Query psy7684
Match_columns 332
No_of_seqs 42 out of 44
Neff 2.8
Searched_HMMs 46136
Date Sat Aug 17 00:45:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0515|consensus 99.6 3.6E-17 7.7E-22 166.0 0.3 79 166-283 2-80 (752)
2 PF06785 UPF0242: Uncharacteri 94.7 0.63 1.4E-05 46.9 12.7 163 36-228 55-225 (401)
3 TIGR01005 eps_transp_fam exopo 88.9 34 0.00073 36.0 18.1 69 78-149 200-269 (754)
4 TIGR03007 pepcterm_ChnLen poly 88.0 30 0.00064 34.3 17.8 69 79-149 168-236 (498)
5 PF09304 Cortex-I_coil: Cortex 84.8 3.4 7.4E-05 35.5 6.4 73 93-176 13-86 (107)
6 PF15070 GOLGA2L5: Putative go 80.1 28 0.00061 37.2 12.4 33 121-153 33-65 (617)
7 TIGR01005 eps_transp_fam exopo 78.0 29 0.00062 36.5 11.6 107 79-192 288-403 (754)
8 PRK10929 putative mechanosensi 77.2 1.4E+02 0.0031 34.4 17.3 108 110-221 102-236 (1109)
9 KOG0980|consensus 74.3 1.7E+02 0.0036 33.5 18.5 92 114-214 463-554 (980)
10 PF10174 Cast: RIM-binding pro 74.1 1.5E+02 0.0032 32.9 23.7 192 33-230 130-366 (775)
11 PRK04406 hypothetical protein; 72.5 4.3 9.3E-05 32.3 3.1 37 18-54 2-48 (75)
12 PRK11281 hypothetical protein; 71.7 2E+02 0.0043 33.2 19.8 31 189-222 226-256 (1113)
13 KOG0977|consensus 70.3 1.6E+02 0.0035 31.6 14.7 132 57-192 123-281 (546)
14 PF10186 Atg14: UV radiation r 67.6 95 0.0021 28.0 11.4 61 167-227 93-153 (302)
15 TIGR01010 BexC_CtrB_KpsE polys 66.0 40 0.00086 32.3 8.7 133 79-226 177-311 (362)
16 PRK04863 mukB cell division pr 65.2 2.6E+02 0.0056 33.3 16.2 31 32-62 356-386 (1486)
17 PF00038 Filament: Intermediat 65.1 1.2E+02 0.0026 28.2 11.9 33 193-225 255-287 (312)
18 KOG0994|consensus 65.0 1.1E+02 0.0023 36.3 12.9 99 83-199 1198-1297(1758)
19 PF08317 Spc7: Spc7 kinetochor 63.7 1.4E+02 0.0031 28.8 12.0 84 135-227 181-264 (325)
20 PF09726 Macoilin: Transmembra 61.3 1.2E+02 0.0026 33.1 12.0 110 99-215 456-581 (697)
21 PF08317 Spc7: Spc7 kinetochor 60.4 1.7E+02 0.0036 28.3 14.8 21 163-183 274-294 (325)
22 PRK00295 hypothetical protein; 60.1 12 0.00025 29.2 3.3 45 18-62 3-50 (68)
23 PF10498 IFT57: Intra-flagella 60.1 45 0.00097 33.4 8.1 50 164-214 307-356 (359)
24 PF04102 SlyX: SlyX; InterPro 59.3 8.1 0.00018 29.8 2.3 47 19-65 3-52 (69)
25 PRK11519 tyrosine kinase; Prov 58.5 2.6E+02 0.0056 29.9 16.4 108 78-217 273-380 (719)
26 PF07888 CALCOCO1: Calcium bin 57.4 2.8E+02 0.006 29.9 18.4 195 32-229 228-441 (546)
27 PRK09841 cryptic autophosphory 57.2 2.7E+02 0.0059 29.8 16.7 29 78-106 273-301 (726)
28 PF13851 GAS: Growth-arrest sp 56.5 1.1E+02 0.0025 27.9 9.5 94 133-226 64-169 (201)
29 PRK09039 hypothetical protein; 56.2 2.1E+02 0.0046 28.2 16.7 147 45-228 46-194 (343)
30 PRK02119 hypothetical protein; 55.8 14 0.0003 29.2 3.1 46 18-63 7-55 (73)
31 PRK02793 phi X174 lysis protei 55.5 16 0.00034 28.7 3.4 45 17-61 5-52 (72)
32 TIGR02169 SMC_prok_A chromosom 54.1 3.1E+02 0.0068 29.5 21.1 29 200-228 427-455 (1164)
33 smart00787 Spc7 Spc7 kinetocho 54.1 2.3E+02 0.0049 27.9 12.4 21 23-43 53-74 (312)
34 COG2960 Uncharacterized protei 53.4 1.4E+02 0.003 25.8 8.9 76 137-217 13-90 (103)
35 PF07111 HCR: Alpha helical co 52.5 3.8E+02 0.0082 30.0 23.1 171 30-220 337-534 (739)
36 PF03962 Mnd1: Mnd1 family; I 52.2 1.9E+02 0.004 26.4 10.3 109 102-227 42-155 (188)
37 PF09486 HrpB7: Bacterial type 52.2 1.8E+02 0.0039 26.4 9.9 105 111-218 16-125 (158)
38 TIGR02168 SMC_prok_B chromosom 51.4 3.3E+02 0.0072 29.1 21.5 16 201-216 902-917 (1179)
39 PRK00736 hypothetical protein; 51.0 20 0.00044 27.9 3.3 36 20-55 5-43 (68)
40 PRK06342 transcription elongat 49.6 46 0.001 29.7 5.8 50 164-220 33-84 (160)
41 PF13093 FTA4: Kinetochore com 45.8 34 0.00073 31.9 4.5 47 81-127 151-208 (213)
42 TIGR01843 type_I_hlyD type I s 45.5 2.7E+02 0.0058 26.3 14.6 145 78-228 80-238 (423)
43 TIGR01462 greA transcription e 45.3 86 0.0019 27.1 6.6 25 197-221 46-70 (151)
44 PF09787 Golgin_A5: Golgin sub 45.1 3.7E+02 0.008 27.8 15.4 24 202-225 387-410 (511)
45 TIGR01010 BexC_CtrB_KpsE polys 44.7 1.6E+02 0.0034 28.3 8.9 87 130-220 176-262 (362)
46 PF08614 ATG16: Autophagy prot 44.6 2.3E+02 0.005 25.3 9.6 106 104-222 82-187 (194)
47 TIGR02169 SMC_prok_A chromosom 44.2 4.4E+02 0.0096 28.4 22.9 19 198-216 474-492 (1164)
48 PRK04325 hypothetical protein; 43.4 31 0.00067 27.2 3.3 37 18-54 7-46 (74)
49 TIGR03017 EpsF chain length de 41.3 3.5E+02 0.0075 26.4 17.6 28 79-106 178-205 (444)
50 KOG1962|consensus 40.0 84 0.0018 30.0 6.2 41 112-152 153-193 (216)
51 KOG0161|consensus 39.7 8.4E+02 0.018 30.3 19.8 88 117-211 1083-1171(1930)
52 smart00787 Spc7 Spc7 kinetocho 39.6 3.8E+02 0.0083 26.4 12.6 68 116-184 217-290 (312)
53 TIGR01541 tape_meas_lam_C phag 36.7 4.4E+02 0.0095 26.2 11.2 20 165-184 80-99 (332)
54 PRK05892 nucleoside diphosphat 36.6 1.4E+02 0.003 26.5 6.7 57 165-221 11-75 (158)
55 PF07926 TPR_MLP1_2: TPR/MLP1/ 36.2 2.7E+02 0.0058 23.6 13.1 25 186-213 94-118 (132)
56 PF06818 Fez1: Fez1; InterPro 35.9 3.9E+02 0.0084 25.4 11.5 68 84-151 19-86 (202)
57 PF10186 Atg14: UV radiation r 35.9 3.3E+02 0.0072 24.6 10.8 29 122-150 18-46 (302)
58 PRK11637 AmiB activator; Provi 35.6 4.6E+02 0.0099 26.1 18.9 168 38-228 40-212 (428)
59 COG2433 Uncharacterized conser 35.2 4.2E+02 0.0091 29.3 11.0 32 197-228 471-502 (652)
60 COG4985 ABC-type phosphate tra 35.2 1.1E+02 0.0024 30.2 6.3 81 129-224 162-245 (289)
61 KOG0161|consensus 35.0 9.8E+02 0.021 29.8 17.8 165 27-195 1368-1538(1930)
62 PF12128 DUF3584: Protein of u 34.2 7.7E+02 0.017 28.3 20.1 24 127-150 362-385 (1201)
63 KOG4674|consensus 33.9 7.4E+02 0.016 30.6 13.5 120 92-213 1239-1366(1822)
64 COG3755 Uncharacterized protei 33.5 1.7E+02 0.0036 26.0 6.6 55 163-217 49-125 (127)
65 TIGR02680 conserved hypothetic 33.0 8.6E+02 0.019 28.5 21.2 132 25-174 210-342 (1353)
66 PF05622 HOOK: HOOK protein; 32.4 15 0.00032 38.9 0.0 39 115-153 486-524 (713)
67 TIGR00606 rad50 rad50. This fa 32.2 8.4E+02 0.018 28.1 20.4 36 117-153 779-814 (1311)
68 KOG0612|consensus 31.9 9.7E+02 0.021 28.7 18.6 34 191-224 614-647 (1317)
69 KOG4674|consensus 30.7 1.1E+03 0.025 29.2 15.3 99 131-232 731-830 (1822)
70 PRK15178 Vi polysaccharide exp 30.7 3E+02 0.0066 28.6 8.9 87 129-222 247-336 (434)
71 KOG2402|consensus 30.7 1.3E+02 0.0029 32.1 6.5 96 124-219 332-432 (525)
72 KOG0994|consensus 30.3 1.1E+03 0.023 28.8 18.7 104 118-224 1599-1706(1758)
73 PF10828 DUF2570: Protein of u 30.0 3.2E+02 0.007 22.6 8.8 84 79-172 25-110 (110)
74 PRK12704 phosphodiesterase; Pr 30.0 3.1E+02 0.0068 28.7 8.9 23 188-210 91-113 (520)
75 COG1579 Zn-ribbon protein, pos 29.2 5.3E+02 0.012 24.9 14.8 152 37-220 30-187 (239)
76 PF10168 Nup88: Nuclear pore c 28.9 8.1E+02 0.018 27.0 17.1 40 63-105 552-591 (717)
77 PF11629 Mst1_SARAH: C termina 28.2 1.5E+02 0.0033 22.6 4.7 35 181-221 6-40 (49)
78 PF07544 Med9: RNA polymerase 28.1 1E+02 0.0023 24.5 4.1 28 201-228 53-80 (83)
79 TIGR01461 greB transcription e 28.1 1.6E+02 0.0034 26.1 5.6 54 167-220 10-72 (156)
80 PRK10361 DNA recombination pro 27.6 7.6E+02 0.016 26.2 13.6 34 115-151 86-119 (475)
81 TIGR00606 rad50 rad50. This fa 27.2 1E+03 0.022 27.5 16.9 17 81-97 890-906 (1311)
82 PF06120 Phage_HK97_TLTM: Tail 26.6 6.5E+02 0.014 25.1 10.3 45 21-65 56-101 (301)
83 PRK00106 hypothetical protein; 25.8 4E+02 0.0087 28.4 8.9 31 188-218 106-136 (535)
84 PF03105 SPX: SPX domain; Int 25.4 1.2E+02 0.0026 26.4 4.4 41 112-155 97-137 (275)
85 TIGR03545 conserved hypothetic 25.4 2.2E+02 0.0047 30.2 7.0 69 107-176 157-230 (555)
86 PF04849 HAP1_N: HAP1 N-termin 25.1 1.7E+02 0.0037 29.3 5.8 51 117-180 62-126 (306)
87 PRK01885 greB transcription el 24.5 2.2E+02 0.0048 25.1 5.9 52 167-218 12-72 (157)
88 TIGR02680 conserved hypothetic 24.3 1.2E+03 0.026 27.4 17.9 39 115-153 880-918 (1353)
89 PRK15178 Vi polysaccharide exp 24.2 8.3E+02 0.018 25.6 10.6 77 53-138 224-300 (434)
90 KOG0243|consensus 24.2 1.2E+03 0.026 27.3 12.6 24 129-152 439-462 (1041)
91 PF15456 Uds1: Up-regulated Du 23.9 1.8E+02 0.004 25.2 5.1 28 191-218 72-99 (124)
92 PHA02562 46 endonuclease subun 23.6 7.5E+02 0.016 24.8 20.7 36 117-152 248-283 (562)
93 TIGR03319 YmdA_YtgF conserved 22.8 5.1E+02 0.011 27.2 8.9 17 188-204 85-101 (514)
94 PF05597 Phasin: Poly(hydroxya 22.6 4.8E+02 0.01 22.9 7.5 24 129-152 107-130 (132)
95 PF08182 Pedibin: Pedibin/Hym- 22.4 93 0.002 22.4 2.5 16 120-135 17-32 (35)
96 PRK00846 hypothetical protein; 22.1 1.1E+02 0.0025 24.8 3.3 47 18-64 11-60 (77)
97 PRK10884 SH3 domain-containing 22.0 2.6E+02 0.0057 26.0 6.1 67 84-153 91-168 (206)
98 COG1340 Uncharacterized archae 21.6 5.5E+02 0.012 25.7 8.5 58 163-220 198-255 (294)
99 PLN03019 carbonic anhydrase 21.4 1.1E+02 0.0023 30.9 3.7 58 110-173 73-130 (330)
100 PF11471 Sugarporin_N: Maltopo 20.6 1.5E+02 0.0032 22.9 3.5 25 204-228 29-53 (60)
No 1
>KOG0515|consensus
Probab=99.63 E-value=3.6e-17 Score=165.96 Aligned_cols=79 Identities=38% Similarity=0.547 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCcc
Q psy7684 166 ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGK 245 (332)
Q Consensus 166 EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa~qQk~~~~~~~~~~~~~~~~~~~ 245 (332)
||++||+||+|||+||++|+++|+||+ +|||.|||.||||++|||+|||+||+.++++++
T Consensus 2 el~rly~elq~rn~lnqeQnsklqqq~---nkRn~evA~mdkr~selr~rl~~Kk~~l~~i~~----------------- 61 (752)
T KOG0515|consen 2 ELTRLYGELQYRNNLNQEQNSKLQQQD---NKRNVEVAPMDKRTSELRSRLAHKKSTLPFISA----------------- 61 (752)
T ss_pred cccccccccccccccchhHHHHHHhhc---ccccceeecccchHHHHHHHHhhcccccccccC-----------------
Confidence 799999999999999999999999999 999999999999999999999999999776632
Q ss_pred hhhcccccccccccccccccccccCCCCceeEeccccc
Q psy7684 246 QQLVAQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYLH 283 (332)
Q Consensus 246 ~~~~~~~~~~~~~~i~~~n~~~~~~~~gnVAAVePy~h 283 (332)
++ .+ +++.++||||.||+|
T Consensus 62 ------------pQ---~~----~s~p~RVaAvgPyiq 80 (752)
T KOG0515|consen 62 ------------PQ---RM----SSPPVRVAAVGPYIQ 80 (752)
T ss_pred ------------cc---cc----cCCCceeeccCCCCC
Confidence 11 12 268899999999999
No 2
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.67 E-value=0.63 Score=46.94 Aligned_cols=163 Identities=24% Similarity=0.354 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhhHHHHHHHHHHHHhhccchhhhhhccCcc
Q psy7684 36 LEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISL 115 (332)
Q Consensus 36 LqemAtRQQQQIeaQqQlL~AKEqRLr~Lk~qe~r~~q~a~e~ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~N~~L 115 (332)
+=++--|-.|=-.+.-|||.+|- |-+. ...|-|+.+||-++.-.-- .++-+++|-+|
T Consensus 55 ff~i~~re~qlk~aa~~llq~ki---rk~~----------e~~eglr~i~es~~e~q~e----------~~qL~~qnqkL 111 (401)
T PF06785_consen 55 FFAIGRREKQLKTAAGQLLQTKI---RKIT----------EKDEGLRKIRESVEERQQE----------SEQLQSQNQKL 111 (401)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH---HHHH----------hccHHHHHHHHHHHHHHHH----------HHHHHHhHHHH
Confidence 34566677776777777887772 2221 1234577777766632221 23446789999
Q ss_pred hhhhHHHHHhhHH---HHHHHHHHHHHHHH----HHHhHHHhccCCCCCCCCCcchHHH-HHHHHHHHHHhhhcHHHhHH
