Query psy7684
Match_columns 332
No_of_seqs 42 out of 44
Neff 2.8
Searched_HMMs 29240
Date Sat Aug 17 00:46:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 83.9 23 0.00078 31.5 18.4 98 115-223 51-148 (256)
2 3oja_B Anopheles plasmodium-re 72.4 68 0.0023 30.5 13.7 25 193-217 537-561 (597)
3 3oja_B Anopheles plasmodium-re 66.9 49 0.0017 31.5 11.1 36 188-223 525-560 (597)
4 1i84_S Smooth muscle myosin he 66.2 37 0.0013 36.4 11.2 6 208-213 1040-1045(1184)
5 2k48_A Nucleoprotein; viral pr 60.8 57 0.0019 27.2 9.0 68 117-220 35-102 (107)
6 3nmd_A CGMP dependent protein 55.3 31 0.0011 26.8 6.1 43 188-230 21-63 (72)
7 2dfs_A Myosin-5A; myosin-V, in 49.7 1.2E+02 0.0042 32.7 11.7 23 130-152 976-998 (1080)
8 1i84_S Smooth muscle myosin he 49.6 35 0.0012 36.6 7.6 32 120-151 965-996 (1184)
9 1l8d_A DNA double-strand break 46.1 98 0.0033 23.7 7.8 36 118-153 11-46 (112)
10 2f23_A Anti-cleavage anti-GREA 44.9 51 0.0017 27.4 6.4 54 165-218 10-71 (156)
11 2dfs_A Myosin-5A; myosin-V, in 44.2 63 0.0022 34.9 8.5 35 186-220 991-1025(1080)
12 2ic9_A Nucleocapsid protein; h 38.8 1.6E+02 0.0054 24.0 8.6 70 116-221 4-73 (96)
13 1wt6_A Myotonin-protein kinase 37.7 45 0.0015 26.6 4.6 37 114-150 28-64 (81)
14 3efg_A Protein SLYX homolog; x 37.1 14 0.00049 28.4 1.7 49 16-64 10-61 (78)
15 2p4v_A Transcription elongatio 32.4 1.5E+02 0.0052 24.8 7.4 52 167-218 11-71 (158)
16 3ggz_E Vacuolar protein-sortin 32.3 20 0.00069 23.8 1.6 15 89-103 14-29 (29)
17 4fi5_A Nucleoprotein; structur 28.4 2.6E+02 0.009 23.4 8.4 71 116-222 21-91 (113)
18 3swk_A Vimentin; cytoskeleton, 27.5 55 0.0019 25.3 3.6 31 98-128 2-32 (86)
19 4dnd_A Syntaxin-10, SYN10; str 26.5 2.7E+02 0.0093 22.9 10.3 64 125-193 28-91 (130)
20 1grj_A GREA protein; transcrip 26.3 2.3E+02 0.0078 23.6 7.5 19 200-218 53-71 (158)
21 4dk0_A Putative MACA; alpha-ha 24.6 3.6E+02 0.012 23.8 9.2 37 117-153 115-151 (369)
22 1dh3_A Transcription factor CR 24.4 31 0.0011 24.8 1.5 45 85-129 8-55 (55)
23 2b5u_A Colicin E3; high resolu 24.2 57 0.002 33.5 3.9 71 141-212 294-368 (551)
24 2xus_A Breast cancer metastasi 23.8 1.1E+02 0.0038 22.2 4.3 27 200-226 13-39 (49)
25 3na7_A HP0958; flagellar bioge 23.7 3.7E+02 0.013 23.6 19.3 93 115-220 95-188 (256)
26 2jo8_A Serine/threonine-protei 23.5 60 0.0021 23.8 2.9 19 203-221 24-42 (51)
27 2ocy_A RAB guanine nucleotide 23.2 1.5E+02 0.005 25.8 5.8 31 200-230 108-138 (154)
28 3ter_A Mammalian stromal inter 22.6 3.6E+02 0.012 23.1 9.6 21 115-135 4-24 (136)
29 3ol1_A Vimentin; structural ge 21.8 92 0.0031 25.2 4.1 31 98-128 22-52 (119)
30 3oja_A Leucine-rich immune mol 21.2 3.5E+02 0.012 25.2 8.4 44 104-147 443-486 (487)
31 2eqb_B RAB guanine nucleotide 20.6 3.4E+02 0.012 22.0 9.5 94 113-219 1-95 (97)
32 2ic6_A Nucleocapsid protein; h 20.5 3.1E+02 0.011 21.5 8.8 65 117-217 5-69 (78)
33 2eqb_B RAB guanine nucleotide 20.1 3.5E+02 0.012 21.9 7.0 53 94-149 34-94 (97)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.85 E-value=23 Score=31.45 Aligned_cols=98 Identities=17% Similarity=0.241 Sum_probs=69.4
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHH
Q psy7684 115 LSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRET 194 (332)
Q Consensus 115 L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~ 194 (332)
+-.+++.+..-....+.++....++++....+|...++ ..|++.|-+|+....+-...-.+.+..--+.
