Query psy7685
Match_columns 137
No_of_seqs 204 out of 1514
Neff 8.1
Searched_HMMs 46136
Date Sat Aug 17 00:46:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0515|consensus 100.0 1.1E-35 2.3E-40 238.7 3.7 129 7-135 620-749 (752)
2 PF14604 SH3_9: Variant SH3 do 99.6 1.3E-15 2.8E-20 88.2 5.0 49 74-125 1-49 (49)
3 PF07653 SH3_2: Variant SH3 do 99.5 5.5E-14 1.2E-18 83.1 5.1 54 71-127 1-55 (55)
4 KOG2070|consensus 99.4 7.8E-14 1.7E-18 112.4 2.7 56 71-129 19-74 (661)
5 PF00018 SH3_1: SH3 domain; I 99.4 1E-12 2.2E-17 75.5 4.5 46 73-121 1-48 (48)
6 KOG2199|consensus 99.3 3.3E-13 7.1E-18 106.3 1.0 59 67-128 213-271 (462)
7 smart00326 SH3 Src homology 3 99.3 1.8E-11 3.9E-16 71.5 6.9 55 70-127 3-58 (58)
8 KOG1029|consensus 99.3 2.4E-12 5.2E-17 108.2 3.0 61 70-133 1054-1115(1118)
9 KOG1118|consensus 99.3 3E-12 6.5E-17 98.1 3.2 62 66-130 303-364 (366)
10 cd00174 SH3 Src homology 3 dom 99.2 3.8E-11 8.3E-16 69.3 6.7 51 72-125 2-53 (54)
11 KOG4225|consensus 99.2 2.8E-11 6.1E-16 96.4 5.9 56 71-129 232-287 (489)
12 KOG4226|consensus 99.1 7E-11 1.5E-15 89.7 5.8 58 70-130 108-165 (379)
13 KOG2996|consensus 99.1 3.3E-11 7.1E-16 99.2 3.6 59 69-128 805-863 (865)
14 KOG2856|consensus 99.1 1E-11 2.2E-16 97.2 0.3 56 70-127 415-471 (472)
15 KOG4226|consensus 99.1 7.2E-11 1.6E-15 89.6 3.3 59 70-129 192-251 (379)
16 KOG0162|consensus 99.1 7.3E-11 1.6E-15 99.2 3.4 56 69-127 1051-1106(1106)
17 KOG4348|consensus 99.0 1.3E-10 2.8E-15 93.0 3.4 59 69-128 261-319 (627)
18 KOG1029|consensus 98.9 6E-10 1.3E-14 94.1 3.2 61 69-130 693-753 (1118)
19 KOG4348|consensus 98.9 3.9E-10 8.4E-15 90.2 -0.1 59 68-129 99-157 (627)
20 KOG1264|consensus 98.8 2E-09 4.4E-14 91.6 2.6 60 68-130 773-833 (1267)
21 KOG4225|consensus 98.8 3.2E-09 7E-14 84.8 3.4 53 71-126 434-488 (489)
22 KOG4792|consensus 98.8 1.5E-09 3.2E-14 80.5 1.1 57 69-128 124-181 (293)
23 KOG2546|consensus 98.7 5.2E-09 1.1E-13 83.4 2.8 56 70-128 424-479 (483)
24 KOG1843|consensus 98.7 1.1E-08 2.4E-13 81.3 3.4 59 67-126 414-472 (473)
25 KOG3655|consensus 98.6 1.3E-08 2.9E-13 82.0 1.6 58 68-128 426-484 (484)
26 KOG3875|consensus 98.6 9.3E-09 2E-13 79.2 0.7 60 70-129 269-332 (362)
27 KOG1702|consensus 98.4 1.7E-07 3.8E-12 68.6 3.5 58 67-127 205-264 (264)
28 KOG3601|consensus 98.4 1.8E-07 3.9E-12 68.7 2.2 55 70-127 164-218 (222)
29 KOG4278|consensus 98.3 4.8E-07 1E-11 76.3 4.1 58 69-129 90-148 (1157)
30 KOG3632|consensus 98.1 2.4E-06 5.3E-11 74.3 4.0 59 68-128 1137-1203(1335)
31 KOG3557|consensus 98.0 1.1E-06 2.4E-11 73.4 0.2 60 68-131 499-559 (721)
32 KOG2222|consensus 98.0 9.8E-07 2.1E-11 72.1 -0.9 57 69-128 548-604 (848)
33 KOG3523|consensus 98.0 7.2E-07 1.6E-11 74.1 -1.8 59 68-129 607-667 (695)
