: 246 INDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279
Score = 79.4 bits (197), Expect = 1e-16
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFD----IVRFLVQF 368
L+DA+ +G +E++ L+ D +A ++ G AL +A+ + I L+
Sbjct: 152 LMDAAEKGHVEVL---KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH-GACI 405
G DVN + G PL A +L +V+ L+E I
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246
Score = 74.8 bits (185), Expect = 4e-15
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
L A++ G ++ + K A D + + G TA A G ++FL + G +V
Sbjct: 76 FLLAAIAGSVKLLKLFLSKGA----DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 373 NAQD----------SDGWMPLHCAASCNNLAMVRFLVEH-GA 403
N + G L AA ++ +++ L++ GA
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173
Score = 49.0 bits (118), Expect = 1e-06
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
L+ A + L LV RL++ + + + +G TAL A+ I L + G
Sbjct: 223 LILAVEKKHLGLV---QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279
Query: 373 NAQD 376
+ D
Sbjct: 280 DCGD 283
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 92.1 bits (230), Expect = 4e-21
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ + ++ LH A GH V+ L++ G VN +D PL A + V
Sbjct: 28 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 87
Query: 398 LVEHGA 403
L++HGA
Sbjct: 88 LLQHGA 93
Score = 90.6 bits (226), Expect = 1e-20
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ + T L NA +G +D V L+Q G V +SD P+H AA ++ V
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNS 119
Query: 398 LVEHGACI 405
L+ +G I
Sbjct: 120 LIAYGGNI 127
Score = 87.1 bits (217), Expect = 2e-19
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
+ + +H A GH + V L+ +G +++ + S PL+ A A V+ L+E
Sbjct: 97 PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 156
Query: 402 GACIFATTHSDHETA 416
GA + ++
Sbjct: 157 GADVNQGK--GQDSP 169
Score = 85.6 bits (213), Expect = 6e-19
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
+ +H A GH +R L+ G VN +D PLH A +L+ V+ L++HGA +
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 406 FATTHSDHETA 416
T D T
Sbjct: 63 NGVTA-DWHTP 72
Score = 83.6 bits (208), Expect = 3e-18
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ T L+ A V+ L++ G DVN Q PLH A + +
Sbjct: 126 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACL 184
Query: 398 LVEHGACI 405
L++ GA
Sbjct: 185 LMDFGADT 192
Score = 79.4 bits (197), Expect = 8e-17
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
+ LH ++ L+ FG D A++++G P+ + L + +E
Sbjct: 162 QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL--AQLFLER 219
Query: 402 GA 403
Sbjct: 220 EG 221
Score = 78.2 bits (194), Expect = 2e-16
Identities = 10/90 (11%), Positives = 23/90 (25%), Gaps = 8/90 (8%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L + EL L+ D A N EG + + + ++ +
Sbjct: 170 LHAVARTASEELA---CLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPS 224
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
C + + + ++
Sbjct: 225 LMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 45.5 bits (109), Expect = 2e-05
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
W P+H AA + +R L+ G + T +DH +
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT-ADHVSP 39
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 89.0 bits (222), Expect = 6e-21
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
LL+A+ G + L+ A D +A + G T LH A GH +IV L++ G DV
Sbjct: 18 LLEAARAGRDDEVRILMANGA----DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
NA D G PL AA +L +V L+++GA +
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106
Score = 87.4 bits (218), Expect = 2e-20
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+ G LE +++ L+K D +A + G+T L A GH +IV L++ G DVN
Sbjct: 51 LHLAAFNGHLE-IVEV--LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
A D +G PLH AA +L +V L+++GA
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Score = 83.2 bits (207), Expect = 6e-19
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+L G LE+V + L+K D +A + EG T LH A GH +IV L++ G DVN
Sbjct: 84 LRLAALFGHLEIV-EV--LLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEH 401
AQD G + N + L +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 82.8 bits (206), Expect = 8e-19
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
+ L A AG D VR L+ G DVNA+D+ GW PLH AA +L +V L+++G
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 403 ACI 405
A +
Sbjct: 71 ADV 73
Score = 49.7 bits (120), Expect = 3e-07
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 369 GCDVN-AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
G + SD L AA VR L+ +GA
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGA 38
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 88.6 bits (221), Expect = 6e-21
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+P + G +H+A AG D ++ L++F DVN +D++G +PLH AA +L +V F
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 398 LVEHGA 403
LV+H A
Sbjct: 122 LVKHTA 127
Score = 84.7 bits (211), Expect = 2e-19
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
L A+ G+LE L+ + +A N G TAL G+ +I R L+ G +
Sbjct: 9 LASAAARGDLEQLTSLLQNNV----NVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANP 63
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+ +D G+ +H AA L ++ L+E A
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Score = 83.2 bits (207), Expect = 4e-19
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFG-CDV 372
+ DA+ G L+ + +T L++ D + ++EG LH A GH +V FLV+ +V
Sbjct: 74 IHDAARAGFLDTL-QT--LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
++ G A +V + +GA
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 80.9 bits (201), Expect = 3e-18
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
+ L +A G + + L+Q +VNAQ+ G L N + R L+ G
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60
Query: 403 ACI 405
A
Sbjct: 61 ANP 63
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 89.4 bits (223), Expect = 7e-21
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 315 ALLLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCD 371
ALL A+ ++ L + EG T L+ A+ +I + L+ G D
Sbjct: 8 ALLEAANQRDTKKVK---EILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+N Q+S P A + ++ ++++H
Sbjct: 65 INLQNSISDSPYLYAGAQGRTEILAYMLKHAT 96
Score = 84.4 bits (210), Expect = 5e-19
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
E L A + L V+ D++G PL+ A N++ + + L++ G
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 403 A 403
A
Sbjct: 63 A 63
Score = 82.1 bits (204), Expect = 3e-18
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 12/128 (9%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG-CD 371
L A ++E L+ + A D + N + A G +I+ ++++ D
Sbjct: 43 LNIAVHNNDIEIAKALIDRGA----DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA---AVKCEEDEEGFE 428
+N + G L AA ++ V+ L+E G + TA AV E + ++
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 429 GCSEFLYS 436
+ L
Sbjct: 159 DIVKLLME 166
Score = 79.4 bits (197), Expect = 2e-17
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 317 LLDASLEGELELVMKTARL-----VKDPSAANDEGITALHNAICA-----GHFDIVRFLV 366
L+ A+ +G ++ +L +D ND G TAL A+ + DIV+ L+
Sbjct: 110 LIPAAEKGHID----NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165
Query: 367 QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
+ G D + +D+ G + A + + L ++
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 42.4 bits (101), Expect = 1e-04
Identities = 3/31 (9%), Positives = 9/31 (29%)
Query: 375 QDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
+ + L A + + L + +
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQV 32
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 85.5 bits (212), Expect = 8e-21
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLGLYPRV 507
+A+Y ++A N +ELS + + +L D EWW +++N K+GYVP N +
Sbjct: 16 YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG 75
Query: 508 QPS 510
S
Sbjct: 76 PSS 78
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 93.0 bits (232), Expect = 8e-21
Identities = 17/68 (25%), Positives = 28/68 (41%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ ++DE + +H A G D VR L++ G Q+ G LH A + ++
Sbjct: 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY 71
Query: 398 LVEHGACI 405
L G
Sbjct: 72 LASVGEVH 79
Score = 90.7 bits (226), Expect = 4e-20
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 317 LLDASLEGELELV---MKTARLVK--DPSAANDEGITALHNAICAGHFDIVRFLVQFGCD 371
L+ A E + M T AN +G + LH AI D+ V+ G D
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
VN +D++ +PL+ + + + + L++ H
Sbjct: 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278
Score = 83.8 bits (208), Expect = 9e-18
Identities = 7/69 (10%), Positives = 19/69 (27%)
Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
+ + A ++++ L + +V + G A+ R
Sbjct: 281 TTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKR 340
Query: 397 FLVEHGACI 405
+ A +
Sbjct: 341 MKLAPSAPV 349
Score = 83.8 bits (208), Expect = 1e-17
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
+ A+ +G+ + V RL++ P+ N G TALH A G D ++L G +
Sbjct: 24 IHVAARKGQTDEV---RRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS 80
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
G P+H A N +V LVE
Sbjct: 81 LW--HGQKPIHLAVMANKTDLVVALVEGAK 108
Score = 79.5 bits (197), Expect = 3e-16
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 13/96 (13%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAG--HFDIVRFLVQFGCDVNA 374
+ E E+ + +G TALH + G + ++++ LVQ G A
Sbjct: 115 ESLLNECDEREVNEI------GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168
Query: 375 QDSDGWMPLHCAASCNNLAMVRFLVE-----HGACI 405
+D PL A N + +++ +
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL 204
Score = 74.1 bits (183), Expect = 2e-14
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 19/102 (18%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQ--------- 367
A L ++ M R V+ D + ++E L+ ++ A + + L+Q
Sbjct: 218 AILINWEDVAM---RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA 274
Query: 368 ----FGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
G V + AA + +++ L E +
Sbjct: 275 CPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316
Score = 59.9 bits (146), Expect = 6e-10
Identities = 3/49 (6%), Positives = 10/49 (20%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCA 386
+ + + G + R + V + +
Sbjct: 315 EVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 57.2 bits (139), Expect = 5e-09
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
+ D + +H AA VR L+E G
Sbjct: 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP 46
Score = 52.2 bits (126), Expect = 2e-07
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 16/78 (20%)
Query: 345 EGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE---- 400
G +H A+ A D+V LV+ G MP C+ +
Sbjct: 83 HGQKPIHLAVMANKTDLVVALVEGA------KERGQMPESLLNECDEREVNEIGSHVKHC 136
Query: 401 ------HGACIFATTHSD 412
H + +
Sbjct: 137 KGQTALHWCVGLGPEYLE 154
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 90.6 bits (226), Expect = 8e-21
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
A L+ A D A N +G+TALH A+ + V+ L++ G D+
Sbjct: 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI 142
Query: 373 NAQDS-DGWMPLHCAASCNNLAMVRFLVEHGACI 405
+A D G PL A N+L+MV+ L++HGA +
Sbjct: 143 DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176
Score = 86.0 bits (214), Expect = 3e-19
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFG----CDVNAQDSDGWMPLHCAASCNNLA 393
P A + G TA H A +R L+ D+ A++ DG LH A +
Sbjct: 71 SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 130
Query: 394 MVRFLVEHGACIFATTHSDHETA 416
V+ L+E GA I A +
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSP 153
Score = 85.6 bits (213), Expect = 4e-19
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQF----GCDVNAQDSDGWMPLHCAASCNNLAMVR 396
A+++G T LH A+ G+ V LV G +++ ++ PLH A ++VR
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 397 FLVEHGACI 405
LV GA
Sbjct: 64 LLVTAGASP 72
Score = 85.2 bits (212), Expect = 6e-19
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
L+ A L L+ A + +A G +ALH+A G +VR LV+ G D
Sbjct: 154 LIHAVENNSLSMVQLLLQHGA----NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+ ++ PL A S + ++R A
Sbjct: 210 SLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 84.8 bits (211), Expect = 7e-19
Identities = 18/66 (27%), Positives = 26/66 (39%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ N+ T LH A+ +VR LV G A D G H A + +R
Sbjct: 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97
Query: 398 LVEHGA 403
L++ A
Sbjct: 98 LLDSAA 103
Score = 84.4 bits (210), Expect = 9e-19
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
G + L +A+ +V+ L+Q G +VNAQ G LH A+ L +VR LV G
Sbjct: 147 IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG 206
Query: 403 A 403
A
Sbjct: 207 A 207
Score = 47.4 bits (114), Expect = 3e-06
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVE----HGACIFATTHSDHETA 416
D DG PLH A NL V LV G + + +T
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTP 49
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 90.4 bits (225), Expect = 9e-21
Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 6/101 (5%)
Query: 317 LLDASLEGELELVMKTARLVKDPSA-ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
L +G +A E T A + L++ DV+A
Sbjct: 19 YLIEWKDGHSPSW----VPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAV 73
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
D +G L A + VR L E GA + TA
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTA 114
Score = 83.0 bits (206), Expect = 3e-18
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDE-GITALHNAICAGHFDIVRFLVQFGCDV 372
LL + G + V L + D + G+TALH A ++V LV+ G D+
Sbjct: 81 LLFVAGLGSDKCVRL---LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 137
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
+D G L A ++ G I
Sbjct: 138 EVEDERGLTALELAREILKTTPKGNPMQFGRRI 170
Score = 67.6 bits (166), Expect = 6e-13
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 6/75 (8%)
Query: 331 KTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN 390
+ +++ S EG GH DV + + P AA
Sbjct: 2 EVNKIIG--SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKA 56
Query: 391 NLAMVRFLVEHGACI 405
+ + L+ +
Sbjct: 57 DEQALSQLL-EDRDV 70
Score = 58.0 bits (141), Expect = 1e-09
Identities = 15/101 (14%), Positives = 24/101 (23%), Gaps = 25/101 (24%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDS-------------------- 377
D ++ G+TAL A +QFG + +
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK 195
Query: 378 --DGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
G + + H A A D+E
Sbjct: 196 RGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVA---KDYEDG 233
Score = 45.3 bits (108), Expect = 2e-05
Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 10/72 (13%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
+L+ + E+ + +G + D + A+D
Sbjct: 178 VLEGQVFEYAEVD--------EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD 229
Query: 377 SDGWMPLHCAAS 388
+ L A +
Sbjct: 230 YED--GLEYAVA 239
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 88.7 bits (221), Expect = 1e-20
Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 6/101 (5%)
Query: 317 LLDASLEGELELVMKTARLVKDPSA-ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
L +G +A E T A + L++ DV+A
Sbjct: 18 YLIEWKDGHSPSW----VPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAV 72
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
D +G L A + VR L E GA + TA
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTA 113
Score = 82.9 bits (206), Expect = 1e-18
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDE-GITALHNAICAGHFDIVRFLVQFGCDV 372
LL + G + V L + D + G+TALH A ++V LV+ G D+
Sbjct: 80 LLFVAGLGSDKCV---RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 136
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
+D G L A ++ G I
Sbjct: 137 EVEDERGLTALELAREILKTTPKGNPMQFGRRI 169
Score = 67.9 bits (167), Expect = 2e-13
Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 4/66 (6%)
Query: 340 SAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV 399
S EG GH DV + + P AA + + L+
Sbjct: 8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL 64
Query: 400 EHGACI 405
+
Sbjct: 65 -EDRDV 69
Score = 42.5 bits (101), Expect = 7e-05
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+ E+V LV+ D ++ G+TAL A +QFG +
Sbjct: 114 LHMAAGYVRPEVV---EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 170
Query: 374 AQD 376
+
Sbjct: 171 LEK 173
Score = 41.7 bits (99), Expect = 1e-04
Identities = 3/32 (9%), Positives = 6/32 (18%)
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+ +G M + A
Sbjct: 7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA 38
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 90.2 bits (225), Expect = 1e-20
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
++ A+ ++ L+ K + D + ++E LH A +G DI L+ CD+
Sbjct: 115 MIWATEYKHVDLVKLLLSKGS----DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+A + G PLH AA N V + +
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDS 201
Score = 89.8 bits (224), Expect = 1e-20
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ + + LH A AGH DI LVQ G +++ D PL AA N+L V++
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 398 LVEHGACI 405
L++ GA +
Sbjct: 63 LIKAGALV 70
Score = 89.4 bits (223), Expect = 2e-20
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
A+ G +++ LV+ + +++ T L A H + V++L++ G V+ +D
Sbjct: 18 AAEAGHVDICHM---LVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD 74
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
++G LH AA + +V++L+ +G
Sbjct: 75 AEGSTCLHLAAKKGHYEVVQYLLSNGQ 101
Score = 87.9 bits (219), Expect = 7e-20
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
L A+ +G E L+ D + +D G T + A H D+V+ L+ G D+
Sbjct: 81 LHLAAKKGHYEVVQYLLSNGQ---MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI 137
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
N +D++ + LH AA + + L+ +
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Score = 82.1 bits (204), Expect = 6e-18
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
L A+ G ++ L+ D A N G + LH A +D V + DV
Sbjct: 148 LHWAAFSGCVDIAEILLAAKC----DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
++ +G PL CA+ + + + +
Sbjct: 204 TLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 39.3 bits (93), Expect = 0.001
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCD 371
L A+ E + + + + D + N EG T L A + + D
Sbjct: 181 LHIAARENRYDCVVLFLSRDS----DVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 89.4 bits (223), Expect = 1e-20
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D + ++G+T LH A+ F++ +FL++ G V +D +PLH AAS +L ++
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 398 LVEHGA 403
L G
Sbjct: 159 LCGLGK 164
Score = 82.1 bits (204), Expect = 4e-18
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 336 VKDPSAANDEGITALHNAICAGHFDIVRFLVQ--FGCDVNAQDSDGWMPLHCAASCNNLA 393
V +D G T H A G+ ++V+ L D+N + G LH A
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 394 MVRFLVEHGACI 405
+ +FL+E+GA +
Sbjct: 122 VSQFLIENGASV 133
Score = 82.1 bits (204), Expect = 5e-18
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A +E E V + L + +G LH ++ +I FL+ +VN
Sbjct: 6 LHQACMENEFFKVQEL--LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 374 AQDS---DGWMPLHCAASCNNLAMVRFLVEHGA 403
D GW P H A S NL +V+ L +
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Score = 79.0 bits (196), Expect = 6e-17
Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 320 ASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG-CDVNA 374
A + E L+ A + LH A G ++ L G VN
Sbjct: 114 AVGKKWFEVSQFLIENGA----SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169
Query: 375 QDSDGWMPLHCAASCNNLAMVRFLVE-HGACIFATTHSDHETA 416
QD GW PL A + + LVE +GA + A
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN-KGAKA 211
Score = 78.3 bits (194), Expect = 1e-16
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 346 GITALHNAICAGHFDIVR-FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
LH A F V+ L + +D DG +PLH + S + FL+
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Score = 68.6 bits (169), Expect = 2e-13
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
+ + +G T L +A+ GH D LV ++G + + D+ G A N + +
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKK 222
Query: 397 FLVEH 401
F + +
Sbjct: 223 FFLNN 227
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 89.4 bits (223), Expect = 2e-20
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
+D + A G ++ R LV+ G DV D + LH AA N + +V++ +
Sbjct: 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63
Query: 401 HGA 403
GA
Sbjct: 64 KGA 66
Score = 88.6 bits (221), Expect = 3e-20
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
++ A+ G E LV+ D + E +T LH A D+V++ + G V+
Sbjct: 13 IVKATQYGIYERC---RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69
Query: 374 AQDSD-GWMPLHCAASCNNLAMVRFLVEHGA 403
D PLH A +L+MV L+++GA
Sbjct: 70 QLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100
Score = 88.3 bits (220), Expect = 5e-20
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 340 SAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV 399
D T LH A GH +V L+++G D + D +G +H AA + ++V +L+
Sbjct: 70 QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129
Query: 400 EHGA 403
G
Sbjct: 130 AKGQ 133
Score = 86.7 bits (216), Expect = 2e-19
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+ +G L ++ L+K DPS + EG + +H A GH IV +L+ G DV+
Sbjct: 80 LHWATRQGHLS-MVVQ--LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 374 AQDSDGWMPLHCAASCNN-LAMVRFLVEHGACIFATTHSDHETA 416
D +G PL AA + + R L+ + TA
Sbjct: 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA 180
Score = 85.6 bits (213), Expect = 4e-19
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
TALH A+ AG+ ++ L++ G +V+AQ+ G L A N+ M+ L E
Sbjct: 174 KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233
Query: 403 A 403
Sbjct: 234 Q 234
Score = 82.1 bits (204), Expect = 6e-18
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGH-FDIVRFLVQFGCDV 372
+ A+ G +V A L+ D + G+T L A H D R L+ F V
Sbjct: 113 IHLAAQFGHTSIV---AYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169
Query: 373 NAQD-SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
N D LH A N ++ L+E GA + A E+A
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI-KGESA 213
Score = 51.3 bits (124), Expect = 2e-07
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+ D + A R LVE G
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGY 33
Score = 42.8 bits (102), Expect = 1e-04
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
L A L G L+ A + A N +G +AL A + ++ L +
Sbjct: 181 LHWAVLAGNTTVISLLLEAGA----NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236
Query: 373 NAQD 376
+
Sbjct: 237 GYDN 240
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 90.3 bits (225), Expect = 2e-20
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
G T LH A+ A ++ L++ G D A+ G PL A N + R L HG
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248
Query: 403 ACI------------FATTHSDHETAAVKCEEDE 424
A + + SD + E D+
Sbjct: 249 APEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYDD 282
Score = 89.1 bits (222), Expect = 6e-20
Identities = 18/63 (28%), Positives = 21/63 (33%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
ND G TALH A G V L G V + G LH A L++
Sbjct: 40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 401 HGA 403
Sbjct: 100 PRP 102
Score = 86.8 bits (216), Expect = 3e-19
Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 17/136 (12%)
Query: 284 SDSNNQEIAEI----------KSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTA 333
A + ++ + +D+ E E
Sbjct: 86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP--- 142
Query: 334 RLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD-GWMPLHCAASC 389
R A N +G T LH A+ ++VR L G D+N + G PLH A
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202
Query: 390 NNLAMVRFLVEHGACI 405
+++ L++ GA
Sbjct: 203 QAASVLELLLKAGADP 218
Score = 86.4 bits (215), Expect = 4e-19
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCD---VNAQDSDGWMPLHCAASCNNLAMVRF 397
++G TALH A+ H + FL+ F ++ Q+ G LH AA + V
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63
Query: 398 LVEHGA 403
L GA
Sbjct: 64 LYAAGA 69
Score = 73.7 bits (182), Expect = 8e-15
Identities = 15/76 (19%), Positives = 27/76 (35%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
+ A ++ + + + A++ DG PLH A + MVR L +
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179
Query: 401 HGACIFATTHSDHETA 416
GA + + T
Sbjct: 180 AGADLNKPEPTCGRTP 195
Score = 72.2 bits (178), Expect = 3e-14
Identities = 14/65 (21%), Positives = 23/65 (35%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
DP+A G T L +A+ + + R L G D P + S ++
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDE 276
Query: 398 LVEHG 402
E+
Sbjct: 277 GDEYD 281
Score = 62.2 bits (152), Expect = 7e-11
Identities = 20/106 (18%), Positives = 28/106 (26%), Gaps = 20/106 (18%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A++ GE V K L A G TALH A L+Q
Sbjct: 49 LHLAAILGEASTVEK---LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP 105
Query: 374 AQDSDGWM-------------PLHCAASCNNLA-MVRFLVEHGACI 405
SD ++ P + N + +
Sbjct: 106 RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL 151
Score = 48.7 bits (117), Expect = 1e-06
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
DG LH A + + FL+ A
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSA 33
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 88.6 bits (221), Expect = 2e-20
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D +A +D G +ALH A + D L++ G + + Q++ PL AA + +
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176
Query: 398 LVEHGACIFATTHSDHETA 416
L++H A T H
Sbjct: 177 LLDHFANRDITDH-MDRLP 194
Score = 85.9 bits (214), Expect = 2e-19
Identities = 14/73 (19%), Positives = 26/73 (35%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ N+ T L A G ++ + L+ + + D +P A + +VR
Sbjct: 150 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 209
Query: 398 LVEHGACIFATTH 410
L E+ H
Sbjct: 210 LDEYNLVRSPQLH 222
Score = 85.5 bits (213), Expect = 3e-19
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
+ G TALH A D + L++ D N QD+ G PLH A S + + + L+
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79
Query: 401 HGA 403
+ A
Sbjct: 80 NRA 82
Score = 84.8 bits (211), Expect = 6e-19
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
D A +G T L A ++ L+ DVNA D G LH AA+ NN+
Sbjct: 83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 142
Query: 397 FLVEHGACI 405
L+++GA
Sbjct: 143 VLLKNGANK 151
Score = 81.7 bits (203), Expect = 7e-18
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFG-CDVNAQDSDGWMPLHCAASCNNLAMVR 396
D + ++ G T LH A+ A + + L++ D++A+ DG PL AA M+
Sbjct: 50 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 109
Query: 397 FLVEHGA 403
L+ A
Sbjct: 110 DLINSHA 116
Score = 62.4 bits (153), Expect = 2e-11
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 356 AGHFDIVRFLVQFGCDV-NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
++ + G + N D G LH AA + + L+E A
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA 51
Score = 29.7 bits (68), Expect = 2.1
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 390 NNLAMVRFLVEHGACIFATTHSDHETA 416
+ A++ + GA + T ETA
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETA 28
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 88.1 bits (219), Expect = 4e-20
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 6/90 (6%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
+ +G L+ + + LH A G+ +R + VN D
Sbjct: 49 WWKGTSKGRTGLIPSN-----YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD 103
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEH-GACI 405
G L+ A + +V L +
Sbjct: 104 KAGSTALYWACHGGHKDIVEMLFTQPNIEL 133
Score = 84.6 bits (210), Expect = 7e-19
Identities = 16/76 (21%), Positives = 33/76 (43%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ + N G TALH A G+ DIV+ L+ G + ++ + + A + ++++
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKK 191
Query: 398 LVEHGACIFATTHSDH 413
A + D+
Sbjct: 192 KQGTDAVRTLSNAEDY 207
Score = 76.1 bits (188), Expect = 5e-16
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 5/87 (5%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
+ A E + D D T G ++ V Q
Sbjct: 16 VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN-----YVAEQA 70
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
PLH AA NL+ +R +++
Sbjct: 71 ESIDNPLHEAAKRGNLSWLRECLDNRV 97
Score = 62.6 bits (153), Expect = 2e-11
Identities = 6/78 (7%), Positives = 13/78 (16%), Gaps = 6/78 (7%)
Query: 339 PSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
P G + A+ L D+ S ++
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI--- 61
Query: 399 VEHGACIFATTHSDHETA 416
+ +
Sbjct: 62 --PSNYVAEQAE-SIDNP 76
Score = 61.5 bits (150), Expect = 6e-11
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L A+ +G ++V L+ N E A A A +++
Sbjct: 144 LHAAAWKGYADIV---QLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200
Query: 374 AQDSDGWMPLHCAA 387
+++ ++ +
Sbjct: 201 LSNAEDYLDDEDSD 214
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 85.5 bits (213), Expect = 6e-20
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
A T LH A GH +IV L++ G DVNA+D LH A N+ +V
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118
Query: 398 LVEHGA 403
L+++GA
Sbjct: 119 LIKYGA 124
Score = 84.0 bits (209), Expect = 2e-19
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
+ G + LH A GHF L++ G +A+ PLH AAS + +V L++
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 401 HGACI 405
HGA +
Sbjct: 89 HGADV 93
Score = 75.1 bits (186), Expect = 3e-16
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D +A + +TALH A H ++V L+++G DV+ Q + N +
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Query: 398 L 398
L
Sbjct: 152 L 152
Score = 73.2 bits (181), Expect = 1e-15
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 345 EGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+ L A AG D VR L+ G D G PLH AA + + L+ G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
Score = 43.9 bits (105), Expect = 2e-05
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGACI 405
D L AA VR L+ +GA
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPF 28
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 85.9 bits (214), Expect = 6e-20
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
LL+A+ G++E V +L + T LH A +V +L+Q G DV
Sbjct: 12 LLEAAKAGDVETV---KKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
+A+D G +PLH A S + + LV+HGA +
Sbjct: 69 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 101
Score = 84.7 bits (211), Expect = 1e-19
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D A + G+ LHNA GH+++ LV+ G VN D + PLH AA+ + +
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126
Query: 398 LVEHGA 403
L++HGA
Sbjct: 127 LLQHGA 132
Score = 80.5 bits (200), Expect = 5e-18
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ A+ T LH A G ++I + L+Q G D ++ DG PL + +
Sbjct: 100 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDL 158
Query: 398 LVEHGA 403
L A
Sbjct: 159 LRGDAA 164
Score = 79.0 bits (196), Expect = 2e-17
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQF-GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
N E L A AG + V+ L + + PLH AA N +++V +L++H
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 402 GACI 405
GA +
Sbjct: 65 GADV 68
Score = 42.4 bits (101), Expect = 8e-05
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
G N+ + L AA ++ V+ L +
Sbjct: 1 GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQS 32
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 84.7 bits (211), Expect = 7e-20
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D +A ++ G+T L+ A GH +IV L++ G DVNA D+ G+ PLH AA +L +
