BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7685
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 12 TCTTLAVCS-LSFVLYCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
+C + VC L +FA T+SD +TAA K LY VQEK+GI+N G
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG 171
Query: 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
+YAL+DYE N DEL K G+C+ ++ + DE+E EWWW++LN+KEGYVPRNLLGLYPR+
Sbjct: 172 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI 231
Query: 131 QP 132
+P
Sbjct: 232 KP 233
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 12 TCTTLAVCS-LSFVLYCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
+C + VC L +FA T+SD +TAA K LY VQEK+GI+N G
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG 171
Query: 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
+YAL+DYE N DEL K G+C+ ++ + DE+E EWWW++LN+KEGYVPRNLLGLYPR+
Sbjct: 172 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI 231
Query: 131 QP 132
+P
Sbjct: 232 KP 233
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 3/123 (2%)
Query: 12 TCTTLAVCSLSFVLY--CIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNN 69
+C +C ++ V + IFATT SD TA K L V++ +G++N+
Sbjct: 96 SCNDTVIC-MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNS 154
Query: 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR 129
GAVYAL+DY A DELSF+ GE + VLR+ E +WWW+ L+ +EGYVPRN GL+PR
Sbjct: 155 GAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR 214
Query: 130 VQP 132
V+P
Sbjct: 215 VKP 217
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
V A+YDY ANN DELSF G+ I V+ K D + WW ++N G P N + +
Sbjct: 21 VIAMYDYAANNEDELSFSKGQLINVMNKDDPD---WWQGEINGVTGLFPSNYVKMTTDSD 77
Query: 132 PS 133
PS
Sbjct: 78 PS 79
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V ALYDY+A DEL+FK G+ IIV +K + WW +LN K G+VP N +
Sbjct: 7 VKALYDYDAQTGDELTFKEGDTIIVHQK---DPAGWWEGELNGKRGWVPANYV 56
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V ALYDY+A DEL+FK G+ IIV +K + WW +LN K G+VP N +
Sbjct: 6 VKALYDYDAQTGDELTFKEGDTIIVHQK---DPAGWWEGELNGKRGWVPANYV 55
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
V A+YDY ANN DELSF G+ I V+ K D +WW ++N G P N + +
Sbjct: 37 VIAMYDYAANNEDELSFSKGQLINVMNKDDP---DWWQGEINGVTGLFPSNYVKM 88
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
A YD++A DELSFK G+ + VL +E ++ W+ ++LN K+G++P+N + + P
Sbjct: 14 AKYDFKATADDELSFKRGDILKVLN--EECDQNWYKAELNGKDGFIPKNYIEMKP 66
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
A YD++A DELSFK G+ + VL +E ++ W+ ++LN K+G++P+N + + P
Sbjct: 5 AKYDFKATADDELSFKRGDILKVL--NEECDQNWYKAELNGKDGFIPKNYIEMKP 57
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V AL+D++ EL F+ G+ I V+ D N WW + + G PRN +
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRNYV 210
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
V +YDY A N DEL+F G+ I VL K D + WW +++ + G P N + L +
Sbjct: 5 VIGMYDYTAQNDDELAFSKGQIINVLNKEDPD---WWKGEVSGQVGLFPSNYVKLTTDMD 61
Query: 132 PS 133
PS
Sbjct: 62 PS 63
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 127
V AL+D+ + EL+FK G+ I ++ K D N WW +LNN+ G P N + Y
Sbjct: 7 VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVAPY 59
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 47.0 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 66 ILNNGAVY---ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
++++G+V AL+D+ + EL FK G+ I V+ D REWWW ++ + EG+ P +
Sbjct: 24 LISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVM---DATNREWWWGRVADGEGWFPAS 80
Query: 123 LLGL 126
+ L
Sbjct: 81 FVRL 84
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LLGLYPR 129
ALYD A + DELSF+ G+ + VL + + WW L+ ++G VP N L+G+Y +
Sbjct: 8 ALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYDK 67
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
V ALYDYEA + ++LSF+ G+ ++VL E EWW ++ KEGY+P N +
Sbjct: 5 VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYVA 56
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 65 GILNNGA---VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYV 119
G + +G V ALYDYEA + ++LSF+ G+ ++VL E EWW ++ KEGY+
Sbjct: 1 GAMGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYI 56
Query: 120 PRN 122
P N
Sbjct: 57 PSN 59
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALYD+EA DEL F++GE + VL D + WW +L+NK G P N
Sbjct: 10 ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 55
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
V ALYDYEA + ++LSF+ G+ ++VL E EWW ++ KEGY+P N +
Sbjct: 28 VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYV 78
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALYD+EA DEL F++GE + VL D + WW +L+NK G P N
Sbjct: 7 ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 52
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 45.8 bits (107), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 66 ILNNGAVY---ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
++++G+V AL+D+ + EL FK G+ I V D REWWW ++ + EG+ P +
Sbjct: 61 LISDGSVVCAEALWDHVTXDDQELGFKAGDVIEVX---DATNREWWWGRVADGEGWFPAS 117
Query: 123 LLGL 126
+ L
Sbjct: 118 FVRL 121
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 65 GILNNGA----VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGY 118
GI G+ V ALYDYEA + ++LSF+ G+ ++VL E EWW ++ KEGY
Sbjct: 1 GIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGY 56
Query: 119 VPRN 122
+P N
Sbjct: 57 IPSN 60
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALYD+EA DEL F++GE + VL D + WW +L+NK G P N
Sbjct: 6 ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 51
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 10/66 (15%)
Query: 65 GILNNGA----VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGY 118
GI G+ V ALYDYEA + ++LSF+ G+ ++VL E EWW ++ KEGY
Sbjct: 1 GIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGY 56
Query: 119 VPRNLL 124
+P N +
Sbjct: 57 IPSNYV 62
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 127
V AL+D+ + EL+FK G+ I ++ K D N WW +LNN+ G P N + Y
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVCPY 57
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALYD+EA DEL F++GE + VL D + WW +L+NK G P N
Sbjct: 8 ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 53
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALY++ +L+FK G+ I +L+K D ++ +WW + N KEG P N +
Sbjct: 8 ALYNFAGEQPGDLAFKKGDVITILKKSD-SQNDWWTGRTNGKEGIFPANYV 57
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
V ALYDYEA + ++LSF+ G+ ++VL E EWW ++ KEGY+P N +
Sbjct: 3 VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYVA 54