T Consensus 51 ~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~-----------~kE~~aL~kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 51 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS-----------ERELRSLNIEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS-----------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888888888888899988888865442 3577888888877777776666666666666
Q ss_pred hhhhhhhHHhHHHhHHHHHHHHHHHHHHH
Q psy7684 195 LTKKQAEVNSVDLRISELQERLQRKRLLN 223 (332)
Q Consensus 195 L~kRn~Eva~mDrRI~ELreRL~kKKaa~ 223 (332)
+.....+++....++++++..|..+++..
T Consensus 120 ie~~~~~l~~~~~~l~~~~~~l~~~~~~~ 148 (256)
T 3na7_A 120 IKRKSEKQEDLKKEMLELEKLALELESLV 148 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666555443
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.41 E-value=68 Score=30.49 Aligned_cols=25 Identities=4% Similarity=0.105 Sum_probs=11.2
Q ss_pred HHhhhhhhhHHhHHHhHHHHHHHHH
Q psy7684 193 ETLTKKQAEVNSVDLRISELQERLQ 217 (332)
Q Consensus 193 e~L~kRn~Eva~mDrRI~ELreRL~ 217 (332)
+.+.+=..|+..|++++.+-++++.
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHH
Confidence 3333333445555554444444443
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.85 E-value=49 Score=31.46 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=18.9
Q ss_pred HHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHHH
Q psy7684 188 LHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLN 223 (332)
Q Consensus 188 L~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa~ 223 (332)
++......++.+.+...+++.+.+|+.++..+|...
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 333344444555555555566666666665555433
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=66.15 E-value=37 Score=36.37 Aligned_cols=6 Identities=67% Similarity=0.767 Sum_probs=0.0
Q ss_pred hHHHHH
Q psy7684 208 RISELQ 213 (332)
Q Consensus 208 RI~ELr 213 (332)
.|.+|.
T Consensus 1040 el~ele 1045 (1184)
T 1i84_S 1040 MISELE 1045 (1184)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 5
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=60.83 E-value=57 Score=27.16 Aligned_cols=68 Identities=21% Similarity=0.376 Sum_probs=53.3
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhh
Q psy7684 117 SDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLT 196 (332)
Q Consensus 117 ~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~ 196 (332)
++|+.+-.=+.+-|.+|..|.-|+.+.+++.|- .|-. + ++..+.
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~--------DPDe-----v-----------------------NK~tl~ 78 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEV--------DPDD-----V-----------------------NKSTLQ 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCH-----H-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCcH-----H-----------------------HHHHHH
Confidence 567777777778899999999999999999874 2221 1 345788
Q ss_pred hhhhhHHhHHHhHHHHHHHHHHHH
Q psy7684 197 KKQAEVNSVDLRISELQERLQRKR 220 (332)
Q Consensus 197 kRn~Eva~mDrRI~ELreRL~kKK 220 (332)
+|..+|.++.-.|+||+..|--.-
T Consensus 79 ~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 79 NRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987765433
No 6
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.29 E-value=31 Score=26.82 Aligned_cols=43 Identities=33% Similarity=0.359 Sum_probs=35.0
Q ss_pred HHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHhhhh
Q psy7684 188 LHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQL 230 (332)
Q Consensus 188 L~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa~qQk~~~~ 230 (332)
+.+=.+.|.++..|+..-|.+|.+|..+|..|-...+.+.+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567889999999999999999999999998888776544
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=49.70 E-value=1.2e+02 Score=32.72 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHhcc
Q psy7684 130 EKELCMAVAKVEELTHQLEDLKR 152 (332)
Q Consensus 130 qkEL~~AvskVeeLt~QLE~LR~ 152 (332)
++|+..+..+|..|+..+++|+.