34 KOG2528|consensus 98.0 3.1E-06 6.8E-11 68.2 1.7 59 70-130 3-62 (490)
35 KOG4773|consensus 97.7 4.8E-06 1E-10 65.3 -1.3 109 15-128 119-231 (386)
36 KOG4792|consensus 97.6 0.00021 4.6E-09 53.5 6.0 59 71-132 229-289 (293)
37 KOG0197|consensus 97.5 2.8E-05 6.2E-10 63.6 0.9 56 69-127 11-69 (468)
38 KOG3725|consensus 97.4 3.1E-05 6.8E-10 58.9 0.0 58 69-127 317-374 (375)
39 KOG4575|consensus 97.4 0.00017 3.6E-09 60.8 4.2 54 71-128 10-66 (874)
40 KOG3771|consensus 97.4 6.3E-05 1.4E-09 61.1 1.7 56 69-126 400-455 (460)
41 KOG1451|consensus 97.4 0.00015 3.2E-09 60.7 3.7 57 69-127 756-812 (812)
42 KOG0609|consensus 97.4 4.6E-05 1E-09 62.8 0.6 55 70-127 215-281 (542)
43 KOG3601|consensus 97.2 4.1E-05 8.9E-10 56.4 -1.9 53 72-126 3-55 (222)
44 KOG4429|consensus 97.0 0.00023 5E-09 55.1 0.4 55 71-128 365-419 (421)
45 KOG3775|consensus 96.8 0.0007 1.5E-08 54.0 1.7 57 70-129 263-321 (482)
46 KOG3565|consensus 96.4 0.00079 1.7E-08 57.5 -0.2 62 66-129 575-638 (640)
47 PF13606 Ank_3: Ankyrin repeat 96.4 0.0014 3.1E-08 33.5 0.8 24 6-29 5-29 (30)
48 KOG3632|consensus 96.1 0.0081 1.8E-07 53.2 4.6 60 70-131 448-514 (1335)
49 PF00023 Ank: Ankyrin repeat H 95.3 0.0085 1.8E-07 30.9 1.0 26 7-32 6-32 (33)
50 PF08239 SH3_3: Bacterial SH3 95.2 0.041 8.9E-07 31.5 3.9 37 87-125 18-55 (55)
51 PF14603 hSH3: Helically-exten 95.2 0.029 6.2E-07 36.0 3.4 43 82-127 29-72 (89)
52 KOG0199|consensus 95.0 0.031 6.7E-07 48.6 3.9 53 71-125 376-430 (1039)
53 PRK10884 SH3 domain-containing 94.8 0.036 7.8E-07 41.1 3.5 41 87-129 49-90 (206)
54 KOG0040|consensus 93.8 0.00083 1.8E-08 61.4 -8.1 57 71-130 970-1026(2399)
55 smart00287 SH3b Bacterial SH3 93.4 0.2 4.4E-06 29.3 4.3 35 87-124 26-61 (63)
56 PF06347 SH3_4: Bacterial SH3 93.3 0.25 5.3E-06 28.4 4.4 35 86-124 19-53 (55)
57 KOG2996|consensus 91.4 0.11 2.3E-06 44.2 1.5 44 84-129 625-670 (865)
58 KOG3812|consensus 90.3 0.13 2.8E-06 41.0 1.1 47 72-121 61-117 (475)
59 PF13857 Ank_5: Ankyrin repeat 89.8 0.14 3.1E-06 29.6 0.7 33 6-39 19-52 (56)
60 KOG3705|consensus 88.9 0.54 1.2E-05 38.4 3.6 56 68-126 508-565 (580)
61 PRK13914 invasion associated s 88.0 1.1 2.4E-05 37.4 4.9 41 86-129 103-144 (481)
62 COG3103 SH3 domain protein [Si 85.2 1.6 3.6E-05 32.3 4.2 40 87-128 49-89 (205)
63 PF13637 Ank_4: Ankyrin repeat 83.3 0.68 1.5E-05 26.1 1.2 34 6-40 4-38 (54)
64 KOG0505|consensus 82.5 0.5 1.1E-05 39.5 0.5 40 7-47 110-150 (527)
65 smart00248 ANK ankyrin repeats 79.3 1.1 2.3E-05 20.2 0.9 23 6-28 5-28 (30)
66 KOG4412|consensus 79.1 1.1 2.3E-05 33.1 1.2 28 7-34 76-105 (226)
67 PF12796 Ank_2: Ankyrin repeat 75.5 1.7 3.7E-05 26.7 1.3 27 6-32 29-56 (89)
68 PHA02791 ankyrin-like protein; 75.3 1.5 3.2E-05 34.0 1.1 27 7-33 198-225 (284)