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 127
V AL+D+ + EL+FK G+ I ++ K D N WW +LNN+ G P N + Y
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVCPY 57
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
A D++A DELSFK G+ + VL +E+++ W+ ++LN K+G++P+N + +
Sbjct: 5 AKVDFKATADDELSFKRGDILKVLN--EESDQNWYKAELNGKDGFIPKNYIEM 55
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 66 ILNNGAVY---ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
++++G+V AL+D+ + EL FK G+ I V+ D REWWW ++ + EG+ P +
Sbjct: 30 LISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVM---DATNREWWWGRVADGEGWFPAS 86
Query: 123 LLGL 126
+ L
Sbjct: 87 FVRL 90
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRN 122
V ALYDY AN +DEL+ G+ I V K +E +WW+ + +EGY P N
Sbjct: 9 VVALYDYTANRSDELTIHRGDIIRVFFKDNE---DWWYGSIGKGQEGYFPAN 57
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V ALYDYE DELSF G I +L K ++++ +W + N + G P L+
Sbjct: 11 VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A
Herpesviral Ligand
Length = 65
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 122
V ALY Y+ + D+LSFK GE + VL E EWW +K L KEG++P N
Sbjct: 10 VVALYPYDGIHPDDLSFKKGEKMKVL----EEHGEWWKAKSLLTKKEGFIPSN 58
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
ALYDYEA T++LSFK GE ++ + E +WW ++ K GY+P N +
Sbjct: 32 ALYDYEARTTEDLSFKKGERFQII---NNTEGDWWEARSIATGKSGYIPSNYV 81
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
ALY + + +L F+ G+ I +L+K D ++ +WW ++N +EG P N + L
Sbjct: 8 ALYSFAGEESGDLPFRKGDVITILKKSD-SQNDWWTGRVNGREGIFPANYVEL 59
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 65 GILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
G L + ALY Y+A +TDELSF + I +++ E+ WW +L K+G P N
Sbjct: 1 GPLGSPQCKALYAYDAQDTDELSFNANDIIDIIK---EDPSGWWTGRLRGKQGLFPNN 55
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRNLL 124
V ALYD+EA +EL+FK GE IIVL D N WW N++ G P N +
Sbjct: 20 VRALYDFEAVEDNELTFKHGEIIIVLDDSDAN----WWKGENHRGIGLFPSNFV 69
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 75 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNL 123
L+ Y N DEL+F+ GE I ++ K + E WW +LN KEG P N
Sbjct: 12 LFPYTGTNEDELTFREGEIIHLISK-ETGEAGWWKGELNGKEGVFPDNF 59
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 127
A++D+ EL+FK G+ I VL D + ++WWW +++++EG+ P + + L+
Sbjct: 15 AVWDHVTMANRELAFKAGDVIKVL---DASNKDWWWGQIDDEEGWFPASFVRLW 65
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
ALYDYEA T++LSFK GE ++ + E +WW ++ K GY+P N +
Sbjct: 10 ALYDYEARTTEDLSFKKGERFQII---NNTEGDWWEARSIATGKNGYIPSNYV 59
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
+ + V ALYDY + + D+LSF+ G+ ++VL E EWW ++ KEGY+P N +
Sbjct: 1 MEDIIVVALYDYVSWSPDDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYV 56
Query: 125 G 125
Sbjct: 57 A 57
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 10/57 (17%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK------EGYVPRNLL 124
L+D+++ +ELSF+ G+ V RK E +WWW+ L ++ +GYVP N L
Sbjct: 15 GLWDFKSRTDEELSFRAGDVFHVARK----EEQWWWATLLDEAGGAVAQGYVPHNYL 67
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V ALYD+EA +EL+FK GE I VL D N WW + + G P N +
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDAN---WWQGENHRGTGLFPSNFV 57
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V A+YD+EA +EL+FK GE I VL D N WW + + G P N +
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDPN---WWKGETHQGIGLFPSNFV 69
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
V ALYDY+ DELSFK G+ + L G+E+E+ W +L++ + LGLYP
Sbjct: 6 VRALYDYDGQEQDELSFKAGDELTKL--GEEDEQGWCRGRLDSGQ-------LGLYP 53
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
V ALYDY + + D+LSF+ G+ ++VL E EWW ++ KEGY+P N +
Sbjct: 6 VVALYDYVSWSPDDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYVA 57
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALYDY A N DEL G+ + V+ +G++ WW + N + G+VP + L
Sbjct: 13 ALYDYTAQNPDELDLSAGDILEVILEGEDG---WWTVERNGQRGFVPGSYL 60
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N + L P ++
Sbjct: 7 VIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKLLPPLE 63
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG 125
A+ DY A + +LSF GE I++LR + +WWW + GY+P N +G
Sbjct: 12 AIADYAATDETQLSFLRGEKILILR---QTTADWWWGERAGCCGYIPANHVG 60
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
ALY ++A DEL+ + G+ +I+ K +E WW+ LN K+G+ P
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEG---WWFGSLNGKKGHFP 55
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 42.7 bits (99), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
V ALYDYE DELSFK G+ + + DE+E+ W +L+N + +GLYP
Sbjct: 431 VRALYDYEGQEHDELSFKAGDELTKME--DEDEQGWCKGRLDNGQ-------VGLYP 478
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + DE++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPDEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + DE++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 4 VLALYDYQEKSPDEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 49
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding
Length = 68
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 12/70 (17%)
Query: 65 GILNNGA---VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGY 118
G L +GA V YD++A N+ ELS K + + VL ++ R+WW K+ + +EGY
Sbjct: 1 GPLGSGALKWVLCNYDFQARNSSELSVKQRDVLEVL----DDSRKWW--KVRDPAGQEGY 54
Query: 119 VPRNLLGLYP 128
VP N+L YP
Sbjct: 55 VPYNILTPYP 64
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N + L P
Sbjct: 8 VIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKLLP 61
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N + L P
Sbjct: 14 VIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKLLP 67
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 59 SVQEKLGILNNG-AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG 117
S E++G LN V ALY +E +L+F+ G+ I V+ K D + +WW KL + G
Sbjct: 6 SGHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTD-SHFDWWEGKLRGQTG 64
Query: 118 YVPRNLL 124
P N +
Sbjct: 65 IFPANYV 71
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 131
ALYDYEA D+LSF GE +L +E +WW ++ + GY+P N + +Q
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNS---SEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 66
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 131
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N + +Q
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 64
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 131
ALYDYEA D+LSF GE +L +E +WW ++ + GY+P N + +Q
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNS---SEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 64