Q psy7684 116 SSDLESIRALFNE---KEKELCMAVAKVEE----LTHQLEDLKRGRTHQPSHPHLSAEL-ENLRRELMYHNKLSEQQNVR 187 (332)
Q Consensus 116 ~~Eieqm~~LF~e---KqkEL~~AvskVee----Lt~QLE~LR~~r~~~~~~~~aa~EL-~kL~kEL~~rnkLn~~Qs~r 187 (332)
.+++-+.+.+|-. +..-|.-.+++.+| |.-||++|..-.+-. -- -+++| ..|..++-+..-||.++.+.
T Consensus 112 ~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ek--ee-esq~LnrELaE~layqq~L~~eyQat 188 (401)
T PF06785_consen 112 KNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEK--EE-ESQTLNRELAEALAYQQELNDEYQAT 188 (401)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHh--HH-HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999987 44455555666555 555666665543210 00 12333 23445566778899999999
Q ss_pred HHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q psy7684 188 LHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLAS 228 (332)
Q Consensus 188 L~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa~qQk~~ 228 (332)
+.+|+..|++|+.-+..++.++-+|---+ | .+.|++.
T Consensus 189 f~eq~~ml~kRQ~yI~~LEsKVqDLm~Ei---r-nLLQle~ 225 (401)
T PF06785_consen 189 FVEQHSMLDKRQAYIGKLESKVQDLMYEI---R-NLLQLES 225 (401)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHH---H-HHHHhhh
Confidence 99999999999999999999998764433 2 3445543
No 3
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.86 E-value=34 Score=36.02 Aligned_cols=69 Identities=14% Similarity=0.235 Sum_probs=57.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhccchhhhhhccCcch-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy7684 78 HERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLS-SDLESIRALFNEKEKELCMAVAKVEELTHQLED 149 (332)
Q Consensus 78 ~ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~N~~L~-~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~ 149 (332)
.+++..+|.+++.-|.+|...|.--|-++- .++.+. ++|..++.-+..-+.++..|.++.+.+..++..
T Consensus 200 ~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~---~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~ 269 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVAAYRAQSDLLMG---NNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQN 269 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccc---CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345888999999999999999998887763 566676 889999988888888899999998888888765
No 4
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.95 E-value=30 Score=34.30 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=51.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhccchhhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy7684 79 ERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLED 149 (332)
Q Consensus 79 ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~ 149 (332)
+.+..++.+++..|.+|...|.--|-++-. ..+.+.++|..+..-+..-+.++..+.++.+.|..++..
T Consensus 168 ~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~--~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~ 236 (498)
T TIGR03007 168 EQIKTYEKKLEAAENRLKAFKQENGGILPD--QEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGG 236 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457889999999999999988766654322 123466778888888888888888888887777776654
No 5
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.81 E-value=3.4 Score=35.52 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=63.2
Q ss_pred HHHHHHHhhccchhhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHH
Q psy7684 93 LKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRR 172 (332)
Q Consensus 93 aKLrklRalRGQVeq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~k 172 (332)
..=.+|++|-+-.+.-+.+.|-|..+-|.+++.++.=+.+-...+.++.+|..++.+++++ .|.+|+.+
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~-----------le~eK~ak 81 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN-----------LEDEKQAK 81 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 3345688888889999999999999999999999999999999999999999999999875 56788887
Q ss_pred -HHHH
Q psy7684 173 -ELMY 176 (332)
Q Consensus 173 -EL~~ 176 (332)
+|.-
T Consensus 82 ~~l~~ 86 (107)
T PF09304_consen 82 LELES 86 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 6543
No 6
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=80.08 E-value=28 Score=37.15 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=21.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccC
Q psy7684 121 SIRALFNEKEKELCMAVAKVEELTHQLEDLKRG 153 (332)
Q Consensus 121 qm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~ 153 (332)
+|+.-+..=-.|..-.+.+|.+|.++|..|+.-
T Consensus 33 qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q 65 (617)
T PF15070_consen 33 QMSEEVRTLKEEKEHDISRVQELERSLSELKNQ 65 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333334455688899999999999864
No 7
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=78.00 E-value=29 Score=36.54 Aligned_cols=107 Identities=18% Similarity=0.255 Sum_probs=61.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhccchhhhhh---------ccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy7684 79 ERLRRLRDRVEQQELKLRKLRALRGQVDQNKM---------NNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLED 149 (332)
Q Consensus 79 ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl---------~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~ 149 (332)
..++.||.+...-+.++..++.--|- ++.++ -...+.+|+..+.+.+ +.+...+.++++.|..++.+
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~-~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~---~~~~~~a~~~~~~L~~~l~~ 363 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLA-NHPRVVAAKSSLADLDAQIRSELQKITKSL---LMQADAAQARESQLVSDVNQ 363 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 45666777666666666555442211 11111 1112334444443333 56778888899999999999
Q ss_pred hccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhH
Q psy7684 150 LKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQR 192 (332)
Q Consensus 150 LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQR 192 (332)
++..... -|....|+..|.+|......+=+.--.++.+-+
T Consensus 364 ~~~~~~~---~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 364 LKAASAQ---AGEQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHh---CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9876431 223678888888888776665544444444433
No 8
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=77.21 E-value=1.4e+02 Score=34.35 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=60.0
Q ss_pred hccCcchhhhHHHHHhhHHHHHHHHHHHHHH--------------HHHHHhHHHhccCCCCC---CCCCcchHHHHHHHH
Q psy7684 110 MNNISLSSDLESIRALFNEKEKELCMAVAKV--------------EELTHQLEDLKRGRTHQ---PSHPHLSAELENLRR 172 (332)
Q Consensus 110 l~N~~L~~Eieqm~~LF~eKqkEL~~AvskV--------------eeLt~QLE~LR~~r~~~---~~~~~aa~EL~kL~k 172 (332)
++...|...+.+..+=+++-+++++.+-++. .++.++|.++++. +.. +..+...+....|..
T Consensus 102 ~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~-L~~~~~~~~~l~~a~~~~lqa 180 (1109)
T PRK10929 102 MSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERR-LQTLGTPNTPLAQAQLTALQA 180 (1109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHH-HhCCCCCCCcccHHHHHHHHH
Confidence 3444455566667777778888888777777 4455566666652 211 111112333445555
Q ss_pred HHHHHhhhcHH---------HhHH-HHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHH
Q psy7684 173 ELMYHNKLSEQ---------QNVR-LHQQRETLTKKQAEVNSVDLRISELQERLQRKRL 221 (332)
Q Consensus 173 EL~~rnkLn~~---------Qs~r-L~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKa 221 (332)
|+.+..--+.. +... .+.|++.+ ..++...|.+|..|++-+..||.
T Consensus 181 e~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~---~~~~~~l~~~~~~Lq~~in~kR~ 236 (1109)
T PRK10929 181 ESAALKALVDELELAQLSANNRQELARLRSELA---KKRSQQLDAYLQALRNQLNSQRQ 236 (1109)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544332221 1111 22333333 34567788999999999998883
No 9
>KOG0980|consensus
Probab=74.27 E-value=1.7e+02 Score=33.52 Aligned_cols=92 Identities=24% Similarity=0.303 Sum_probs=61.6
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHH
Q psy7684 114 SLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRE 193 (332)
Q Consensus 114 ~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe 193 (332)
.+..++..+...+.+-+++...+-.|-|+....||.||.-- .....|+++|.+++ -.+.+.++..+.+--+
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El------~~l~~e~~~lq~~~---~~~~qs~~~~~~~l~~ 533 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQEL------ALLLIELEELQRTL---SNLAQSHNNQLAQLED 533 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHh---hhHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666542 12445555555552 3466778888888899
Q ss_pred HhhhhhhhHHhHHHhHHHHHH
Q psy7684 194 TLTKKQAEVNSVDLRISELQE 214 (332)
Q Consensus 194 ~L~kRn~Eva~mDrRI~ELre 214 (332)
.|.+++.+++.+-.|..|...
T Consensus 534 ~l~~KD~~~~~~~~~~~e~~~ 554 (980)
T KOG0980|consen 534 LLKQKDRLAAELVAREEEREA 554 (980)
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 999999999988888755544
No 10
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=74.08 E-value=1.5e+02 Score=32.91 Aligned_cols=192 Identities=18% Similarity=0.290 Sum_probs=128.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HhHhHHHHHHHhhhhHHHHHHHHHHHHhhccc--
Q psy7684 33 LGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQ------QVAAEHERLRRLRDRVEQQELKLRKLRALRGQ-- 104 (332)
Q Consensus 33 LsELqemAtRQQQQIeaQqQlL~AKEqRLr~Lk~qe~r~~------q~a~e~ekLrrLRe~~e~QEaKLrklRalRGQ-- 104 (332)
+..|++=...-+-+|++|++.|.+....+.-|.. .=+- .....+..+++++ .-|+.+..+..+.-.
T Consensus 130 l~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e--~L~~~g~~~~~~~~~~~~~~~~~----~~e~~~~~le~lle~~e 203 (775)
T PF10174_consen 130 LERLRKTLEELQLRIETQQQTLDKADEEIEKLQE--MLQSKGLSAEAEEEDNEALRRIR----EAEARIMRLESLLERKE 203 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCcccchhhhhHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4455666677889999999999999888887743 1110 1122223333332 223333333222111
Q ss_pred --------hhhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCC--------------CCc
Q psy7684 105 --------VDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPS--------------HPH 162 (332)
Q Consensus 105 --------Veq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~--------------~~~ 162 (332)
.-+.++.+..-.+.++.+..++..|.......---++.|...+..|++...-+.. .+.
T Consensus 204 ~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~ 283 (775)
T PF10174_consen 204 KEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSL 283 (775)
T ss_pred HHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHH
Confidence 2345667777788888999999999988888777788888888888775431111 000
Q ss_pred ---------------chHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy7684 163 ---------------LSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLA 227 (332)
Q Consensus 163 ---------------aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa~qQk~ 227 (332)
.-.|+..++.+|.-++.=..+...++.--++.|..+..+...+.-=|..||.||-.|-..+-++.
