RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7684
(332 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 51.3 bits (123), Expect = 2e-07
Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 22/231 (9%)
Query: 36 LEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKL 95
L VR + Q+ + ++ +R H+ + A R + ++EL
Sbjct: 849 LRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL-- 906
Query: 96 RKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRT 155
+KL+ V++ K +I L + + ++ +E+ KE + K+ L
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE--- 963
Query: 156 HQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEV-----------NS 204
L E + + R+ L + Q E +
Sbjct: 964 ---KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Query: 205 VDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQL 255
+ +SEL+E+ + ++L +++ + +++LV + QL
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM---EKKLVEETKQL 1068
Score = 46.6 bits (111), Expect = 9e-06
Identities = 34/199 (17%), Positives = 74/199 (37%), Gaps = 27/199 (13%)
Query: 19 LKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEH 78
LK E + LE+ ++ Q +ID Q + + +++ L+ + E
Sbjct: 909 LKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE------ITYSTET 962
Query: 79 ERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVA 138
E+LR +R+ E + + N++ + L ++ +R ++ + E
Sbjct: 963 EKLRSDVERLRMSEEEAKNA--------TNRVLS--LQEEIAKLRKELHQTQTEKKTIEE 1012
Query: 139 KVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKK 198
++ H+ E L L + L+ E N+ Q + + E K
Sbjct: 1013 WADKYKHETEQLVS---------ELKEQNTLLKTEKEELNRRIHDQAKEITETME--KKL 1061
Query: 199 QAEVNSVDLRISELQERLQ 217
E ++L +++ + R Q
Sbjct: 1062 VEETKQLELDLNDERLRYQ 1080
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 50.2 bits (120), Expect = 6e-07
Identities = 38/233 (16%), Positives = 93/233 (39%), Gaps = 15/233 (6%)
Query: 33 LGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERL-RRLRDRVEQQ 91
L ++ QA+ + ++ +++ LK+ E +H Q+ E L +L+ E
Sbjct: 849 LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908
Query: 92 ELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLK 151
L + + + + + +E + + E ++ +L QLE+ +
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 152 RGRTH-QPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRIS 210
R Q +++ + ++ + E QN +L ++R+ L + V+ + ++
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDI----LIMEDQNNKLTKERKLL---EERVSDLTTNLA 1021
Query: 211 ELQERLQRKRLLNQQLASQLNS------NINSSQHQLPPGKQQLVAQNSQLTS 257
E +E+ + L + S ++ S+ +L K++L ++S L
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHE 1074
Score = 50.2 bits (120), Expect = 7e-07
Identities = 28/214 (13%), Positives = 79/214 (36%), Gaps = 5/214 (2%)
Query: 30 ELTLGELEDMAVRQQAQIDS-QRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRV 88
E +L+ V +I + ++ ++Q + K+ + ++V+ L ++
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027
Query: 89 EQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLE 148
+ K ++ +++ +LE I+ + +L +A+++ +L+
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087
Query: 149 DLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLR 208
+ + A LE+ + K + + +E L ++A N + +
Sbjct: 1088 AQLAKKEEELQ--AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145
Query: 209 ISELQERLQ--RKRLLNQQLASQLNSNINSSQHQ 240
+L E L+ + L + + + S ++
Sbjct: 1146 KRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179
Score = 48.7 bits (116), Expect = 2e-06
Identities = 38/232 (16%), Positives = 93/232 (40%), Gaps = 23/232 (9%)
Query: 33 LGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHE-RLRRLRDRVEQQ 91
