RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7684
         (332 letters)



>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923
           {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 269

 Score = 35.4 bits (81), Expect = 0.006
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 7   TLRNRPYP--SSSTLKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFL 64
            +   PYP  +   L++       + L L  LE  A +   Q+    +      +  R +
Sbjct: 199 YVSASPYPAATLKLLQSIADSA-DLNLPLLALERDAEKVHRQLM---EQTEESSEIQRVV 254

Query: 65  KQHEARHQQVAAEHERLR 82
              E   QQ  +E ER R
Sbjct: 255 GALE---QQYDSELERYR 269


>d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus
           subtilis [TaxId: 1423]}
          Length = 234

 Score = 30.8 bits (68), Expect = 0.16
 Identities = 21/192 (10%), Positives = 58/192 (30%), Gaps = 11/192 (5%)

Query: 109 KMNNISLSSDLESIRALFNEKEKELCMAVAKVE--------ELTHQLEDLKRGRTHQPSH 160
           K+    +++D+  I+ +       + + +   +            ++ED           
Sbjct: 37  KVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMED-AGLGIELVEQ 95

Query: 161 PHLSAELENLRRELMY--HNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQR 218
           P    +L  L++         ++++      Q  E L  + A++ ++ L  +      ++
Sbjct: 96  PVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEK 155

Query: 219 KRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINNVNSLFRSMTSSNIAAV 278
              + +    +                    A    +T    +    L   + +  I   
Sbjct: 156 INAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYS 215

Query: 279 APYLHVPSKPNL 290
              + +P KP L
Sbjct: 216 GSTISMPGKPGL 227


>d1sraa_ a.39.1.3 (A:) C-terminal (EC) domain of
           BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 151

 Score = 27.3 bits (60), Expect = 1.7
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 1/90 (1%)

Query: 42  RQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRAL 101
               + D    L+  K Q+LR  K HE   +  A +H      RD  +   + +  +   
Sbjct: 24  VTLYERDEDNNLLTEK-QKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQ 82

Query: 102 RGQVDQNKMNNISLSSDLESIRALFNEKEK 131
            GQ+DQ+ ++     ++L  +RA     E 
Sbjct: 83  FGQLDQHPIDGYLSHTELAPLRAPLIPMEH 112


>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
           {Burkholderia glumae [TaxId: 337]}
          Length = 280

 Score = 26.2 bits (57), Expect = 6.2
 Identities = 21/190 (11%), Positives = 57/190 (30%), Gaps = 3/190 (1%)

Query: 40  AVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLR 99
             +           +     +L   ++     + +    E       R ++ +L+  ++ 
Sbjct: 87  LAQLPGDGAVLGDKLDPAAMQLALDQRAALADRTLGEWAEPFFGDEQRRQRHDLERIRIA 146

Query: 100 ALRGQVDQNKMNNI-SLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQP 158
                  + K   + +L + L                AV K+ +L        + R    
Sbjct: 147 NDTTLSPEQKAARLAALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQI- 205

Query: 159 SHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQR 218
               L  E      ++   ++  + +      +R+ +  +       D RI++L+++   
Sbjct: 206 -AQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFT 264

Query: 219 KRLLNQQLAS 228
                 + AS
Sbjct: 265 APGEAIRAAS 274


>d1xqoa_ a.96.1.6 (A:) 8-oxoguanine DNA glycosylase, AgoG
           {Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 253

 Score = 25.9 bits (57), Expect = 7.1
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 164 SAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLN 223
             E+ +L R+ + + + S        + R    KK+A       +  +    L+   L  
Sbjct: 77  QLEVIDLCRDFLKYIETS-PFLKIGVEAR----KKRAL------KACDYVPNLEDLGLTL 125

Query: 224 QQLASQLNSNINS 236
           +QL+  + +    
Sbjct: 126 RQLSHIVGARREQ 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.127    0.341 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,076,520
Number of extensions: 47029
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 44
Length of query: 332
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,226,816
Effective search space: 301796736
Effective search space used: 301796736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)