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRK 998 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777777777777654
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=49.60 E-value=35 Score=36.56 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhc
Q psy7684 120 ESIRALFNEKEKELCMAVAKVEELTHQLEDLK 151 (332)
Q Consensus 120 eqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR 151 (332)
+.+..-+.+-+.++.....+++++..++..++
T Consensus 965 eele~~l~~l~~e~~~le~~l~~l~~el~~le 996 (1184)
T 1i84_S 965 EEEEAARQKLQLEKVTADGKIKKMEDDILIME 996 (1184)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444433
No 9
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.11 E-value=98 Score=23.74 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=22.9
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccC
Q psy7684 118 DLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRG 153 (332)
Q Consensus 118 Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~ 153 (332)
+++.++.-+..-..+.....++++++...+..|...
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~ 46 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA 46 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 444444444444444555677888889999998763
No 10
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=44.92 E-value=51 Score=27.43 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHhHHHHHhHHH--------hhhhhhhHHhHHHhHHHHHHHHHH
Q psy7684 165 AELENLRRELMYHNKLSEQQNVRLHQQRET--------LTKKQAEVNSVDLRISELQERLQR 218 (332)
Q Consensus 165 ~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~--------L~kRn~Eva~mDrRI~ELreRL~k 218 (332)
.=+++|..||..+..--.+-...+..-|+. ..-...+...+++||.+|..+|..
T Consensus 10 ~g~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~ 71 (156)
T 2f23_A 10 AGYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSR 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347888888877443333334444444432 223345567789999999999876
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=44.24 E-value=63 Score=34.88 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=22.6
Q ss_pred HHHHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHH
Q psy7684 186 VRLHQQRETLTKKQAEVNSVDLRISELQERLQRKR 220 (332)
Q Consensus 186 ~rL~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKK 220 (332)
..+...++.+.+-..|...++.++.++.++|..|-
T Consensus 991 ~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv 1025 (1080)
T 2dfs_A 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666677777777777777776443
No 12
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=38.81 E-value=1.6e+02 Score=24.03 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=53.0
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHh
Q psy7684 116 SSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETL 195 (332)
Q Consensus 116 ~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L 195 (332)
-++|+.+-.=+.+-+.+|..|.-|+.+.+++.|- .|-. + +...+
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~--------DPDe-----v-----------------------Nk~~~ 47 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVEL--------DPDD-----V-----------------------NKSTL 47 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCH-----H-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCcH-----H-----------------------HHHHH
Confidence 3556666666777888999999999999998873 1221 1 24578
Q ss_pred hhhhhhHHhHHHhHHHHHHHHHHHHH
Q psy7684 196 TKKQAEVNSVDLRISELQERLQRKRL 221 (332)
Q Consensus 196 ~kRn~Eva~mDrRI~ELreRL~kKKa 221 (332)
.+|..+|.++.-.|+||...|--..+
T Consensus 48 ~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 48 QSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999877765554
No 13
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.69 E-value=45 Score=26.56 Aligned_cols=37 Identities=30% Similarity=0.347 Sum_probs=25.5
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHh
Q psy7684 114 SLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDL 150 (332)
Q Consensus 114 ~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~L 150 (332)
.+++||..+++-+..-+.+|.-|.++-++|...++.|
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888777777777777766655444433
No 14
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=37.14 E-value=14 Score=28.41 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=35.4
Q ss_pred chhhhhhhhcccCc---ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy7684 16 SSTLKAADLLTEGV---ELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFL 64 (332)
Q Consensus 16 ~~~~k~~~~l~~g~---elTLsELqemAtRQQQQIeaQqQlL~AKEqRLr~L 64 (332)
..++.-++.||..+ +-|+.+|.+.-++||++|+..+..+..=..|++-+
