Query psy7684
Match_columns 332
No_of_seqs 42 out of 44
Neff 2.8
Searched_HMMs 13730
Date Sat Aug 17 00:46:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7684.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7684hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1st6a3 a.24.9.1 (A:253-371) V 17.7 54 0.004 25.4 3.9 25 131-155 67-91 (119)
2 d1st6a4 a.24.9.1 (A:372-488) V 11.9 79 0.0058 24.4 3.3 39 117-155 42-82 (117)
3 d1lvfa_ a.47.2.1 (A:) Syntaxin 11.0 2.7E+02 0.02 19.9 11.8 63 126-193 4-66 (106)
4 d1yzma1 a.2.19.1 (A:456-501) F 10.1 2.4E+02 0.017 18.7 5.0 34 186-219 2-44 (46)
5 d1nkpa_ a.38.1.1 (A:) Myc prot 9.9 2.5E+02 0.018 19.1 5.3 25 128-152 63-87 (88)
6 d1q4ra_ d.58.4.4 (A:) Hypothet 9.9 37 0.0027 23.9 0.6 15 308-322 86-100 (103)
7 d1r8ea1 a.6.1.3 (A:3-120) Tran 8.5 3.2E+02 0.023 19.0 5.7 31 188-218 82-112 (118)
8 d2azea1 e.63.1.1 (A:199-346) T 7.9 2E+02 0.014 22.9 4.4 27 201-227 3-29 (148)
9 d1t3ua_ d.244.1.1 (A:) ZapA ho 7.8 3.1E+02 0.023 18.4 6.2 68 76-149 18-88 (92)
10 d1grja1 a.2.1.1 (A:2-79) GreA 7.7 1.4E+02 0.0099 21.2 3.0 18 201-218 53-70 (78)
No 1
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=17.73 E-value=54 Score=25.38 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhHHHhccCCC
Q psy7684 131 KELCMAVAKVEELTHQLEDLKRGRT 155 (332)
Q Consensus 131 kEL~~AvskVeeLt~QLE~LR~~r~ 155 (332)
+++.--...|+.||.+|-+||....
T Consensus 67 ~~Il~~c~ei~~lt~qLadLr~~G~ 91 (119)
T d1st6a3 67 REILGTCKTLGQMTDQLADLRARGQ 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4555668899999999999998754
No 2
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=11.95 E-value=79 Score=24.41 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=27.2
Q ss_pred hhhHHHHHhhHH--HHHHHHHHHHHHHHHHHhHHHhccCCC
Q psy7684 117 SDLESIRALFNE--KEKELCMAVAKVEELTHQLEDLKRGRT 155 (332)
Q Consensus 117 ~Eieqm~~LF~e--KqkEL~~AvskVeeLt~QLE~LR~~r~ 155 (332)
+|-..|..+++- --.++.--...++.||.+|-+||....
T Consensus 42 ~earkva~~~~~P~~r~~il~lc~ei~~lt~qLadLr~~Gk 82 (117)
T d1st6a4 42 SEARKVAELCEEPKERDDILRSLGEISALTAKLSDLRRHGK 82 (117)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455555532 245666668999999999999998643
No 3
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.98 E-value=2.7e+02 Score=19.90 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHH
Q psy7684 126 FNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRE 193 (332)
Q Consensus 126 F~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe 193 (332)
|-.=+.|+.-++.+++.|-+....++.+. +++ ...|+.-+++||...=+-=+||-.-|..-=.