69 KOG3580|consensus 74.9 5.8 0.00013 34.3 4.6 53 71-123 506-564 (1027)
70 PF12913 SH3_6: SH3 domain of 70.1 13 0.00029 21.6 4.1 33 87-121 22-54 (54)
71 KOG3676|consensus 68.5 2.2 4.7E-05 37.5 0.8 34 9-43 246-280 (782)
72 PHA02795 ankyrin-like protein; 63.3 3.5 7.5E-05 34.1 1.0 25 6-30 119-146 (437)
73 smart00743 Agenet Tudor-like d 63.1 14 0.00031 21.2 3.4 22 87-111 2-23 (61)
74 KOG4384|consensus 61.7 5.5 0.00012 31.9 1.8 58 70-130 137-196 (361)
75 KOG0512|consensus 61.5 4.2 9E-05 29.9 1.0 29 7-35 101-130 (228)
76 KOG0509|consensus 61.3 3.8 8.2E-05 35.1 0.8 28 7-34 116-144 (600)
77 KOG0509|consensus 59.6 4.4 9.4E-05 34.7 0.9 27 7-33 82-109 (600)
78 PHA02884 ankyrin repeat protei 59.5 5.3 0.00012 31.3 1.4 35 6-40 73-108 (300)
79 PF11302 DUF3104: Protein of u 57.5 16 0.00034 22.8 2.9 26 86-111 4-32 (75)
80 PF05641 Agenet: Agenet domain 56.2 16 0.00034 21.9 2.8 24 88-111 1-24 (68)
81 KOG0511|consensus 56.1 4.8 0.00011 32.9 0.6 21 8-28 74-95 (516)
82 KOG0508|consensus 55.9 6.5 0.00014 33.0 1.3 40 7-46 88-128 (615)
83 PHA02946 ankyin-like protein; 55.1 6.9 0.00015 32.1 1.4 33 7-40 76-109 (446)
84 PHA02791 ankyrin-like protein; 54.7 6.1 0.00013 30.6 1.0 27 6-32 163-190 (284)
85 TIGR00870 trp transient-recept 50.7 7.3 0.00016 33.9 0.9 25 7-31 132-157 (743)
86 PHA02798 ankyrin-like protein; 48.8 8.6 0.00019 31.7 1.0 36 7-43 262-298 (489)
87 PHA02876 ankyrin repeat protei 47.3 11 0.00023 32.5 1.4 27 6-32 181-208 (682)
88 PRK13545 tagH teichoic acids e 46.9 26 0.00056 30.0 3.5 40 90-129 374-416 (549)
89 PHA02743 Viral ankyrin protein 44.9 14 0.00031 25.8 1.5 25 7-31 61-89 (166)
90 KOG0783|consensus 44.1 10 0.00023 34.1 0.9 36 7-42 56-92 (1267)
91 PHA02730 ankyrin-like protein; 44.1 11 0.00024 32.9 1.0 34 7-41 45-82 (672)
92 KOG4412|consensus 44.0 11 0.00025 27.8 0.9 27 7-33 110-137 (226)
93 PHA02878 ankyrin repeat protei 43.2 14 0.00029 30.3 1.4 34 7-41 41-75 (477)
94 PHA02795 ankyrin-like protein; 42.0 13 0.00028 30.8 1.1 36 6-42 224-260 (437)
95 KOG0515|consensus 41.2 12 0.00026 31.9 0.8 34 7-41 587-621 (752)
96 KOG0507|consensus 40.4 13 0.00028 32.9 0.9 38 7-45 225-263 (854)
97 PLN03192 Voltage-dependent pot 36.6 20 0.00043 31.9 1.4 25 7-31 626-651 (823)
98 KOG4214|consensus 36.5 15 0.00033 24.3 0.5 27 5-31 36-63 (117)
99 PHA02875 ankyrin repeat protei 36.3 22 0.00047 28.3 1.5 25 7-31 172-197 (413)
100 KOG0512|consensus 36.2 17 0.00037 26.7 0.8 29 7-35 134-163 (228)
101 PHA02989 ankyrin repeat protei 35.2 17 0.00038 29.9 0.8 27 7-33 260-287 (494)
102 PHA02741 hypothetical protein; 33.4 25 0.00054 24.5 1.3 35 6-40 63-102 (169)
103 KOG0507|consensus 32.6 20 0.00043 31.8 0.8 29 6-34 192-221 (854)
104 KOG2384|consensus 31.8 11 0.00023 28.1 -0.8 39 7-45 16-55 (223)