+ E E+ + + QA+ +Q + E++L + + Q + +++++ D +
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Query: 92 ELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLK 151
E + KL + + L+++L K + + EL +L+ +
Sbjct: 996 EDQNNKLTK---ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052
Query: 152 RGRTHQPSHPHLSAELENLRREL-----MYHNKLSEQQNVRLHQQRETLTKKQAEVNSVD 206
+ R ELE ++R+L H +++E Q ++ + + L KK+ E+ +
Sbjct: 1053 KSR----------QELEKIKRKLEGESSDLHEQIAELQA-QIAELKAQLAKKEEELQAAL 1101
Query: 207 LRISELQER---LQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQL 255
R+ + + +K + S L ++ S + ++Q + +L
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153
Score = 48.7 bits (116), Expect = 2e-06
Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 13/183 (7%)
Query: 27 EGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRR--- 83
+ +E + +L ++ + + +L E + L+ + ++ E E+++R
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
Query: 84 --LRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVE 141
D EQ ++ L+ Q+ + + + + LE + N K++ + +
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126
Query: 142 ELTHQLEDLKRGRTH-QPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQA 200
+L LE K R + LS ELE L+ EL E Q+E
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEELEALKTEL-------EDTLDTTATQQELRGSDYK 1179
Query: 201 EVN 203
+ +
Sbjct: 1180 DDD 1182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 1e-06
Identities = 51/320 (15%), Positives = 95/320 (29%), Gaps = 85/320 (26%)
Query: 10 NRPYPSSSTLKAADLL----TEGVELTLGELED------MAVRQQAQIDSQRQLIAAKEQ 59
S TL+ L E V+ + E+ M+ + Q EQ
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 60 RLR-------FLKQHEARHQQVAAEHERLRRLRDRVEQQELKLR------K----LRALR 102
R R F K + +R Q + L LR + + + K L
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP---AKNVLIDGVLGSGKTWVALDVCL 172
Query: 103 GQVDQNKMNN----ISLS------SDLESIRALFNEKEKELCMAVAKVEELTHQLEDLK- 151
Q KM+ ++L + LE ++ L + + + ++ ++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 152 RGRTHQPSHPHLSA--ELENLR------------------RELMYHNKLSEQ--QNVRLH 189
R S P+ + L N++ R + LS ++ L
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 190 QQRETLTKKQAE---VNSVDLRISEL-------------------QERLQRKRLLNQQLA 227
TLT + + + +D R +L ++ L
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 228 SQLNSNINSSQHQLPPGKQQ 247
+L + I SS + L P + +
Sbjct: 353 DKLTTIIESSLNVLEPAEYR 372
Score = 48.3 bits (114), Expect = 2e-06
Identities = 52/329 (15%), Positives = 94/329 (28%), Gaps = 86/329 (26%)
Query: 6 MTLRNRPYPSSSTLKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLK 65
+ L+N P + LL + ++ D + + +I S + + R LK
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHS------IQAELRRLLK 239
Query: 66 QHEARHQQVAAEHER-LRRLRDRVEQQELKLRKLRALRGQV-------DQNKMNNISLSS 117
+E L L + V+ + A + + +S ++
Sbjct: 240 SKP---------YENCLLVLLN-VQNAKA----WNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 118 ----DLESIRALFNEKE-KELCMAVAKVEELTHQLEDLKR-GRTHQPSHPHLSAEL---- 167
L+ E K L K L + +DL R T P + AE
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLL---LKY--LDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 168 ----ENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSV---DLRISE--LQ----- 213
+N + + +KL+ L+ +K + SV I L
Sbjct: 341 LATWDNWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 214 ----------ERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINNV 263
+L + L+ +Q S +P +L + + H + V
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQP--------KESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 264 NSLFRSMTSSNIAAVAPYLHVPSKPNLDN 292