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666 88999999999999999999887776666665544
No 15
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=32.35 E-value=1.5e+02 Score=24.80 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhh-hcHHHhHHHHHhHHHh--------hhhhhhHHhHHHhHHHHHHHHHH
Q psy7684 167 LENLRRELMYHNK-LSEQQNVRLHQQRETL--------TKKQAEVNSVDLRISELQERLQR 218 (332)
Q Consensus 167 L~kL~kEL~~rnk-Ln~~Qs~rL~QQRe~L--------~kRn~Eva~mDrRI~ELreRL~k 218 (332)
+++|..||...-+ --.+=...+..-|+.= .-...+.+.+|+||.+|..+|.+
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~ 71 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMEN 71 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778888776622 1222222232222111 11235668899999999988864
No 16
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=32.35 E-value=20 Score=23.80 Aligned_cols=15 Identities=60% Similarity=0.962 Sum_probs=9.4
Q ss_pred HHHHHHH-HHHHhhcc
Q psy7684 89 EQQELKL-RKLRALRG 103 (332)
Q Consensus 89 e~QEaKL-rklRalRG 103 (332)
+..|-|| .+||||||
T Consensus 14 eekEDkLAqRLRALR~ 29 (29)
T 3ggz_E 14 DEKEDKLAQRLRALRG 29 (29)
T ss_pred chhhHHHHHHHHHHcC
Confidence 3445555 37888886
No 17
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=28.45 E-value=2.6e+02 Score=23.39 Aligned_cols=71 Identities=28% Similarity=0.409 Sum_probs=53.6
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHh
Q psy7684 116 SSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETL 195 (332)
Q Consensus 116 ~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L 195 (332)
+-.|+.|-.=+.+-+.+|..|.-|+.+.+.+.|- .|- |+ +...+
T Consensus 21 ~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~--------DPD-----ev-----------------------NK~tl 64 (113)
T 4fi5_A 21 SMTMEELQREINAHEGQLVIARQKVRDAEKQYEK--------DPD-----EL-----------------------NKRTL 64 (113)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCC-----HH-----------------------HHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCc-----HH-----------------------HHHHH
Confidence 4456666666777888999999999999998873 122 11 24578
Q ss_pred hhhhhhHHhHHHhHHHHHHHHHHHHHH
Q psy7684 196 TKKQAEVNSVDLRISELQERLQRKRLL 222 (332)
Q Consensus 196 ~kRn~Eva~mDrRI~ELreRL~kKKaa 222 (332)
.+|..+|.++.-.|+||+..|--..++
T Consensus 65 ~~R~~~Vs~lq~KiaeLKrqLAd~va~ 91 (113)
T 4fi5_A 65 TDREGVAVSIQAKIDELKRQLADRIAT 91 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999998877665553
No 18
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=27.50 E-value=55 Score=25.34 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=26.1
Q ss_pred HHhhccchhhhhhccCcchhhhHHHHHhhHH
Q psy7684 98 LRALRGQVDQNKMNNISLSSDLESIRALFNE 128 (332)
Q Consensus 98 lRalRGQVeq~rl~N~~L~~Eieqm~~LF~e 128 (332)
|+.||.|++.-..-|+.|..||++|......
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~ed 32 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMR 32 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999998877554
No 19
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=26.54 E-value=2.7e+02 Score=22.93 Aligned_cols=64 Identities=19% Similarity=0.045 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHH
Q psy7684 125 LFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRE 193 (332)
Q Consensus 125 LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe 193 (332)
=|-.=+.|+..++.+++.|-+.-..|+... +++ +..|+..+++||.--=+==+|+-.-|...=.
T Consensus 28 PF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~----~~~-s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 28 PFFVVRGEVQKAVNTARGLYQRWCELLQES----AAV-GREELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccC----CCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778899999999999999998888752 233 4579999999998776666777777765544
No 20
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=26.27 E-value=2.3e+02 Score=23.60 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=15.5
Q ss_pred hhHHhHHHhHHHHHHHHHH
Q psy7684 200 AEVNSVDLRISELQERLQR 218 (332)
Q Consensus 200 ~Eva~mDrRI~ELreRL~k 218 (332)
.+.+.+|+||.+|..+|.+
T Consensus 53 ~~q~~~e~ri~~Le~~L~~ 71 (158)
T 1grj_A 53 EQQGFCEGRIKDIEAKLSN 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4557789999999999865
No 21
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=24.64 E-value=3.6e+02 Score=23.77 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=26.7
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccC
Q psy7684 117 SDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRG 153 (332)
Q Consensus 117 ~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~ 153 (332)
.|++....-+...+.++..+.+.++++..+|+.++..