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN---LLGLYPRV 130
ALYD+E N EL FK G+ I + + DEN W+ L+ G+ P N +L P
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMLHGHSGFFPINYVEILVALPHS 68
Query: 131 QPSA 134
PS+
Sbjct: 69 GPSS 72
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 131
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N + +Q
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 65
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALYD+E N EL FK G+ I + + DEN W+ L+ + G+ P N
Sbjct: 16 ALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMLHGQSGFFPIN 61
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLL 124
N +A+Y ++A N +ELS + + +L D EWW +++N K+GYVP N +
Sbjct: 13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYI 69
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
G+V AL+D++ EL F+ G+ I V+ D N WW + + G PRN +
Sbjct: 1 GSVQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRNYV 52
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N +
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYV 59
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
A +D+ A DELSF+ G+ + +L E++ W+ ++L+ KEG +P N + +
Sbjct: 5 AKHDFSATADDELSFRKGQILKILNM--EDDSNWYRAELDGKEGLIPSNYIEM 55
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++GYVP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGYVP 54
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N +
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYV 58
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 76 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
+DY+A + DEL+ GE I +RK D WW ++N + G P N +
Sbjct: 8 FDYQAQHDDELTISVGEIITNIRKEDGG---WWEGQINGRRGLFPDNFV 53
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 62 EKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
E + L+ + ALYD+E N EL F+ G+ I + + DEN W+ L+ + G+ P
Sbjct: 6 EFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDEN---WYEGXLHGQSGFFP 61
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N +
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVA 56
>pdb|2ROL|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding
Length = 64
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 9/56 (16%)
Query: 76 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRNLLGLYP 128
YD++A N+ ELS K + + VL ++ R+WW K+ + +EGYVP N+L YP
Sbjct: 14 YDFQARNSSELSVKQRDVLEVL----DDSRKWW--KVRDPAGQEGYVPYNILTPYP 63
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N +
Sbjct: 5 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVA 55
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 53
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N +
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVA 56
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 122
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N
Sbjct: 20 ALYDYEAITEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 67
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW +++N ++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKTEVNGRQGFVP 54
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N + L
Sbjct: 12 VIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKL 63
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
L+DY N DEL G+ I V+ +E E WW LNNK G P N +
Sbjct: 9 VLFDYSPQNEDELELIVGDVIDVI---EEVEEGWWSGTLNNKLGLFPSNFV 56
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRNLLGLYP 128
V +YD +A+N DEL+F GE IIV E ++EWW + ++G P + + +
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVT---GEEDQEWWIGHIEGQPERKGVFPVSFVHILS 69
Query: 129 RVQPSA 134
PS+
Sbjct: 70 DSGPSS 75
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V A+YDY + DELSF+ G I V++K D+ W+ +N G P N +
Sbjct: 20 VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDG---WYEGVMNGVTGLFPGNYV 69
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 53
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 20 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 65
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPGEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 4 VLALYDYQEKGDSEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 49
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLALYDYQEKSPAEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
ALYDYEA D+LSF GE +L +E +WW ++ + GY+P N +
Sbjct: 5 ALYDYEAITEDDLSFHKGEKFQILNS---SEGDWWEARSLTTGETGYIPSNYVA 55
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 62 EKLGILNNGAV--YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEG 117
++ G L G ALYDYE+ +LSFK GE + ++ + E +WW S + G
Sbjct: 76 QRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLSTGQTG 132
Query: 118 YVPRNLLGLYPRVQ 131
Y+P N + +Q
Sbjct: 133 YIPSNYVAPSDSIQ 146
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N +
Sbjct: 20 ALYDYEAWTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYV 69
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human Epidermal
Growth Factor Receptor Pathway Substrate 8-Like Protein
Length = 68
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE---GYVPRNLLG 125
V LYD+ A N +ELS E + VL E+ R+WW KL ++ GYVP N+LG
Sbjct: 10 VKILYDFTARNANELSVLKDEVLEVL----EDGRQWW--KLRSRSGQAGYVPCNILG 60
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW ++N ++G+VP
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNGRQGFVP 49
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
V ALYDY + + +LSF+ G+ ++VL E EWW ++ KEGY+P N +
Sbjct: 6 VVALYDYYSPFSWDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYVA 57
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 131
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P L R+
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSIYLAPVDRLD 66
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
V +YD +A+N DEL+F GE IIV E ++EWW + + EG R G++P
Sbjct: 4 VKTIYDCQADNDDELTFIEGEVIIVT---GEEDQEWW---IGHIEGQPERK--GVFP 52
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
A+ DYE + E++ TG+ + V+ K +E WW+ ++ K G++P + L
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEK---SESGWWFCQMKAKRGWIPASFL 63
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
A+ Y A DE+S GE + V+ K + WW + ++ GY P L
Sbjct: 86 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFPSMYL 133
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
A+ DYE + E++ TG+ + V+ K +E WW+ ++ K G++P + L
Sbjct: 15 AIADYEKTSGSEMALSTGDVVEVVEK---SESGWWFCQMKAKRGWIPASFL 62
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWW--WSKLNNKEGYVPRNLLGLYPR 129