+ NI P LD
Sbjct: 451 DHY-------NIPKTFDSDD-LIPPYLDQ 471
Score = 42.1 bits (98), Expect = 2e-04
Identities = 28/254 (11%), Positives = 77/254 (30%), Gaps = 37/254 (14%)
Query: 78 HERLRRLRDRVEQQELKLRKLRALRGQVDQNK-MNNISLSSDLESIRALFNEKEKELCMA 136
H + + + + + + V ++ ++N + +++ +++E + +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDIL----SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM 56
Query: 137 VAKVEELTHQLEDLKR-----------GRTHQPSHPHLSAELENLRRELMYHNKLSEQQN 185
T +L + ++ L + ++ +R+ ++ +Q
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 186 VRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLP-PG 244
RL+ + K V+ + +L++ L +L N + G
Sbjct: 117 DRLYNDNQVFAKYN--VSRLQP-YLKLRQALL-----------ELRPAKNVLIDGVLGSG 162
Query: 245 KQQLVAQNSQLTSAHINNVNSLF-----RSMTSSNIAAVAPYLHVPSKPNLDNTHAIFQN 299
K + +F + + + L PN + N
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 300 QR-RIESGHNQLNK 312
+ RI S +L +
Sbjct: 223 IKLRIHSIQAELRR 236
Score = 37.1 bits (85), Expect = 0.008
Identities = 34/238 (14%), Positives = 73/238 (30%), Gaps = 70/238 (29%)
Query: 30 ELTLGELEDM--AVRQQAQIDSQRQLIAAK--EQRLRFL------KQHEARHQQVAAEHE 79
+++DM ++ + +ID +I +K L KQ E + V
Sbjct: 32 NFDCKDVQDMPKSILSKEEID---HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 80 R-----LRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELC 134
+ ++ Q + R R +++ N D + + +
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQR-----DRLYN-----DNQVFAKYNVSRLQ--- 135
Query: 135 MAVAKVEELTHQLEDLKR------------GRTHQPSHPHLSAE-LENLRRELMYHNK-- 179
+L L +L+ G+T ++ + + + + K
Sbjct: 136 ----PYLKLRQALLELRPAKNVLIDGVLGSGKTW------VALDVCLSYKVQCKMDFKIF 185
Query: 180 ------------LSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQ 225
+ E L+Q T + +++ LRI +Q L +RLL +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSK 241
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 3e-04
Identities = 46/279 (16%), Positives = 88/279 (31%), Gaps = 96/279 (34%)
Query: 13 YPSSSTLKAADLLTEGVELTLGELEDM-AVRQQAQID-SQRQLIAAKEQRLRFLKQHEAR 70
YP++S +L + +E G M ++ + +Q Q+ + + H
Sbjct: 314 YPNTSL--PPSILEDSLENNEGVPSPMLSIS-----NLTQEQV----QDYVNKTNSHLPA 362
Query: 71 HQQV------AAEH-------ERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSS 117
+QV A++ + L L L LRK +A G +DQ+
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLN-------LTLRKAKAPSG-LDQS--------- 405
Query: 118 DLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSH-PHLSAELENLRRELMY 176
R F+E++ + V P H L + + ++L
Sbjct: 406 -----RIPFSERKLKFSNRFLPVAS---------------PFHSHLLVPASDLINKDL-- 443
Query: 177 HNKLSEQQNVRLHQQR------ETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQL 230
+ NV + + +T DLR L + +R+++ + +
Sbjct: 444 -----VKNNVSFNAKDIQIPVYDTFDGS-------DLR--VLSGSI-SERIVDCIIRLPV 488
Query: 231 N---SNINSSQHQLP--PGKQ----QLVAQNSQLTSAHI 260
+ + H L PG L +N T +
Sbjct: 489 KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV 527
Score = 41.2 bits (96), Expect = 4e-04
Identities = 37/230 (16%), Positives = 75/230 (32%), Gaps = 66/230 (28%)
Query: 101 LRGQVDQNKMNNISLSSDL--ESIRALFNEKEKELCMAVAKVEELTH-QLED-LKRGRTH 156
+R N SL + +S+ N + M + LT Q++D + + +H
Sbjct: 308 VRCY---EAYPNTSLPPSILEDSLE---NNEGVPSPMLS--ISNLTQEQVQDYVNKTNSH 359
Query: 157 QPSHPHLSAELENLRREL--------MYHNKLSEQQNVRLH---------QQRETLTKKQ 199
P+ + L N + L +Y L N+ L Q R ++++
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYG--L----NLTLRKAKAPSGLDQSRIPFSERK 413
Query: 200 AEVNSVDLRISE------LQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLV---- 249