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98
Query: 398 LVEHGACI 405
L++HGA +
Sbjct: 99 LLKHGADV 106
Score = 78.2 bits (194), Expect = 1e-17
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
L A AG D VR L+ G DVNA+D G PL+ A + +L +V L+++GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73
Score = 77.4 bits (192), Expect = 2e-17
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D +A + G T LH A GH +I L++ G DVNAQD G + N +
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131
Query: 398 LVEH 401
L +
Sbjct: 132 LQKL 135
Score = 44.7 bits (107), Expect = 6e-06
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 369 GCDVN-AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
G + SD L AA VR L+ +GA +
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADV 40
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 88.0 bits (219), Expect = 1e-19
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM-PLHCAASCNNLAMVR 396
D S +D+G TAL+ A+ +G+ V+ V+ + GW + A N++++V
Sbjct: 87 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS 146
Query: 397 FLVEHGA 403
+ +
Sbjct: 147 YFLSEIP 153
Score = 87.6 bits (218), Expect = 2e-19
Identities = 16/71 (22%), Positives = 27/71 (38%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
LH A IV+ L+ G D + D G L+ A N+ V+ V+ +
Sbjct: 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121
Query: 406 FATTHSDHETA 416
+ +T+
Sbjct: 122 MFYGKTGWKTS 132
Score = 82.2 bits (204), Expect = 1e-17
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D A+ G +A + AI + +V L+ G N + PLH AA+ + +V+
Sbjct: 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKI 80
Query: 398 LVEHGACI 405
L+ G
Sbjct: 81 LLFSGLDD 88
Score = 81.4 bits (202), Expect = 2e-17
Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMP-LHCAASCNNLAMVRFLV 399
++ +H I GH D++ L+ + N +S ++P + A ++ M++ L
Sbjct: 156 FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF 215
Query: 400 EHGACIFATTH 410
++ I++
Sbjct: 216 KYDINIYSANL 226
Score = 77.2 bits (191), Expect = 6e-16
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGI-TALHNAICAGHFDIVRFLVQFGCDV 372
L A G ++ +K VK G T+ ++A+ IV + +
Sbjct: 99 LYYAVDSGNMQ-TVKL--FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PS 154
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+ +H ++ M+ L+++
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMT 185
Score = 64.1 bits (157), Expect = 1e-11
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
G+ ++ + D D G + A + NN+ +V L+ GA
Sbjct: 1 GMDLSRIN--TWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Score = 63.7 bits (156), Expect = 2e-11
Identities = 5/67 (7%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 338 DPSAANDEGIT-ALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
+ N + AI ++++ L ++ ++ + ++ + +
Sbjct: 186 STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS-------ANLENVLLDDAEIAK 238
Query: 397 FLVEHGA 403
++E
Sbjct: 239 MIIEKHV 245
Score = 52.1 bits (126), Expect = 1e-07
Identities = 2/45 (4%), Positives = 15/45 (33%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNL 392
+A + +I + +++ + + + + + +
Sbjct: 223 SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI 267
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 85.9 bits (214), Expect = 1e-19
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ + + G T L +I G+ ++ FL++ G +VN ++ +G PL A+ +V+
Sbjct: 93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK 152
Query: 398 LVEHGA 403
L+E GA
Sbjct: 153 LLELGA 158
Score = 85.5 bits (213), Expect = 2e-19
Identities = 14/63 (22%), Positives = 24/63 (38%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
+ T L A G + + LV+ + +D +G L A N L + L+
Sbjct: 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS 89
Query: 401 HGA 403
G+
Sbjct: 90 KGS 92
Score = 84.4 bits (210), Expect = 4e-19
Identities = 22/68 (32%), Positives = 30/68 (44%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ EG TAL A+ I L+ G +VN +D G PL + M F
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119
Query: 398 LVEHGACI 405
L+EHGA +
Sbjct: 120 LLEHGANV 127
Score = 78.6 bits (195), Expect = 4e-17
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ + N EG T L A G +IV+ L++ G D++A+D G A +++
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI 185
Query: 398 LVEHGA 403
E
Sbjct: 186 FTEVRR 191
Score = 60.5 bits (148), Expect = 6e-11
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 6/64 (9%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
+ G + FL N +DS PL A + LVE+
Sbjct: 4 MDKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLVEN 57
Query: 402 GACI 405
+
Sbjct: 58 FDKL 61
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 86.8 bits (216), Expect = 1e-19
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 320 ASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
A + E L M+ R VK + N+ T LH A+ +I L+ GCD +
Sbjct: 15 AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGA 403
D G PLH A LA V L +
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCT 102
Score = 83.8 bits (208), Expect = 2e-18
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 12/106 (11%)
Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCD----- 371
A + + E+ L+ DP + G T LH A G V L Q
Sbjct: 52 AVITNQPEIAE---ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108
Query: 372 -VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
+ A + +G LH A+ L +V LV GA + A + TA
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154
Score = 82.2 bits (204), Expect = 5e-18
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 341 AANDEGITALHNAICAGH----FDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
++G + LH AI +++R + +N Q++ PLH A N +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 397 FLVEHGACI 405
L+ G
Sbjct: 63 ALLGAGCDP 71
Score = 82.2 bits (204), Expect = 5e-18
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
G TALH A+ + D+V L++ G DVN G+ P + + + L +
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207
Query: 403 ACIFATT----HSDHETAAVKCEEDEE 425
+ + E E
Sbjct: 208 LENLQMLPESEDEESYDTESEFTEFTE 234
Score = 49.5 bits (119), Expect = 7e-07
Identities = 5/58 (8%), Positives = 11/58 (18%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMV 395
D + +G + I + L Q + +
Sbjct: 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 84.8 bits (211), Expect = 9e-19
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D +A +D G +ALH A + D L++ G + + Q++ PL AA + +
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208
Query: 398 LVEHGA 403
L++H A
Sbjct: 209 LLDHFA 214
Score = 84.4 bits (210), Expect = 1e-18
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
+ G TALH A D + L++ D N QD+ G PLH A S + + + L+
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 401 HGAC 404
+ A
Sbjct: 112 NRAT 115
Score = 83.7 bits (208), Expect = 2e-18
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
D A +G T L A ++ L+ DVNA D G LH AA+ NN+
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 174
Query: 397 FLVEHGA 403
L+++GA
Sbjct: 175 VLLKNGA 181
Score = 82.9 bits (206), Expect = 5e-18
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFG-CDV 372
L A+ + RL++ D + ++ G T LH A+ A + + L++ D+
Sbjct: 61 LHLAARYSRSDAAK---RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+A+ DG PL AA M+ L+ A
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Score = 79.8 bits (198), Expect = 5e-17
Identities = 12/66 (18%), Positives = 23/66 (34%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ N+ T L A G ++ + L+ + + D +P A + +VR
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 241
Query: 398 LVEHGA 403
L
Sbjct: 242 LDLEHH 247
Score = 69.8 bits (172), Expect = 1e-13
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 14/82 (17%)
Query: 338 DPSAANDEGITALHNAICAG-------------HFDIVRFLVQFGCDV-NAQDSDGWMPL 383
D + +G T L A C+G ++ + G + N D G L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 384 HCAASCNNLAMVRFLVEHGACI 405
H AA + + L+E A
Sbjct: 62 HLAARYSRSDAAKRLLEASADA 83
Score = 52.9 bits (128), Expect = 6e-08
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 13/59 (22%)
Query: 371 DVNAQDSDGWMPLHCAASC-------------NNLAMVRFLVEHGACIFATTHSDHETA 416
DVN + DG+ PL A+ + A++ + GA + T ETA
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Score = 35.9 bits (84), Expect = 0.017
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
+ + A H DIVR L +
Sbjct: 215 NRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 84.5 bits (209), Expect = 9e-19
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ + + TALH A AGH +IV FL+Q G VN +D GW PLH AAS +V+
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91
Query: 398 LVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEA 457
L+ GA + A + + + L ++ A++ A
Sbjct: 92 LLVKGAHVNAVNQNGCTPLHYAA---SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 458 NNTDEL 463
++
Sbjct: 149 KGNLKM 154
Score = 77.2 bits (190), Expect = 3e-16
Identities = 12/63 (19%), Positives = 22/63 (34%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
I + A ++ ++ D D LH A S + +V FL++ G
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 403 ACI 405
+
Sbjct: 64 VPV 66
Score = 68.7 bits (168), Expect = 2e-13
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 3/143 (2%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
L A+ G E+V +A N G T LH A +I L++ G + +A+D
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYS 436
+H AA+ NL MV L+ + A + + C +E ++FL +
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC---DEERVEEAKFLVT 193
Query: 437 VQEKLGILNNGAVYALYDYEANN 459
+ I N L +
Sbjct: 194 QGASIYIENKEEKTPLQVAKGGL 216
Score = 67.6 bits (165), Expect = 6e-13
Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 6/151 (3%)
Query: 253 NNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFD 312
E +K + +Q + N EIA + K
Sbjct: 83 AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDAT 141
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
+ A+ +G L++V + + EG T LH A + +FLV G +
Sbjct: 142 AMHR---AAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
++ + PL A L ++ + G
Sbjct: 199 YIENKEEKTPLQVAK--GGLGLILKRLAEGE 227
Score = 36.4 bits (84), Expect = 0.015
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 6/121 (4%)
Query: 253 NNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFD 312
N E + ++ D D + N ++ I +
Sbjct: 116 KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNT 174
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
PL L A E +E N E T L A G ++ + G +
Sbjct: 175 PLHL---ACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEA 229
Query: 373 N 373
+
Sbjct: 230 S 230
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 79.0 bits (195), Expect = 1e-18
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 442 GILNNGAVY-ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN------KEG 494
+ G Y L+D+++ +ELSF+ G+ V RK + +WWW+ L + +G
Sbjct: 5 DQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEE----QWWWATLLDEAGGAVAQG 60
Query: 495 YVPRNLLG 502
YVP N L
Sbjct: 61 YVPHNYLA 68
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 82.8 bits (205), Expect = 1e-18
Identities = 21/148 (14%), Positives = 43/148 (29%), Gaps = 28/148 (18%)
Query: 317 LLDASLEGELELVMKTARL------VKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
+ A++ G E ++ L K+ ++ L N + I FL+ G
Sbjct: 10 VSAAAMLGTYEDFLE---LFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66
Query: 371 DVNAQDSDGWMPLHCAASCNN------LAMVRFLVEHGACIFATTHSDHET----AAVKC 420
D+ ++ +G + + +E GA I A ++
Sbjct: 67 DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY-KPYKIVVFKNIFNY 125
Query: 421 EEDEEGFEGCSEFLYSVQEKLGILNNGA 448
DE + + +G
Sbjct: 126 FVDENEMIPLYKLI--------FSQSGL 145
Score = 81.3 bits (201), Expect = 4e-18
Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 15/101 (14%)
Query: 317 LLDASLEGELELVMKTARLVK-------DPSAANDEGITALHNAICAGHFDIVR------ 363
G + + T L K D +A + I D
Sbjct: 79 FFPLFQGGGND-ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137
Query: 364 -FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
Q G + +D G L C ++ + ++
Sbjct: 138 LIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178
Score = 57.8 bits (140), Expect = 6e-10
Identities = 17/111 (15%), Positives = 30/111 (27%), Gaps = 17/111 (15%)
Query: 345 EGITALHNAICAGHFDIVRFLVQFGCDV---NAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
+ A G ++ L + G + + + + L + FL+
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 402 GACIFATTHSDHET----AAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGA 448
GA I + T + T D G + L GA
Sbjct: 65 GADIKSRT-KEGTTLFFPLFQGGGNDITGTTELCKIF---------LEKGA 105
Score = 53.5 bits (129), Expect = 2e-08
Identities = 7/70 (10%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 317 LLDASLEGELELVMKTARLVK--------DPSAANDEGITALHNAICAGHFDIVRFLVQF 368
+ ++ + L K + G+TAL ++ + +
Sbjct: 118 VFKNIFNYFVDEN-EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176
Query: 369 GCDVNAQDSD 378
N +++
Sbjct: 177 IKKYNLKENS 186
Score = 32.7 bits (75), Expect = 0.14
Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 15/78 (19%)
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD--HETAAVKCEEDEEGFEGC 430
NA + + AA L E G + ++E
Sbjct: 2 NAMS--EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNN--NDEARYKI 57
Query: 431 SEFLYSVQEKLGILNNGA 448
S FL +N GA
Sbjct: 58 SMFL---------INKGA 66
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 78.2 bits (193), Expect = 4e-18
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 444 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
+ + V ALYDY + + D+LSF+ G+ ++VL + EWW S KEGY+P N
Sbjct: 1 MEDIIVVALYDYVSWSPDDLSFQKGDQMVVLEE----SGEWWKARSLATRKEGYIPSN 54
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 81.8 bits (202), Expect = 1e-17
Identities = 15/73 (20%), Positives = 24/73 (32%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
A N +AL + G + L + G PL AA + + R +++
Sbjct: 183 ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242
Query: 401 HGACIFATTHSDH 413
A H H
Sbjct: 243 REFSGAAAHHHHH 255
Score = 81.4 bits (201), Expect = 2e-17
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 297 ALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICA 356
A+ + + G C+ LL + + A + +G +ALH AI
Sbjct: 50 AVLNLQDGVNACIM-----PLLQIDKDSGNPKPLVNA----QCTDEFYQGHSALHIAIEK 100
Query: 357 GHFDIVRFLVQFGCDVNAQDS-------------DGWMPLHCAASCNNLAMVRFLVEHGA 403
V+ LV+ G DV+ + G +PL AA +V +L+E+
Sbjct: 101 RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160
Score = 79.4 bits (196), Expect = 8e-17
Identities = 23/118 (19%), Positives = 33/118 (27%), Gaps = 22/118 (18%)
Query: 317 LLDASLEGELELVMK--------TARLVKDPSAANDEGITALHNAICA---GHFDIVRFL 365
L G E + + L G T L A+ G + L
Sbjct: 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65
Query: 366 VQFGCD-----------VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
+Q D + G LH A +L V+ LVE+GA +
Sbjct: 66 LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123
Score = 70.6 bits (173), Expect = 7e-14
Identities = 17/93 (18%), Positives = 24/93 (25%), Gaps = 19/93 (20%)
Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFG---CDVNAQDSDGWMP----------- 382
K G L A C +D+V +L++ + A DS G
Sbjct: 127 KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS 186
Query: 383 -----LHCAASCNNLAMVRFLVEHGACIFATTH 410
L L M L + H
Sbjct: 187 PENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219
Score = 44.0 bits (104), Expect = 5e-05
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNA 374
L+ +G L++ + V+ +N +G+T L A G +I R ++Q A
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 83.8 bits (208), Expect = 1e-17
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 317 LLDASLEGELELVMKTARLVK-----------DPSAANDEGITALHNAICAGHFDIVRFL 365
L+ + + V LV+ + +G TALH A + IV++L
Sbjct: 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 298
Query: 366 V-QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
V + G + + QD DG P+ AA + +V +L++ GA +
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 339