105 PHA02736 Viral ankyrin protein 31.5 22 0.00048 24.1 0.8 35 7-41 59-97 (154)
106 PHA03095 ankyrin-like protein; 30.5 27 0.00059 28.2 1.2 34 7-41 261-295 (471)
107 PHA02884 ankyrin repeat protei 30.3 26 0.00056 27.5 1.0 36 6-42 107-143 (300)
108 PHA02878 ankyrin repeat protei 29.8 26 0.00057 28.7 1.0 25 7-31 172-197 (477)
109 KOG4177|consensus 29.4 32 0.0007 32.0 1.6 35 6-41 543-578 (1143)
110 PLN03192 Voltage-dependent pot 29.2 26 0.00057 31.1 1.0 28 6-33 561-589 (823)
111 PHA02875 ankyrin repeat protei 28.7 28 0.0006 27.7 1.0 27 6-32 105-132 (413)
112 KOG0505|consensus 27.9 17 0.00038 30.7 -0.3 40 7-47 235-275 (527)
113 PHA02874 ankyrin repeat protei 27.2 32 0.00069 27.8 1.1 26 6-31 38-64 (434)
114 PHA03100 ankyrin repeat protei 26.9 33 0.00072 27.8 1.1 25 7-31 145-172 (480)
115 PHA02859 ankyrin repeat protei 26.9 38 0.00082 24.6 1.3 35 7-41 55-92 (209)
116 PHA03095 ankyrin-like protein; 26.4 37 0.00081 27.4 1.4 27 7-33 87-115 (471)
117 PHA03100 ankyrin repeat protei 25.9 34 0.00075 27.7 1.1 34 7-41 254-288 (480)
118 PTZ00322 6-phosphofructo-2-kin 25.0 37 0.0008 29.5 1.1 28 6-33 118-146 (664)
119 TIGR00870 trp transient-recept 24.8 30 0.00066 30.1 0.6 35 6-41 178-213 (743)
120 PHA02730 ankyrin-like protein; 23.6 47 0.001 29.2 1.5 37 6-42 465-502 (672)
121 PHA02874 ankyrin repeat protei 22.9 44 0.00095 27.0 1.1 26 6-31 127-153 (434)
122 KOG1314|consensus 22.4 68 0.0015 26.1 2.0 42 83-128 331-384 (414)
123 PF07828 PA-IL: PA-IL-like pro 22.2 59 0.0013 22.0 1.4 17 83-99 15-31 (121)
124 PHA02922 hypothetical protein; 20.3 35 0.00077 23.9 0.1 15 6-20 10-24 (153)
No 1
>KOG0515|consensus
Probab=100.00 E-value=1.1e-35 Score=238.74 Aligned_cols=129 Identities=52% Similarity=0.973 Sum_probs=124.9
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCChhhhhhhhccccCCcccccchhhhhHhhhcccCCcceEEeeccCCCCCCC
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDE 85 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dy~~~~~~e 85 (137)
.|||||||++++|++| ++|++|||+|.||.+|++++|++.+++|..|++|++.++++++.++.+.+.|+|||+++..||
T Consensus 620 LHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vqesmG~mN~G~vYAlwdYeaqf~DE 699 (752)
T KOG0515|consen 620 LHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQESMGSMNKGVVYALWDYEAQFEDE 699 (752)
T ss_pred hhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHHHHhhcccccceeEEeeccccccccc
Confidence 5999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCCCCC
Q psy7685 86 LSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSAT 135 (137)
Q Consensus 86 Ls~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~~~ 135 (137)
|+|+.||.++||+++++.+..||+++++|++|+||.||+..++..+|+..