ALYDYEA D+LSF GE +L + +E +WW S + GY+P L R
Sbjct: 12 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEVRSLTTGETGYIPSPYLAPVDR 66
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V LYDY+ + EL+ K G+ + +L + ++WW ++N+++G++P
Sbjct: 9 VLVLYDYQEKSPRELTIKKGDILTLL---NSTNKDWWKVEVNDRQGFIP 54
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 124
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N +
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
ALYDYEA D+LSF GE +L + +E +WW ++ + GY+P N +
Sbjct: 6 ALYDYEAWTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVA 56
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 64 LGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW-SKLNNKEGYVPRN 122
LG V ALYDY+ N+ EL+ + E +L D +E WW N EGYVP +
Sbjct: 3 LGSPEETVVIALYDYQTNDPQELALRRNEEYCLL---DSSEIHWWRVQDRNGHEGYVPSS 59
Query: 123 LL 124
L
Sbjct: 60 YL 61
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V LYDY+ + EL+ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLL---NSTNKDWWKIEVNDRQGFVP 54
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLTTGQTGYIPSN 59
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
A+ DYE + E++ TG+ + V+ K +E WW+ ++ K G++P + L
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEK---SESGWWFCQMKAKRGWIPASFL 63
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
A+ Y A DE+S GE + V+ K + WW + ++ GY P
Sbjct: 86 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFP 129
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
LYD+E N EL FK G+ I + + DEN W+ ++ + G+ P N
Sbjct: 8 GLYDFEPENQGELGFKEGDIITLTNQIDEN---WYEGMIHGESGFFPIN 53
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V A ++++ N DELSF G+ I V R E WW LN + G+ P N +
Sbjct: 11 VRAKFNFQQTNEDELSFSKGDVIHVTRV---EEGGWWEGTLNGRTGWFPSNYV 60
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLLGLYPRVQ 131
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N + +Q
Sbjct: 8 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLTTGQTGYIPSNYVAPSDSIQ 64
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
A+ DYE + E++ TG+ + V+ K +E WW+ ++ K G++P + L
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEK---SESGWWFCQMKAKRGWIPASFL 63
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
A+ Y A DE+S GE + V+ K + WW + ++ GY P
Sbjct: 86 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFP 129
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 9/58 (15%)
Query: 74 ALYDYE----ANNTD---ELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALYDY+ + N D EL+F TG+ I V G+ +E +++ +LN ++G VP N L
Sbjct: 12 ALYDYDPRESSPNVDVEAELTFCTGDIITVF--GEIDEDGFYYGELNGQKGLVPSNFL 67
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V AL+D++ EL F+ G+ I V+ D N WW + + G PRN +
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRNYV 54
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V AL+D++ EL F+ G+ I V+ D N WW + + G PRN +
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRNYV 54
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N
Sbjct: 5 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLTTGRTGYIPSN 52
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V AL+D++ EL F+ G+ I V+ D N WW + + G PRN +
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRNYV 54
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
L++Y N DEL K G+ I + +E E WW LNNK G P N +
Sbjct: 12 VLFEYIPQNEDELELKVGDIIDI---NEEVEEGWWSGTLNNKLGLFPSNFV 59
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLLGLYPRVQ 131
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N + +Q
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 63
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLLGLYPRVQ 131
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N + +Q
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 63
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLLGLYPRVQ 131
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N + +Q
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 63
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V LYDY+ + EL+ K G+ + +L + ++WW ++N ++G+VP
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLL---NSTNKDWWKIEVNGRQGFVP 54
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
A +D+ A DELSF+ + + +L E++ W+ ++L+ KEG +P N + +
Sbjct: 5 AKHDFSATADDELSFRKTQILKILNM--EDDSNWYRAELDGKEGLIPSNYIEM 55
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
L++Y N DEL K G+ I + +E E WW LNNK G P N +
Sbjct: 6 VLFEYIPQNEDELELKVGDIIDI---NEEVEEGWWSGTLNNKLGLFPSNFV 53
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V LYDY+ + E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 9 VLVLYDYQEKSPREVTIKKGDILTLL---NSTNKDWWKIEVNDRQGFVP 54
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALYD + +DEL+F G+ + +L + WW L+ ++G P N L
Sbjct: 12 ALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRL 62
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLL 124
A+YDY A + DE+SFK G+ II ++ DE W + + + G +P N +
Sbjct: 8 AMYDYMAADADEVSFKDGDAIINVQAIDEG---WMYGTVQRTGRTGMLPANYV 57
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 124
ALYDYE+ +LSFK GE + ++ + E +WW S + GY+P N +
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW ++ +++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVGDRQGFVP 54
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVP 120
V AL+D+ N+ ++L FK G+ +LR D+ E +WW ++ + K G +P
Sbjct: 137 VRALFDFNGNDEEDLPFKKGD---ILRIRDKPEEQWWNAEDSEGKRGMIP 183
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 57 LYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NN 114
+ S +K GI+ YD+ A + DEL+ K+G+ + +L D+ ++WW +L +
Sbjct: 1 MASKSKKRGIVQ-------YDFMAESQDELTIKSGDKVYIL--DDKKSKDWWMCQLVDSG 51
Query: 115 KEGYVPRNLL 124
K G VP +
Sbjct: 52 KSGLVPAQFI 61
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 12/58 (20%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNK--------EGYVPRN 122
AL+DY+A ++LSF+ G+ + VL D + WW ++ L K +GY+P N
Sbjct: 12 ALFDYQARTAEDLSFRAGDKLQVL---DTSHEGWWLARHLEKKGTGLGQQLQGYIPSN 66
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVP 120
V AL+D+ N+ ++L FK G+ +LR D+ E +WW ++ + K G +P
Sbjct: 139 VRALFDFNGNDEEDLPFKKGD---ILRIRDKPEEQWWNAEDSEGKRGMIP 185
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V A ++++ N DELSF G+ I V R E WW N + G+ P N +
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRV---EEGGWWEGTHNGRTGWFPSNYV 58
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V A ++++ N DELSF G+ I V R E WW N + G+ P N +
Sbjct: 8 VVRAKFNFQQTNEDELSFSKGDVIHVTRV---EEGGWWEGTHNGRTGWFPSNYV 58
