BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7684
         (332 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
 pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
          Length = 280

 Score = 31.6 bits (70), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 22/84 (26%)

Query: 101 LRGQVDQNKMNN----------ISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDL 150
           + GQ+  + +NN           SLS DL  +R+   ++ K L MA           E L
Sbjct: 207 MTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRL-MA-----------ECL 254

Query: 151 KRGRTHQPSHPHLSAELENLRREL 174
           K+ R  +PS P + AE+E L REL
Sbjct: 255 KKKRDERPSFPRILAEIEELAREL 278


>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx3203
 pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx3203
          Length = 292

 Score = 31.2 bits (69), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 22/84 (26%)

Query: 101 LRGQVDQNKMNN----------ISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDL 150
           + GQ+  + +NN           SLS DL  +R+   ++ K L MA           E L
Sbjct: 219 MTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRL-MA-----------ECL 266

Query: 151 KRGRTHQPSHPHLSAELENLRREL 174
           K+ R  +PS P + AE+E L REL
Sbjct: 267 KKKRDERPSFPRILAEIEELAREL 290


>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx4032
 pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx4032
          Length = 289

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 22/83 (26%)

Query: 101 LRGQVDQNKMNN----------ISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDL 150
           + GQ+  + +NN           SLS DL  +R+   ++ K L MA           E L
Sbjct: 219 MTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRL-MA-----------ECL 266

Query: 151 KRGRTHQPSHPHLSAELENLRRE 173
           K+ R  +PS P + AE+E L RE
Sbjct: 267 KKKRDERPSFPRILAEIEELARE 289


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.127    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,116,203
Number of Sequences: 62578
Number of extensions: 225203
Number of successful extensions: 825
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 44
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)