Score = 82.7 bits (205), Expect = 2e-17
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
L A+ + +V LV + +++G T + A G ++V +L+Q G V
Sbjct: 283 LHYAAQVSNMPIVKY---LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 339
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
A D+ A + N+ +V
Sbjct: 340 EAVDATDHTARQLAQANNHHNIVDIFDRCRP 370
Score = 82.3 bits (204), Expect = 3e-17
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQ---FGC 370
L+ A L LV A L+K DP+ N +ALH A F ++ +++
Sbjct: 170 LMLAVLARRRRLV---AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226
Query: 371 DVNAQDSDGWMPLHCAASCNN---LAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEG 426
D+ D +G L A +A + LVE GA + D++ AA K E +G
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV------DYDGAARKDSEKYKG 279
Score = 81.5 bits (202), Expect = 6e-17
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
D +A + + T L A+ A +V +L++ G D + LH AA+ + M+ +
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVY 217
Query: 398 LVEHGA 403
++
Sbjct: 218 MLNSTK 223
Score = 78.1 bits (193), Expect = 8e-16
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 342 ANDEGITALHNAICAGHFDIVRFL--------VQFGCDVNAQDSDGWMPLHCAASCNNLA 393
T LH + L + G DVNA D D PL A
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180
Query: 394 MVRFLVEHGA 403
+V +L++ GA
Sbjct: 181 LVAYLMKAGA 190
Score = 77.3 bits (191), Expect = 1e-15
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 10/87 (11%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
LL+AS +G ++ + + G+ + F +
Sbjct: 41 LLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPE 91
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
+ + LH A+ + A+ +
Sbjct: 92 PESPIKLHTEAA-GSYAITEPITRESV 117
Score = 72.7 bits (179), Expect = 4e-14
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
G L ++ P+ E LH AG + I + + ++
Sbjct: 65 NPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNII-DP 122
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIF 406
LH AS ++ L+ H A
Sbjct: 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152
Score = 53.4 bits (129), Expect = 8e-08
Identities = 9/76 (11%), Positives = 16/76 (21%), Gaps = 9/76 (11%)
Query: 330 MKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASC 389
M+ + + +L A G+ R N P
Sbjct: 21 MENEEKNRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGN 71
Query: 390 NNLAMVRFLVEHGACI 405
N + F +
Sbjct: 72 GNDFLGDFNHTNLQIP 87
Score = 39.9 bits (94), Expect = 0.001
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
++ A+ EG +E V+ L++ A + TA A H +IV + +
Sbjct: 317 IMLAAQEGRIE-VVMY--LIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 75.8 bits (187), Expect = 2e-17
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 507
V LY + + +EL+F+ GE + V+ K + + EWW K + G VP+N + +
Sbjct: 9 VQTLYPFSSVTEEELNFEKGETMEVIEKPENDP-EWWKCKNARGQVGLVPKNYVVVLSDG 67
Query: 508 QPS 510
Sbjct: 68 PAL 70
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 75.3 bits (186), Expect = 2e-17
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
GA+ A+Y YEA DE+S G+ I V+R D + W + + + +G P +
Sbjct: 1 GAMEAIYAYEAQGDDEISIDPGDIITVIRGDDGS--GWTYGECDGLKGLFPTS 51
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 75.3 bits (186), Expect = 2e-17
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALYD+ A+ + LS GE + VL + EW ++ N +G+VP
Sbjct: 8 FVALYDFVASGDNTLSITKGEKLRVLGY--NHNGEWCEAQTKNGQGWVPSA 56
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 75.4 bits (186), Expect = 2e-17
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLYPRV 507
V YD++A N+ ELS K + + VL ++ R+WW + +EGYVP N+L YP
Sbjct: 11 VLCNYDFQARNSSELSVKQRDVLEVL----DDSRKWWKVRDPAGQEGYVPYNILTPYPAA 66
Query: 508 Q 508
Sbjct: 67 A 67
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 75.0 bits (185), Expect = 3e-17
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
A+ DY A + +LSF GE I++LR+ + WWW + GY+P N + V
Sbjct: 10 FVAIADYAATDETQLSFLRGEKILILRQTTAD---WWWGERAGCCGYIPAN----H--VG 60
Query: 509 PSATP 513
+ P
Sbjct: 61 KHSGP 65
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 79.6 bits (197), Expect = 4e-17
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV- 372
LL A+ E +++ + K L + G TALH A + + L++ ++
Sbjct: 7 LLLAAKENDVQALSKL--LKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 373 ----NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
++ +G LH A N+ +VR L+ GA +
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV 101
Score = 78.0 bits (193), Expect = 1e-16
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD-------------GWMPL 383
+ ++ EG TALH A+ + ++VR L+ G V+A+ + G PL
Sbjct: 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125
Query: 384 HCAASCNNLAMVRFLVEHGA 403
AA + +VR L+EHGA
Sbjct: 126 SFAACVGSEEIVRLLIEHGA 145
Score = 76.9 bits (190), Expect = 4e-16
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 331 KTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN 390
+ P G L A C G +IVR L++ G D+ AQDS G LH
Sbjct: 106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQP 165
Query: 391 N----LAMVRFLVEHGACI 405
N M L+ +
Sbjct: 166 NKTFACQMYNLLLSYDGGD 184
Score = 73.4 bits (181), Expect = 5e-15
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 346 GITALHNAICAGHFDIV-RFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC 404
+ L A + + L GC+V+ + + G LH AA +NL L+E
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 405 I 405
+
Sbjct: 63 L 63
Score = 69.2 bits (170), Expect = 2e-13
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVR----FLVQFGCDVNA------QDSDGWMPLHCAA 387
D A + G T LH I + L+ + + ++ G P A
Sbjct: 146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205
Query: 388 SCNNLAMVRFLVEHGACI 405
N+ M + L++ I
Sbjct: 206 VEGNIVMFQHLMQKRKHI 223
Score = 46.8 bits (112), Expect = 4e-06
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
N++G+T A G+ + + L+Q + A
Sbjct: 189 LELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHH 230
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 74.8 bits (184), Expect = 6e-17
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
Y+ E+SF G + VL K + WW+ + EG+ P + L L Q
Sbjct: 11 YMTCSAYQKVQDSEISFPAGVEVQVLEKQES---GWWYVRFGELEGWAPSHYLVLDENEQ 67
Query: 509 PSATPQ 514
P + +
Sbjct: 68 PDPSGK 73
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 73.5 bits (181), Expect = 1e-16
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V ALYDY+ + E++ K G+ + +L +++ WW ++N+++G+VP
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA 55
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 72.9 bits (180), Expect = 1e-16
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
V AL+D+ N+ ++L FK G+ + + K +E WW K G +P
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ----WWNAEDSEGKRGMIPVP 52
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 73.0 bits (180), Expect = 1e-16
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V LYDY+ + EL+ K G+ + +L +++ WW ++N ++G+VP
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLLNSTNKD---WWKIEVNGRQGFVPAA 56
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 73.5 bits (181), Expect = 1e-16
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
ALYDYEA D+LSF GE +L + + WW S + GY+P N
Sbjct: 18 FVALYDYEAITEDDLSFHKGEKFQILNSSEGD---WWEARSLTTGETGYIPSN 67
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 73.1 bits (180), Expect = 1e-16
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 507
V LYD+ A N +ELS E + VL G +WW + + + GYVP N+LG
Sbjct: 10 VKILYDFTARNANELSVLKDEVLEVLEDGR----QWWKLRSRSGQAGYVPCNILGEAS-- 63
Query: 508 QPSA 511
PS+
Sbjct: 64 GPSS 67
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 73.1 bits (180), Expect = 2e-16
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
+ +Y+ ELS + GE + V+ K + WW+ + ++G+VP L
Sbjct: 11 YVVVSNYKKQENSELSLQAGEVVDVIEKNESG---WWFVSTSEEQGWVPATYLEAQNSGP 67
Query: 509 PSA 511
S
Sbjct: 68 SSG 70
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 72.6 bits (179), Expect = 2e-16
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALYD+EA DEL F++GE + VL + + WW +L+NK G P N
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPS---WWTGRLHNKLGLFPAN 51
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 72.6 bits (179), Expect = 2e-16
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
V ALY ++ +L K G+ + +L K W+ N + G P N Y V+
Sbjct: 5 VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPE---WYKGSCNGRTGIFPAN----Y--VK 55
Query: 509 P 509
P
Sbjct: 56 P 56
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 72.5 bits (179), Expect = 2e-16
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 443 ILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
++ + AL+D+ N+ EL+FK G+ I +L + +++ W + G P +
Sbjct: 1 LIKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLS 54
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 72.3 bits (178), Expect = 3e-16
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
+ Y + + DE+ F+ G + V+RK E WW+ + KEG+ P + L
Sbjct: 11 YVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEG---WWYIRYLGKEGWAPASYLKKAKDSG 67
Query: 509 PSA 511
PS+
Sbjct: 68 PSS 70
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 72.8 bits (179), Expect = 3e-16
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
AL DY ++T L FK + I + K EN +W+ +LN KEG P + + +
Sbjct: 13 ARALKDYNVSDTSLLPFKRNDIITITFKDQEN--KWFMGQLNGKEGSFPVDHVEILLSDV 70
Query: 509 PSATPQ 514
P P
Sbjct: 71 PPPQPV 76
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 72.2 bits (178), Expect = 3e-16
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALY +E DEL F+ G+ I + D N WW + G +P N
Sbjct: 6 FRALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSN 53
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 77.9 bits (192), Expect = 3e-16
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 23/121 (19%)
Query: 297 ALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICA 356
A+ + G+ + ALLLD + + + A + + +G TALH AI
Sbjct: 61 AMLNLHNGQNDTI-----ALLLDVARKTDSLKQFVNA----SYTDSYYKGQTALHIAIER 111
Query: 357 GHFDIVRFLVQFGCDVNAQDSDGWM--------------PLHCAASCNNLAMVRFLVEHG 402
+ +V LV+ G DV A + + PL AA N LA+V+FL+++
Sbjct: 112 RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS 171
Query: 403 A 403
Sbjct: 172 W 172
Score = 74.4 bits (183), Expect = 4e-15
Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 15/122 (12%)
Query: 320 ASLEGELELVMKTARLVKDPSA-ANDEGITALHNAICA---GHFDIVRFLVQFGCDVNAQ 375
LE L + ++ + + D + G T L A+ G D + L+ ++
Sbjct: 27 QELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86
Query: 376 -----------DSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDE 424
G LH A N+ +V LVE+GA + A + D
Sbjct: 87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFY 146
Query: 425 EG 426
G
Sbjct: 147 FG 148
Score = 72.9 bits (179), Expect = 1e-14
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 19/103 (18%)
Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFG---CDVNAQDSDGWMPLHCAASCNNL- 392
G L A C IV+FL+Q D++A+DS G LH +
Sbjct: 139 TKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNT 198
Query: 393 --------AMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGF 427
+M ++ GA + H T ++ + +G
Sbjct: 199 VDNTKFVTSMYNEILILGAKL-------HPTLKLEEITNRKGL 234
Score = 65.2 bits (159), Expect = 7e-12
Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 22/110 (20%)
Query: 313 PLALLLDASLEGELELV---MKTARLVKDPSAANDEGITALHNAICAGHFDIVR------ 363
PL+L A+ +L +V ++ + D SA + G T LH + +
Sbjct: 151 PLSL---AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207
Query: 364 ----------FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
L + G PL AAS + ++ ++++
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257
Score = 55.9 bits (135), Expect = 7e-09
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 11/79 (13%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQF-------GCDVNAQDSD-GWMPLHCA--- 386
++ +A+ + + L+ F D +D + G L A
Sbjct: 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64
Query: 387 ASCNNLAMVRFLVEHGACI 405
+ L++
Sbjct: 65 LHNGQNDTIALLLDVARKT 83
Score = 52.1 bits (125), Expect = 1e-07
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 315 ALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNA 374
+ + L L K +K N +G+T L A +G ++ +++Q
Sbjct: 202 TKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ------- 254
Query: 375 QDSDGWMPLHCAASCNN 391
++ H AA ++
Sbjct: 255 REIHEPECRHAAAHHHH 271
Score = 32.4 bits (74), Expect = 0.30
Identities = 4/55 (7%), Positives = 10/55 (18%), Gaps = 7/55 (12%)
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE-------HGACIFATTHSDHETA 416
+ A + +N + L+ +T
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTC 57
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 72.3 bits (178), Expect = 3e-16
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
A +DY ELSFK G +++ ++ ++ WW + N +G +P + +
Sbjct: 12 AIAKFDYVGRTARELSFKKGASLLLYQRASDD---WWEGRHNGIDGLIPHQYIVVQDTSG 68
Query: 509 PSA 511
PS+
Sbjct: 69 PSS 71
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 71.8 bits (177), Expect = 4e-16
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
L+ + +EL G + VL+KG++N W N ++G VP N
Sbjct: 12 VLFGFVPETKEELQVMPGNIVFVLKKGNDN---WATVMFNGQKGLVPCN 57
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 71.9 bits (177), Expect = 4e-16
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 507
+ LY++EA N EL+ GE + VL WW K + GY+P N +
Sbjct: 10 MQVLYEFEARNPRELTVVQGEKLEVLDHSK----RWWLVKNEAGRSGYIPSN----I--L 59
Query: 508 QPSATPQ 514
+P + P
Sbjct: 60 EPLSGPS 66
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 71.4 bits (176), Expect = 4e-16
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
V AL+D+ + EL+FK G+ I ++ K D N WW +LNN+ G P N Y V
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSN----Y--VC 55
Query: 509 P 509
P
Sbjct: 56 P 56
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 72.0 bits (177), Expect = 5e-16
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
ALYDYEA D+LSF GE +L + + WW S + GY+P
Sbjct: 8 FEALYDYEARTEDDLSFHKGEKFQILNSSEGD---WWEARSLTTGETGYIPSI 57
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 72.0 bits (177), Expect = 6e-16
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
V ALYDY+ + E++ K G+ + +L +++ WW ++N+++G+VP +
Sbjct: 20 VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAAYVKKLAAAW 76
Query: 509 PS 510
Sbjct: 77 SH 78
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 72.0 bits (177), Expect = 6e-16
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LLGLY 504
A++D+ EL+FK G+ I VL +++ WWW +++++EG+ P + +
Sbjct: 13 AEAVWDHVTMANRELAFKAGDVIKVLDASNKD---WWWGQIDDEEGWFPASFVRLWVNQE 69
Query: 505 PRVQPSATPQ 514
V+ + P
Sbjct: 70 DEVEEGSGPS 79
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 71.5 bits (176), Expect = 6e-16
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
V AL+D+ N+ ++L FK G+ + + K +E WW K G +P
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ----WWNAEDSEGKRGMIPVP 54
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 71.1 bits (175), Expect = 6e-16
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
A +DY + ELSFK G +++ + E+ WW + N +G VP
Sbjct: 9 AIAKFDYVGRSARELSFKKGASLLLYHRASED---WWEGRHNGIDGLVPHQ 56
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 71.7 bits (176), Expect = 6e-16
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
V ALYDY+ + E++ K G+ + +L +++ WW ++N+++G+VP + Q
Sbjct: 5 VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAAYVKKLDPAQ 61
Query: 509 PSATPQ 514
++
Sbjct: 62 SASREN 67
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 71.6 bits (176), Expect = 7e-16
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
ALYDY A +LSF GE +L G + WW S + GY+P N
Sbjct: 9 FVALYDYNATRWTDLSFHKGEKFQILEFGPGD---WWEARSLTTGETGYIPSN 58
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 71.5 bits (176), Expect = 7e-16
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
ALYD + +DEL+F G+ + +L + WW L+ ++G P N R+Q
Sbjct: 10 ARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPAN------RLQ 63