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW ++ +++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVADRQGFVP 54
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVP 120
V AL+D+ N+ ++L FK G+ +LR D+ E +WW ++ + K G +P
Sbjct: 137 VRALFDFNGNDEEDLPFKKGD---ILRIRDKPEEQWWNAEDSEGKRGMIP 183
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V A ++++ N DELSF G+ I V R E WW N + G+ P N +
Sbjct: 7 VRAKFNFQQTNEDELSFSKGDVIHVTRV---EEGGWWEGTHNGRTGWFPSNYV 56
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
AL DY ++T L FK + I + K EN +W+ +LN KEG P
Sbjct: 15 ALKDYNVSDTSLLPFKRNDIITITFKDQEN--KWFMGQLNGKEGSFP 59
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
Length = 60
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 76 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLL 124
YD+ A + DEL+ K+G+ + +L D+ ++WW +L + K G VP +
Sbjct: 9 YDFMAESQDELTIKSGDKVYILD--DKKSKDWWMCQLVDSGKSGLVPAQFI 57
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 16/73 (21%)
Query: 62 EKLGILNNGAVY-ALYDYEANNTDELSFKTGECIIVLRK-----GDENEREWWWSKLNNK 115
+ +G G V+ A++DYEA +EL+ + G+ + VL + GDE WW+
Sbjct: 21 QSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEG----WWT----- 71
Query: 116 EGYVPRNLLGLYP 128
G +P +G++P
Sbjct: 72 -GQLPSGRVGVFP 83
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 67 LNNGA-VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 121
L G+ V AL+ YEA ++L F+ G+ I+VL K +E EW + K G P+
Sbjct: 2 LKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNE---EWLEGESKGKVGIFPK 54
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN---LLGLY 127
V LY + + +EL+F+ GE + V+ K EN+ EWW K + G VP+N +L
Sbjct: 20 VQTLYPFSSVTEEELNFEKGETMEVIEK-PENDPEWWKCKNARGQVGLVPKNYVVVLSDG 78
Query: 128 PRVQPS 133
P + P+
Sbjct: 79 PALHPA 84
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
G A YD+ A + ELS K G+ I +L K + ++ WW ++ + G+ P N +
Sbjct: 6 GTAKARYDFCARDRSELSLKEGDIIKILNK--KGQQGWWRGEIYGRIGWFPSNYV 58
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
GA+ A+Y YEA DE+S G+ I V+R GD+ W + + + +G P +
Sbjct: 1 GAMEAIYAYEAQGDDEISIDPGDIITVIR-GDDGSG-WTYGECDGLKGLFPTS 51
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
V ALYDY N ++L + G+ +L +E+ WW ++ N +EGY+P N
Sbjct: 11 VVALYDYMPMNANDLQLRKGDEYFIL---EESNLPWWRARDKNGQEGYIPSN 59
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 76 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
+ Y N DEL K G+ I V+ E E WW LN K G P N +
Sbjct: 14 FSYLPQNDDELELKVGDIIEVV---GEVEEGWWEGVLNGKTGMFPSNFI 59
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVP 120
V AL+D+ N+ ++L FK G+ +LR D+ E +WW ++ + K G +P
Sbjct: 17 VRALFDFNGNDEEDLPFKKGD---ILRIRDKPEEQWWNAEDSEGKRGMIP 63
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVP 120
G V AL+D+ N+ ++L FK G+ +LR D+ E +WW ++ + K G +P
Sbjct: 2 GYVRALFDFNGNDEEDLPFKKGD---ILRIRDKPEEQWWNAEDSEGKRGMIP 50
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
V ALYDY N ++L + G+ +L +E+ WW ++ N +EGY+P N
Sbjct: 4 VVALYDYMPMNANDLQLRKGDEYFIL---EESNLPWWRARDKNGQEGYIPSN 52
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALY Y + +L+F GE I+V +K + EWW + ++ G P N +
Sbjct: 13 ALYPYSSVEPGDLTFTEGEEILVTQK----DGEWWTGSIGDRSGIFPSNYV 59
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
V LYDY+ + E++ K G+ + +L + ++WW ++++++G++P
Sbjct: 9 VLVLYDYQEKSPREVTVKKGDILTLL---NSTNKDWWKVEVDDRQGFIP 54
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human Hypothetical
Protein Flj21522
Length = 68
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
+ LY++EA N EL+ GE + VL D ++R W + GY+P N+L
Sbjct: 10 MQVLYEFEARNPRELTVVQGEKLEVL---DHSKRWWLVKNEAGRSGYIPSNIL 59
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And
Pinch-1 Lim4 Domain
Length = 71
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
V LY + + +EL+F+ GE + V+ K EN+ EWW K + G VP+N
Sbjct: 8 VVQTLYPFSSVTEEELNFEKGETMEVIEK-PENDPEWWKCKNARGQVGLVPKN 59
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
A +DY + ELSFK G +++ + E+ WW + N +G VP +
Sbjct: 11 AKFDYVGRSARELSFKKGASLLLYHRASED---WWEGRHNGIDGLVPHQYI 58
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 68 NNGAVY-ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
++G V+ ALY +E DEL F+ G+ I + D N WW + G +P N +
Sbjct: 5 SSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSNYV 59
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
ALY +EA N DE+SF +G+ I V K E W + G+ P N + P +
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEK-TVGEPGWLYGSFQGNFGWFPCNYVEKMPSSE 66
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 131
ALYDY A +LSF GE +L D + +WW ++ + GY+P N + +Q
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQIL---DGDSGDWWEARSLTTGETGYIPSNYVAPVDSIQ 67
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 76 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
+ Y N DEL K G+ I V+ E E WW LN K G P N +
Sbjct: 25 FSYLPQNDDELELKVGDIIEVVG---EVEEGWWEGVLNGKTGMFPSNFI 70
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLL 124
V A+YD++A +L + G+ I+L K N+ WW ++ EGY+P N +
Sbjct: 5 VVAMYDFQATEAHDLRLERGQEYIILEK---NDLHWWRARDKYGSEGYIPSNYV 55
>pdb|1MV3|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 213
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW 109
V A +DY A +TDEL K G+ ++V+ + E++ W
Sbjct: 145 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGW 182
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW-SKLNNKEGYVPRNLL 124
V ALYDY+ N+ EL+ + E +L D +E WW N EGYVP + L
Sbjct: 22 VIALYDYQTNDPQELALRRNEEYCLL---DSSEIHWWRVQDRNGHEGYVPSSYL 72
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL 124
V LY + + +EL+F+ GE + V+ K EN+ EWW K + G VP+N +
Sbjct: 4 VVQTLYPFSSVTEEELNFEKGETMEVIEK-PENDPEWWKCKNARGQVGLVPKNYV 57
>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|A Chain A, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 63
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW-SKLNNKEGYVPRNLL 124
V ALYDY+ N+ EL+ + E +L D +E WW N EGY P + L
Sbjct: 8 VIALYDYQTNDPQELALRCDEEYYLL---DSSEIHWWRVQDKNGHEGYAPSSYL 58
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
V A ++++ N DELS G+ I V R E WW LN + G+ P N +
Sbjct: 13 VKARFNFKQTNEDELSVCKGDIIYVTRV---EEGGWWEGTLNGRTGWFPSNYV 62
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 76 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
YDY+A + DEL+ + GE I ++K E W +LN + G P N +
Sbjct: 7 YDYDAVHDDELTIRVGEIIRNVKK--LQEEGWLEGELNGRRGMFPDNFV 53
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALY +E DEL F+ G+ I + D N WW + G +P N +
Sbjct: 8 ALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSNYV 55