+ ++ L ++ L L+N+ L N + N+ Q+P V
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASD---LINKDLVKN-NVSFNAKDIQIP------VYDTF 463
Query: 250 -AQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYLHVPSKPNLDNTHAI-F 297
+ ++ S I + + + + TH + F
Sbjct: 464 DGSDLRVLSGSI--SERIVDCIIRLPV-------KWETTTQFKATHILDF 504
Score = 38.9 bits (90), Expect = 0.002
Identities = 49/317 (15%), Positives = 88/317 (27%), Gaps = 90/317 (28%)
Query: 31 LTLGELE-DMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHE---------R 80
L+ G LE + V A + + +F K + AA+ E +
Sbjct: 11 LSHGSLEHVLLV-------PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 81 -LRRLRDRVEQQELKLRK--LRALRGQVDQNKM--NNI-SLSSDLESIRALFNEKEKELC 134
L + VE ++ L + + + N+I +L++ L K KEL
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 135 MAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLH----- 189
+ + SA + N +L
Sbjct: 124 KNYITARIMAKR----------PFDKKSNSALFRA-----------VGEGNAQLVAIFGG 162
Query: 190 QQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLV 249
Q + D EL++ Q +L L I S L +L+
Sbjct: 163 Q------------GNTDDYFEELRDLYQTYHVLVGDL-------IKFSAETL----SELI 199
Query: 250 AQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYL-HVP-SKP---------------NLDN 292
+N + + + + YL +P S P L
Sbjct: 200 RTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 293 THAIFQNQRRIESGHNQ 309
T ++ + +GH+Q
Sbjct: 259 TPGELRSYLKGATGHSQ 275
Score = 36.2 bits (83), Expect = 0.016
Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 50/157 (31%)
Query: 1 MSGHDMTLRNRPYPSS----STLKA-ADLLT--EGVELTL--GELEDMAVRQQAQIDSQR 51
+GH S + L + AD+++ VE+ G +AV + S
Sbjct: 1759 FAGH-----------SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 52 QLIAAKEQRLRFLKQHEARH---QQVAAEHERLRRLRDRVE--------QQ-----ELKL 95
+IA R+ EA ++V L VE QQ +L
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWL------VEIVNYNVENQQYVAAGDL-- 1859
Query: 96 RKLRALRGQVDQNKMNNISL-----SSDLESIRA-LF 126
R L + ++ K+ I + S LE + LF
Sbjct: 1860 RALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 40.9 bits (96), Expect = 3e-04
Identities = 10/70 (14%), Positives = 22/70 (31%)
Query: 182 EQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQL 241
+ + + E + + S D +I EL E + + +L QL +
Sbjct: 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPC 60
Query: 242 PPGKQQLVAQ 251
++
Sbjct: 61 QDTTANKISP 70
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 37.6 bits (87), Expect = 0.004
Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
Query: 139 KVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNK----LSEQQNVRLHQQRET 194
KV++ LED+ + + ++ ++ + + ++ + E
Sbjct: 35 KVDKDLQSLEDILH--QVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEE 92
Query: 195 LTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQH 239
+ K +A + + D I LQE L ++ Q
Sbjct: 93 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 137
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.5 bits (81), Expect = 0.012
Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 49/125 (39%)
Query: 69 ARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNE 128
A+ ++ E E +R+ R E+Q +L++L D S
Sbjct: 75 AQADRLTQEPESIRKWR---EEQRKRLQEL-------------------DAAS-----KV 107
Query: 129 KEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRL 188
E+E E+ LE+ + ++ Q +E + N+++++
Sbjct: 108 MEQEW------REKAKKDLEEWNQRQSEQ---------VEKNKIN----NRIADKA---F 145
Query: 189 HQQRE 193
+QQ +
Sbjct: 146 YQQPD 150
Score = 33.2 bits (75), Expect = 0.067
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Query: 159 SHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQR 218