T Consensus 284 ~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~ 363 (775)
T PF10174_consen 284 AMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQ 363 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 12355666666666666667777788888899999999999999999999999999988877776
Q ss_pred hhh
Q psy7684 228 SQL 230 (332)
Q Consensus 228 ~~~ 230 (332)
-++
T Consensus 364 ~~~ 366 (775)
T PF10174_consen 364 AQI 366 (775)
T ss_pred HHH
Confidence 443
No 11
>PRK04406 hypothetical protein; Provisional
Probab=72.49 E-value=4.3 Score=32.28 Aligned_cols=37 Identities=32% Similarity=0.368 Sum_probs=26.1
Q ss_pred hhhhhhhcccCc----------ccchhhHHHHHHHHHHhHHHHHHHH
Q psy7684 18 TLKAADLLTEGV----------ELTLGELEDMAVRQQAQIDSQRQLI 54 (332)
Q Consensus 18 ~~k~~~~l~~g~----------elTLsELqemAtRQQQQIeaQqQlL 54 (332)
++|+++.|+..+ +-|+.+|.+.-++||++|+.-+..+
T Consensus 2 ~~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql 48 (75)
T PRK04406 2 TEKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQM 48 (75)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666555544 7788899999999999997655433
No 12
>PRK11281 hypothetical protein; Provisional
Probab=71.72 E-value=2e+02 Score=33.25 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=21.7
Q ss_pred HHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHH
Q psy7684 189 HQQRETLTKKQAEVNSVDLRISELQERLQRKRLL 222 (332)
Q Consensus 189 ~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa 222 (332)
+.||+.++ .++...+.+|..|++-+..||..
T Consensus 226 ~~q~d~~~---~~~~~~~~~~~~lq~~in~kr~~ 256 (1113)
T PRK11281 226 QKQRDYLT---ARIQRLEHQLQLLQEAINSKRLT 256 (1113)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 35677888999999999998843
No 13
>KOG0977|consensus
Probab=70.29 E-value=1.6e+02 Score=31.62 Aligned_cols=132 Identities=19% Similarity=0.235 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHhhhhHHHHHH----HHHHHHhhccchhhhhhccCcchhhhHHHHHhhHHHHHH
Q psy7684 57 KEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQEL----KLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKE 132 (332)
Q Consensus 57 KEqRLr~Lk~qe~r~~q~a~e~ekLrrLRe~~e~QEa----KLrklRalRGQVeq~rl~N~~L~~Eieqm~~LF~eKqkE 132 (332)
++=|.+|.+.+.. ..+..+++.-...++..=|| -.++++.+.+.+..-+..|+.|-.+|..|+..+...=--
T Consensus 123 ~elr~~~~~~~k~----~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etll 198 (546)
T KOG0977|consen 123 KELRKKLEKAEKE----RRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLL 198 (546)
T ss_pred HHHHHHHHHHHHH----HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4456667665422 33444555544444444444 457888899999999999999999999999866553222
Q ss_pred HHHHHHHHHHHHHhHHHhccCCC----------CCCC-C----------CcchHHHHHHHHHHHHHhhh--cHHHhHHHH
Q psy7684 133 LCMAVAKVEELTHQLEDLKRGRT----------HQPS-H----------PHLSAELENLRRELMYHNKL--SEQQNVRLH 189 (332)
Q Consensus 133 L~~AvskVeeLt~QLE~LR~~r~----------~~~~-~----------~~aa~EL~kL~kEL~~rnkL--n~~Qs~rL~ 189 (332)
=.-+-.+|..|...|+-+....- ...+ . ..|-.|+..-|...+.+||= -.|=..+++
T Consensus 199 r~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~ 278 (546)
T KOG0977|consen 199 RVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQ 278 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23345566667666665554311 1111 2 12567777777777666664 455555555
Q ss_pred HhH
Q psy7684 190 QQR 192 (332)
Q Consensus 190 QQR 192 (332)
.=+
T Consensus 279 ~i~ 281 (546)
T KOG0977|consen 279 EIR 281 (546)
T ss_pred HHH
Confidence 444
No 14
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.58 E-value=95 Score=28.00 Aligned_cols=61 Identities=28% Similarity=0.297 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy7684 167 LENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLA 227 (332)
Q Consensus 167 L~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa~qQk~ 227 (332)
+++++..+.-+...=..........-+.+.+...++.....++..+...+..+|..+-+.-
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l 153 (302)
T PF10186_consen 93 LEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQEL 153 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333222222223333344555666777777788888888887776555443
No 15
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=66.02 E-value=40 Score=32.32 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=61.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhccchhhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCC-C
Q psy7684 79 ERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTH-Q 157 (332)
Q Consensus 79 ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~-~ 157 (332)
+.+..++.+++.=|.+|...|.-.|-++-.. +......+..+=+. +..++..+|.+|+..... +
T Consensus 177 ~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~--------~~~~~~~~i~~L~~-------~l~~~~~~l~~l~~~~~~~~ 241 (362)
T TIGR01010 177 NEVKEAEQRLNATKAELLKYQIKNKVFDPKA--------QSSAQLSLISTLEG-------ELIRVQAQLAQLRSITPEQN 241 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcChHH--------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhCCCCC
Confidence 3477888888888888888888766665322 11122222222222 334445566666654322 2
Q ss_pred CCCCcchHHHHHHHHHHHH-HhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy7684 158 PSHPHLSAELENLRRELMY-HNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQL 226 (332)
Q Consensus 158 ~~~~~aa~EL~kL~kEL~~-rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa~qQk 226 (332)
|.--..-.+++.|.+.+.- ..++-......+......+..-.-|+..-.....-+-.|+..-+....+.
T Consensus 242 P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~ 311 (362)
T TIGR01010 242 PQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADRQ 311 (362)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222234455555555432 11221111111222222233333444444445555666666655444433
No 16
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.17 E-value=2.6e+02 Score=33.27 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=13.6
Q ss_pred chhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7684 32 TLGELEDMAVRQQAQIDSQRQLIAAKEQRLR 62 (332)
Q Consensus 32 TLsELqemAtRQQQQIeaQqQlL~AKEqRLr 62 (332)
++.+|.+....+...++.....+...+..+.
T Consensus 356 ~LeELee~Lee~eeeLeeleeeleeleeEle 386 (1486)
T PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAE 386 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333333
No 17
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=65.06 E-value=1.2e+02 Score=28.21 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=21.6
Q ss_pred HHhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHH
Q psy7684 193 ETLTKKQAEVNSVDLRISELQERLQRKRLLNQQ 225 (332)
Q Consensus 193 e~L~kRn~Eva~mDrRI~ELreRL~kKKaa~qQ 225 (332)
..+..-+..++.++..|.+|+..+.+.-...+.
T Consensus 255 ~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 255 EEREEYQAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 334445666777888888888777766654443
No 18
>KOG0994|consensus
Probab=65.02 E-value=1.1e+02 Score=36.28 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=73.0
Q ss_pred HhhhhHHHHHHHHHHHHhhccchhhhhhccCcch-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCC
Q psy7684 83 RLRDRVEQQELKLRKLRALRGQVDQNKMNNISLS-SDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHP 161 (332)
Q Consensus 83 rLRe~~e~QEaKLrklRalRGQVeq~rl~N~~L~-~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~ 161 (332)
..+..+..=|.||.-||++ +++-+++ ++|++|...|.+-.++|..+--+.-++..-|.++-.. .+
T Consensus 1198 ay~s~f~~me~kl~~ir~i--------l~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~------~~ 1263 (1758)
T KOG0994|consen 1198 AYASRFLDMEEKLEEIRAI--------LSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNS------LP 1263 (1758)
T ss_pred hhHhHHHHHHHHHHHHHHH--------hcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc------cc
Confidence 4566777788899999998 7777776 5799999999999999988887777777777776543 33
Q ss_pred cchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhh
Q psy7684 162 HLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQ 199 (332)
Q Consensus 162 ~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn 199 (332)
.|+.||+-|-+|...-+++.. .|.+|-+.+.-.|
T Consensus 1264 ~a~~~LesLq~~~~~l~~~~k----eL~e~~~~ik~sd 1297 (1758)
T KOG0994|consen 1264 LAGKDLESLQREFNGLLTTYK----ELREQLEKIKESD 1297 (1758)
T ss_pred hhhhhHHHHHHHHHHHHHHHH----HHHHHHHHhhccC
Confidence 488999999999877666543 3444444444333
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.71 E-value=1.4e+02 Score=28.82 Aligned_cols=84 Identities=26% Similarity=0.309 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHHHH
Q psy7684 135 MAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQE 214 (332)
Q Consensus 135 ~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELre 214 (332)
..+.+-+.|...+..|+.... ..+..-..||..++.||. ++...+..-|..|...+.++..++..|+++.+
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~--e~~~~D~~eL~~lr~eL~-------~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVE--EIESCDQEELEALRQELA-------EQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hhhhcCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666665422 122224688999988885 34455665666666666666666666666666
Q ss_pred HHHHHHHHHHHHh
Q psy7684 215 RLQRKRLLNQQLA 227 (332)
Q Consensus 215 RL~kKKaa~qQk~ 227 (332)
...+=.+.....+
T Consensus 252 ~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 252 QKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
No 20
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=61.34 E-value=1.2e+02 Score=33.09 Aligned_cols=110 Identities=18% Similarity=0.307 Sum_probs=62.9
Q ss_pred HhhccchhhhhhccCcchhhhHHHHHhhHHHHHHH----------HHHHHHHHHHHHhHHHhccCCCC------CCCCCc
Q psy7684 99 RALRGQVDQNKMNNISLSSDLESIRALFNEKEKEL----------CMAVAKVEELTHQLEDLKRGRTH------QPSHPH 162 (332)
Q Consensus 99 RalRGQVeq~rl~N~~L~~Eieqm~~LF~eKqkEL----------~~AvskVeeLt~QLE~LR~~r~~------~~~~~~ 162 (332)
|.+++.+.+.|..|--|-..+ ..|...+|++- ..-...--.|..||.+.|+.+.. .+...
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl---~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~- 531 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKL---QNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQ- 531 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccc-
Confidence 667777777776666554433 33333333333 22222223467788888877652 11000
Q ss_pred chHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHHHHH
Q psy7684 163 LSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQER 215 (332)
Q Consensus 163 aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELreR 215 (332)
+..... --.| ++|.|. .+--..+.+-|..|..+.+++..|+.-+.+||..
T Consensus 532 ~~~~r~-e~~e-~~r~r~-~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 532 AQATRQ-ECAE-SCRQRR-RQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred chhccc-hhHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100000 1112 345555 3444778888999999999999999999988874
No 21
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.37 E-value=1.7e+02 Score=28.34 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHhhhcHH
Q psy7684 163 LSAELENLRRELMYHNKLSEQ 183 (332)
Q Consensus 163 aa~EL~kL~kEL~~rnkLn~~ 183 (332)
...|+.+|..++..--++.-|
T Consensus 274 t~~Ev~~Lk~~~~~Le~~~gw 294 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEKLTGW 294 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHCc
Confidence 567999999988777666555
No 22
>PRK00295 hypothetical protein; Provisional
Probab=60.07 E-value=12 Score=29.17 Aligned_cols=45 Identities=24% Similarity=0.196 Sum_probs=31.9
Q ss_pred hhhhhhhcccCc---ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7684 18 TLKAADLLTEGV---ELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLR 62 (332)
Q Consensus 18 ~~k~~~~l~~g~---elTLsELqemAtRQQQQIeaQqQlL~AKEqRLr 62 (332)
++.-++.||..+ +-|+.+|.+.-++||++|+.....+..=..|++
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677666 889999999999999999876654444334443
No 23
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=60.06 E-value=45 Score=33.39 Aligned_cols=50 Identities=28% Similarity=0.423 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHHHH
Q psy7684 164 SAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQE 214 (332)
Q Consensus 164 a~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELre 214 (332)
+.||++...|+.=|-.-..+ +++|..-+.++.|=..|+.-||=||.=|+.
T Consensus 307 seeLe~vK~emeerg~~mtD-~sPlv~IKqAl~kLk~EI~qMdvrIGVleh 356 (359)
T PF10498_consen 307 SEELEQVKQEMEERGSSMTD-GSPLVKIKQALTKLKQEIKQMDVRIGVLEH 356 (359)
T ss_pred HHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHHHHHHhhhhhheehh
Confidence 56777777777766443333 479999999999999999999999986654
No 24
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.29 E-value=8.1 Score=29.79 Aligned_cols=47 Identities=32% Similarity=0.354 Sum_probs=33.4
Q ss_pred hhhhhhcccCc---ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy7684 19 LKAADLLTEGV---ELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLK 65 (332)
Q Consensus 19 ~k~~~~l~~g~---elTLsELqemAtRQQQQIeaQqQlL~AKEqRLr~Lk 65 (332)
+.-++.|+..+ +-|+.+|.+.-++||++|+..+..+..=..|++-+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566555 789999999999999999998888777777766663
No 25
>PRK11519 tyrosine kinase; Provisional
Probab=58.50 E-value=2.6e+02 Score=29.93 Aligned_cols=108 Identities=18% Similarity=0.273 Sum_probs=57.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhccchhhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCC
Q psy7684 78 HERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQ 157 (332)
Q Consensus 78 ~ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~ 157 (332)
.++|..+|.+++.=|.+|...|.--|-++ +..|.+.....+.+-+.++... ..++.+|... ..