T Consensus 700 Lsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPriKprqr 749 (752)
T KOG0515|consen 700 LSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPRIKPRQR 749 (752)
T ss_pred ccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCccccchhh
Confidence 99999999999999888788899999999999999999999999988753
No 2
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.60 E-value=1.3e-15 Score=88.19 Aligned_cols=49 Identities=49% Similarity=0.971 Sum_probs=43.2
Q ss_pred EeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCee
Q psy7685 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG 125 (137)
Q Consensus 74 al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~ 125 (137)
|+|+|.++.++||+|++||+|.|+.+.+ .|||.|+.+|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~---~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSD---DGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESS---TSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCC---CCEEEEEECCEEEEECHHhCC
Confidence 7899999999999999999999998854 459999999999999999985
No 3
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.49 E-value=5.5e-14 Score=83.11 Aligned_cols=54 Identities=39% Similarity=0.751 Sum_probs=46.2
Q ss_pred ceEEeeccCCCCCCCCCCCCCCEEEEE-EecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685 71 AVYALYDYEANNTDELSFKTGECIIVL-RKGDENEREWWWSKLNNKEGYVPRNLLGLY 127 (137)
Q Consensus 71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl-~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~ 127 (137)
+++|++||.+..+++|+|++||+|.|+ +... .+||.++.+|+.||||.+||+++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~---~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDD---DGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECS---TSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecC---CCEEEEEECCcEEEEcHHHEEEC
Confidence 478999999999999999999999999 5543 36999999999999999999874
No 4
>KOG2070|consensus
Probab=99.41 E-value=7.8e-14 Score=112.40 Aligned_cols=56 Identities=34% Similarity=0.673 Sum_probs=51.7
Q ss_pred ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR 129 (137)
Q Consensus 71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~ 129 (137)
.++|-|.|.+.+.|||+|.+||+|+|.+.. ++|||.|.++|+.||||+|||.++..