L+ E E++R K E+Q RL + + E R ++ +
Sbjct: 76 QADRLTQEPESIR-------KWREEQRKRLQELDAASKVMEQE-----WREKAKKDLEEW 123
Query: 219 KRLLNQQLASQLNSN 233
+ ++Q+ +N
Sbjct: 124 NQRQSEQVEKNKINN 138
Score = 27.0 bits (59), Expect = 6.3
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 35 ELEDMAVRQQAQIDSQR--QLIAAKEQRLRFLKQHEA 69
+LE+ RQ Q++ + IA K F +Q +A
Sbjct: 119 DLEEWNQRQSEQVEKNKINNRIADKA----FYQQPDA 151
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 36.2 bits (84), Expect = 0.013
Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 8/146 (5%)
Query: 20 KAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFL--KQHEARHQQVAAE 77
KA E + + L + +AV Q ++L + +L + V A+
Sbjct: 865 KAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAK 924
Query: 78 HERLRRLRDRVEQQELKLR-KLRALRGQVDQNKMNNI-----SLSSDLESIRALFNEKEK 131
+ L + E + L ++ Q+ + N + + +
Sbjct: 925 LKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAE 984
Query: 132 ELCMAVAKVEELTHQLEDLKRGRTHQ 157
+ E ++EDL H
Sbjct: 985 TYKNTLLAELERLQKIEDLHHHHHHH 1010
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 33.8 bits (77), Expect = 0.064
Identities = 11/122 (9%), Positives = 43/122 (35%), Gaps = 4/122 (3%)
Query: 122 IRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLS 181
++ ++EK + + +++ + D T + +L +++ ++ +
Sbjct: 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTST--TMYQYVNMIDNKLVKTQKQRKDNDIIL 144
Query: 182 EQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQL 241
+ N + + K N++ + L+ + Q+L + + + + +
Sbjct: 145 SEYNTEMELHYNYI--KDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCRSPC 202
Query: 242 PP 243
Sbjct: 203 VA 204
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A*
3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Length = 727
Score = 33.5 bits (77), Expect = 0.11
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 35 ELEDMAVRQQAQIDSQRQLI-------AAKEQRLRFLK--QHEARHQQVAAEHERLRRLR 85
+E+ A R QA+IDS RQ + E L LK +Q +L +LR
Sbjct: 444 RIEEAAARTQARIDSGRQPLIGVNKYRLEHEPPLDVLKVDNSTVLAEQK----AKLVKLR 499
Query: 86 DRVEQQELKLRKLRALR 102
+ +++K L +
Sbjct: 500 AERDPEKVK-AALDKIT 515
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.15
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 25/54 (46%)
Query: 89 EQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAV-AKVE 141
E+Q LK KL+A ++ L +D +S AL A+ A +E
Sbjct: 18 EKQALK--KLQA-----------SLKLYAD-DSAPAL----------AIKATME 47
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic
aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo
sapiens} PDB: 2xiq_A* 3bic_A
Length = 762
Score = 32.8 bits (75), Expect = 0.15
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 14/77 (18%)
Query: 35 ELEDMAVRQQAQIDSQRQLI-------AAKEQRLRFLK--QHEARHQQVAAEHERLRRLR 85
+E+ A R+QA+IDS ++I KE + L R++Q+ E+L++++
Sbjct: 457 RIEECAARRQARIDSGSEVIVGVNKYQLEKEDTVEVLAIDNTSVRNRQI----EKLKKIK 512
Query: 86 DRVEQQELKLRKLRALR 102
+Q + R L AL
Sbjct: 513 SSRDQALAE-RCLAALT 528
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 31.6 bits (71), Expect = 0.28
Identities = 21/168 (12%), Positives = 59/168 (35%), Gaps = 14/168 (8%)
Query: 73 QVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKE 132
+++ + + L + ++ L K + ++L + +++ ++ E+
Sbjct: 12 EISHLDKEIDSLEPLIREKRKDLDKALN---DKEAKNKAILNLEEEKLALKLQVSKNEQT 68
Query: 133 LCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQR 192
L AK+ + ++ ++K R EL +L E + S Q N + +
Sbjct: 69 LQDTNAKIASIQKKMSEIKSER-----------ELRSLNIEEDIAKERSNQANREIENLQ 117
Query: 193 ETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQ 240