>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized Average
Structure
Length = 77
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW-SKLNNKEGYVPRNLL 124
V ALYDY+ N+ EL+ + E +L D +E WW N EGY P + L
Sbjct: 23 VIALYDYQTNDPQELALRCDEEYYLL---DSSEIHWWRVQDKNGHEGYAPSSYL 73
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 76 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
YDY+A + DEL+ + GE I ++K E W +LN + G P N +
Sbjct: 8 YDYDAVHDDELTIRVGEIIRNVKKL--QEEGWLEGELNGRRGMFPDNFV 54
>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain
pdb|2RNA|A Chain A, Itk Sh3 Average Minimized
Length = 64
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW-SKLNNKEGYVPRNLL 124
V ALYDY+ N+ EL+ + E +L D +E WW N EGY P + L
Sbjct: 8 VIALYDYQTNDPQELALRCDEEYYLL---DSSEIHWWRVQDKNGHEGYAPSSYL 58
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVP 120
V AL+D+ N+ ++L FK G+ +LR D+ E +WW ++ + K G +P
Sbjct: 6 VRALFDFNGNDEEDLPFKKGD---ILRIRDKPEEQWWNAEDSEGKRGMIP 52
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVP 120
V AL+D+ N+ ++L FK G+ +LR D+ E +WW ++ + K G +P
Sbjct: 4 VRALFDFNGNDEEDLPFKKGD---ILRIRDKPEEQWWNAEDSEGKRGMIP 50
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 133
A +DY ELSFK G +++ ++ ++ WW + N +G +P Y VQ +
Sbjct: 14 AKFDYVGRTARELSFKKGASLLLYQRASDD---WWEGRHNGIDGLIPHQ----YIVVQDT 66
Query: 134 ATP 136
+ P
Sbjct: 67 SGP 69
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVP 120
V AL+D+ N+ ++L FK G+ +LR D+ E +WW ++ + K G +P
Sbjct: 3 VRALFDFNGNDEEDLPFKKGD---ILRIRDKPEEQWWNAEDSEGKRGMIP 49
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVP 120
V AL+D+ N+ ++L FK G+ +LR D+ E +WW ++ + K G +P
Sbjct: 4 VRALFDFNGNDEEDLPFKKGD---ILRIRDKPEEQWWNAEDSEGKRGMIP 50
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRNLLGLYPRV 130
ALYDY+A+ +LSF GE +L + WW S + GY+P N + +
Sbjct: 11 ALYDYQADRWTDLSFHKGEKFQILDASPPGD---WWEARSLTTGETGYIPSNYVAPVDSI 67
Query: 131 Q 131
Q
Sbjct: 68 Q 68
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVP 120
V AL+D+ N+ ++L FK G+ +LR D+ E +WW ++ + K G +P
Sbjct: 6 VRALFDFNGNDEEDLPFKKGD---ILRIRDKPEEQWWNAEDSEGKRGMIP 52
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 77 DYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
+Y+ ELS + GE + V+ K NE WW+ + ++G+VP L
Sbjct: 16 NYKKQENSELSLQAGEVVDVIEK---NESGWWFVSTSEEQGWVPATYL 60
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALY + ++L + G+ I +L D NE +WW K+ ++ G+ P N +
Sbjct: 12 ALYKFVPQENEDLEMRPGDIITLLE--DSNE-DWWKGKIQDRIGFFPANFV 59
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 13 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 61
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRNLLGLYPRV 130
ALYDY A +LSF GE +L G + WW S + GY+P N + +
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQILEFGPGD----WWEARSLTTGETGYIPSNYVAPVDSI 66
Query: 131 Q 131
Q
Sbjct: 67 Q 67
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
AL D+E ++ DEL F+ + I ++ + DE+ W +LN G+ P
Sbjct: 12 ALLDFERHDDDELGFRKNDIITIISQKDEH---CWVGELNGLRGWFP 55
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 78 YEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSA 134
Y + + DE+ F+ G + V+RK N WW+ + KEG+ P + L PS+
Sbjct: 17 YTSQSKDEIGFEKGVTVEVIRK---NLEGWWYIRYLGKEGWAPASYLKKAKDSGPSS 70
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 87 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 135
>pdb|1AWO|A Chain A, The Solution Nmr Structure Of Abl Sh3 And Its Relationship
To Sh2 In The Sh(32) Construct, 20 Structures
Length = 62
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 58
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
ALY + A + L+F + I VL E + WW+ ++ ++G+ P++ + L
Sbjct: 17 ALYPWRAKKDNHLNFNKNDVITVL----EQQDMWWFGEVQGQKGWFPKSYVKL 65
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLL 124
A+YDY A + DE+SF+ G+ I+ ++ D+ W + + + G +P N +
Sbjct: 11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDG---WMYGTVQRTGRTGMLPANYI 60
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 48 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 96
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 45 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 93
>pdb|1AOJ|A Chain A, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined Dimer
pdb|1AOJ|B Chain B, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined Dimer
pdb|1I07|A Chain A, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I07|B Chain B, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I0C|A Chain A, Eps8 Sh3 Closed Monomer
pdb|1I0C|B Chain B, Eps8 Sh3 Closed Monomer
Length = 60
Score = 33.1 bits (74), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Query: 76 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRNLLGL 126
YD+ A N+ ELS + + +L ++ R+WW K+ N G+VP N+L +
Sbjct: 8 YDFVARNSSELSVMKDDVLEIL----DDRRQWW--KVRNASGDSGFVPNNILDI 55
>pdb|1BB9|A Chain A, Crystal Structure Of The Sh3 Domain From Rat Amphiphysin 2
Length = 115
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW 109
V A +DY A +TDEL K G+ ++V+ + E++ W
Sbjct: 47 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGW 84
>pdb|1BBZ|A Chain A, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|C Chain C, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|G Chain G, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|E Chain E, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
Length = 58
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 5 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 53
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
ALYDY+A DE+SF + I + D+ WW + G P N + L
Sbjct: 14 ALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPANYVEL 63
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 32.7 bits (73), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
N Y ++Y A DELS G +IV+ K + WW N + G+ P N +
Sbjct: 17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDG---WWRGSYNGQVGWFPSNYV 69
>pdb|1JU5|C Chain C, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 61
Score = 32.7 bits (73), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 7 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 55
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVP 120
G A +++ + E+SF+ GE I +LR+ DEN W+ ++ +++G P
Sbjct: 7 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDEN---WYEGRIPGTSRQGIFP 56
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
NN LYDY+A N+ ELS E I V + +W + N++G VP
Sbjct: 16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGM-DSDWLMGERGNQKGKVP 67