T Consensus 19 vvrAkf~F~gsNnDELsf~KgDvItVTq~e---eGGWWEGTlng~TGWFPsnYV~eik~ 74 (661)
T KOG2070|consen 19 VVRAKFNFQGSNNDELSFSKGDVITVTQVE---EGGWWEGTLNGRTGWFPSNYVREIKS 74 (661)
T ss_pred EEEEEeecccCCCceeccccCCEEEEEEec---cCcceeccccCccCccchHHHHHHhh
Confidence 478999999999999999999999999985 55799999999999999999999863
No 5
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.36 E-value=1e-12 Score=75.53 Aligned_cols=46 Identities=52% Similarity=0.988 Sum_probs=40.1
Q ss_pred EEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcC
Q psy7685 73 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPR 121 (137)
Q Consensus 73 ~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~ 121 (137)
+|+|+|.+...++|+|++||+|.|++..+. +||.++ .+++.|+||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~---~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDD---GWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSS---SEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCC---CEEEEEECCCCcEEEeeC
Confidence 589999999999999999999999998654 599999 3479999995
No 6
>KOG2199|consensus
Probab=99.32 E-value=3.3e-13 Score=106.34 Aligned_cols=59 Identities=39% Similarity=0.628 Sum_probs=52.9
Q ss_pred cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685 67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128 (137)
Q Consensus 67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~ 128 (137)
....+++|||||++.+.+||+|++||+|+|++..+.+ ||+|+..+..|+||+|||...-
T Consensus 213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~---WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPN---WWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred ccchhhhhhhcccccCCCccceecCcEEEEcccCCcc---hhccccCCcccccchhhhhhhh
Confidence 3456799999999999999999999999999987666 9999999999999999997654
No 7
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.28 E-value=1.8e-11 Score=71.52 Aligned_cols=55 Identities=47% Similarity=0.825 Sum_probs=48.3
Q ss_pred cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC-CeeEEEcCCCeeec
Q psy7685 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLY 127 (137)
Q Consensus 70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~-g~~G~~P~~yv~~~ 127 (137)
..++|+|+|.+...++|+|++||+|.++... ..|||.++.. ++.||||.+|++.+
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~---~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKS---DDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcC---CCCeEEEEeCCCCEEEEchHHEEEC
Confidence 4578999999999999999999999999875 3469999955 99999999999763
No 8
>KOG1029|consensus
Probab=99.26 E-value=2.4e-12 Score=108.22 Aligned_cols=61 Identities=46% Similarity=0.760 Sum_probs=52.3
Q ss_pred cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec-CCCCCC
Q psy7685 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY-PRVQPS 133 (137)
Q Consensus 70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~-~~~~~~ 133 (137)
..+.|+|||.++.+|||+|++||+|.|+.++++. ||.|+.+|..|+||+|||... .+.+|.
T Consensus 1054 ~qviamYdY~AqndDELsF~kgdiI~Vlnkdepe---WW~Ge~ng~sGLFPSNYV~k~ttd~dps 1115 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPE---WWSGERNGKSGLFPSNYVQKQTTDGDPS 1115 (1118)
T ss_pred ceeEEeeccccCCcccccccCCCEEEecCCCChh---hhcccccCccccCccccccccccCCChh
Confidence 3567999999999999999999999999987554 999999999999999999544 444443
No 9
>KOG1118|consensus
Probab=99.26 E-value=3e-12 Score=98.15 Aligned_cols=62 Identities=31% Similarity=0.576 Sum_probs=56.1
Q ss_pred ccCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685 66 ILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130 (137)
Q Consensus 66 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~ 130 (137)
......|+|+|||++++..||.|++||+|+|+.+.+++ ||.|+..|..|+||.|||+++-+.
T Consensus 303 ~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIden---WyeG~~~g~sG~FPvnYv~vlvpl 364 (366)
T KOG1118|consen 303 QMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDEN---WYEGEKHGESGMFPVNYVEVLVPL 364 (366)
T ss_pred cccchhheeeeccCCCCCCccCcccCceeeehhhcCcc---hhhheecCccCccccceeEEeccC
Confidence 34556799999999999999999999999999998776 999999999999999999998654
No 10
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.24 E-value=3.8e-11 Score=69.30 Aligned_cols=51 Identities=49% Similarity=0.878 Sum_probs=45.0
Q ss_pred eEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCC-eeEEEcCCCee
Q psy7685 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRNLLG 125 (137)
Q Consensus 72 ~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g-~~G~~P~~yv~ 125 (137)
++|+|+|.+...++|+|.+||+|.+++.. ..|||.++..+ +.||||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~---~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKS---DDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcC---CCCeEEEEECCCCEEEEccccCc
Confidence 68999999999999999999999999874 34699999544 99999999985
No 11
>KOG4225|consensus
Probab=99.20 E-value=2.8e-11 Score=96.42 Aligned_cols=56 Identities=32% Similarity=0.662 Sum_probs=53.0
Q ss_pred ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR 129 (137)
Q Consensus 71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~ 129 (137)
.++|+|+|.++...||+|++||+|.|+++.+.+ |+.|+.+|+.|+||++||+.++.