T Consensus 273 ~~ql~~l~~~L~~aE~~l~~fr~~~~~vd--------~~~ea~~~l~~~~~l~~ql~~l-------~~~~~~l~~~--y~ 335 (719)
T PRK11519 273 AQQLPEVRSRLDVAENKLNAFRQDKDSVD--------LPLEAKAVLDSMVNIDAQLNEL-------TFKEAEISKL--YT 335 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCC--------chHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH--hc
Confidence 34588889999999999998888666554 2344443333333334444333 3333334332 33
Q ss_pred CCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHHHHHHH
Q psy7684 158 PSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQ 217 (332)
Q Consensus 158 ~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELreRL~ 217 (332)
+.+| ....|.. +-+.|.++.+.++.+-.++...++.+.+|..-..
T Consensus 336 ~~hP-~v~~l~~--------------~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~ 380 (719)
T PRK11519 336 KEHP-AYRTLLE--------------KRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVE 380 (719)
T ss_pred ccCc-HHHHHHH--------------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5555 4443321 1234555555555555555555555555554433
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=57.37 E-value=2.8e+02 Score=29.90 Aligned_cols=195 Identities=22% Similarity=0.251 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhhHHHHHHHHHHHHhhccchhhhhhc
Q psy7684 32 TLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMN 111 (332)
Q Consensus 32 TLsELqemAtRQQQQIeaQqQlL~AKEqRLr~Lk~qe~r~~q~a~e~ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~ 111 (332)
.+..|..=..-+..-...-..+...+|+--.=|+ +.-+....-....-.+..+..++. ++-...||++..++..++..
T Consensus 228 di~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk-~rLk~~~~~~~~~~~~~~~~~~e~-e~LkeqLr~~qe~lqaSqq~ 305 (546)
T PF07888_consen 228 DIKTLTQKEKEQEKELDKLKELKAELEQLEAELK-QRLKETVVQLKQEETQAQQLQQEN-EALKEQLRSAQEQLQASQQE 305 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_pred cCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHH----HhccCCCC---------CCCCCcchHHHHHHHHHHHHHh
Q psy7684 112 NISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLE----DLKRGRTH---------QPSHPHLSAELENLRRELMYHN 178 (332)
Q Consensus 112 N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE----~LR~~r~~---------~~~~~~aa~EL~kL~kEL~~rn 178 (332)
...|..||..+.+.=..-..||-.|...+++|+-+|. +||.++.. +..-. --.++.+|.+|++-.+
T Consensus 306 ~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~-~k~~ie~L~~el~~~e 384 (546)
T PF07888_consen 306 AELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEA-DKDEIEKLSRELQMLE 384 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Q ss_pred hhcHH---HhHHHHHhHHHhhhhh-hhHHhHHHhHHHHHH--HHHHHHHHHHHHhhh
Q psy7684 179 KLSEQ---QNVRLHQQRETLTKKQ-AEVNSVDLRISELQE--RLQRKRLLNQQLASQ 229 (332)
Q Consensus 179 kLn~~---Qs~rL~QQRe~L~kRn-~Eva~mDrRI~ELre--RL~kKKaa~qQk~~~ 229 (332)
+.-++ +..+|.-+=.-.+-.+ --+..-.|.|.||+. |+-.|--...+-++|
T Consensus 385 ~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQ 441 (546)
T PF07888_consen 385 EHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQ 441 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 27
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=57.18 E-value=2.7e+02 Score=29.79 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=24.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhccchh
Q psy7684 78 HERLRRLRDRVEQQELKLRKLRALRGQVD 106 (332)
Q Consensus 78 ~ekLrrLRe~~e~QEaKLrklRalRGQVe 106 (332)
.++|..++.+++..|.+|...|.-.|-+|
T Consensus 273 ~~qL~~l~~~L~~aE~~l~~fr~~~~~~d 301 (726)
T PRK09841 273 QRQLPEVRSELDQAEEKLNVYRQQRDSVD 301 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34588999999999999999998766665
No 28
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=56.49 E-value=1.1e+02 Score=27.93 Aligned_cols=94 Identities=24% Similarity=0.341 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhH----------
Q psy7684 133 LCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEV---------- 202 (332)
Q Consensus 133 L~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Ev---------- 202 (332)
|..|..+|++|..+|...-+.+..--..-+-..++++=.+.|..-+..-.+.-.++.+.|+.|-.+-..+
T Consensus 64 L~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~ 143 (201)
T PF13851_consen 64 LKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGL 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777776665554321111112345566666666677777888888888888888776544
Q ss_pred --HhHHHhHHHHHHHHHHHHHHHHHH
Q psy7684 203 --NSVDLRISELQERLQRKRLLNQQL 226 (332)
Q Consensus 203 --a~mDrRI~ELreRL~kKKaa~qQk 226 (332)
-.++++|..|.+.|-+|-|.+...
T Consensus 144 kn~lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 144 KNLLLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246788888888888888777655
No 29
>PRK09039 hypothetical protein; Validated
Probab=56.23 E-value=2.1e+02 Score=28.21 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHhHHHHHHHhhhhHHHHHHHHHHHHhhccchhhhhhccCcchhhhHHHH
Q psy7684 45 AQIDSQRQLIAAKEQRLRFLKQH-EARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIR 123 (332)
Q Consensus 45 QQIeaQqQlL~AKEqRLr~Lk~q-e~r~~q~a~e~ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~N~~L~~Eieqm~ 123 (332)
++|+.+..-|..-+.+..-|-.. +-.......-.+.+..|+...+ .+-.+-+.+.
T Consensus 46 ~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~------------------------~a~~~r~~Le 101 (343)
T PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS------------------------AAEAERSRLQ 101 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------------------------HHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHH
Q psy7684 124 ALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVN 203 (332)
Q Consensus 124 ~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva 203 (332)
+.+..+......+..++.+|...|.+++.- .+.+-..+.+|.+|+.-..+- -+.|+..=+...++. +
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~------~se~~~~V~~L~~qI~aLr~Q----la~le~~L~~ae~~~---~ 168 (343)
T PRK09039 102 ALLAELAGAGAAAEGRAGELAQELDSEKQV------SARALAQVELLNQQIAALRRQ----LAALEAALDASEKRD---R 168 (343)
T ss_pred HHHhhhhhhcchHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---H
Q ss_pred hHHHhHHHHHHHHHHHHHH-HHHHhh
Q psy7684 204 SVDLRISELQERLQRKRLL-NQQLAS 228 (332)
Q Consensus 204 ~mDrRI~ELreRL~kKKaa-~qQk~~ 228 (332)
..+.+|++|..+|....+. .+.++.
T Consensus 169 ~~~~~i~~L~~~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 169 ESQAKIADLGRRLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 30
>PRK02119 hypothetical protein; Provisional
Probab=55.79 E-value=14 Score=29.18 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=32.8
Q ss_pred hhhhhhhcccCc---ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy7684 18 TLKAADLLTEGV---ELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRF 63 (332)
Q Consensus 18 ~~k~~~~l~~g~---elTLsELqemAtRQQQQIeaQqQlL~AKEqRLr~ 63 (332)
++.-++.||..+ +-|+.+|.+.-++||++|+..+..+..=-+|++-
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666 8899999999999999998766555444444433
No 31
>PRK02793 phi X174 lysis protein; Provisional
Probab=55.50 E-value=16 Score=28.74 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=32.5
Q ss_pred hhhhhhhhcccCc---ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy7684 17 STLKAADLLTEGV---ELTLGELEDMAVRQQAQIDSQRQLIAAKEQRL 61 (332)
Q Consensus 17 ~~~k~~~~l~~g~---elTLsELqemAtRQQQQIeaQqQlL~AKEqRL 61 (332)
.++.-+..||..+ +-|+.+|.+.-++||++|+..+..+..=-.|+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777776 88999999999999999987664443333333
No 32
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=54.10 E-value=3.1e+02 Score=29.52 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=14.0
Q ss_pred hhHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q psy7684 200 AEVNSVDLRISELQERLQRKRLLNQQLAS 228 (332)
Q Consensus 200 ~Eva~mDrRI~ELreRL~kKKaa~qQk~~ 228 (332)
.++..++.++.+|...+...+........
T Consensus 427 ~~~~~l~~~~~~l~~~~~~~~~~l~~l~~ 455 (1164)
T TIGR02169 427 AAIAGIEAKINELEEEKEDKALEIKKQEW 455 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554444443333
No 33
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=54.06 E-value=2.3e+02 Score=27.92 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=12.5
Q ss_pred hhcccCc-ccchhhHHHHHHHH
Q psy7684 23 DLLTEGV-ELTLGELEDMAVRQ 43 (332)
Q Consensus 23 ~~l~~g~-elTLsELqemAtRQ 43 (332)
+++..|. .+-+-||-.-+++.
T Consensus 53 ~~v~A~~~~iP~LElY~~sC~E 74 (312)
T smart00787 53 QYVVAGYCTVPLLELYQFSCKE 74 (312)
T ss_pred HHHHHhcCCCcHHHHHHHHHHH
Confidence 4444443 56677777777764
No 34
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.42 E-value=1.4e+02 Score=25.85 Aligned_cols=76 Identities=26% Similarity=0.396 Sum_probs=60.3
Q ss_pred HHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHH--HhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHHHH
Q psy7684 137 VAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMY--HNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQE 214 (332)
Q Consensus 137 vskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~--rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELre 214 (332)
-.++++...+|-+.=.|.. .+ .+.|+++..+-.+= -|||.-=+.....-|++.|-+=-.+.+.++.||++|-.
T Consensus 13 ~~~~e~~~~ql~e~~a~~~---~~--~~~evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEa 87 (103)
T COG2960 13 PNRFEDIAAQLSEDAAGAA---QE--VRAEVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEA 87 (103)
T ss_pred HHHHHHHHHHHHHHccccc---hh--hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888776655531 22 57899988877653 47787778888889999999999999999999999999
Q ss_pred HHH
Q psy7684 215 RLQ 217 (332)
Q Consensus 215 RL~ 217 (332)
||.
T Consensus 88 rl~ 90 (103)
T COG2960 88 RLA 90 (103)
T ss_pred Hhc
Confidence 997
No 35
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=52.50 E-value=3.8e+02 Score=30.02 Aligned_cols=171 Identities=22% Similarity=0.333 Sum_probs=87.7
Q ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHhhhhHHHHHHHHHHHHhhccchhhh
Q psy7684 30 ELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEAR-HQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQN 108 (332)
Q Consensus 30 elTLsELqemAtRQQQQIeaQqQlL~AKEqRLr~Lk~qe~r-~~q~a~e~ekLrrLRe~~e~QEaKLrklRalRGQVeq~ 108 (332)
.=.+++|+.+.+.++|.-+.=+.-|..|+-++.+=+.+... +..-..+++...++..+...=|..|+.|-..
T Consensus 337 ~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~ea------- 409 (739)
T PF07111_consen 337 RGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEA------- 409 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 34567888776666555555555557787777665443211 2223334444444545554444444433221
Q ss_pred hhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHH-HhccCCC-----------------CCCC-CC---cchHH
Q psy7684 109 KMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLE-DLKRGRT-----------------HQPS-HP---HLSAE 166 (332)
Q Consensus 109 rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE-~LR~~r~-----------------~~~~-~~---~aa~E 166 (332)
+.++-.-|.-.-..+..|++++-.|+.-|. +.|+-.. ..|+ +| .-..|
T Consensus 410 ----------v~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~E 479 (739)
T PF07111_consen 410 ----------VSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLE 479 (739)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHH
Confidence 122222233333334444444444443333 2221111 1221 22 13566
Q ss_pred HHHHHHHHHHHhhhcHH--HhHHHHHhH--HHhhhhhhhHHhHHHhHHHHHHHHHHHH
Q psy7684 167 LENLRRELMYHNKLSEQ--QNVRLHQQR--ETLTKKQAEVNSVDLRISELQERLQRKR 220 (332)
Q Consensus 167 L~kL~kEL~~rnkLn~~--Qs~rL~QQR--e~L~kRn~Eva~mDrRI~ELreRL~kKK 220 (332)
|.-|+.| |+||..+ .|++|-+|+ ..-.+--.|...+-....+|...|..+.