>pdb|1ABO|A Chain A, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABO|B Chain B, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABQ|A Chain A, Crystal Structure Of The Unliganded Abl Tyrosine Kinase
Sh3 Domain
Length = 62
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
ALYD+ A+ + LS GE + VL G + EW ++ N +G+VP N +
Sbjct: 9 ALYDFVASGDNTLSITKGEKLRVL--GYNHNGEWCEAQTKNGQGWVPSNYI 57
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
N Y ++Y A DELS G +IV+ K + WW N + G+ P N +
Sbjct: 4 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDG---WWRGSYNGQVGWFPSNYV 56
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
ALYDY+A DE+SF + I + D+ WW + G P N + L
Sbjct: 22 ALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPANYVEL 71
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
ALYDY+A DE+SF + I + D+ WW + G P N + L
Sbjct: 15 ALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPANYVEL 64
>pdb|1MUZ|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
pdb|1MV0|B Chain B, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 81
Score = 32.3 bits (72), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW------------SKLNNKEGYV 119
V A +DY A +TDEL K G+ ++V+ + E++ W KL G
Sbjct: 13 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVF 72
Query: 120 PRNLLGLYP 128
P N P
Sbjct: 73 PENFTERVP 81
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 32.3 bits (72), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 74 ALYDYEANNTD-ELSFKTGECIIVLRKGDENEREWWWSKLNNKE---GYVPRNLLGLYPR 129
ALYD+ N + E++ K G+ + +L K D R+ W K+ K GY+P N + + R
Sbjct: 19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR 78
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 32.3 bits (72), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 66 ILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVP 120
+L G A Y ++ + ELSF+ GE I ++RK +EN W+ ++ ++G P
Sbjct: 14 VLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNEN---WYEGRITGTGRQGIFP 67
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
A + Y ELSF+ G+ VLR + +WW + N G +P + L
Sbjct: 15 ACFAYTGRTAQELSFRRGD---VLRLHERASSDWWRGEHNGMRGLIPHKYITL 64
>pdb|2DL5|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Kiaa0769 Protein
Length = 78
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 75 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK---EGYVPRNLLGLYPRVQ 131
+Y Y+A+ DEL+ + E + V+ GD + W K NK GYVP L
Sbjct: 19 VYSYKASQPDELTIEEHEVLEVIEDGDMED----WVKARNKVGQVGYVPEKYLQFPTSSG 74
Query: 132 PSA 134
PS+
Sbjct: 75 PSS 77
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
Length = 80
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 74 ALYDYEANNTD-ELSFKTGECIIVLRKGDENEREWWWSKLNNKE---GYVPRNLLGLYPR 129
ALYD+ N + E++ K G+ + +L K D R+ W K+ K GY+P N + + R
Sbjct: 19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR 78
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLL 124
A+YDY A + DE+SF+ G+ I+ +++ D+ W + + G +P N +
Sbjct: 8 AVYDYSAADEDEVSFQDGDTIVNVQQIDDG---WMYGTVERTGDTGMLPANYV 57
>pdb|2EKH|A Chain A, Solution Structures Of The Sh3 Domain Of Human Kiaa0418
Length = 80
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 78 YEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSAT 135
Y+ E+SF G + VL K E WW+ + EG+ P + L L QP +
Sbjct: 17 YQKVQDSEISFPAGVEVQVLEK---QESGWWYVRFGELEGWAPSHYLVLDENEQPDPS 71
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 75 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
L+ + +EL G + VL+KG++N W N ++G VP N L
Sbjct: 13 LFGFVPETKEELQVMPGNIVFVLKKGNDN---WATVMFNGQKGLVPCNYL 59
>pdb|1NM7|A Chain A, Solution Structure Of The Scpex13p Sh3 Domain
Length = 69
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 74 ALYDYEANNTD-ELSFKTGECIIVLRKGDENEREWWWSKLNNKE---GYVPRNLL 124
ALYD+ N + E++ K G+ + +L K D R+ W K+ K GY+P N +
Sbjct: 12 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 66
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALY +E DEL + G+ I + D N WW + G +P N
Sbjct: 19 ALYTFEPRTPDELYIEEGDIIYITDXSDTN---WWKGTSKGRTGLIPSN 64
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVP 120
A +++ + E+SF+ GE I +LR+ DEN W+ ++ +++G P
Sbjct: 12 AKFNFNGDTQVEMSFRKGERITLLRQVDEN---WYEGRIPGTSRQGIFP 57
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
AL+D+ N+ EL+FK G+ I +L + + ++W + G P
Sbjct: 9 ALFDFTGNSKLELNFKAGDVIFLLSRIN---KDWLEGTVRGATGIFP 52
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
AL+D+ N+ EL+FK G+ I +L + + ++W + G P
Sbjct: 23 ALFDFTGNSKLELNFKAGDVIFLLSRIN---KDWLEGTVRGATGIFP 66
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C,
Gamma 2
Length = 69
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK-EGYVPRNLL 124
V ALYDY+A +DEL+F G I + K WW + + Y P N +
Sbjct: 10 VKALYDYKAKRSDELTFCRGALIHNVSK---EPGGWWKGDYGTRIQQYFPSNYV 60
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
AL+D+ N+ EL+FK G+ I +L + + ++W + G P
Sbjct: 179 ALFDFTGNSKLELNFKAGDVIFLLSRIN---KDWLEGTVRGATGIFP 222
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--------SKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW K ++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVKATANGKTYERQGFVP 62
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
Length = 65
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--------SKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW K ++G+VP
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVKITVNGKTYERQGFVP 57
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
AL + A + L+F + I VL E + WW+ +++ G+ P++ + + P
Sbjct: 15 ALCSWTAKKDNHLNFSKHDIITVL----EQQENWWFGEVHGGRGWFPKSYVKIIP 65
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--------SKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW K ++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVKITVNGKTYERQGFVP 62
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRN 122
V A +DY A EL K E + +L ++ + WW N N+ GYVP N
Sbjct: 34 VIAKWDYTAQQDQELDIKKNERLWLL-----DDSKTWWRVRNAANRTGYVPSN 81
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--------SKLNNKEGYVP 120
V ALYDY+ + E++ K G+ + +L + ++WW K ++G+VP
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVKATANDKTYERQGFVP 62
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW 108
AV AL+DY+A DEL+F I + K D WW
Sbjct: 8 AVKALFDYKAQREDELTFTKSAIIQNVEKQDGG---WW 42
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
Length = 62
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN 113
V ALYDY+ + E++ K G+ + +L + ++WW ++N
Sbjct: 24 VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVN 62