Query: 509 PSATP 513
+ P
Sbjct: 64 ILSGP 68
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 71.2 bits (175), Expect = 8e-16
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V ALYDYE DELSF G I +L K ++++ +W + N + G P
Sbjct: 11 VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSV 61
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 76.4 bits (188), Expect = 8e-16
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 25/122 (20%)
Query: 297 ALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDP-SAANDEGITALHNAIC 355
AL + G+ + +LLD + + + P G TALH AI
Sbjct: 53 ALLNLSAGRNDTI-----PILLDIAEKTG-----NMREFINSPFRDVYYRGQTALHIAIE 102
Query: 356 AGHFDIVRFLVQFGCDVNAQDS--------------DGWMPLHCAASCNNLAMVRFLVEH 401
V LV+ G DV+AQ G +PL AA N +V +L E+
Sbjct: 103 RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162
Query: 402 GA 403
G
Sbjct: 163 GH 164
Score = 68.7 bits (168), Expect = 3e-13
Identities = 26/133 (19%), Positives = 35/133 (26%), Gaps = 22/133 (16%)
Query: 316 LLLDASLEGELE--------LVMKTARLVKDPSAANDEGITALHNA---ICAGHFDIVRF 364
+L D G + L+ RL + G T L A + AG D +
Sbjct: 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67
Query: 365 LVQFGCD-----------VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
L+ G LH A V LVE GA + A
Sbjct: 68 LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127
Query: 414 ETAAVKCEEDEEG 426
+ G
Sbjct: 128 FQPKDEGGYFYFG 140
Score = 66.3 bits (162), Expect = 2e-12
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 22/120 (18%)
Query: 313 PLALLLDASLEGELELV---MKTARLVKDPSAANDEGITALHNAICAGH---------FD 360
PL+L A+ + +V + D + G T LH +
Sbjct: 143 PLSL---AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199
Query: 361 IVRFLVQFGCDVNA-------QDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
+ L+ + ++DG PL AA + + + ++ A H H
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 71.1 bits (175), Expect = 8e-16
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALY Y + +L+F GE I+V +K + EWW + ++ G P N
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQK----DGEWWTGSIGDRSGIFPSN 57
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 71.2 bits (175), Expect = 8e-16
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLLGLYPR 506
+Y Y+A+ DEL+ + E + V+ GD E W + GYVP L
Sbjct: 16 CKVVYSYKASQPDELTIEEHEVLEVIEDGDM---EDWVKARNKVGQVGYVPEKYLQFPTS 72
Query: 507 VQPSA 511
PS+
Sbjct: 73 SGPSS 77
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 70.8 bits (174), Expect = 8e-16
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
V ALY Y+ + D+LSFK GE + VL E EWW S L KEG++P N
Sbjct: 10 VVALYPYDGIHPDDLSFKKGEKMKVL----EEHGEWWKAKSLLTKKEGFIPSN 58
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 71.1 bits (175), Expect = 9e-16
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
ALY +E DEL F+ G+ I + D N WW + G +P N Y V
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSN----Y--VA 60
Query: 509 PSATP 513
+ P
Sbjct: 61 EQSGP 65
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 70.9 bits (174), Expect = 1e-15
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 18/75 (24%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---------NNKEGYVPRN 499
AL+DY+A ++LSF+ G+ + VL E WW ++ +GY+P N
Sbjct: 10 FVALFDYQARTAEDLSFRAGDKLQVLDTSHEG---WWLARHLEKKGTGLGQQLQGYIPSN 66
Query: 500 LLGLYPRVQPSATPQ 514
Y V + P
Sbjct: 67 ----Y--VAEDSGPS 75
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 69.9 bits (172), Expect = 1e-15
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V ALYDY+A DEL+FK G+ IIV +K WW +LN K G+VP N
Sbjct: 6 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAG---WWEGELNGKRGWVPAN 53
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 69.9 bits (172), Expect = 1e-15
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
YD+ A + DEL+ K+G+ + +L D+ ++WW +L + K G VP
Sbjct: 7 VQYDFMAESQDELTIKSGDKVYILD--DKKSKDWWMCQLVDSGKSGLVPAQ 55
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 70.3 bits (173), Expect = 1e-15
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
V A+YD++A +L + G+ I+L K D + WW ++ EGY+P N
Sbjct: 5 VVAMYDFQATEAHDLRLERGQEYIILEKNDLH---WWRARDKYGSEGYIPSN 53
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 69.9 bits (172), Expect = 1e-15
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALY + + +L F+ G+ I +L+K D +WW ++N +EG P N
Sbjct: 6 AVALYSFAGEESGDLPFRKGDVITILKKSDSQN-DWWTGRVNGREGIFPAN 55
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 71.0 bits (174), Expect = 1e-15
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 507
V LY + + +EL+F+ GE + V+ K + + EWW K + G VP+N + +
Sbjct: 20 VQTLYPFSSVTEEELNFEKGETMEVIEKPENDP-EWWKCKNARGQVGLVPKNYVVVLSDG 78
Query: 508 QPSATPQ 514
Sbjct: 79 PALHPAH 85
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 70.5 bits (173), Expect = 1e-15
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 510
L Y A E++ K G+ + +L +++ WW ++N+++G+VP Y + S
Sbjct: 5 PLPPYSAGG-REVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA----YVKKLDS 56
Query: 511 ATPQ 514
T +
Sbjct: 57 GTGK 60
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 69.9 bits (172), Expect = 1e-15
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V ALYD+EA +EL+FK GE I VL D N WW + + G P N
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDAN---WWQGENHRGTGLFPSN 55
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 70.4 bits (173), Expect = 2e-15
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 507
V A +DY A EL K E + +L ++ + WW + NK G+VP N +
Sbjct: 10 VVAKFDYVAQQEQELDIKKNERLWLL----DDSKSWWRVRNSMNKTGFVPSNYVERKNSA 65
Query: 508 QPSA 511
+ +A
Sbjct: 66 RAAA 69
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 69.9 bits (172), Expect = 2e-15
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
+DY+A + DEL+ GE I +RK D WW ++N + G P N
Sbjct: 4 AIVEFDYQAQHDDELTISVGEIITNIRKEDGG---WWEGQINGRRGLFPDN 51
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 70.1 bits (172), Expect = 2e-15
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--------NNKEGYVPRN 499
V ALYDY+ + E++ K G+ + +L +++ WW ++ ++G+VP
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVKITVNGKTYERQGFVPAA 59
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 70.0 bits (172), Expect = 2e-15
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
L+ Y N DEL+F+ GE I ++ K + E WW +LN KEG P N
Sbjct: 9 CRTLFPYTGTNEDELTFREGEIIHLISK-ETGEAGWWKGELNGKEGVFPDN 58
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 69.5 bits (171), Expect = 2e-15
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V AL+D++ EL F+ G+ I V+ D N WW + + G PRN
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 52
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 70.1 bits (172), Expect = 2e-15
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
A + Y ELSF+ G+ + + + + WW + N G +P
Sbjct: 13 AVACFAYTGRTAQELSFRRGDVLRLHERASSD---WWRGEHNGMRGLIPHK 60
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 70.0 bits (172), Expect = 2e-15
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALY + ++L + G+ I +L +E+ WW K+ ++ G+ P N
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNED---WWKGKIQDRIGFFPAN 57
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 70.0 bits (172), Expect = 2e-15
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRN 499
A Y++ +L F G+ + ++ + W+ +K +EG +P N
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDP--NWYKAKNKVGREGIIPAN 63
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 69.5 bits (171), Expect = 2e-15
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLLGLYPR 506
AL+ Y A+ +EL + GE I VL K + W S L + G P + Y
Sbjct: 10 FVALHTYSAHRPEELDLQKGEGIRVLGKYQDG---WLKGLSLLTGRTGIFPSD----Y-- 60
Query: 507 VQPSATPQ 514
V P + P
Sbjct: 61 VIPVSGPS 68
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 69.6 bits (171), Expect = 3e-15
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
V A +DY A EL K E + +L ++ + WW + N+ GYVP N
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLL----DDSKTWWRVRNAANRTGYVPSN 54
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 69.5 bits (171), Expect = 3e-15
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
V AL+ YEA ++L F+ G+ I+VL K +E W + K G P+ + V+
Sbjct: 8 VEALFSYEATQPEDLEFQEGDIILVLSKVNEE---WLEGESKGKVGIFPKV----F--VE 58
Query: 509 PSAT 512
SAT
Sbjct: 59 DSAT 62
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 69.6 bits (171), Expect = 3e-15
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALYDY A N DEL G+ + V+ +G++ WW + N + G+VP +
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGEDG---WWTVERNGQRGFVPGS 58
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 69.8 bits (171), Expect = 3e-15
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
V AL Y +N LSF G+ I +L E W + + G P + VQ
Sbjct: 11 VIALRSYITDNCSLLSFHRGDLIKLLPV-ATLEPGWQFGSAGGRSGLFPAD----I--VQ 63
Query: 509 PSATP 513
P+A P
Sbjct: 64 PAAAP 68
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 69.2 bits (170), Expect = 3e-15
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
V ALYDY+ DELSFK G+ + L + DE W G + LGLYP
Sbjct: 6 VRALYDYDGQEQDELSFKAGDELTKLGEEDEQ---GWC------RGRLDSGQLGLYP 53
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 68.8 bits (169), Expect = 4e-15
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 507
+ YD+ A N+ ELS + + +L ++ R+WW + + G+VP N+L +
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLEIL----DDRRQWWKVRNASGDSGFVPNNILDIMRTP 59
Query: 508 Q 508
+
Sbjct: 60 E 60
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 68.8 bits (169), Expect = 5e-15
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
L++Y N DEL K G+ I + + +E WW LNNK G P N
Sbjct: 4 CKVLFEYIPQNEDELELKVGDIIDINEEVEEG---WWSGTLNNKLGLFPSN 51
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 68.8 bits (169), Expect = 5e-15
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN---LLGLYP 505
ALYD+E N EL FK G+ I + + DEN W+ L+ G+ P N +L P
Sbjct: 10 CRALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMLHGHSGFFPINYVEILVALP 66
Query: 506 RVQPSA 511
PS+
Sbjct: 67 HSGPSS 72
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 68.5 bits (168), Expect = 6e-15
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
A+ D+ A +L+FK GE ++V+ K + WW +K EG VPR
Sbjct: 13 YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDG---WWIAKDAKGNEGLVPRT 61
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 68.4 bits (168), Expect = 6e-15
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALY Y+A +TDELSF + I ++++ WW +L K+G P N
Sbjct: 8 CKALYAYDAQDTDELSFNANDIIDIIKEDPSG---WWTGRLRGKQGLFPNN 55
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 68.4 bits (168), Expect = 7e-15
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRN 499
V ALYDY N ++L + G+ +L + + WW ++ N +EGY+P N
Sbjct: 11 VVALYDYMPMNANDLQLRKGDEYFILEESNLP---WWRARDKNGQEGYIPSN 59
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 68.4 bits (168), Expect = 7e-15
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS-KLNNKEGYVPRN 499
YDY+A + DEL+ + GE I ++K E E W +LN + G P N
Sbjct: 4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQE---EGWLEGELNGRRGMFPDN 52
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 68.4 bits (168), Expect = 7e-15
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
LYD+E N EL FK G+ I + + DEN W+ ++ + G+ P N
Sbjct: 6 CRGLYDFEPENQGELGFKEGDIITLTNQIDEN---WYEGMIHGESGFFPIN 53
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 68.0 bits (167), Expect = 7e-15
Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
+D++A + EL+ + G+ + + ++ D+N W + + + G P N
Sbjct: 6 LKFDFQAQSPKELTLQKGDIVYIHKEVDKN---WLEGEHHGRLGIFPAN 51
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 68.4 bits (168), Expect = 8e-15
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
A +D++A EL + G+ + + ++ D+N W+ + + + G PR
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQN---WYEGEHHGRVGIFPRT 57
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 69.1 bits (169), Expect = 8e-15
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS-KLNNK-EGYVPRNLLGLYPR 506
A YD+ A + +E+SF+ G+ + + K + + W L+ + G +P N + + +
Sbjct: 20 ARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGK 79
Query: 507 VQPSATPQ 514
+ T +
Sbjct: 80 RRGRKTIE 87
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 67.6 bits (166), Expect = 1e-14
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V A ++++ N DELSF G+ I V R + WW N + G+ P N
Sbjct: 7 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGG---WWEGTHNGRTGWFPSN 54
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 67.7 bits (166), Expect = 1e-14
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
V AL+ YE ++ +L F+ GE + +L E EWW S +EG++P N
Sbjct: 9 VIALHSYEPSHDGDLGFEKGEQLRIL----EQSGEWWKAQSLTTGQEGFIPFN 57
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 67.7 bits (166), Expect = 1e-14
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
YD+ A + DEL+ K+G+ + +L D+ ++WW +L + K G VP
Sbjct: 9 GIVQYDFMAESQDELTIKSGDKVYILD--DKKSKDWWMCQLVDSGKSGLVPAQ 59
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 67.7 bits (166), Expect = 1e-14
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDN 54
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 67.7 bits (166), Expect = 1e-14
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V A+YD+EA +EL+FK GE I VL D N WW + + G P N
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDPN---WWKGETHQGIGLFPSN 67
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 68.6 bits (168), Expect = 1e-14
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V A+YDY ANN DELSF G+ I V+ K D + WW ++N G P N
Sbjct: 37 VIAMYDYAANNEDELSFSKGQLINVMNKDDPD---WWQGEINGVTGLFPSN 84
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 67.3 bits (165), Expect = 2e-14
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
A+Y +E ++ +S GE + ++ + + W + EGYVP +
Sbjct: 12 AIYHFEGSSEGTISMAEGEDLSLMEEDKG---DGWTRVRRKEGGEGYVPTS 59
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 67.8 bits (166), Expect = 2e-14
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
V ALYD+EA +EL+FK GE IIVL D N WW + + G P N + ++
Sbjct: 20 VRALYDFEAVEDNELTFKHGEIIIVLDDSDAN---WWKGENHRGIGLFPSNFVTTNLNIE 76
Query: 509 PSATPQ 514
A
Sbjct: 77 TEAAAV 82
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 67.8 bits (166), Expect = 2e-14
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V A+YDY + DELSF+ G I V++K D+ W+ +N G P N
Sbjct: 20 VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDG---WYEGVMNGVTGLFPGN 67
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 66.8 bits (164), Expect = 2e-14
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
LY Y + DE++ G+ I ++ + W + + G VP
Sbjct: 6 VLYAYVQKDDDEITITPGDKISLVARDTG---SGWTKINNDTTGETGLVPTT 54
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 67.8 bits (166), Expect = 2e-14
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
V ALYDY+ N+ EL+ + E +L + + WW + N EGYVP +
Sbjct: 22 VIALYDYQTNDPQELALRRNEEYCLLDSSEIH---WWRVQDRNGHEGYVPSS 70
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 66.9 bits (164), Expect = 2e-14
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
L++Y N DEL K G+ I + + +E WW LNNK G P N
Sbjct: 10 CKVLFEYIPQNEDELELKVGDIIDINEEVEEG---WWSGTLNNKLGLFPSN 57
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 67.3 bits (165), Expect = 2e-14
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
AL D+E ++ DEL F+ + I ++ + DE+ W +LN G+ P
Sbjct: 12 ALLDFERHDDDELGFRKNDIITIISQKDEH---CWVGELNGLRGWFPAK 57
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 67.4 bits (165), Expect = 2e-14
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
V ALYDY+ N+ EL+ + E +L + + WW + N EGY P +
Sbjct: 23 VIALYDYQTNDPQELALRCDEEYYLLDSSEIH---WWRVQDKNGHEGYAPSS 71
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 66.9 bits (164), Expect = 2e-14
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V A ++++ N DELSF G+ I V R + WW N + G+ P N
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGG---WWEGTHNGRTGWFPSN 56