T Consensus 480 LqqLReE---RdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~q 534 (739)
T PF07111_consen 480 LQQLREE---RDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQ 534 (739)
T ss_pred HHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667665 7777765 677888777 5555666666667777777777766665
No 36
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=52.21 E-value=1.9e+02 Score=26.36 Aligned_cols=109 Identities=23% Similarity=0.370 Sum_probs=71.6
Q ss_pred ccchhhhhhccCcc-----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHH
Q psy7684 102 RGQVDQNKMNNISL-----SSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMY 176 (332)
Q Consensus 102 RGQVeq~rl~N~~L-----~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~ 176 (332)
-|-|+.-|+-++|+ +.+.-.+..-+..-++++.....++++|...|++++.+|.....-...-.+|+.|.+
T Consensus 42 DglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~---- 117 (188)
T PF03962_consen 42 DGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKK---- 117 (188)
T ss_pred cccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH----
Confidence 37788888888888 688888899999999999999999999999999999988422100111222222222
Q ss_pred HhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy7684 177 HNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLA 227 (332)
Q Consensus 177 rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa~qQk~ 227 (332)
+...|..+=+.+..-+++ +|.++++-+...+.++..-+
T Consensus 118 -------~~~~l~~el~~~~~~Dp~------~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 118 -------ELKELKKELEKYSENDPE------KIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred -------HHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHH
Confidence 222333332333333443 57777777777776666554
No 37
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=52.18 E-value=1.8e+02 Score=26.37 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=64.1
Q ss_pred ccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCC-----CCCCCCCcchHHHHHHHHHHHHHhhhcHHHh
Q psy7684 111 NNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGR-----THQPSHPHLSAELENLRRELMYHNKLSEQQN 185 (332)
Q Consensus 111 ~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r-----~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs 185 (332)
-+..|-++|...+.=+.+-+.++..+...|+.....|..-...= +++|-+...-.=+++++-.+.-+-..-+.+.
T Consensus 16 ~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~ 95 (158)
T PF09486_consen 16 RERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAEL 95 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555556666666666666666665554332210 1122222233445666777777777777666
Q ss_pred HHHHHhHHHhhhhhhhHHhHHHhHHHHHHHHHH
Q psy7684 186 VRLHQQRETLTKKQAEVNSVDLRISELQERLQR 218 (332)
Q Consensus 186 ~rL~QQRe~L~kRn~Eva~mDrRI~ELreRL~k 218 (332)
..+ +..|..+..+++.+.+.|+-++-++-.
T Consensus 96 a~l---~~~l~~~~~~ia~~~raIarn~a~id~ 125 (158)
T PF09486_consen 96 AAL---RQALRAAEDEIAATRRAIARNDARIDV 125 (158)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 555 567888899999999999988877654
No 38
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=51.43 E-value=3.3e+02 Score=29.07 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=6.3
Q ss_pred hHHhHHHhHHHHHHHH
Q psy7684 201 EVNSVDLRISELQERL 216 (332)
Q Consensus 201 Eva~mDrRI~ELreRL 216 (332)
++..+..++.+++..+
T Consensus 902 ~~~~~~~~~~~l~~~l 917 (1179)
T TIGR02168 902 ELRELESKRSELRREL 917 (1179)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444443333
No 39
>PRK00736 hypothetical protein; Provisional
Probab=50.97 E-value=20 Score=27.85 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=27.3
Q ss_pred hhhhhcccCc---ccchhhHHHHHHHHHHhHHHHHHHHH
Q psy7684 20 KAADLLTEGV---ELTLGELEDMAVRQQAQIDSQRQLIA 55 (332)
Q Consensus 20 k~~~~l~~g~---elTLsELqemAtRQQQQIeaQqQlL~ 55 (332)
.-++.||..+ +-|+.+|.+.-++||++|+.-...+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~ 43 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLD 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666 88999999999999999987654433
No 40
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=49.58 E-value=46 Score=29.69 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHhhhcHHHhHHHHHhHHH--hhhhhhhHHhHHHhHHHHHHHHHHHH
Q psy7684 164 SAELENLRRELMYHNKLSEQQNVRLHQQRET--LTKKQAEVNSVDLRISELQERLQRKR 220 (332)
Q Consensus 164 a~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~--L~kRn~Eva~mDrRI~ELreRL~kKK 220 (332)
..=+++|..||.... ..+..-|+. |+....+.+.+|+||.+|..+|..-+
T Consensus 33 ~~G~~~L~~El~~L~-------~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~A~ 84 (160)
T PRK06342 33 EAGLKALEDQLAQAR-------AAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRTAQ 84 (160)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHccCE
Confidence 345788888887764 234444322 33355678889999999999987644
No 41
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=45.83 E-value=34 Score=31.87 Aligned_cols=47 Identities=26% Similarity=0.384 Sum_probs=31.9
Q ss_pred HHHhhhhHHHHHHHHHHHHhhccchhhhh-----------hccCcchhhhHHHHHhhH
Q psy7684 81 LRRLRDRVEQQELKLRKLRALRGQVDQNK-----------MNNISLSSDLESIRALFN 127 (332)
Q Consensus 81 LrrLRe~~e~QEaKLrklRalRGQVeq~r-----------l~N~~L~~Eieqm~~LF~ 127 (332)
|..|-++......|+..+|.|++-++.-. ..||.|..||+.||-|+.
T Consensus 151 L~~l~~~r~~~~~rl~~lr~L~~lLepf~~~~~~IQ~NLvtr~g~l~~El~rmR~Lla 208 (213)
T PF13093_consen 151 LIELSEQRQYLQQRLEYLRRLRSLLEPFDSPQENIQPNLVTRDGELEAELERMRMLLA 208 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccccCCCCchHHHHHHHHHHHHH
Confidence 44455555556666666777766664211 568999999999998864
No 42
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=45.49 E-value=2.7e+02 Score=26.30 Aligned_cols=145 Identities=18% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhccchhhhhhccCc-----------chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy7684 78 HERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNIS-----------LSSDLESIRALFNEKEKELCMAVAKVEELTHQ 146 (332)
Q Consensus 78 ~ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~N~~-----------L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~Q 146 (332)
...+..+..++...++.+..+.+.....+........ +.++.+.+......-+.++....++++.+..+
T Consensus 80 ~~~l~~l~~~~~~l~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 159 (423)
T TIGR01843 80 EADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQLEAE 159 (423)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHH---HhHHHHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHHH
Q psy7684 147 LEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQ---QNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLN 223 (332)
Q Consensus 147 LE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~---Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa~ 223 (332)
++.+... -..+..++....+++....+|-.. -...+...+..+..-..++......|.+++..+...++..
T Consensus 160 i~~~~~~------l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 160 LAGLQAQ------LQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhh
Q psy7684 224 QQLAS 228 (332)
Q Consensus 224 qQk~~ 228 (332)
.+...
T Consensus 234 ~~~~~ 238 (423)
T TIGR01843 234 QQIEQ 238 (423)
T ss_pred HHHHH
No 43
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=45.31 E-value=86 Score=27.11 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=19.4
Q ss_pred hhhhhHHhHHHhHHHHHHHHHHHHH
Q psy7684 197 KKQAEVNSVDLRISELQERLQRKRL 221 (332)
Q Consensus 197 kRn~Eva~mDrRI~ELreRL~kKKa 221 (332)
-...+.+.+|+||.+|.++|.+-+.
T Consensus 46 aak~~~~~~e~ri~~L~~~L~~a~i 70 (151)
T TIGR01462 46 AAKEEQGFNEGRIAELEDLLANAQV 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4455677899999999999976554
No 44
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=45.08 E-value=3.7e+02 Score=27.76 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=19.0
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHH
Q psy7684 202 VNSVDLRISELQERLQRKRLLNQQ 225 (332)
Q Consensus 202 va~mDrRI~ELreRL~kKKaa~qQ 225 (332)
-..+|.||..|.+.|-.|-.++--
T Consensus 387 ~~elE~rl~~lt~~Li~KQ~~lE~ 410 (511)
T PF09787_consen 387 WNELESRLTQLTESLIQKQTQLES 410 (511)
T ss_pred cHhHHHHHhhccHHHHHHHHHHHH
Confidence 357999999999999988655543
No 45
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=44.69 E-value=1.6e+02 Score=28.33 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhH
Q psy7684 130 EKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRI 209 (332)
Q Consensus 130 qkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI 209 (332)
+.++..+..+++++...|.+.|...+.-.+.. .+.....+-.+| +.++.+- ..+|..-+.......++|..+..+|
T Consensus 176 ~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~-~~~~~~~~i~~L--~~~l~~~-~~~l~~l~~~~~~~~P~v~~l~~~i 251 (362)
T TIGR01010 176 ENEVKEAEQRLNATKAELLKYQIKNKVFDPKA-QSSAQLSLISTL--EGELIRV-QAQLAQLRSITPEQNPQVPSLQARI 251 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcChHH-HHHHHHHHHHHH--HHHHHHH-HHHHHHHHhhCCCCCCchHHHHHHH
Confidence 45677788888888888888888765433222 111111111111 1111111 1334444555666689999999999
Q ss_pred HHHHHHHHHHH
Q psy7684 210 SELQERLQRKR 220 (332)
Q Consensus 210 ~ELreRL~kKK 220 (332)
+.|+..|.+-.
T Consensus 252 ~~l~~~i~~e~ 262 (362)
T TIGR01010 252 KSLRKQIDEQR 262 (362)
T ss_pred HHHHHHHHHHH
Confidence 99998887643
No 46
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=44.59 E-value=2.3e+02 Score=25.30 Aligned_cols=106 Identities=22% Similarity=0.274 Sum_probs=43.3
Q ss_pred chhhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHH
Q psy7684 104 QVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQ 183 (332)
Q Consensus 104 QVeq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~ 183 (332)
....-...+|-+..-|-.++.-+.++++++..-..++.+|+..+..|+. ++..|..+|.-+++.++.
T Consensus 82 ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~-------------~~~~l~~~l~ek~k~~e~ 148 (194)
T PF08614_consen 82 ELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEE-------------KIKDLEEELKEKNKANEI 148 (194)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666667777777777767777777766666554 456677777777777776
Q ss_pred HhHHHHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHH
Q psy7684 184 QNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLL 222 (332)
Q Consensus 184 Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa 222 (332)
-++-+..=.-.++.-...+..+..-=.+|-+|+=++|+.
T Consensus 149 l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 149 LQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555443333333333333333344566777666654
No 47
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=44.18 E-value=4.4e+02 Score=28.42 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=7.5
Q ss_pred hhhhHHhHHHhHHHHHHHH
Q psy7684 198 KQAEVNSVDLRISELQERL 216 (332)
Q Consensus 198 Rn~Eva~mDrRI~ELreRL 216 (332)
-..++..+..++..++.++
T Consensus 474 ~~~~l~~l~~~l~~l~~~~ 492 (1164)
T TIGR02169 474 LKEEYDRVEKELSKLQREL 492 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 48
>PRK04325 hypothetical protein; Provisional
Probab=43.37 E-value=31 Score=27.25 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=27.9
Q ss_pred hhhhhhhcccCc---ccchhhHHHHHHHHHHhHHHHHHHH
Q psy7684 18 TLKAADLLTEGV---ELTLGELEDMAVRQQAQIDSQRQLI 54 (332)
Q Consensus 18 ~~k~~~~l~~g~---elTLsELqemAtRQQQQIeaQqQlL 54 (332)
++.-++.||..+ +-|+.+|.+.-++||++|+.-...+
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777666 8899999999999999997655433
No 49
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=41.31 E-value=3.5e+02 Score=26.39 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=22.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhccchh
Q psy7684 79 ERLRRLRDRVEQQELKLRKLRALRGQVD 106 (332)
Q Consensus 79 ekLrrLRe~~e~QEaKLrklRalRGQVe 106 (332)
+.+..++++++.-|.+|...|.--|=++
T Consensus 178 ~ql~~~~~~l~~ae~~l~~fr~~~~i~~ 205 (444)
T TIGR03017 178 QQIAALREDLARAQSKLSAYQQEKGIVS 205 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 3488888999999999999988777664
No 50
>KOG1962|consensus
Probab=40.02 E-value=84 Score=29.96 Aligned_cols=41 Identities=37% Similarity=0.454 Sum_probs=35.1
Q ss_pred cCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhcc
Q psy7684 112 NISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKR 152 (332)
Q Consensus 112 N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~ 152 (332)
|.++.+|++-...=..+|+.+|.-|-.+|+.|..|.|++-.
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~ 193 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD 193 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 35567777888888899999999999999999999998743
No 51
>KOG0161|consensus
Probab=39.71 E-value=8.4e+02 Score=30.33 Aligned_cols=88 Identities=32% Similarity=0.382 Sum_probs=49.8
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCC-CCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHh
Q psy7684 117 SDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQP-SHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETL 195 (332)
Q Consensus 117 ~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~-~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L 195 (332)
.+++...++..+.++...--.++..+|...||..|..+--.- .-.--+.|++.|..+| +++......|=+.=
T Consensus 1083 ~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L-------ee~~~~t~~q~e~~ 1155 (1930)
T KOG0161|consen 1083 SKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL-------EEQGGTTAAQLELN 1155 (1930)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHH
Confidence 344555556666666666666677777777777776431000 0000233344443333 34456666666677
Q ss_pred hhhhhhHHhHHHhHHH
Q psy7684 196 TKKQAEVNSVDLRISE 211 (332)
Q Consensus 196 ~kRn~Eva~mDrRI~E 211 (332)
.+|..|+..|++.+.+
T Consensus 1156 ~k~e~e~~~l~~~lee 1171 (1930)
T KOG0161|consen 1156 KKREAEVQKLRRDLEE 1171 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888888877654
No 52
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.58 E-value=3.8e+02 Score=26.38 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=41.9
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCC------CCCCCCcchHHHHHHHHHHHHHhhhcHHH
Q psy7684 116 SSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRT------HQPSHPHLSAELENLRRELMYHNKLSEQQ 184 (332)
Q Consensus 116 ~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~------~~~~~~~aa~EL~kL~kEL~~rnkLn~~Q 184 (332)
..||+.++....+++.+|..-.+++++.+.+..+++.--. ..-.+- ...|+.+|.+.+..--++.-|.