+ +K + + + EL++ L + + +
Sbjct: 118 NEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKK 165
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 30.4 bits (69), Expect = 0.76
Identities = 21/147 (14%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 83 RLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEE 142
+D E + ++A V Q + I+ S +E + E+ + EE
Sbjct: 127 SYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVE--LSRMFEEVSGSIQYKKEYEE 184
Query: 143 LTHQLEDLKRGRT-HQPSHPHLSAELENLRRELM----YHNKLSEQQNVR-----LHQQR 192
L ++E L + T + + EL+ + + + S ++ +
Sbjct: 185 LKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNET 244
Query: 193 ETLTKKQAEVNSVDLRISEL-QERLQR 218
E L ++ ++ + ++ ++R +
Sbjct: 245 EQLKAEEKKILNQ---FLKIKKKRKEL 268
Score = 30.4 bits (69), Expect = 0.80
Identities = 12/109 (11%), Positives = 33/109 (30%), Gaps = 8/109 (7%)
Query: 46 QIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQV 105
Q D ++ + + R ++ Q E ++ + ++ R + G++
Sbjct: 151 QGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGEL 210
Query: 106 DQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGR 154
K + + + + E + ++ E LK
Sbjct: 211 KTYKSPGLEVLFQGPRGSRYDEAEGRF--------EVINNETEQLKAEE 251
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 30.2 bits (68), Expect = 0.92
Identities = 11/57 (19%), Positives = 18/57 (31%)
Query: 190 QQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQ 246
+ E + K +A + + D I LQE L ++ Q Q
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQ 57
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG
structure initiative; 2.35A {Corynebacterium glutamicum
atcc 13032} SCOP: c.56.8.1
Length = 319
Score = 29.8 bits (66), Expect = 1.3
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 8 LRNRPYPSSSTLKAADLLTE--GVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLK 65
+ PYP+++ K + + + L L LE A + Q+ + + R +
Sbjct: 205 VSASPYPAATL-KLLQSIADSADLNLPLLALERDAEKVHRQLM---EQTEESSEIQRVVG 260
Query: 66 QHEARHQQVAAEHERLRRLRDRVEQQEL 93
E ++ + + EL
Sbjct: 261 ALEQQYDSELERYRNRHPQAVMPGESEL 288
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 29.8 bits (66), Expect = 1.5
Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 2/133 (1%)
Query: 20 KAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHE 79
+ A +T + + E + Q+A+ +RQ I + ++ + ++ E
Sbjct: 659 QLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILD-QSEAEKARKELLELEAMSMAVE 717
Query: 80 RLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAK 139
+ E + R + K +++ ++ E R +E EL A A+
Sbjct: 718 STGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVK-KVREMELIYARAQ 776
Query: 140 VEELTHQLEDLKR 152
+E + + L
Sbjct: 777 LELEVSKAQQLAN 789
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 29.5 bits (65), Expect = 1.8
Identities = 28/238 (11%), Positives = 79/238 (33%), Gaps = 15/238 (6%)
Query: 35 ELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERL--RRLRDRVEQQE 92
EL+ + + Q+ E R + E + + AA R D + Q +
Sbjct: 6 ELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLEKQDWEHAANDVSFATIRFHDLLSQLD 65
Query: 93 LKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKR 152
+ + + Q+ + +++ F E ++ M + + ++ + +
Sbjct: 66 DQYSRFSLENNFLLQHNIRKSK-----RNLQDNFQEDPIQMSMIIYSCLKEERKILENAQ 120
Query: 153 GRTHQPSHPHLSA-------ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSV 205
S S EL++ R + E + L ++ K + +
Sbjct: 121 RFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 180
Query: 206 DLRISEL-QERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINN 262
+ + + + ++++LL +++ L++ H++ + L + +