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 66.9 bits (164), Expect = 2e-14
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALYDY+A DE+SF + I + D+ WW + G P N
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPAN 59
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 67.4 bits (165), Expect = 2e-14
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
V ALY +E +L+F+ G+ I V+ K D +WW KL + G P N Y V
Sbjct: 20 VTALYSFEGQQPGDLNFQAGDRITVISKTDS-HFDWWEGKLRGQTGIFPAN----Y--VT 72
Query: 509 PSATP 513
++ P
Sbjct: 73 MNSGP 77
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 66.5 bits (163), Expect = 3e-14
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS---KLNNKEGYVPRN 499
A YDY+A +EL+F + II + D++ WW + + +G P N
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDD----WWLGELEKDGSKGLFPSN 52
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 67.5 bits (165), Expect = 3e-14
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
V ALYDYEA + ++LSF+ G+ ++VL + EWW S KEGY+P N
Sbjct: 28 VVALYDYEAIHHEDLSFQKGDQMVVLEESG----EWWKARSLATRKEGYIPSN 76
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 66.9 bits (164), Expect = 3e-14
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
A YD++A DELSFK G+ + VL + E ++ W+ ++LN K+G++P+N
Sbjct: 12 AIAKYDFKATADDELSFKRGDILKVLNE--ECDQNWYKAELNGKDGFIPKN 60
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 66.5 bits (163), Expect = 3e-14
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
+ Y N DEL K G+ I V+ + +E WW LN K G P N
Sbjct: 10 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEG---WWEGVLNGKTGMFPSN 57
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 66.6 bits (163), Expect = 3e-14
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRNLLGLYPRV 507
V ALYDY AN +DEL+ G+ I V K +E+ WW+ + +EGY P N + V
Sbjct: 9 VVALYDYTANRSDELTIHRGDIIRVFFKDNED---WWYGSIGKGQEGYFPAN----H--V 59
Query: 508 QPSATPQ 514
Q
Sbjct: 60 ASETLYQ 66
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 66.7 bits (163), Expect = 3e-14
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
+ L DY + + F+ GE + V+ +E WW S +E Y+P
Sbjct: 20 LAVLSDYPSPDISPPIFRRGEKLRVI----SDEGGWWKAISLSTGRESYIPGI 68
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 66.6 bits (163), Expect = 4e-14
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
AL+D+ N+ EL+FK G+ I +L + +++ W + G P +
Sbjct: 21 AEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLS 68
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 66.2 bits (162), Expect = 4e-14
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 449 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
V A+ Y +TDE+SF G+ IV + ++ W W + +++G + +
Sbjct: 10 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDG---WMWVTNLRTDEQGLIVED 60
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 66.2 bits (162), Expect = 5e-14
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N
Sbjct: 12 CKVIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDN 61
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 66.3 bits (162), Expect = 5e-14
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
LYDY+A N+ ELS E I V + +W + N++G VP
Sbjct: 22 VLYDYDAANSTELSLLADEVITVFSVVGMDS-DWLMGERGNQKGKVPIT 69
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 65.7 bits (161), Expect = 6e-14
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRN 499
G A +++ + E+SF+ GE I +LR+ DEN W+ ++ +++G P
Sbjct: 7 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDEN---WYEGRIPGTSRQGIFPIT 58
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 67.1 bits (164), Expect = 6e-14
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
ALYDYEA T++LSFK GE ++ + + WW S K GY+P N
Sbjct: 30 FVALYDYEARTTEDLSFKKGERFQIINNTEGD---WWEARSIATGKSGYIPSN 79
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 65.7 bits (161), Expect = 6e-14
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALYD+E N EL F+ G+ I + + DEN W+ L+ + G+ P +
Sbjct: 16 CKALYDFEPENDGELGFREGDLITLTNQIDEN---WYEGMLHGQSGFFPLS 63
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 65.7 bits (161), Expect = 7e-14
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
AL +Y N +L F G+ I++ R+ DEN W+ ++N G P +
Sbjct: 12 ALCNYRGKNPGDLKFNKGDVILLRRQLDEN---WYQGEINGVSGIFPAS 57
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 65.8 bits (161), Expect = 7e-14
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALYDY+A DE+SF + I + D+ WW + G P N
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPAN 67
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 65.4 bits (160), Expect = 7e-14
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
A+Y Y N DEL + G+ + V+++ D+ W+ S+ K G P N
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDDG---WFVGVSRRTQKFGTFPGN 59
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 65.4 bits (160), Expect = 9e-14
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N
Sbjct: 10 CKVIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDN 59
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 65.4 bits (160), Expect = 9e-14
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
A Y++ A + ELS + G+ + + + ++ WW + N + G+ P
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSR-IGGDQGWWKGETNGRIGWFPST 59
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 64.5 bits (158), Expect = 1e-13
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
ALYD+E N +EL G+ + + K + W ++ +K G VP
Sbjct: 6 ALYDFEPENDNELRLAEGDIVFISYKHGQG----WLVAENESGSKTGLVPEE 53
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 65.6 bits (160), Expect = 1e-13
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
V A +DY A EL K E + +L ++ + WW + N+ GYVP N
Sbjct: 34 VIAKWDYTAQQDQELDIKKNERLWLL----DDSKTWWRVRNAANRTGYVPSN 81
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 65.0 bits (159), Expect = 1e-13
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRN 499
A +++ + E+SF+ GE I +LR+ DEN W+ ++ +++G P
Sbjct: 12 AKFNFNGDTQVEMSFRKGERITLLRQVDEN---WYEGRIPGTSRQGIFPIT 59
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 64.6 bits (158), Expect = 2e-13
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V A ++++ N DELS G+ I V R + WW LN + G+ P N
Sbjct: 13 VKARFNFKQTNEDELSVCKGDIIYVTRVEEGG---WWEGTLNGRTGWFPSN 60
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 64.7 bits (158), Expect = 2e-13
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN---NKEGYVPRNLLGLYP 505
V +YD +A+N DEL+F GE IIV + D+ WW + ++G P + + +
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQE---WWIGHIEGQPERKGVFPVSFVHILS 69
Query: 506 RVQPSA 511
PS+
Sbjct: 70 DSGPSS 75
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 64.7 bits (158), Expect = 2e-13
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALY ++A DEL+ + G+ +I+ K +E WW+ LN K+G+ P
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEG---WWFGSLNGKKGHFPAA 57
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 64.3 bits (157), Expect = 2e-13
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-----KEGYVPRN 499
V A + Y+++ D+L+F+ + IIV D EW++ + + EG P++
Sbjct: 10 VVAQFPYKSDYEDDLNFEKDQEIIVTSVEDA---EWYFGEYQDSNGDVIEGIFPKS 62
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 64.2 bits (157), Expect = 2e-13
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
ALYD+E N +EL G+ + + K + W ++ +K G VP
Sbjct: 10 ALYDFEPENDNELRLAEGDIVFISYKHGQG----WLVAENESGSKTGLVPEE 57
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 63.8 bits (156), Expect = 2e-13
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRN 499
V AL+DY+A DEL+F I + K D WW K+ + P N
Sbjct: 6 VKALFDYKAQREDELTFTKSAIIQNVEKQDGG---WWRGDYGGKKQLWFPSN 54
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 64.3 bits (157), Expect = 2e-13
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
AL + A + L+F + I VL + EN WW+ +++ G+ P++
Sbjct: 13 AQALCSWTAKKDNHLNFSKHDIITVLEQ-QEN---WWFGEVHGGRGWFPKS 59
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 63.9 bits (156), Expect = 3e-13
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 449 VYALYDYEANNTD-ELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRN 499
ALYD+ N + E++ K G+ + +L K D + +WW + N GY+P N
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 64
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 68.2 bits (166), Expect = 3e-13
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
A YD++A DELSFK G+ + VL + E ++ W+ ++LN K+G++P+N
Sbjct: 5 AKYDFKATADDELSFKRGDILKVLNE--ECDQNWYKAELNGKDGFIPKN 51
Score = 62.8 bits (152), Expect = 2e-11
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V AL+D++ EL F+ G+ I V+ D N WW + + G PRN
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 208
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 64.4 bits (157), Expect = 4e-13
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
+ Y N DEL K G+ I V+ + +E WW LN K G P N
Sbjct: 23 VAFSYLPQNDDELELKVGDIIEVVGEVEEG---WWEGVLNGKTGMFPSN 68
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 63.1 bits (154), Expect = 5e-13
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK-EGYVPRN 499
V ALYDY+A +DEL+F G I + K WW + + Y P N
Sbjct: 10 VKALYDYKAKRSDELTFCRGALIHNVSKEPGG---WWKGDYGTRIQQYFPSN 58
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 63.6 bits (155), Expect = 6e-13
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
Y ++Y A DELS G +IV+ K + WW N + G+ P N
Sbjct: 20 AYVKFNYMAEREDELSLIKGTKVIVMEKCSDG---WWRGSYNGQVGWFPSN 67
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 63.2 bits (154), Expect = 6e-13
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
++ EL+F+ G+ + +L + + W+ + +EG +
Sbjct: 20 CITKCEHTRPKPGELAFRKGDVVTILEACEN---KSWYRVKHHTSGQEGLLAAG 70
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 63.0 bits (154), Expect = 6e-13
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALY +A + ELSF G + E W LN K G +P N
Sbjct: 13 AKALYACKAEHDSELSFTAGTVFDNVHPSQEP--GWLEGTLNGKTGLIPEN 61
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 63.7 bits (155), Expect = 7e-13
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALY +EA N DE+SF +G+ I V K E W + G+ P N
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEK-TVGEPGWLYGSFQGNFGWFPCN 57
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 63.2 bits (154), Expect = 8e-13
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW--WSKLNNKEGYVPRN 499
A Y ++ + ELSF+ GE I ++RK +EN W+ ++G P +
Sbjct: 20 AVAQYTFKGDLEVELSFRKGEHICLIRKVNEN---WYEGRITGTGRQGIFPAS 69
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 66.2 bits (161), Expect = 8e-13
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
A+ DYE + E++ TG+ + V+ K + WW+ ++ K G++P + L
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESG---WWFCQMKAKRGWIPASFLEPLDSPD 70
Query: 509 PSATPQ 514
+ P+
Sbjct: 71 ETEDPE 76
Score = 65.4 bits (159), Expect = 1e-12
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
A+ Y A DE+S GE + V+ K + WW + ++ GY P L +
Sbjct: 84 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFPSMYLQKSGQDV 140
Query: 509 PSATPQ 514
A Q
Sbjct: 141 SQAQRQ 146
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 62.8 bits (153), Expect = 9e-13
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 449 VYALYDYEANNTD-ELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRN 499
ALYD+ N + E++ K G+ + +L K D + +WW + N GY+P N
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 62.1 bits (151), Expect = 1e-12
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 449 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 501
V A+ Y +TDE+SF G+ IV + ++ W W + +++G + +L+
Sbjct: 8 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDG---WMWVTNLRTDEQGLIVEDLV 60
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 61.9 bits (151), Expect = 1e-12
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
A+YDY A + DE+SF+ G+ I+ ++ D+ W + + G +P N
Sbjct: 11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDG----WMYGTVQRTGRTGMLPAN 58
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 68.0 bits (166), Expect = 1e-12
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 11/106 (10%)
Query: 317 LLDASLEGELELVMKTARLVK---DPSAAN--DEGITALHNAICAGHFDIVRFLVQFGCD 371
A+ G L ++ RL + A E A A GH ++ L +
Sbjct: 132 FRLAAENGHLHVL---NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 188
Query: 372 VNAQD--SDGWMPLHCAASCNN-LAMVRFLVEHGACIFATTHSDHE 414
++ + AA ++ FL++ + + E
Sbjct: 189 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE 234
Score = 65.4 bits (159), Expect = 1e-11
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
L L +L + A C+ D + L+ V
Sbjct: 67 LCLYYAHYNRNAKQLWSDAHKKGIKSEVIC---FVAAITG-CSSALDTLCLLLTSDEIVK 122
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT-HSDHETA 416
++ + AA +L ++ L E +++ A
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA 166
Score = 65.4 bits (159), Expect = 1e-11
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 17/108 (15%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGH---FDIVRFL-----VQFGCD 371
++ +G +LV K + +G L N I D +RFL ++
Sbjct: 261 SNPDGVFDLVTK---------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 311
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVK 419
D L A N L+ + + T +++
Sbjct: 312 TATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETG 359
Score = 58.8 bits (142), Expect = 1e-09
Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 313 PLALLLDASLEGELELV-----MKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQ 367
L L+ + E L+ + + + + + + L A+ G+ L+
Sbjct: 281 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 340
Query: 368 FGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
+ ++ + + + L + +EH
Sbjct: 341 IPSVLALTKANNY---YINETGGRLDLRAVALEHHH 373
Score = 43.8 bits (103), Expect = 9e-05
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 11/106 (10%)
Query: 317 LLDASLEGELELV--MKTARLVKDPSAANDEGITALHNAICA-GHFDIVRFLVQFGCDVN 373
A+ G L ++ + + + E A A GH +++ FL+ +
Sbjct: 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVK 419
+ + F+ H H + +
Sbjct: 227 YAE-------IHEFEYGEKYVNPFIARHVN-RLKEMHDAFKLSNPD 264
Score = 36.1 bits (83), Expect = 0.026
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 16/86 (18%)
Query: 318 LDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDS 377
+ GE + + E A + G FD+V ++
Sbjct: 230 IHEFEYGEKYVN----PFIARHVNRLKEMHDAFKLSNPDGVFDLVT---------KSECL 276
Query: 378 DGWMPLHCAASCNN---LAMVRFLVE 400
G+ L N+ L +RFL+
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLS 302
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 61.9 bits (151), Expect = 1e-12
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRN 499
V AL+DY+A DEL+F I + K + WW K+ + P N
Sbjct: 9 VKALFDYKAQREDELTFIKSAIIQNVEKQEGG---WWRGDYGGKKQLWFPSN 57
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 62.9 bits (153), Expect = 2e-12
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 447 GAVYA--LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRN 499
G++YA LYD++A DEL+ GE + + + EW+ +K G VP
Sbjct: 4 GSLYAIVLYDFKAEKADELTTYVGENLFICAHHNC---EWFIAKPIGRLGGPGLVPVG 58
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 67.4 bits (164), Expect = 2e-12
Identities = 30/250 (12%), Positives = 78/250 (31%), Gaps = 11/250 (4%)
Query: 233 KDTSCPPPLPTTE-PPSDDNINNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEI 291
+ P+ T + D +++ ++ +K + + QE+
Sbjct: 19 DNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEM 78
Query: 292 AEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAAND-EGITAL 350
+ S + + + + D+ L+ + T + + D G T L
Sbjct: 79 PTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ---LNLNIPVDEHGNTPL 135
Query: 351 HNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR---FLVEHGACIFA 407
H + ++V+ LV+ G + D+ G L A N L+++
Sbjct: 136 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 195
Query: 408 TTHSDHETA---AVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELS 464
S + T + +L + + N + + + + + ++ +
Sbjct: 196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 255
Query: 465 FKTGECIIVL 474