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~-t~~Ei~~Lk~~~~~Le~l~g~~ 290 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGF-TFKEIEKLKEQLKLLQSLTGWK 290 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCe
Confidence 4566666666777777776666666666655555543210 011222 5789999998888777766654
No 53
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=36.71 E-value=4.4e+02 Score=26.21 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhhcHHH
Q psy7684 165 AELENLRRELMYHNKLSEQQ 184 (332)
Q Consensus 165 ~EL~kL~kEL~~rnkLn~~Q 184 (332)
..-+++.+.+.++.+-.+++
T Consensus 80 ~~~~r~~~~~~i~~~~~~q~ 99 (332)
T TIGR01541 80 KQRERLDARLQIDRTFRKQQ 99 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666655544
No 54
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=36.56 E-value=1.4e+02 Score=26.53 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHhHHHHHhHHH--------hhhhhhhHHhHHHhHHHHHHHHHHHHH
Q psy7684 165 AELENLRRELMYHNKLSEQQNVRLHQQRET--------LTKKQAEVNSVDLRISELQERLQRKRL 221 (332)
Q Consensus 165 ~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~--------L~kRn~Eva~mDrRI~ELreRL~kKKa 221 (332)
.=+++|.+||..+..--.+=...+..-|+. -.-...+.+.+|+||.+|..||..-+.
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A~i 75 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTGPT 75 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhCEE
Confidence 346777778776643111111222111111 123345678899999999999985543
No 55
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=36.19 E-value=2.7e+02 Score=23.58 Aligned_cols=25 Identities=28% Similarity=0.528 Sum_probs=14.2
Q ss_pred HHHHHhHHHhhhhhhhHHhHHHhHHHHH
Q psy7684 186 VRLHQQRETLTKKQAEVNSVDLRISELQ 213 (332)
Q Consensus 186 ~rL~QQRe~L~kRn~Eva~mDrRI~ELr 213 (332)
.....++..|. .|+..+.+||.+|.
T Consensus 94 ~sw~~qk~~le---~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 94 ASWEEQKEQLE---KELSELEQRIEDLN 118 (132)
T ss_pred HhHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 33444555554 35666677777765
No 56
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=35.89 E-value=3.9e+02 Score=25.37 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=36.2
Q ss_pred hhhhHHHHHHHHHHHHhhccchhhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhc
Q psy7684 84 LRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLK 151 (332)
Q Consensus 84 LRe~~e~QEaKLrklRalRGQVeq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR 151 (332)
|||--...-.|+.-|=+||++.--.+-..-+....+..+...++.|+.||.+.-..+.......+-||
T Consensus 19 Lke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLr 86 (202)
T PF06818_consen 19 LKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLR 86 (202)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhh
Confidence 44444444555666666666655555444555555666666666666666555554444443333333
No 57
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=35.89 E-value=3.3e+02 Score=24.56 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=15.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhHHHh
Q psy7684 122 IRALFNEKEKELCMAVAKVEELTHQLEDL 150 (332)
Q Consensus 122 m~~LF~eKqkEL~~AvskVeeLt~QLE~L 150 (332)
++.-|..+..++.......+.|...++++
T Consensus 18 ~~~~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 18 VNNRLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555555555555554
No 58
>PRK11637 AmiB activator; Provisional
Probab=35.61 E-value=4.6e+02 Score=26.09 Aligned_cols=168 Identities=20% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhhHHHHHHHHHHHHhhccchhhhhhccCcchh
Q psy7684 38 DMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSS 117 (332)
Q Consensus 38 emAtRQQQQIeaQqQlL~AKEqRLr~Lk~qe~r~~q~a~e~ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~N~~L~~ 117 (332)
..++.-+++++...+-+...++.+.-++. +...-...+..+-..+..=+.++..+..
T Consensus 40 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~------~~~~~~~~l~~l~~qi~~~~~~i~~~~~----------------- 96 (428)
T PRK11637 40 AHASDNRDQLKSIQQDIAAKEKSVRQQQQ------QRASLLAQLKKQEEAISQASRKLRETQN----------------- 96 (428)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCc-----chHHHHHHHHHHHHHhhhcHHHhHHHHHhH
Q psy7684 118 DLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPH-----LSAELENLRRELMYHNKLSEQQNVRLHQQR 192 (332)
Q Consensus 118 Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~-----aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQR 192 (332)
+|+.+..-+...+.++..+-.+++++...|..+-+.--.....+. ++.....+.+-+.|-+.++.....-+.+-.
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l~~i~~~d~~~l~~l~ 176 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLNQARQETIAELK 176 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q psy7684 193 ETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLAS 228 (332)
Q Consensus 193 e~L~kRn~Eva~mDrRI~ELreRL~kKKaa~qQk~~ 228 (332)
....+-...-+.++...++|..-+...+.....++.
T Consensus 177 ~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~ 212 (428)
T PRK11637 177 QTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQ 212 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 59
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.25 E-value=4.2e+02 Score=29.27 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=24.2
Q ss_pred hhhhhHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q psy7684 197 KKQAEVNSVDLRISELQERLQRKRLLNQQLAS 228 (332)
Q Consensus 197 kRn~Eva~mDrRI~ELreRL~kKKaa~qQk~~ 228 (332)
..+-|+..+|+||..|+-.|..|+..--++++
T Consensus 471 ~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 471 RKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999888888755555444
No 60
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=35.24 E-value=1.1e+02 Score=30.21 Aligned_cols=81 Identities=25% Similarity=0.371 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHH---HHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhH
Q psy7684 129 KEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLR---RELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSV 205 (332)
Q Consensus 129 KqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~---kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~m 205 (332)
-++||.-+..+||.|-+|+.++-.+.... -..-||+|| +-||+-++|..+--+++.. |-..+
T Consensus 162 l~~eLqkr~~~v~~l~~q~~k~~~~qv~~-----in~qlErLRL~krrlQl~g~Ld~~~q~~~~a----------e~seL 226 (289)
T COG4985 162 LERELQKRLLEVETLRDQVDKMVEQQVRV-----INSQLERLRLEKRRLQLNGQLDDEFQQHYVA----------EKSEL 226 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhcccccHHHHHHHHH----------HHHHH
Confidence 46788889999999999999998875422 233467775 4588888887765555443 44455
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q psy7684 206 DLRISELQERLQRKRLLNQ 224 (332)
Q Consensus 206 DrRI~ELreRL~kKKaa~q 224 (332)
.+|.+.|.+-|.--++...
T Consensus 227 q~r~~~l~~~L~~L~~e~~ 245 (289)
T COG4985 227 QKRLAQLQTELDALRAELE 245 (289)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 6777788877776555543
No 61
>KOG0161|consensus
Probab=35.04 E-value=9.8e+02 Score=29.78 Aligned_cols=165 Identities=24% Similarity=0.250 Sum_probs=97.7
Q ss_pred cCcccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhHHHHHHHhhhhHHHHHHHHHHHHhhccch
Q psy7684 27 EGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQV-AAEHERLRRLRDRVEQQELKLRKLRALRGQV 105 (332)
Q Consensus 27 ~g~elTLsELqemAtRQQQQIeaQqQlL~AKEqRLr~Lk~qe~r~~q~-a~e~ekLrrLRe~~e~QEaKLrklRalRGQV 105 (332)
+-+.-++.|+.+.=-+.++.++.-+..+.++...-.-|...-.+=++. ..-.--+.+.|..+...+ ++++.+-+.+
T Consensus 1368 ~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le---~k~k~f~k~l 1444 (1930)
T KOG0161|consen 1368 EEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALE---KKQKRFEKLL 1444 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 333444556666655656666655555555555544442111110010 000111222233333333 3455666667
Q ss_pred hhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCC-----CCCCCcchHHHHHHHHHHHHHhhh
Q psy7684 106 DQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTH-----QPSHPHLSAELENLRRELMYHNKL 180 (332)
Q Consensus 106 eq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~-----~~~~~~aa~EL~kL~kEL~~rnkL 180 (332)
..-+-.-..+..|+|....-+..+..++......++++..+++.|++-..+ ..- ...-.|+.|-..||.--.|.
T Consensus 1445 ~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl-~~~~~e~~k~v~elek~~r~ 1523 (1930)
T KOG0161|consen 1445 AEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL-EEQKDEGGKRVHELEKEKRR 1523 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 777778888999999999999999999999999999999999999987531 000 11345566666666666666
Q ss_pred cHHHhHHHHHhHHHh
Q psy7684 181 SEQQNVRLHQQRETL 195 (332)
Q Consensus 181 n~~Qs~rL~QQRe~L 195 (332)
.+.+...|+.+=+.+
T Consensus 1524 le~e~~elQ~aLeEl 1538 (1930)
T KOG0161|consen 1524 LEQEKEELQAALEEL 1538 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665554433
No 62
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=34.18 E-value=7.7e+02 Score=28.29 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHh
Q psy7684 127 NEKEKELCMAVAKVEELTHQLEDL 150 (332)
Q Consensus 127 ~eKqkEL~~AvskVeeLt~QLE~L 150 (332)
..++.++..--+++.++++..+.+
T Consensus 362 ~~l~~~~~~Lt~~~~di~~ky~~~ 385 (1201)
T PF12128_consen 362 ENLQEQLDLLTSKHQDIESKYNKL 385 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 63
>KOG4674|consensus
Probab=33.94 E-value=7.4e+02 Score=30.65 Aligned_cols=120 Identities=21% Similarity=0.322 Sum_probs=87.7
Q ss_pred HHHHHHHHhhccchhhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCc----chHHH
Q psy7684 92 ELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPH----LSAEL 167 (332)
Q Consensus 92 EaKLrklRalRGQVeq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~----aa~EL 167 (332)
++.+-+++-|+-.++.-+..=.+|-.++....+=|..+.+++...-..++.--..-.+|..--- .+.++ -..|.
T Consensus 1239 ~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k--~~d~~~~~kL~~ei 1316 (1822)
T KOG4674|consen 1239 EANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYK--DSDKNDYEKLKSEI 1316 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHH
Confidence 5667777888888888888888888999999999999999999998888887777666665411 11111 24588
Q ss_pred HHHHHHHHHHhhhcHHHhHHHHHhH----HHhhhhhhhHHhHHHhHHHHH
Q psy7684 168 ENLRRELMYHNKLSEQQNVRLHQQR----ETLTKKQAEVNSVDLRISELQ 213 (332)
Q Consensus 168 ~kL~kEL~~rnkLn~~Qs~rL~QQR----e~L~kRn~Eva~mDrRI~ELr 213 (332)
.+|..||...-+++.+-..++..=+ .-++--+.+.+..-++|.+|.
T Consensus 1317 ~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~ 1366 (1822)
T KOG4674|consen 1317 SRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLE 1366 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888877 333333444444444444443
No 64
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.48 E-value=1.7e+02 Score=26.00 Aligned_cols=55 Identities=25% Similarity=0.281 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhHH----------------------HhHHHHHHHHH
Q psy7684 163 LSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVD----------------------LRISELQERLQ 217 (332)
Q Consensus 163 aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mD----------------------rRI~ELreRL~ 217 (332)
+-+||.+-|+.++-+-.=...+-.=...||-=+..|+.|.+..- +|+.||+++++
T Consensus 49 aDa~LN~AY~~ll~~l~~~~~~~aL~kaQRAWi~fRDadC~~~~~~~~ggs~~~~~~~~C~~d~T~~R~~eL~~~~~ 125 (127)
T COG3755 49 ADAELNKAYKALLKRLQDSPRTKALQKAQRAWIAFRDADCALIKSQLDGGSIAPMEVLSCLLDLTNQRTAELEELLQ 125 (127)
T ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhHhHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788888988876544444444456679999999999987665 78888888764
No 65
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=33.05 E-value=8.6e+02 Score=28.50 Aligned_cols=132 Identities=26% Similarity=0.238 Sum_probs=58.5
Q ss_pred cccCc-ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhhHHHHHHHHHHHHhhcc
Q psy7684 25 LTEGV-ELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRG 103 (332)
Q Consensus 25 l~~g~-elTLsELqemAtRQQQQIeaQqQlL~AKEqRLr~Lk~qe~r~~q~a~e~ekLrrLRe~~e~QEaKLrklRalRG 103 (332)
|...+ +++-.++.+|+.- -.+++.-+..+..-+.+..-|+.-... -....+. ....+...++.-+.