T Consensus 115 ~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 115 DTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777766654
No 22
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.40 E-value=31 Score=24.82 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHH---HHhhccchhhhhhccCcchhhhHHHHHhhHHH
Q psy7684 85 RDRVEQQELKLRK---LRALRGQVDQNKMNNISLSSDLESIRALFNEK 129 (332)
Q Consensus 85 Re~~e~QEaKLrk---lRalRGQVeq~rl~N~~L~~Eieqm~~LF~eK 129 (332)
+-+.-++..+.+| +-.|-.+|++=.-.|..|..+++.+...|.+|
T Consensus 8 ~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~~~ 55 (55)
T 1dh3_A 8 KNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4444555555444 44555555555566777777777776666543
No 23
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=24.17 E-value=57 Score=33.48 Aligned_cols=71 Identities=13% Similarity=0.272 Sum_probs=45.7
Q ss_pred HHHHHhHHHhccCCC----CCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHH
Q psy7684 141 EELTHQLEDLKRGRT----HQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISEL 212 (332)
Q Consensus 141 eeLt~QLE~LR~~r~----~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~EL 212 (332)
++++++.|+=.+.+. .+|--. |-.|+++.++||-..++.=..++.++.---..++-|..|+.+.++-++++
T Consensus 294 ~elkqrqeee~r~~qew~~~hp~~~-Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~ 368 (551)
T 2b5u_A 294 DQVKQRQDEENRRQQEWDATHPVEA-AERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADA 368 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHH
Confidence 455555555444432 133333 77889999999999988877777776644456666666666666655544
No 24
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=23.85 E-value=1.1e+02 Score=22.21 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=22.8
Q ss_pred hhHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy7684 200 AEVNSVDLRISELQERLQRKRLLNQQL 226 (332)
Q Consensus 200 ~Eva~mDrRI~ELreRL~kKKaa~qQk 226 (332)
.+++.+++--++|+++|++-|.+...+
T Consensus 13 d~l~~LEkqF~~LkEqlY~ERl~ql~~ 39 (49)
T 2xus_A 13 SEMLDLEKQFSELKEKLFRERLSQLRL 39 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999775543
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.69 E-value=3.7e+02 Score=23.57 Aligned_cols=93 Identities=19% Similarity=0.298 Sum_probs=55.6
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHH
Q psy7684 115 LSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRET 194 (332)
Q Consensus 115 L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~ 194 (332)
|..||+....-...-+.++.-...+++++...++.+.. ++..+..+|.-...=-...-+.+......
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~-------------~l~~~~~~l~~~~~~~~~~~~e~~~e~~~ 161 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKK-------------EMLELEKLALELESLVENEVKNIKETQQI 161 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667766666666677777777777777766665543 34444444432222222233444444443
Q ss_pred h-hhhhhhHHhHHHhHHHHHHHHHHHH
Q psy7684 195 L-TKKQAEVNSVDLRISELQERLQRKR 220 (332)
Q Consensus 195 L-~kRn~Eva~mDrRI~ELreRL~kKK 220 (332)
| .+|..=+..||.+|-..=+|+++.+
T Consensus 162 l~~~r~~l~~~i~~~lL~~Yerir~~~ 188 (256)
T 3na7_A 162 IFKKKEDLVEKTEPKIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Confidence 3 5555666788999999999988743
No 26
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=23.55 E-value=60 Score=23.80 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=17.0
Q ss_pred HhHHHhHHHHHHHHHHHHH
Q psy7684 203 NSVDLRISELQERLQRKRL 221 (332)
Q Consensus 203 a~mDrRI~ELreRL~kKKa 221 (332)
+.|++-|.||+.|-..||-
T Consensus 24 ~~Me~Ei~elr~RY~~KRq 42 (51)
T 2jo8_A 24 PMMEQEIEEIRQKYQSKRQ 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHh
Confidence 4799999999999999983
No 27
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.16 E-value=1.5e+02 Score=25.75 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=21.6
Q ss_pred hhHHhHHHhHHHHHHHHHHHHHHHHHHhhhh
Q psy7684 200 AEVNSVDLRISELQERLQRKRLLNQQLASQL 230 (332)
Q Consensus 200 ~Eva~mDrRI~ELreRL~kKKaa~qQk~~~~ 230 (332)
.+-+..++|...|+.+|.-|...+.-...++
T Consensus 108 ~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql 138 (154)
T 2ocy_A 108 KEKYAIEILNKRLTEQLREKDTLLDTLTLQL 138 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888886665444443
No 28
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=22.64 E-value=3.6e+02 Score=23.05 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=14.4
Q ss_pred chhhhHHHHHhhHHHHHHHHH
Q psy7684 115 LSSDLESIRALFNEKEKELCM 135 (332)
Q Consensus 115 L~~Eieqm~~LF~eKqkEL~~ 135 (332)
-++|||++++-|.+-++||..