T Consensus 4 F~~v~~EVq~s~~~~~~l~~~w~~~~~~~----~~~-~~~e~~~~~~eL~~~l~siewdL~dLe~av~ 66 (106)
T d1lvfa_ 4 FFVVKGEVQKAVNTAQGLFQRWTELLQGP----SAA-TREEIDWTTNELRNNLRSIEWDLEDLDETIS 66 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCT----TSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCC-CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34446788999999999999988888762 333 6789999999998777767777776665433
No 4
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.12 E-value=2.4e+02 Score=18.67 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=26.6
Q ss_pred HHHHHhHHHhh---------hhhhhHHhHHHhHHHHHHHHHHH
Q psy7684 186 VRLHQQRETLT---------KKQAEVNSVDLRISELQERLQRK 219 (332)
Q Consensus 186 ~rL~QQRe~L~---------kRn~Eva~mDrRI~ELreRL~kK 219 (332)
++|.+|.+++. .|=.||+.+++-+-||++-+++-
T Consensus 2 nPllqQi~~ik~yI~QAk~a~R~dEV~~Le~NLreLq~e~~~q 44 (46)
T d1yzma1 2 SPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhh
Confidence 45666666653 57889999999999999988764
No 5
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.88 E-value=2.5e+02 Score=19.09 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhcc
Q psy7684 128 EKEKELCMAVAKVEELTHQLEDLKR 152 (332)
Q Consensus 128 eKqkEL~~AvskVeeLt~QLE~LR~ 152 (332)
+-..+...-..+.++|..+|..|++
T Consensus 63 ~l~~~~~~l~~~~~~L~~~l~~L~g 87 (88)
T d1nkpa_ 63 KLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333444444555666666666654
No 6
>d1q4ra_ d.58.4.4 (A:) Hypothetical protein AT3G17210.1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.86 E-value=37 Score=23.94 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=12.1
Q ss_pred ccccceeeeccccch
Q psy7684 308 NQLNKVVCFDFVPEI 322 (332)
Q Consensus 308 ~~~~~~~~~~~~~~~ 322 (332)
.-+.+++||||-|.+
T Consensus 86 p~~~~~~v~Dfe~~~ 100 (103)
T d1q4ra_ 86 GSLDKVLVIDYKPTS 100 (103)
T ss_dssp HTEEEEEEEEECCCC
T ss_pred HhhccEEEEeeEeeE
Confidence 446789999999864
No 7
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=8.50 E-value=3.2e+02 Score=19.00 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=18.1
Q ss_pred HHHhHHHhhhhhhhHHhHHHhHHHHHHHHHH
Q psy7684 188 LHQQRETLTKKQAEVNSVDLRISELQERLQR 218 (332)
Q Consensus 188 L~QQRe~L~kRn~Eva~mDrRI~ELreRL~k 218 (332)
+.++...+.++-..+..+++.|..+++.|.+
T Consensus 82 l~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~ 112 (118)
T d1r8ea1 82 YTEQERQIREKLDFLSALEQTISLVKKRMKR 112 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666677777777666544
No 8
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.86 E-value=2e+02 Score=22.95 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=16.3
Q ss_pred hHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy7684 201 EVNSVDLRISELQERLQRKRLLNQQLA 227 (332)
Q Consensus 201 Eva~mDrRI~ELreRL~kKKaa~qQk~ 227 (332)
|...+..--..+++|+.+|++.++.+-
T Consensus 3 e~~~Le~E~~~~~erI~~K~~~LqeLi 29 (148)
T d2azea1 3 ECQNLEVERQRRLERIKQKQSQLQELI 29 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445566777777777776543
No 9
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.85 E-value=3.1e+02 Score=18.41 Aligned_cols=68 Identities=15% Similarity=0.311 Sum_probs=36.1
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhhccchhhhhhc---cCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy7684 76 AEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMN---NISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLED 149 (332)
Q Consensus 76 ~e~ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~---N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~ 149 (332)
++-++|+.+-+.++ .|+..++.-.|.++..|+- --+|+.|+-.+..-+.+...++ ..++++|...++.
T Consensus 18 ~eee~l~~aA~~ln---~k~~~l~~~~~~~~~~~~lvmaaLnla~e~~~~~~~~~~~~~~~---~~~i~~L~~~ie~ 88 (92)
T d1t3ua_ 18 DERANLESAARYLD---GKMREIRSSGKVIGADRVAVMAALNITHDLLHRKERLDQESSST---RERVRELLDRVDR 88 (92)
T ss_dssp TTHHHHHHHHHHHH---HHHHHHHTTTCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34455665555555 4566666666666555542 3345666655554444333332 3456666666653
No 10
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.68 E-value=1.4e+02 Score=21.19 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=14.3
Q ss_pred hHHhHHHhHHHHHHHHHH
Q psy7684 201 EVNSVDLRISELQERLQR 218 (332)
Q Consensus 201 Eva~mDrRI~ELreRL~k 218 (332)
+...++.||.+|..+|..
T Consensus 53 ~q~~~e~RI~eLe~~L~~ 70 (78)
T d1grja1 53 QQGFCEGRIKDIEAKLSN 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 456789999999988854
Done!