T Consensus 210 l~~~l~~l~~~~i~~l~e~-~~~~~~~~~~le~l~~~~~~l~~i~~~-------y~~y~~~-----~~~~~~~~~~~~~~ 276 (1353)
T TIGR02680 210 LTEALPPLDDDELTDVADA-LEQLDEYRDELERLEALERALRNFLQR-------YRRYART-----MLRRRATRLRSAQT 276 (1353)
T ss_pred HHHhCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-----HHHHHHHHHHHHHH
Confidence 33343 6777778888753 344555555555555555555432111 0001110 00111122222222
Q ss_pred chhhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHH
Q psy7684 104 QVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRREL 174 (332)
Q Consensus 104 QVeq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL 174 (332)
+.+.-+..-..+-.+++....-+.+-+.++...-.+.++++..+++|+... .-- ...||+.|+.++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~----a~~-~~~eL~el~~ql 342 (1353)
T TIGR02680 277 QYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSP----AYQ-DAEELERARADA 342 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH----HHH-HHHHHHHHHHHH
Confidence 222222222233344444444444444445555555555566666665431 111 356777776644
No 66
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=32.41 E-value=15 Score=38.88 Aligned_cols=39 Identities=36% Similarity=0.366 Sum_probs=0.0
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccC
Q psy7684 115 LSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRG 153 (332)
Q Consensus 115 L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~ 153 (332)
|..+++........-+.+...+-.++.+|..|+|+|.+.
T Consensus 486 L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~ 524 (713)
T PF05622_consen 486 LQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKS 524 (713)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555666666677788888888888876
No 67
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.19 E-value=8.4e+02 Score=28.15 Aligned_cols=36 Identities=6% Similarity=0.038 Sum_probs=18.4
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccC
Q psy7684 117 SDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRG 153 (332)
Q Consensus 117 ~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~ 153 (332)
.+++.+.+| ...--.+.-....+..+.++++.|..-
T Consensus 779 ~~~~~~esL-~~~v~~i~r~~~ei~~l~~qie~l~~~ 814 (1311)
T TIGR00606 779 PEEESAKVC-LTDVTIMERFQMELKDVERKIAQQAAK 814 (1311)
T ss_pred HhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445445443 222333334456666666776666553
No 68
>KOG0612|consensus
Probab=31.85 E-value=9.7e+02 Score=28.74 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=23.4
Q ss_pred hHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHHHH
Q psy7684 191 QRETLTKKQAEVNSVDLRISELQERLQRKRLLNQ 224 (332)
Q Consensus 191 QRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa~q 224 (332)
-|.....=.+++++++.+|..|.+.+..++..++
T Consensus 614 ~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~ 647 (1317)
T KOG0612|consen 614 ERRQRTEISEIIAELKEEISSLEETLKAGKKELL 647 (1317)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHH
Confidence 3333444467788888888888888877765544
No 69
>KOG4674|consensus
Probab=30.72 E-value=1.1e+03 Score=29.19 Aligned_cols=99 Identities=29% Similarity=0.317 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhccCCCC-CCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhH
Q psy7684 131 KELCMAVAKVEELTHQLEDLKRGRTH-QPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRI 209 (332)
Q Consensus 131 kEL~~AvskVeeLt~QLE~LR~~r~~-~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI 209 (332)
-||..|-.+++.|+--++.|+.-... .++......|+++|-+|.. +|...-..-.-++.....-.-+....+..||
T Consensus 731 ~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~---~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i 807 (1822)
T KOG4674|consen 731 QELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQE---SLQLLLDNLQTQKNELEESEMATKDKCESRI 807 (1822)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888776442 2233346777777765532 2222222222233333333344556788999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc
Q psy7684 210 SELQERLQRKRLLNQQLASQLNS 232 (332)
Q Consensus 210 ~ELreRL~kKKaa~qQk~~~~~~ 232 (332)
.+|..=|.+-|--++.+.+.++.
T Consensus 808 ~eL~~el~~lk~klq~~~~~~r~ 830 (1822)
T KOG4674|consen 808 KELERELQKLKKKLQEKSSDLRE 830 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888877778888765555
No 70
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=30.71 E-value=3e+02 Score=28.63 Aligned_cols=87 Identities=10% Similarity=0.081 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHH---hHHHHHhHHHhhhhhhhHHhH
Q psy7684 129 KEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQ---NVRLHQQRETLTKKQAEVNSV 205 (332)
Q Consensus 129 KqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Q---s~rL~QQRe~L~kRn~Eva~m 205 (332)
-+.|+..|..++.+....|-++|...+--+|...+..- +.+-++|..+= ...|.+-+..+.-.++.|..+
T Consensus 247 Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~-------~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l 319 (434)
T PRK15178 247 LENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAI-------YQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRL 319 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHH
Confidence 57889999999999999999999887643333212211 22223332221 223333344456678899999
Q ss_pred HHhHHHHHHHHHHHHHH
Q psy7684 206 DLRISELQERLQRKRLL 222 (332)
Q Consensus 206 DrRI~ELreRL~kKKaa 222 (332)
+.||+-|+..+.+-|+.
T Consensus 320 ~~rI~aLe~QIa~er~k 336 (434)
T PRK15178 320 SAKIKVLEKQIGEQRNR 336 (434)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998888766654
No 71
>KOG2402|consensus
Probab=30.69 E-value=1.3e+02 Score=32.11 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=63.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHh-HHHHHhHHHhhhhh---
Q psy7684 124 ALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQN-VRLHQQRETLTKKQ--- 199 (332)
Q Consensus 124 ~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs-~rL~QQRe~L~kRn--- 199 (332)
.+|..|..+|.-++.-+-.-..-=+.+..+.-.++-+++.+.|...|+++.++..-++..+. .+.+.|...|..+-
T Consensus 332 ~~i~~K~~~i~~a~~~~~sd~~v~~~v~~k~~~~~~p~N~ameK~~l~k~r~~A~~~~d~~~a~~~~~qi~elE~~a~~~ 411 (525)
T KOG2402|consen 332 DLISRKKLDIVKALNYRLSDKEVDQMVAEKFEASPRPRNVAMEKTGLRKERDLAQLLGDAKSAEEIQRQINELEARAEEL 411 (525)
T ss_pred HHHHHHHHHHHHHhcCccCcccHHHHHHhhhhcCcCcchHHHHHHhHHHHHHHHHhcccHhHHHHHHHHHHHHHHHHhhh
Confidence 35667877777776543221111122222223455566799999999999999988876655 45777888887776
Q ss_pred -hhHHhHHHhHHHHHHHHHHH
Q psy7684 200 -AEVNSVDLRISELQERLQRK 219 (332)
Q Consensus 200 -~Eva~mDrRI~ELreRL~kK 219 (332)
...++==.-|++|-.|.+++
T Consensus 412 ~~~~~s~i~~~~~lN~rNR~~ 432 (525)
T KOG2402|consen 412 DKARASPILKLAELNRRNRRR 432 (525)
T ss_pred ccccccccccccccchhHHHH
Confidence 22333334688999999888
No 72
>KOG0994|consensus
Probab=30.27 E-value=1.1e+03 Score=28.77 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=60.6
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHh----hhcHHHhHHHHHhHH
Q psy7684 118 DLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHN----KLSEQQNVRLHQQRE 193 (332)
Q Consensus 118 Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rn----kLn~~Qs~rL~QQRe 193 (332)
.|+.|..-.-.-|+-+..|..++.+|..-+|+|+...... +. +|.+.++..--...++ +.+..=-....---.
T Consensus 1599 ~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qn--s~-~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~ 1675 (1758)
T KOG0994|consen 1599 LLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQN--SA-EAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDR 1675 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555677778888889999999999998875522 21 2333333221111111 111111122233345
Q ss_pred HhhhhhhhHHhHHHhHHHHHHHHHHHHHHHH
Q psy7684 194 TLTKKQAEVNSVDLRISELQERLQRKRLLNQ 224 (332)
Q Consensus 194 ~L~kRn~Eva~mDrRI~ELreRL~kKKaa~q 224 (332)
.|.||-.+..+--+|+..||+|-.+--.+.+
T Consensus 1676 l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~ 1706 (1758)
T KOG0994|consen 1676 LLEKRMEGSQAARERAEQLRTEAEKLLGQAN 1706 (1758)
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888889999888665443333
No 73
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=30.03 E-value=3.2e+02 Score=22.63 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=44.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhccchhhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCC-C-
Q psy7684 79 ERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRT-H- 156 (332)
Q Consensus 79 ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~-~- 156 (332)
..+-+|+.....|+..+..- .-.|..|...+...+.++.+-++.=.....+.|+.-.++...=.+.- +
T Consensus 25 ~~i~~L~a~n~~q~~tI~qq----------~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d~Ca~ 94 (110)
T PF10828_consen 25 QRIDRLRAENKAQAQTIQQQ----------EDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTALKDDPCAN 94 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 44666666666666555433 23355666667777777766444333333455544444433322221 2
Q ss_pred CCCCCcchHHHHHHHH
Q psy7684 157 QPSHPHLSAELENLRR 172 (332)
Q Consensus 157 ~~~~~~aa~EL~kL~k 172 (332)
.+.|.+.+.+|.+||+
T Consensus 95 ~~~P~~V~d~L~~~~~ 110 (110)
T PF10828_consen 95 TAVPDAVIDSLRRLHK 110 (110)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 2223336778888874
No 74
>PRK12704 phosphodiesterase; Provisional
Probab=30.03 E-value=3.1e+02 Score=28.73 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=9.5
Q ss_pred HHHhHHHhhhhhhhHHhHHHhHH
Q psy7684 188 LHQQRETLTKKQAEVNSVDLRIS 210 (332)
Q Consensus 188 L~QQRe~L~kRn~Eva~mDrRI~ 210 (332)
|.+..+.|++|..++..-++.|.
T Consensus 91 L~~Ree~Le~r~e~Lekke~eL~ 113 (520)
T PRK12704 91 LLQKEENLDRKLELLEKREEELE 113 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333333
No 75
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.24 E-value=5.3e+02 Score=24.91 Aligned_cols=152 Identities=22% Similarity=0.330 Sum_probs=73.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhhHHHHHHH------HHHHHhhccchhhhhh
Q psy7684 37 EDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELK------LRKLRALRGQVDQNKM 110 (332)
Q Consensus 37 qemAtRQQQQIeaQqQlL~AKEqRLr~Lk~qe~r~~q~a~e~ekLrrLRe~~e~QEaK------LrklRalRGQVeq~rl 110 (332)
+.-=...+-.+++--.-+++++..+.-++.|-.+. ...++.+|++...=|-| .+.+++|-+..+.-+-
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~------e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~ 103 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQL------ESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKE 103 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 33334455566666666777777777776543221 12244444443333322 2334444444433333
Q ss_pred ccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHH
Q psy7684 111 NNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQ 190 (332)
Q Consensus 111 ~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~Q 190 (332)
.-.+|..||..+.......+.+......++..+...+.+++.. .-.|+..++++
T Consensus 104 r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~---------~e~e~~~i~e~----------------- 157 (239)
T COG1579 104 RINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR---------LEEEVAEIREE----------------- 157 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-----------------
Confidence 3334444444444444444444444444444444444444332 22223332222
Q ss_pred hHHHhhhhhhhHHhHHHhHHHHHHHHHHHH
Q psy7684 191 QRETLTKKQAEVNSVDLRISELQERLQRKR 220 (332)
Q Consensus 191 QRe~L~kRn~Eva~mDrRI~ELreRL~kKK 220 (332)
......+|..=+..||..+...=+|+.+.+
T Consensus 158 ~~~~~~~~~~L~~~l~~ell~~yeri~~~~ 187 (239)
T COG1579 158 GQELSSKREELKEKLDPELLSEYERIRKNK 187 (239)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Confidence 222334444446788888888888887654
No 76
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=28.90 E-value=8.1e+02 Score=26.95 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHHhhhhHHHHHHHHHHHHhhccch
Q psy7684 63 FLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQV 105 (332)
Q Consensus 63 ~Lk~qe~r~~q~a~e~ekLrrLRe~~e~QEaKLrklRalRGQV 105 (332)
|+..++. ....=..|+..|....+.|-.+|..++.-+..+
T Consensus 552 Yi~~~~~---ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 552 YIEKQDL---AREEIQRRVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6644432 333345567777777777777777777654444
No 77
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=28.24 E-value=1.5e+02 Score=22.64 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=24.1
Q ss_pred cHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHH
Q psy7684 181 SEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRL 221 (332)
Q Consensus 181 n~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKa 221 (332)
+.+....|++--.+|+ ..|++-|.|||.|-..||.
T Consensus 6 k~ls~~eL~~rl~~LD------~~ME~Eieelr~RY~~KRq 40 (49)
T PF11629_consen 6 KFLSYEELQQRLASLD------PEMEQEIEELRQRYQAKRQ 40 (49)
T ss_dssp GGS-HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHhCC------HHHHHHHHHHHHHHHHhhc
Confidence 3444444555445554 3699999999999999983
No 78
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.09 E-value=1e+02 Score=24.51 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=22.3
Q ss_pred hHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q psy7684 201 EVNSVDLRISELQERLQRKRLLNQQLAS 228 (332)
Q Consensus 201 Eva~mDrRI~ELreRL~kKKaa~qQk~~ 228 (332)
-+...+..|.+|++++.+|+..+....+
T Consensus 53 s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 53 SVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778899999999999988876643
No 79
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=28.07 E-value=1.6e+02 Score=26.07 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHh-hhcHHHhHHHHHhHHHhh--------hhhhhHHhHHHhHHHHHHHHHHHH
Q psy7684 167 LENLRRELMYHN-KLSEQQNVRLHQQRETLT--------KKQAEVNSVDLRISELQERLQRKR 220 (332)
Q Consensus 167 L~kL~kEL~~rn-kLn~~Qs~rL~QQRe~L~--------kRn~Eva~mDrRI~ELreRL~kKK 220 (332)
+++|.+||...- ---.+=...+..-|+.=+ -...+.+.+++||.+|..+|.+-+
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~A~ 72 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLENLK 72 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 567777776542 222233333333332211 234577889999999999987543
No 80
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=27.62 E-value=7.6e+02 Score=26.18 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=18.3
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhc
Q psy7684 115 LSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLK 151 (332)
Q Consensus 115 L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR 151 (332)
+-..++.-+..+.+|.+.|..+- ++|+.+.+.|=
T Consensus 86 l~~~le~~~~~~~ek~~~l~~~~---~~L~~~F~~LA 119 (475)
T PRK10361 86 VTTRMEAAQQHADDKIRQMINSE---QRLSEQFENLA 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 44445555566666666555443 34555555553
No 81
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.23 E-value=1e+03 Score=27.52 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=7.1
Q ss_pred HHHhhhhHHHHHHHHHH
Q psy7684 81 LRRLRDRVEQQELKLRK 97 (332)
Q Consensus 81 LrrLRe~~e~QEaKLrk 97 (332)
|..|.+..+.+...+..