+ + I+
Sbjct: 256 GERKDSILEN 265
Score = 60.4 bits (146), Expect = 3e-10
Identities = 16/99 (16%), Positives = 31/99 (31%)
Query: 289 QEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGIT 348
+ ++ + + LE + + +A + G T
Sbjct: 226 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 285
Query: 349 ALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAA 387
L+ A G+ IV L+ +G D + G P+ A
Sbjct: 286 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 60.0 bits (145), Expect = 4e-10
Identities = 17/78 (21%), Positives = 34/78 (43%)
Query: 328 LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAA 387
+V K R ++ + + + + + +NAQDS+G L+ AA
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 291
Query: 388 SCNNLAMVRFLVEHGACI 405
N+++V L+++GA
Sbjct: 292 RLGNISIVDALLDYGADP 309
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 61.1 bits (149), Expect = 2e-12
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 451 ALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
A YD+ + EL K G+ I + R+ W KL +KEG+VP
Sbjct: 5 AAYDFPGSGSPSELPLKKGDVIYITREEPSG---WSLGKLLDGSKEGWVPTA 53
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 63.9 bits (155), Expect = 2e-12
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
A YD+ A + ELS K G+ I +L K + ++ WW ++ + G+ P N +
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIKILNK--KGQQGWWRGEIYGRIGWFPSNYV 58
Score = 32.4 bits (73), Expect = 0.16
Identities = 4/47 (8%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 436 SVQEKLGILNNGAVYALYDYEANNTDELSFKTGE--CIIVLRKGDEN 480
+ E + V+ Y + E ++ + + +
Sbjct: 92 TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEHSLEHH 138
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 61.0 bits (148), Expect = 2e-12
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
+ Y A DELS G + V+ + WW N + G+ P N
Sbjct: 6 VXFAYVAEREDELSLVXGSRVTVMEXCSDG---WWRGSYNGQIGWFPSN 51
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 61.2 bits (149), Expect = 3e-12
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 451 ALYDYEAN-NTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
A YD+ + ++ EL K G+ + + R W +KL +KEG+VP
Sbjct: 7 AAYDFPGSGSSSELPLKKGDIVFISRDEPSG---WSLAKLLDGSKEGWVPTA 55
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 61.8 bits (150), Expect = 3e-12
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 449 VYALYDYEANNT--------DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
AL+DY+ +EL FK G+ I V D + ++ + + G +P N
Sbjct: 20 FVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADG--FYRGETCARLGLIPCN 76
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 66.6 bits (162), Expect = 3e-12
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 342 ANDEGITALHNAICAGH---FDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
A LH A+ + +V F++Q G ++A+ +DG LH AA N ++ L
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245
Query: 399 VEHGA 403
++ A
Sbjct: 246 LKGRA 250
Score = 58.5 bits (141), Expect = 1e-09
Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 8/168 (4%)
Query: 239 PPLPTTEPPSDDNINNN---IEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIK 295
P +P ++ ++ I + F+ + R+ + + +
Sbjct: 115 PSHGGPKPSAESDMGTRRDYIMAKYVEH--RFARRCTPEPQRLWTAICNRDLLSVLEAFA 172
Query: 296 SALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLV---KDPSAANDEGITALHN 352
+ G+ +L A + ++ A +G TALH
Sbjct: 173 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232
Query: 353 AICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
A D ++ L++ V + G L A ++ L +
Sbjct: 233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 60.0 bits (146), Expect = 6e-12
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 444 LNNGAVY--ALYDYEAN--NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
L NG +Y + N + L+ + GE + V + W + N K G+ P
Sbjct: 2 LQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSG---QWEGECNGKRGHFPFT 58
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 61.0 bits (148), Expect = 6e-12
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
+Y Y N DEL G+ I + + E W S G +P N
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPEN 72
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 60.6 bits (147), Expect = 7e-12
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENERE--WWWSKLNN-KEGYVPRNLLGLYP 505
A++DYEA +EL+ + G+ + VL + + WW +L + + G P N Y
Sbjct: 32 WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSN----Y- 86
Query: 506 RVQP 509
V P
Sbjct: 87 -VAP 89
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 62.9 bits (152), Expect = 9e-12
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 420 CEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDE 479
F+ S+ V + + +L F+ GE + +L K ++
Sbjct: 92 IPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQ 151
Query: 480 NEREWWWSK-LNNKEGYVPRN 499
+ WW ++ G VP N
Sbjct: 152 D---WWEARNALGTTGLVPAN 169
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 59.7 bits (145), Expect = 1e-11
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 449 VYALYDYEANNT-------DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
+ ALYDY+ + EL+F TG+ I V + DE+ +++ +LN ++G VP N
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDED--GFYYGELNGQKGLVPSN 65
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 61.1 bits (148), Expect = 1e-11
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRNLLGLYPRV 507
LY+++A DEL GE + + D EW+ +K N G VP + + + +
Sbjct: 8 TLYEFKAERDDELDVSPGENLSICAHYDY---EWFIAKPINRLGGPGLVPVSYVRIIDLM 64
Query: 508 QPSATP 513
P+
Sbjct: 65 DPAKYA 70
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 59.3 bits (144), Expect = 1e-11
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 449 VYALYDYEANNTD--ELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
ALY Y+A++ D E+SF+ E + V + E WW ++ N + G +P N
Sbjct: 8 AKALYPYDADDDDAYEISFEQNEILQVS----DIEGRWWKARRANGETGIIPSN 57
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 59.3 bits (144), Expect = 1e-11
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 449 VYALYDYEANNT-------DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
+ A DY+ + L+ + G+ ++V D+ +++ +L G VP +
Sbjct: 10 MIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQ--GFYYGELGGHRGLVPAH 65
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 65.7 bits (160), Expect = 1e-11
Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 15/192 (7%)
Query: 317 LLDASLEGELELVMKTARLVKDPSA------ANDEGITALHNAICA---GHFDIVRFLVQ 367
L A +L V++ +D A LH A+ +V F++Q
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 368 FGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGF 427
G ++A+ +DG LH AA N ++ L++ A + + + ++
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA---RKKHH 252
Query: 428 EGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS 487
+ C E L Q ++ Y + + + S + L +
Sbjct: 253 KECEELLEQAQAGTF---AFPLHVDYSWVISTENLSSDSSLSSPSALNSLSSPSALNSTA 309
Query: 488 KLNNKEGYVPRN 499
+ +
Sbjct: 310 SNSPGIEGLSNK 321
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 64.2 bits (156), Expect = 1e-11
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 340 SAANDEGITALHNAICAG---HFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
+ ++ TALH A+ + IV FLVQ +++ Q G LH +N ++
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 222
Query: 397 FLVEHGACIFATTHS 411
L+ A I S
Sbjct: 223 LLLRGKASIEIANES 237
Score = 56.9 bits (137), Expect = 3e-09
Identities = 11/63 (17%), Positives = 23/63 (36%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
+ +G TALH + + ++ L++ + + G PL A +
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEEL 256
Query: 398 LVE 400
L +
Sbjct: 257 LTQ 259
Score = 31.1 bits (70), Expect = 0.73
Identities = 9/34 (26%), Positives = 10/34 (29%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCD 371
AN+ G T L A H L Q
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 59.8 bits (145), Expect = 1e-11
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 449 VYALYDYEANNTD-ELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRNLLGLY 504
ALYD+ N + E++ K G+ + +L K D + +WW + N GY+P N + +
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 76
Query: 505 PRVQPSATPQ 514
R +
Sbjct: 77 KRRKKIEHVD 86
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 58.6 bits (142), Expect = 2e-11
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN 490
V ALYDY+ + E++ K G+ + +L +++ WW ++N
Sbjct: 24 VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVN 62
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 58.2 bits (141), Expect = 3e-11
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL----NNKEGYVPRN 499
++ DYE + + F+ G + VL + WW+ ++ +G+VP N
Sbjct: 15 SIADYEGDE-ETAGFQEGVSMEVLERNPN---GWWYCQILDGVKPFKGWVPSN 63
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 58.2 bits (141), Expect = 4e-11
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK-----EGYVPRN 499
Y A+ +++LS G+ I++L+K WW +L + +G+ P +
Sbjct: 10 AQVTSAYVASGSEQLSLAPGQLILILKKNTSG---WWQGELQARGKKRQKGWFPAS 62
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 57.7 bits (140), Expect = 4e-11
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
A++ + + DEL + + ++V + ++ W+ + G P
Sbjct: 9 HRAIFRFVPRHEDELELEVDDPLLVELQAEDY---WYEAYNMRTGARGVFPAY 58
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 62.9 bits (152), Expect = 5e-11
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
V + + +L F+ GE + +L K +++ WW ++ G VP N
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQD---WWEARNALGTTGLVPAN 198
Score = 50.2 bits (119), Expect = 7e-07
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
A + +L K G+ ++V +K + ++L+ + G VP
Sbjct: 256 RVPNAYDPTQLRVKKGQTVLVTQKMSNG---MYKAELDGQIGSVPHT 299
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 57.3 bits (139), Expect = 5e-11
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 449 VYALYDYE--ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
A+ A + L+ + G+ + V R W ++N ++G P
Sbjct: 4 AKAIQKRVPCAYDKTALALEVGDIVKVTRMNING---QWEGEVNGRKGLFPFT 53
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 58.0 bits (140), Expect = 6e-11
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 449 VYALYDYE------ANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNL 500
A Y Y N EL G+ + V DE + ++ L+ + G VP N
Sbjct: 20 CVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDE---DGFYEGELLDGQRGLVPSNF 76
Query: 501 LGLYPRVQPSATPQ 514
+ +
Sbjct: 77 VDFVQDNESRLAST 90
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 57.0 bits (138), Expect = 9e-11
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 449 VYALYDYEAN-NTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
+YD+ A +EL+ GE I V W ++G VP +
Sbjct: 12 ARVMYDFAAEPGNNELTVTEGEIITVTNPNVG---GGWLEGKNNKGEQGLVPTD 62
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 56.0 bits (136), Expect = 1e-10
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
A++ + + DEL + + ++V + ++ W+ + G P
Sbjct: 6 HRAIFRFVPRHEDELELEVDDPLLVELQAEDY----WYEAYNMRTGARGVFPAY 55
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 62.1 bits (150), Expect = 1e-10
Identities = 31/139 (22%), Positives = 41/139 (29%), Gaps = 3/139 (2%)
Query: 268 STESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELE 327
R P S + + S P ALL AS
Sbjct: 154 IRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSL 213
Query: 328 LVMKTARLV---KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLH 384
M A + + T L A A FL+Q G +VN DS G PLH
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273
Query: 385 CAASCNNLAMVRFLVEHGA 403
A + + ++ GA
Sbjct: 274 HATILGHTGLACLFLKRGA 292
Score = 50.6 bits (120), Expect = 6e-07
Identities = 30/169 (17%), Positives = 53/169 (31%)
Query: 232 TKDTSCPPPLPTTEPPSDDNINNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEI 291
+ P +PP + + +E + + +
Sbjct: 154 IRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSL 213
Query: 292 AEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALH 351
+ AL G D L+ A+ L + + + A+ G LH
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273
Query: 352 NAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
+A GH + ++ G D+ A+DS+G PL A N +V L
Sbjct: 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 34.0 bits (77), Expect = 0.095
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 344 DEGITALHNAICAGHFDIVRFLVQFGCDVNAQDS--DGWMPLHCAASCNNLAMVRFLVEH 401
G + + + G DVN + D PL A + N+L FL+++
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN 257
Query: 402 GACIFATTHS 411
GA + +
Sbjct: 258 GANVNQADSA 267
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 56.3 bits (136), Expect = 1e-10
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
V+ + +TD L K G+ I ++ K W LNNK G
Sbjct: 14 VHTDFTPSPYDTDSLKLKKGDIIDIISKPPMG---TWMGLLNNKVGTFKFI 61
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 56.2 bits (136), Expect = 1e-10
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 449 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
V ++ + A NN LSF G+ + +L +++ W + + G+ P +
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKD--GWLYGEHDTTKARGWFPSS 61
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 57.8 bits (139), Expect = 1e-10
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENERE--WWW----------SKLNNKEGYV 496
V A +DY A +TDEL K G+ ++V+ + E++ W +L G
Sbjct: 47 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVF 106
Query: 497 PRN 499
P N
Sbjct: 107 PEN 109
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 55.8 bits (135), Expect = 2e-10
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 449 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
V ++ + A +N LSF G+ I +L +++ W + + + G+ P +
Sbjct: 9 VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKD--GWLYGEHDVSKARGWFPSS 60
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 56.3 bits (136), Expect = 2e-10
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
A + L+ + G+ + V R W ++N ++G P
Sbjct: 21 AIQKRVPCAYDKTALALEVGDIVKVTRMNING---QWEGEVNGRKGLFPFT 68
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 61.6 bits (150), Expect = 2e-10
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
A Y++ +L F G+ + ++ + W+ +EG +P N
Sbjct: 16 AKYNFHGTAEQDLPFCKGDVLTIV---AVTKDPNWYKAKNKVGREGIIPAN 63
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 55.8 bits (134), Expect = 3e-10
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLGLYPRVQP 509
A ++ A ++S G+ + V++K D + W +G+V + L Y +
Sbjct: 22 AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRS 81
Query: 510 SATPQ 514
+
Sbjct: 82 HSDAS 86
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 60.4 bits (145), Expect = 3e-10
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
AL+D+ N+ EL+FK G+ I +L + +++ W + G P + + +
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLSFVKILKDFP 233
Query: 509 PSATPQ 514
P
Sbjct: 234 EEDDPT 239
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 56.2 bits (135), Expect = 4e-10
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 20/82 (24%)
Query: 428 EGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW-- 485
+ CS + AL DY A + L+ G+ + V K R +W
Sbjct: 16 QECSHPISMAV------------ALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGG 63
Query: 486 ------WSKLNNKEGYVPRNLL 501
+ L + GY P +++
Sbjct: 64 SVQGDYYGDLAARLGYFPSSIV 85
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 60.6 bits (147), Expect = 5e-10
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
ALYD+ A+ + LS GE + VL + EW ++ N +G+VP N
Sbjct: 46 FVALYDFVASGDNTLSITKGEKLRVLGY--NHNGEWCEAQTKNGQGWVPSN 94
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 54.6 bits (132), Expect = 5e-10
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 449 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
V A++ + A +N+ LSFK G+ I +L + W S+ G+ P +
Sbjct: 10 VKAIFSHAAGDNSTLLSFKEGDLITLLVPEAR---DGWHYGESEKTKMRGWFPFS 61
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 54.7 bits (132), Expect = 6e-10
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