Sbjct: 181 EHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVE 238
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase,
detoxification; HET: SPD; 2.25A {Sphingomonas
paucimobilis}
Length = 176
Score = 28.4 bits (63), Expect = 2.1
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 13/48 (27%)
Query: 79 ERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALF 126
L RL R Q+L KL A VD+ + +++
Sbjct: 22 SDLDRLASRAAIQDLYSDKLIA----VDKR---------QEGRLASIW 56
>2rfr_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP:
d.17.4.28
Length = 155
Score = 28.2 bits (63), Expect = 2.6
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 13/50 (26%)
Query: 79 ERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNE 128
RLR L DR E +EL R D D E++ L+ E
Sbjct: 10 ARLRLLEDREEIRELIARYGPL----ADSG---------DAEALSELWVE 46
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein
structure initiativ midwest center for structural
genomics; 2.97A {Streptomyces avermitilis}
Length = 250
Score = 28.6 bits (63), Expect = 2.6
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 8 LRNRPYPSSSTLKAADLLTE--GVELTLGELEDMAVRQQAQIDSQ-------RQLIAAKE 58
+ P P ++ L + L + V + LGEL + A Q +D + + + E
Sbjct: 186 VSQPPNPKAT-LALLNRLEDLIDVRIPLGELPEDARAWQVGVDQLAAEDSEVAEYVQSLE 244
Query: 59 QR 60
+
Sbjct: 245 EA 246
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 28.7 bits (63), Expect = 3.0
Identities = 35/201 (17%), Positives = 76/201 (37%), Gaps = 13/201 (6%)
Query: 27 EGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRD 86
+ V+ +LE +++ ++++ E + + EA+ Q + + E +
Sbjct: 350 DEVKKAQKDLEKSLRKRE---HLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINK 406
Query: 87 RVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQ 146
+ + + L+G + +S DL+ F+E + +K EE
Sbjct: 407 EANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKA 466
Query: 147 LEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVD 206
L+ + P +++ENL L N+ +N + T K E + D
Sbjct: 467 LKGSVKDLGINPE---WISKVENLNAAL---NEFKNGKNKDF--SKVTQAKSDLENSVKD 518
Query: 207 LRISELQERLQRKRLLNQQLA 227
+ I+ Q+ + LNQ ++
Sbjct: 519 VIIN--QKVTDKVDNLNQAVS 537
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering,
endoplasmic reticulum, ER-golgi transport, membrane,
phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Length = 706
Score = 28.7 bits (63), Expect = 3.2
Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 5/173 (2%)
Query: 110 MNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSH----PHLSA 165
M +++ DL +I + + E +K++ L L + A
Sbjct: 3 MGSMNGIDDLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDIIEVGA 62
Query: 166 ELENLRRELMYHNKLSEQQNVR-LHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQ 224
+E L + + L + + Q+ + +++S + ++ EL E+ + L+
Sbjct: 63 SVEGLEQLRAKYGDLQILNKLEKVAVQQTQMQAGVDKLDSFERQLDELAEQPPDQFTLDD 122
Query: 225 QLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINNVNSLFRSMTSSNIAA 277
A + A ++L S N + ++N +
Sbjct: 123 VKALHSKLTSVFATVPQINNIDSQYAAYNKLKSKVTGKYNDVIIQRLATNWSN 175
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein,
unknown function; 1.80A {Homo sapiens} PDB: 2hww_A
2hwx_A
Length = 186
Score = 27.7 bits (61), Expect = 4.5
Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 115 LSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAEL-ENLRRE 173
L S+ L ++ L + + + E L+ L +G+ + + E R+
Sbjct: 22 FIDHLASLARLLESRKYILVVPLIVINE----LDGLAKGQETDHRAGGYARVVQEKARKS 77
Query: 174 LMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRK 219
+ + + E ++ L T + E+ S+ R ++ +L