T Consensus 890 L~el~~el~~l~~~~~~ 906 (1311)
T TIGR00606 890 LVELSTEVQSLIREIKD 906 (1311)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 82
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=26.56 E-value=6.5e+02 Score=25.08 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=31.5
Q ss_pred hhhhcccCc-ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy7684 21 AADLLTEGV-ELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLK 65 (332)
Q Consensus 21 ~~~~l~~g~-elTLsELqemAtRQQQQIeaQqQlL~AKEqRLr~Lk 65 (332)
++|.+.+-+ +||..+|.+.......-|.+|...+.--+....-|+
T Consensus 56 ~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~ 101 (301)
T PF06120_consen 56 SLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLK 101 (301)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 899999999999888888888877665555555443
No 83
>PRK00106 hypothetical protein; Provisional
Probab=25.84 E-value=4e+02 Score=28.40 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=13.5
Q ss_pred HHHhHHHhhhhhhhHHhHHHhHHHHHHHHHH
Q psy7684 188 LHQQRETLTKKQAEVNSVDLRISELQERLQR 218 (332)
Q Consensus 188 L~QQRe~L~kRn~Eva~mDrRI~ELreRL~k 218 (332)
|.+..+.|++|..++..-++.|....+.|.+
T Consensus 106 L~qREE~LekRee~LekrE~eLe~kekeLe~ 136 (535)
T PRK00106 106 LTERATSLDRKDENLSSKEKTLESKEQSLTD 136 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333333
No 84
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=25.44 E-value=1.2e+02 Score=26.44 Aligned_cols=41 Identities=41% Similarity=0.625 Sum_probs=34.1
Q ss_pred cCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCC
Q psy7684 112 NISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRT 155 (332)
Q Consensus 112 N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~ 155 (332)
-..|..||+.|...|.+|+.|+.. +++.|..|++.++..+.
T Consensus 97 ~~~L~~El~KVn~Fy~~k~~el~~---~~~~L~~ql~~l~~~~~ 137 (275)
T PF03105_consen 97 FELLDEELEKVNDFYKEKEKELRE---RLEELQKQLEELREQRS 137 (275)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhh
Confidence 345678999999999999999855 88899999999987654
No 85
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=25.38 E-value=2.2e+02 Score=30.25 Aligned_cols=69 Identities=16% Similarity=0.396 Sum_probs=42.8
Q ss_pred hhhhccCcchhhh----HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCC-CcchHHHHHHHHHHHH
Q psy7684 107 QNKMNNISLSSDL----ESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSH-PHLSAELENLRRELMY 176 (332)
Q Consensus 107 q~rl~N~~L~~Ei----eqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~-~~aa~EL~kL~kEL~~ 176 (332)
...|.+-..++|| +.+..-+.+.-++|- -..+++++..++++|+.+....|.- ..+-.|+++|.+|+..
T Consensus 157 ~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 157 GEDLKTVETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKA 230 (555)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3335555444444 334445555555554 2667789999999999985533321 1267899999999854
No 86
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=25.15 E-value=1.7e+02 Score=29.28 Aligned_cols=51 Identities=33% Similarity=0.523 Sum_probs=0.0
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHH--------------HHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhh
Q psy7684 117 SDLESIRALFNEKEKELCMAVAK--------------VEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKL 180 (332)
Q Consensus 117 ~Eieqm~~LF~eKqkEL~~Avsk--------------VeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkL 180 (332)
.|||-|..|+.+|++.|.+|.-= ++.|+.+| +. +..++.-|+-||.+|.-|
T Consensus 62 ~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L------------~~-~~e~v~qLrHeL~~kdeL 126 (306)
T PF04849_consen 62 NDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQL------------GA-ALEQVEQLRHELSMKDEL 126 (306)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHH------------HH-HHHHHHHHHHHHHHHHHH
No 87
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=24.48 E-value=2.2e+02 Score=25.14 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=30.8
Q ss_pred HHHHHHHHHHH-hhhcHHHhHHHHHhH------HHh--hhhhhhHHhHHHhHHHHHHHHHH
Q psy7684 167 LENLRRELMYH-NKLSEQQNVRLHQQR------ETL--TKKQAEVNSVDLRISELQERLQR 218 (332)
Q Consensus 167 L~kL~kEL~~r-nkLn~~Qs~rL~QQR------e~L--~kRn~Eva~mDrRI~ELreRL~k 218 (332)
+++|.+||... +.--.+=...+..-| |+- .-...+.+.+++||.+|..+|.+
T Consensus 12 ~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~ 72 (157)
T PRK01885 12 YARLKQELDYLWREERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLEN 72 (157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 56777777754 323333333333332 221 22345778899999999999954
No 88
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=24.29 E-value=1.2e+03 Score=27.37 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=23.7
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccC
Q psy7684 115 LSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRG 153 (332)
Q Consensus 115 L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~ 153 (332)
...+++....-+.+-+.++..+..+..++..+|+.|+..
T Consensus 880 a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~ 918 (1353)
T TIGR02680 880 QRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEES 918 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666666666666666666553
No 89
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=24.23 E-value=8.3e+02 Score=25.56 Aligned_cols=77 Identities=16% Similarity=0.294 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhhHHHHHHHHHHHHhhccchhhhhhccCcchhhhHHHHHhhHHHHHH
Q psy7684 53 LIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKE 132 (332)
Q Consensus 53 lL~AKEqRLr~Lk~qe~r~~q~a~e~ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~N~~L~~Eieqm~~LF~eKqkE 132 (332)
++..-|...--|-.. .|..+.....+-+..-.+++..=..+|...|.-.|-+|-.+ +.+.+..+...=|.|
T Consensus 224 LL~~sE~~VN~Ls~r-ar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~--------~a~~~~~lI~~Le~q 294 (434)
T PRK15178 224 ILSFAEQHVNTVSAR-MQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKE--------TITAIYQLIAGFETQ 294 (434)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHH--------HHHHHHHHHHHHHHH
Confidence 666666666666443 22333333344455555555555566666776666666544 445555555555555
Q ss_pred HHHHHH
Q psy7684 133 LCMAVA 138 (332)
Q Consensus 133 L~~Avs 138 (332)
|..+-+
T Consensus 295 La~~~a 300 (434)
T PRK15178 295 LAEAKA 300 (434)
T ss_pred HHHHHH
Confidence 554433
No 90
>KOG0243|consensus
Probab=24.15 E-value=1.2e+03 Score=27.35 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhcc
Q psy7684 129 KEKELCMAVAKVEELTHQLEDLKR 152 (332)
Q Consensus 129 KqkEL~~AvskVeeLt~QLE~LR~ 152 (332)
+++|......+++++..+|+.+++
T Consensus 439 ~e~e~~~~~~~ieele~el~~~~~ 462 (1041)
T KOG0243|consen 439 EEKEKKEMAEQIEELEEELENLEK 462 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554
No 91
>PF15456 Uds1: Up-regulated During Septation
Probab=23.88 E-value=1.8e+02 Score=25.18 Aligned_cols=28 Identities=29% Similarity=0.397 Sum_probs=17.2
Q ss_pred hHHHhhhhhhhHHhHHHhHHHHHHHHHH
Q psy7684 191 QRETLTKKQAEVNSVDLRISELQERLQR 218 (332)
Q Consensus 191 QRe~L~kRn~Eva~mDrRI~ELreRL~k 218 (332)
.++...+-..|.+..|++|.|+-.-||+
T Consensus 72 ~~~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 72 SRESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455556666666666666666666664
No 92
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.62 E-value=7.5e+02 Score=24.77 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=24.9
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhcc
Q psy7684 117 SDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKR 152 (332)
Q Consensus 117 ~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~ 152 (332)
.+++.....+..-+.++..+-.+++.+...+..++.
T Consensus 248 ~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~ 283 (562)
T PHA02562 248 MDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEK 283 (562)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555555666777777777888888888777754
No 93
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=22.83 E-value=5.1e+02 Score=27.18 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=6.9
Q ss_pred HHHhHHHhhhhhhhHHh
Q psy7684 188 LHQQRETLTKKQAEVNS 204 (332)
Q Consensus 188 L~QQRe~L~kRn~Eva~ 204 (332)
|.+.-+.|++|..++..
T Consensus 85 L~qRee~Lekr~e~Lek 101 (514)
T TIGR03319 85 LLQREETLDRKMESLDK 101 (514)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444333
No 94
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=22.58 E-value=4.8e+02 Score=22.90 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhcc
Q psy7684 129 KEKELCMAVAKVEELTHQLEDLKR 152 (332)
Q Consensus 129 KqkEL~~AvskVeeLt~QLE~LR~ 152 (332)
-.+++..-..||++|+.+|+.|..
T Consensus 107 s~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 107 SRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888888999999999999875
No 95
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=22.44 E-value=93 Score=22.39 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=11.0
Q ss_pred HHHHHhhHHHHHHHHH
Q psy7684 120 ESIRALFNEKEKELCM 135 (332)
Q Consensus 120 eqm~~LF~eKqkEL~~ 135 (332)
|-+...+.+|+++|..
T Consensus 17 edv~~~LE~Kek~L~n 32 (35)
T PF08182_consen 17 EDVCKELEQKEKELSN 32 (35)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4556667778888764
No 96
>PRK00846 hypothetical protein; Provisional
Probab=22.14 E-value=1.1e+02 Score=24.79 Aligned_cols=47 Identities=17% Similarity=0.059 Sum_probs=32.1
Q ss_pred hhhhhhhcccCc---ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy7684 18 TLKAADLLTEGV---ELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFL 64 (332)
Q Consensus 18 ~~k~~~~l~~g~---elTLsELqemAtRQQQQIeaQqQlL~AKEqRLr~L 64 (332)
+..-++.||..+ +-|+.+|.+.-++||++|+..+..+..=-.||+-+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666665 77888999999999999988776555444444443
No 97
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.98 E-value=2.6e+02 Score=25.99 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHhhccchhhhhhccCcchhhhHH-----------HHHhhHHHHHHHHHHHHHHHHHHHhHHHhcc
Q psy7684 84 LRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLES-----------IRALFNEKEKELCMAVAKVEELTHQLEDLKR 152 (332)
Q Consensus 84 LRe~~e~QEaKLrklRalRGQVeq~rl~N~~L~~Eieq-----------m~~LF~eKqkEL~~AvskVeeLt~QLE~LR~ 152 (332)
+|+++...|..+..+++--...+.+ .-...+|+.+ +..--++=..||..+..+++.|..++++++.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred C
Q psy7684 153 G 153 (332)
Q Consensus 153 ~ 153 (332)
.
T Consensus 168 ~ 168 (206)
T PRK10884 168 T 168 (206)
T ss_pred H
No 98
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=21.62 E-value=5.5e+02 Score=25.73 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHH
Q psy7684 163 LSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKR 220 (332)
Q Consensus 163 aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKK 220 (332)
+..+.|.++++----+..=.+=+.+....++.+.....++..+|++|..|+......+
T Consensus 198 ~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~ 255 (294)
T COG1340 198 LFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAK 255 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666667778888889999999999999999999988766544
No 99
>PLN03019 carbonic anhydrase
Probab=21.45 E-value=1.1e+02 Score=30.94 Aligned_cols=58 Identities=24% Similarity=0.325 Sum_probs=43.4
Q ss_pred hccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHH
Q psy7684 110 MNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRE 173 (332)
Q Consensus 110 l~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kE 173 (332)
..|.+.-+.|+.+..|+.+|..--.+|.+|++++|..|+..-++. +. +-..+++|...
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~-~~~ale~Ll~G 130 (330)
T PLN03019 73 MGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSD-----SK-SFDPVERIKEG 130 (330)
T ss_pred HhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCC-----Cc-hhHHHHHHHHH
Confidence 344455677899999999999988999999999999998776441 22 34556666555
No 100
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.57 E-value=1.5e+02 Score=22.90 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=16.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHhh
Q psy7684 204 SVDLRISELQERLQRKRLLNQQLAS 228 (332)
Q Consensus 204 ~mDrRI~ELreRL~kKKaa~qQk~~ 228 (332)
+++.||+.|-.||..-+..++.-+.
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~ 53 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEA 53 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888766655554443
Done!