V + A DE++ + + ++VL++ D W + + G+ P +
Sbjct: 20 VEITKAFFAKQADEVTLQQADVVLVLQQEDG-----WLYGERLRDGETGWFPED 68
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 54.1 bits (130), Expect = 1e-09
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 457 ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
A E++ K G+ + +L +++ WW ++N+++G+VP
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA 41
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 57.6 bits (138), Expect = 1e-09
Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 6/144 (4%)
Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCS 431
+N+ +P A ++ R + F + + E + + E S
Sbjct: 64 INSSGPRPPVPPSPAQPPPGVSPSRLRIGD--QEFDSLPALLEFYKIHYLDTTTLIEPVS 121
Query: 432 EFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LN 490
L V AL+D+ N+ ++L FK G+ + + K +E WW ++
Sbjct: 122 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSE 178
Query: 491 NKEGYVPRNLLGLYPRVQPSATPQ 514
K G +P + Y S +
Sbjct: 179 GKRGMIPVPYVEKYRPASASVSAL 202
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 58.9 bits (143), Expect = 2e-09
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Query: 442 GILNNGA---VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYV 496
G + +G V ALYDYEA + ++LSF+ G+ ++VL E EWW S KEGY+
Sbjct: 1 GAMGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYI 56
Query: 497 PRN 499
P N
Sbjct: 57 PSN 59
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 58.1 bits (139), Expect = 2e-09
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
V A + L+ + GE + V + W + N K G+ P + R+
Sbjct: 242 VIQKRVPNAYDKTALALEVGELVKVTKINVSG---QWEGECNGKRGHFPFT----HVRLL 294
Query: 509 PSATPQ 514
P+
Sbjct: 295 DQQNPE 300
Score = 49.2 bits (116), Expect = 2e-06
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWW-SKLNNKEGYVPRNLLGLYPRVQPSA 511
+D+ N+ ++L FK G+ + + K +E WW K G +P + Y S
Sbjct: 141 FDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSEGKRGMIPVPYVEKYRPASASV 197
Query: 512 TPQ 514
+
Sbjct: 198 SAL 200
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 52.9 bits (127), Expect = 2e-09
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 449 VYALYDYE-ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
V AL D+ ++ L+ + G+ I VL + + W ++ + R +G +P
Sbjct: 21 VRALKDFWNLHDPTALNVRAGDVITVLEQHPDG---RWKGHIHESQRGTDR--IGYFP 73
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 52.3 bits (126), Expect = 3e-09
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 461 DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ 514
E++ K G+ + +L +++ WW ++N+++G+VP Y + S T +
Sbjct: 4 REVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA----YVKKLDSGTGK 50
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 56.9 bits (136), Expect = 4e-09
Identities = 10/105 (9%), Positives = 25/105 (23%), Gaps = 7/105 (6%)
Query: 410 HSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGE 469
+ + + A + L+ + G+
Sbjct: 203 PAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGD 262
Query: 470 CIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ 514
+ V R W ++N ++G P + ++ P
Sbjct: 263 IVKVTRMNING---QWEGEVNGRKGLFPFT----HVKIFDPQNPD 300
Score = 52.3 bits (124), Expect = 1e-07
Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 13/145 (8%)
Query: 364 FLV--------QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHET 415
FLV + V+ ++ + + A + +
Sbjct: 36 FLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALL-EFYKIHYLD 94
Query: 416 AAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLR 475
E + + N V LYD+ N+ ++L FK GE ++++
Sbjct: 95 TTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIE 154
Query: 476 KGDENEREWWWSKL-NNKEGYVPRN 499
K +E WW ++ + + G +P
Sbjct: 155 KPEEQ---WWSARNKDGRVGMIPVP 176
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 57.1 bits (136), Expect = 8e-09
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRN 499
ALYDYE DELSFK G+ + + DE W +L+N + G P N
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQ--GWCKGRLDNGQVGLYPAN 480
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 56.5 bits (136), Expect = 1e-08
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
AL+D+ + EL FK G+ I V+ D REWWW ++ + EG+ P + + L
Sbjct: 33 AEALWDHVTMDDQELGFKAGDVIEVM---DATNREWWWGRVADGEGWFPASFVRLRVNQD 89
Query: 509 PS 510
Sbjct: 90 EP 91
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 55.1 bits (133), Expect = 3e-08
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
ALYDYE+ +LSFK GE + ++ + +WW S + GY+P N
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEG---DWWLAHSLSTGQTGYIPSN 54
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 50.0 bits (119), Expect = 3e-08
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 447 GAVY-ALYDYEANNTDELSFKTGECIIVLRKGDEN-----------EREWWW---SKLNN 491
G Y ALY + ++L G+ ++V R + + W ++
Sbjct: 11 GFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTR 70
Query: 492 KEGYVPRN 499
+ G P
Sbjct: 71 QRGDFPGT 78
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 52.1 bits (125), Expect = 1e-07
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
V +YDY A N DEL+F G+ I VL K D +WW +++ + G P N + L +
Sbjct: 5 VIGMYDYTAQNDDELAFSKGQIINVLNKEDP---DWWKGEVSGQVGLFPSNYVKLTTDMD 61
Query: 509 PSATPQ 514
PS
Sbjct: 62 PSQQWC 67
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 48.9 bits (116), Expect = 2e-07
Identities = 8/49 (16%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
A+Y+++ + +LS + G+ + + + + K +G P++
Sbjct: 64 AIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKS 111
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 48.9 bits (116), Expect = 5e-07
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
V AL+ YE ++ +L F+ GE + +L E EWW S +EG++P N
Sbjct: 15 VIALHSYEPSHDGDLGFEKGEQLRIL----EQSGEWWKAQSLTTGQEGFIPFN 63
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 50.3 bits (120), Expect = 1e-06
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
ALYDYE+ +LSFK GE + ++ + +WW S + GY+P N
Sbjct: 88 FVALYDYESRTETDLSFKKGERLQIVNNTEG---DWWLAHSLSTGQTGYIPSN 137
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Length = 82
Score = 43.4 bits (102), Expect = 6e-06
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN----KEGYVPRNLLGL 503
L D+ A ++ ELS + G+ + +L + W + +EG VP + L +
Sbjct: 20 TVVLQDFSAAHSSELSIQVGQTVELLER-PSERPGWCLVRTTERSPPQEGLVPSSTLCI 77
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 45.1 bits (106), Expect = 1e-05
Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLLGLYPRV 507
A+Y+++ + +LS + G+ + + +W+ L +G P++ + +
Sbjct: 22 AIYNFQGSGAPQLSLQIGDVVRIQETCG----DWYRGYLIKHKMLQGIFPKSFIHIKEVT 77
Query: 508 QPSATPQ 514
Sbjct: 78 VEKRRNT 84
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 41.9 bits (98), Expect = 2e-05
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY 504
Y + L G+ + + + E E WW + N+ G+ P N + Y
Sbjct: 22 YGIPPPPGAFGGFLRLNPGDIVELTKA--EAEHNWWEGRNTATNEVGWFPCNRVHPY 76
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 41.2 bits (96), Expect = 3e-05
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLR---------KGDENERE---WW--WSKLNNKEGYV 496
ALYDY+ +++ G+ + V + G E E W +++ + G
Sbjct: 10 ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 69
Query: 497 PRNLLGLYPRVQPS 510
P + R + S
Sbjct: 70 PGTYVEYIGRKKIS 83
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 40.5 bits (94), Expect = 1e-04
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL 501
A D + +ELSFK GE I ++R D N W + GY+ +
Sbjct: 33 ACCDVK-GGKNELSFKQGEQIEIIRITD-NPEGKWLGRTARGSYGYIKTTAV 82
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 39.2 bits (91), Expect = 2e-04
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 449 VYALYDYEAN------NTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNL 500
+ +Y L G+ + + + E E WW + N+ G+ P N
Sbjct: 7 MEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKA--EAEHNWWEGRNTATNEVGWFPCNR 64
Query: 501 LGLY 504
+ Y
Sbjct: 65 VHPY 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-04
Identities = 58/470 (12%), Positives = 134/470 (28%), Gaps = 159/470 (33%)
Query: 24 QIQSSMNSQKPVLFLLL------GITCLALAPSSSNSNNSTTSQIQSSMNSQKPVS--SV 75
+++ ++ +P +L+ G T +AL S +Q M+ + + ++
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK-------VQCKMDFK--IFWLNL 189
Query: 76 A----PTALHEQQQALVFQAASTKVHPVQPITLMSTSQQLSSVKDNKND--RTESHT--- 126
P + E Q L++Q + + ++ S++ +++ +
Sbjct: 190 KNCNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 127 -------DSETLSPKPALPPKPAVPIKS-----TPPPPPRQSNISSVDTNEEEVKNTTQV 174
+++ + A + T R + T+ TT +
Sbjct: 248 LVLLNVQNAKAWN---------AFNLSCKILLTT-----RFKQV----TDFLSAATTTHI 289
Query: 175 --VDAKGNLDMVKTGQL-----EQRIFNL-----------------NLRD----SDN--- 203
L + L + R +L ++RD DN
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 204 --NKRLNGSIAISTQELDGSQPRRA--TLSIVTKDTSCPPPL--------PTTEPPSDDN 251
+L I S L+ ++ R+ LS+ P L ++ N
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 252 -------INNNIEDIKEDKTS------DFSTESPDQTD---RVINS------------SP 283
+ + KE S + + ++ +++ P
Sbjct: 410 KLHKYSLVE---KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 284 SDSNN---QEIA-EIKSALKSGK-------------LGKKRCVSFDPLALLLDASLEGEL 326
+ I +K+ + L +K + D A S+ L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSILNTL 524
Query: 327 ELVMKTARLVKDPSAANDEGITAL--------HNAICAGHFDIVRFLVQF 368
+ + + D + + A+ N IC+ + D++R +
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 40.6 bits (94), Expect = 7e-04
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDEN------EREWWWSKLNNKEG 494
+ ++ E + L F G+ VL W + ++
Sbjct: 7 IRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDL 58
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 38.5 bits (88), Expect = 0.003
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW 486
V A +DY A +TDEL K G+ ++V+ + E++ W
Sbjct: 145 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGW 182
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.019
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 17/40 (42%)
Query: 289 QEIAEIKSALK-----SGKLGKKRCVSFDPLALLLDASLE 323
Q + +++++LK S P AL + A++E
Sbjct: 20 QALKKLQASLKLYADDSA-----------P-ALAIKATME 47
Score = 29.1 bits (64), Expect = 1.7
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 15/41 (36%)
Query: 109 QQLSSVKDNKNDRTESHTDSETL-SPKPALPPKPAVPIKST 148
+Q ++K + ++ S L + A PA+ IK+T
Sbjct: 19 KQ--ALK-----KLQA---SLKLYADDSA----PALAIKAT 45
Score = 28.4 bits (62), Expect = 3.9
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 10/32 (31%)
Query: 61 QIQSSMNSQKPVSSVAPTALHEQQQALVFQAA 92
++Q+S+ S AP AL +A
Sbjct: 24 KLQASLKLYADDS--AP--------ALAIKAT 45
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 34.3 bits (79), Expect = 0.071
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 449 VYALYDYEANNTD-----ELSFKTGECIIVLRKGDENEREWW 485
+ AL+DY+ LSF+ G+ + V+ GDE WW
Sbjct: 4 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEE---WW 42
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 33.4 bits (75), Expect = 0.18
Identities = 12/82 (14%), Positives = 27/82 (32%)
Query: 413 HETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECII 472
+ E+ + +Y + + ++ + ++YE + LSF GE
Sbjct: 65 LFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFR 124
Query: 473 VLRKGDENEREWWWSKLNNKEG 494
V+ + W + K
Sbjct: 125 VVDTLYNGKLGSWLAIRIGKNH 146
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 74
Score = 30.5 bits (68), Expect = 0.20
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWW------SKLNNKEGYVPRNLLGLYP 505
+ DY A +E+ GE + VL N++ EG+VP ++L P
Sbjct: 13 IKDYYALKENEICVSQGEVVQVLA---VNQQNMCLVYQPASDHSPAAEGWVPGSILA--P 67
Query: 506 RVQPSA 511
PS+
Sbjct: 68 FSGPSS 73
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 32.4 bits (74), Expect = 0.32
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 449 VYALYDYEANNTDE-----LSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
V AL+DY+ N D L FK G+ + V D+ WW ++ + + +G+
Sbjct: 8 VRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDE---WWQARRVLGDNEDEQ--IGI 62
Query: 504 YP 505
P
Sbjct: 63 VP 64
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 32.5 bits (73), Expect = 0.32
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG 494
++YE + LSF GE V+ + W + K
Sbjct: 113 FEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNH 154
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 31.0 bits (70), Expect = 0.97
Identities = 18/116 (15%), Positives = 28/116 (24%), Gaps = 12/116 (10%)
Query: 43 TCLALAPSSSNSNNSTTSQIQSSMNSQKPVSSVAPTALHEQQQALVFQAASTKVHP--VQ 100
TC + + ++I + +S S+ A Q P
Sbjct: 335 TCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYA 394
Query: 101 PITLMSTSQQLSSVKDNKNDRTESHTDSETLSPKPALPPKPAVPIKSTPPPPPRQS 156
P Q + P+ PP P + PP P Q
Sbjct: 395 PPPQGYPPQGYPP----------QGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQG 440
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics,
PSI-2, protein ST initiative; NMR {Agrobacterium
tumefaciens str}
Length = 112
Score = 28.6 bits (64), Expect = 1.7
Identities = 7/50 (14%), Positives = 19/50 (38%)
Query: 250 DNINNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALK 299
++ D +E + D + ++++ + E+ I +AL
Sbjct: 25 RRLHKIEADFEEPRNPDDEDRASERSNDEVLDELGQVGQDELRAIDAALA 74
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 1.8
Identities = 13/89 (14%), Positives = 22/89 (24%), Gaps = 21/89 (23%)
Query: 311 FDPLA-----LLLDASLEGELELVM---KTARLVKD---------PSAANDEGITALHNA 353
F+ ++ + +E +LE +TA K E L
Sbjct: 912 FNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKG 971
Query: 354 ICAGHFDIVRFLVQFGCDVNAQDSDGWMP 382
+RF + GW
Sbjct: 972 ATLYIPKALRFDRLVAGQI----PTGWNA 996
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 28.8 bits (65), Expect = 3.9
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 29/91 (31%)
Query: 288 NQEIAEIKSALKSGKLGK---KRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAAND 344
+ K + +G +GK R DP++ + K + A+
Sbjct: 135 DDSYRYAKKIVDNGDIGKIIYMRGYGIDPISGMESF---------------TKFATEADS 179
Query: 345 EGI---TALHNAICAGHFDIVRFLVQFGCDV 372
GI +H+ D++R+ G D
Sbjct: 180 GGIFVDMNIHD------IDLIRWF--TGQDP 202
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding,
cytoplasm, acetylation, cytoskeleton, actin-binding;
1.1A {Mus musculus}
Length = 26
Score = 25.4 bits (55), Expect = 3.9
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 137 LPPKPAVP-IKSTPPPPP 153
+PP P +P + S PPPPP
Sbjct: 1 IPPPPPLPGVASIPPPPP 18
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.45A
{Rhodopseudomonas palustris}
Length = 392
Score = 28.8 bits (65), Expect = 4.5
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 24/57 (42%)
Query: 405 IFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI------LNN---GAVYAL 452
+ A ++ A+ E VQ LG+ +N A + L
Sbjct: 143 LCACSNMQRAYPAMAIE---------------VQNALGLGGFAFDMNVACSSATFGL 184
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins,
electron transfer complex, TTQ, electron transport,
oxidoreductase, periplasm, transport, metal- binding;
HET: TRQ; 2.50A {Paracoccus versutus}
Length = 426
Score = 28.9 bits (63), Expect = 4.5
Identities = 19/118 (16%), Positives = 27/118 (22%), Gaps = 5/118 (4%)
Query: 73 SSVAPTALHEQQQALVFQAASTKVHPVQPITLMSTSQQLSSVKDNKNDRTESHTDSETLS 132
P L L A + Q + ++ D +E +
Sbjct: 5 RESTPRYLTLIGATLACSALALGAAQAQTEPAEPEAPAETAAADAAGQTEGQRGAAEAAA 64
Query: 133 PKPALPPKPAVPIKSTPPPPPRQSNISSVDTNEEEVKNTTQVVDAKGN--LDMVKTGQ 188
A I P P R+ I D V+D L M G
Sbjct: 65 ALAAGEA-DEPVILEAPAPDARRVYIQ--DPAHFAAITQQFVIDGSTGRILGMTDGGF 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.125 0.357
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,061,588
Number of extensions: 402169
Number of successful extensions: 1792
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1383
Number of HSP's successfully gapped: 512
Length of query: 514
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 416
Effective length of database: 3,965,535
Effective search space: 1649662560
Effective search space used: 1649662560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (26.4 bits)