T Consensus 4 ~~~Ele~lr~aL~~AE~eLe~ 24 (136)
T 3ter_A 4 NHTEMENLRVQLEEAERRLEA 24 (136)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHHHHh
Confidence 467888888877776666543
No 29
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.81 E-value=92 Score=25.15 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=24.9
Q ss_pred HHhhccchhhhhhccCcchhhhHHHHHhhHH
Q psy7684 98 LRALRGQVDQNKMNNISLSSDLESIRALFNE 128 (332)
Q Consensus 98 lRalRGQVeq~rl~N~~L~~Eieqm~~LF~e 128 (332)
|+.||.|++.-...|+.|..||+.+......
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~ed 52 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMR 52 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888899999888888776544
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.19 E-value=3.5e+02 Score=25.18 Aligned_cols=44 Identities=18% Similarity=0.093 Sum_probs=22.7
Q ss_pred chhhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q psy7684 104 QVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQL 147 (332)
Q Consensus 104 QVeq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QL 147 (332)
..++-+-.|..+-.||+.+-....++-..+.-|+.+..-|..||
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 443 KETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 33333444445555555555555555555555555555555554
No 31
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.65 E-value=3.4e+02 Score=21.97 Aligned_cols=94 Identities=20% Similarity=0.292 Sum_probs=51.1
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHH-HHhhhcHHHhHHHHHh
Q psy7684 113 ISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELM-YHNKLSEQQNVRLHQQ 191 (332)
Q Consensus 113 ~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~-~rnkLn~~Qs~rL~QQ 191 (332)
|.|..+++..+.=+.+=+.++...-.+...|...|.+=+..|. .|-.+..++-.||- |=.-|=++=|..+..-
T Consensus 1 ~~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~------~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 1 GPLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRT------KAEEEADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666555442 13344444444442 2233344444444433
Q ss_pred HHHhhhhhhhHHhHHHhHHHHHHHHHHH
Q psy7684 192 RETLTKKQAEVNSVDLRISELQERLQRK 219 (332)
Q Consensus 192 Re~L~kRn~Eva~mDrRI~ELreRL~kK 219 (332)
..+-+.+++|...|+..|.-|
T Consensus 75 -------r~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 75 -------RKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHhhc
Confidence 234567788888888887654
No 32
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.49 E-value=3.1e+02 Score=21.50 Aligned_cols=65 Identities=20% Similarity=0.366 Sum_probs=49.2
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHHhh
Q psy7684 117 SDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLT 196 (332)
Q Consensus 117 ~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~ 196 (332)
++|+.+-.=+..-+.+|..|.-|+.+.+++.|- +|-. + +...+.
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~--------DPDe-----v-----------------------NK~~~~ 48 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVEL--------DPDD-----V-----------------------NKSTLQ 48 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCH-----H-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCcH-----H-----------------------HHHHHH
Confidence 456666666677788899999999999998873 1221 1 245788
Q ss_pred hhhhhHHhHHHhHHHHHHHHH
Q psy7684 197 KKQAEVNSVDLRISELQERLQ 217 (332)
Q Consensus 197 kRn~Eva~mDrRI~ELreRL~ 217 (332)
+|..+|.++.-.|+||..-|-
T Consensus 49 ~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 49 SRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999976554
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.07 E-value=3.5e+02 Score=21.93 Aligned_cols=53 Identities=26% Similarity=0.391 Sum_probs=34.8
Q ss_pred HHHHHHhhccchhhhhhccCcchhhhHHHH-HhhHHH-------HHHHHHHHHHHHHHHHhHHH
Q psy7684 94 KLRKLRALRGQVDQNKMNNISLSSDLESIR-ALFNEK-------EKELCMAVAKVEELTHQLED 149 (332)
Q Consensus 94 KLrklRalRGQVeq~rl~N~~L~~Eieqm~-~LF~eK-------qkEL~~AvskVeeLt~QLE~ 149 (332)
.|..-++.|+.++..+ ..+..|||.++ +||.+- .++-..+--|+++|..||.+
T Consensus 34 ~l~eE~~~R~~aE~~~---~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 34 DIAKENELRTKAEEEA---DKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667777777654 45778888886 577773 33444445677788888765
Done!