Sbjct: 78 IEFLEQRFESRDSCLRAL----TSRGNELESIAFRSEDITGQLGNN 119
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 27.8 bits (62), Expect = 5.5
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 181 SEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKR-LLNQQLASQLNSNINSSQH 239
S Q L+ ++ L QA++ + QR L Q+ S +N+++
Sbjct: 65 STTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSL--DTLNTAKA 122
Query: 240 QLPPGKQQLVAQNSQLTSAHIN 261
L K ++ + A I
Sbjct: 123 TLNNAKAEMDVVQENIKQAEIE 144
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
1ja3_A 1p1z_D
Length = 203
Score = 27.2 bits (60), Expect = 5.6
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 183 QQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLP 242
Q N + ETL L+E + + ++ + +++ I QH
Sbjct: 7 QYNQHKQETNETLNHHNCSNMQRA---FNLKEEMLTNKSIDCRPSNETLEYIKGEQHDRW 63
Query: 243 PGKQQLVAQNSQLTS 257
K + V +S+ T
Sbjct: 64 DSKTKTVLDSSRDTG 78
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 27.9 bits (63), Expect = 5.8
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 72 QQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLS 116
+++A E ERLR LR+R+ + ++ L G ++ N +++S
Sbjct: 280 EEMATEMERLRGLRNRLWNGIKDIEEVY-LNGDLEHGAPNILNVS 323
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase,
actin-bindi protein binding, cytoskeleton regulator;
2.70A {Drosophila melanogaster}
Length = 190
Score = 26.9 bits (59), Expect = 6.9
Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 49 SQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELK---LRKLRALRGQV 105
+LI Q++ LK+ + + + ++RL + ++++ K R V
Sbjct: 16 KMDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAV 75
Query: 106 DQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTH 156
+SLS L + +++E +K + L Q+E+ +R ++
Sbjct: 76 GNITSLLLSLSERLAQTESSLETRQQERGALESKRDLLYEQMEEAQRLKSD 126
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris,
coiled-coil, structur genomics, PSI-2, protein
structure initiative; 2.00A {Xanthomonas campestris PV}
Length = 78
Score = 25.5 bits (56), Expect = 9.1
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 30 ELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLR 62
E L EL + + +LI + L
Sbjct: 27 EQALTELSEALADARLTGARNAELIRHLLEDLG 59
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein;
unknown function; 2.60A {Mycobacterium tuberculosis}
Length = 351
Score = 27.0 bits (59), Expect = 9.3
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 8 LRNRPYPSSSTLKAADLLTE--GVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLK 65
L YP+++ + + + ++L L L + A QA+ID + + A + + +
Sbjct: 245 LTQTDYPAAAQ-ALLEQVAKTGSLQLPLAVLAEAAAEVQAKID---EQVQASAEVAQVVA 300
Query: 66 QHEARHQQVAAEHER 80
E ++ E
Sbjct: 301 ALERQYDAFIDAQEN 315
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 27.0 bits (61), Expect = 9.4
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 72 QQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLS 116
+ E ERLRRLRDR+ LK+ + L G ++ NN+++
Sbjct: 252 MEWREEAERLRRLRDRIIDNVLKIEESY-LNGHPEKRLPNNVNVR 295
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.127 0.341
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,667,496
Number of extensions: 269931
Number of successful extensions: 1227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1133
Number of HSP's successfully gapped: 213
Length of query: 332
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 238
Effective length of database: 4,077,219
Effective search space: 970378122
Effective search space used: 970378122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.5 bits)