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW 108
AV AL+DY+A DEL+F I + K D WW
Sbjct: 5 AVKALFDYKAQREDELTFTKSAIIQNVEKQDGG---WW 39
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 85 ELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 15 EVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 47
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRN 122
V A +DY A EL K E + +L ++ + WW + + NK G+VP N
Sbjct: 10 VVAKFDYVAQQEQELDIKKNERLWLL----DDSKSWWRVRNSMNKTGFVPSN 57
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 29.3 bits (64), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 85 ELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 7 EVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 39
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 29.3 bits (64), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRK--GDENEREWWWSKLNNKEGYVP 120
A Y++ A + ELS + G+ + + + GD+ WW + N + G+ P
Sbjct: 12 ARYNFAARDMRELSLREGDVVRIYSRIGGDQG---WWKGETNGRIGWFP 57
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 29.3 bits (64), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
A +D++A EL + G+ + + ++ D+N W+ + + + G PR + L
Sbjct: 12 AKFDFKAQTLKELPLQKGDIVYIYKQIDQN---WYEGEHHGRVGIFPRTYIEL 61
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRNLL 124
A+Y Y N DEL + G+ + V+++ D+ W+ S+ K G P N +
Sbjct: 12 AMYQYRPQNEDELELREGDRVDVMQQCDDG----WFVGVSRRTQKFGTFPGNYV 61
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 85 ELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
E++ K G+ + +L + ++WW ++N+++G+VP
Sbjct: 5 EVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 37
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRN 122
V A +DY A EL K E + +L ++ + WW N N+ GYVP N
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLL-----DDSKTWWRVRNAANRTGYVPSN 54
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 64 LGILNNGAVYALYDYEANNTDELSFKTGECIIVLRK 99
+ I+N AV ALYD+E N +EL G+ + + K
Sbjct: 1 MAIVNQRAV-ALYDFEPENDNELRLAEGDIVFISYK 35
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 28.9 bits (63), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRN 122
V A +DY A EL K E + +L ++ + WW + + NK G+VP N
Sbjct: 9 VVAKFDYVAQQEQELDIKKNERLWLL----DDSKSWWRVRNSMNKTGFVPSN 56
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRNLL 124
AV AL+DY+A DEL+F I + K E WW K+ + P N +
Sbjct: 8 AVKALFDYKAQREDELTFIKSAIIQNVEK---QEGGWWRGDYGGKKQLWFPSNYV 59
>pdb|2GTJ|A Chain A, Reduced Form Of Adap Hsh3-N-Domain
pdb|2GTO|A Chain A, Oxidized Form Of Adap Hsh3-N
Length = 96
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 81 NNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYV 119
+ELSFK GE I ++R D E +W GY+
Sbjct: 39 GGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYI 77
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Query: 61 QEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVL 97
+EK G+ A Y+Y+A DELS + G+ + +L
Sbjct: 10 EEKYGV-------AFYNYDARGADELSLQIGDTVHIL 39
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 73 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
+ + Y A DELS G + V+ K + WW N + G+ P N +
Sbjct: 4 FVKFAYVAEREDELSLVKGSRVTVMEKCSDG---WWRGSYNGQIGWFPSNYV 52
>pdb|1TG0|A Chain A, 0.97-A Structure Of The Sh3 Domain Of Bbc1
pdb|1ZUK|A Chain A, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
pdb|1ZUK|B Chain B, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
Length = 68
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR 129
V A + Y+++ D+L+F+ + IIV D EW++ + + G V + G++P+
Sbjct: 10 VVAQFPYKSDYEDDLNFEKDQEIIVTSVED---AEWYFGEYQDSNGDV---IEGIFPK 61
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 76 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
+D++A + EL+ + G+ + + ++ D+N W + + + G P N + + P
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKN---WLEGEHHGRLGIFPANYVEVLP 57
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALY +A + ELSF G + E W LN K G +P N
Sbjct: 15 ALYACKAEHDSELSFTAGTVFDNVHP--SQEPGWLEGTLNGKTGLIPEN 61
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDEN 103
ALY Y N DEL + G+ + V+ K D+
Sbjct: 11 ALYSYIPQNDDELELRDGDIVDVMEKCDDG 40
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDEN 103
ALY Y N DEL + G+ + V+ K D+
Sbjct: 11 ALYSYIPQNDDELELRDGDIVDVMEKCDDG 40
>pdb|1WDX|A Chain A, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|B Chain B, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|C Chain C, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|D Chain D, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
Length = 69
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR 129
V A + Y+++ D+L+F+ + IIV D EW++ + + G V + G++P+
Sbjct: 11 VVAQFPYKSDYEDDLNFEKDQEIIVTSVED---AEWYFGEYQDSNGDV---IEGIFPK 62
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGL 126
A YDY+A +EL+F + II + D+ +WW +L + +G P N + L
Sbjct: 9 AEYDYDAAEDNELTFVENDKIINIEFVDD---DWWLGELEKDGSKGLFPSNYVSL 60
>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Peroxisomal
Biogenesis Factor 13
Length = 93
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 74 ALYDYEANNTDELSFKTGECI-IVLRKGDENEREWWWSKLNNK-EGYVPRN 122
A YD+ A + +E+SF+ G+ + + L++ R W + L+ + G +P N
Sbjct: 22 AEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPAN 72
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGL 126
A YDY+A +EL+F + II + D+ +WW +L + +G P N + L
Sbjct: 6 AEYDYDAAEDNELTFVENDKIINIEFVDD---DWWLGELEKDGSKGLFPSNYVSL 57
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGL 126
A YDY+A +EL+F + II + D+ +WW +L + +G P N + L
Sbjct: 5 AEYDYDAAEDNELTFVENDKIINIEFVDD---DWWLGELEKDGSKGLFPSNYVSL 56
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 76 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
+D++A + EL+ + G+ + + ++ D+N W + + + G P N
Sbjct: 14 FDFQAQSPKELTLQKGDIVYIHKEVDKN---WLEGEHHGRLGIFPAN 57
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRK 99
ALYD+E N +EL G+ + + K
Sbjct: 6 ALYDFEPENDNELRLAEGDIVFISYK 31
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 73 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
+ + Y A DELS G + V + WW N + G+ P N +
Sbjct: 5 FVXFAYVAEREDELSLVXGSRVTVXEXCSDG---WWRGSYNGQIGWFPSNYV 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,775,301
Number of Sequences: 62578
Number of extensions: 133773
Number of successful extensions: 593
Number of sequences better than 100.0: 258
Number of HSP's better than 100.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 266
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)