T Consensus 232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~n---WyeGEhhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQN---WYEGEHHGRVGIFPASYVEILTP 287 (489)
T ss_pred hhhheeccccCCccccccCCCCEEEEEeeccCc---eeeeeecceecceechheeecCc
Confidence 378999999999999999999999999998877 99999999999999999999975
No 12
>KOG4226|consensus
Probab=99.15 E-value=7e-11 Score=89.65 Aligned_cols=58 Identities=26% Similarity=0.549 Sum_probs=52.4
Q ss_pred cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130 (137)
Q Consensus 70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~ 130 (137)
..+++.|.|.++.++||++.+|..|+|++++.++ ||+|..+|+.||||+|||.+.-+.
T Consensus 108 t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDG---WWrG~~ng~VGWFPSNYv~E~~ds 165 (379)
T KOG4226|consen 108 TPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDG---WWRGSYNGQVGWFPSNYVTEEVDS 165 (379)
T ss_pred CceEEEEeeccccccccccccCcEEEEEEeccCc---ceecccCCeeccccccceehhccc
Confidence 3488899999999999999999999999998655 999999999999999999987543
No 13
>KOG2996|consensus
Probab=99.13 E-value=3.3e-11 Score=99.17 Aligned_cols=59 Identities=29% Similarity=0.591 Sum_probs=52.2
Q ss_pred CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128 (137)
Q Consensus 69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~ 128 (137)
-+.++|-|||.+..-.+|+|++||+|.|+.+... ++|||+|+.+|+.||||++||++..
T Consensus 805 ~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~-d~GWWkGevngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 805 VGTAVARYDFCARDMRELSLKEGDVVKIYDKVGE-DQGWWKGEVNGRVGWFPSTYVEEDD 863 (865)
T ss_pred eeeeeeccccCCCchhhcccccCCEEEEehhccc-cCceecceecCcccccccccccccC
Confidence 3457788999999999999999999999988654 5899999999999999999998753
No 14
>KOG2856|consensus
Probab=99.12 E-value=1e-11 Score=97.21 Aligned_cols=56 Identities=38% Similarity=0.622 Sum_probs=50.1
Q ss_pred cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC-CeeEEEcCCCeeec
Q psy7685 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLY 127 (137)
Q Consensus 70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~-g~~G~~P~~yv~~~ 127 (137)
..++|||||.+++.+||+|+.||.|..+...+ +.||.+||++ |+.|++|.|||+.+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeD--eqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEED--EQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCcc--ccccccccccCCcccccchhhhhcc
Confidence 46899999999999999999999999887644 7899999955 99999999999865
No 15
>KOG4226|consensus
Probab=99.08 E-value=7.2e-11 Score=89.60 Aligned_cols=59 Identities=34% Similarity=0.719 Sum_probs=53.1
Q ss_pred cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR 129 (137)
Q Consensus 70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~ 129 (137)
..++|||+|......||+|.+||.+.|+++.. .++.||+++ ..|+.|+||.|||.++.+
T Consensus 192 ~vVvaLYsFsssndeELsFeKGerleivd~Pe-~DPdWwkarn~~G~vGLVPrNYv~vl~d 251 (379)
T KOG4226|consen 192 HVVVALYSFSSSNDEELSFEKGERLEIVDKPE-NDPDWWKARNARGQVGLVPRNYVVVLSD 251 (379)
T ss_pred EEEEEEecccCCChhhcccccCceeEeccCCC-CCchHHhhcccCCccceeecceEEEecc
Confidence 45789999999999999999999999999854 467899999 899999999999999864
No 16
>KOG0162|consensus
Probab=99.08 E-value=7.3e-11 Score=99.18 Aligned_cols=56 Identities=46% Similarity=0.851 Sum_probs=50.6
Q ss_pred CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 127 (137)
Q Consensus 69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~ 127 (137)
.+.+.|+|+|.+++.+||+|++||+|.|+.++ ..|||.|+.+|++||||.+||.++
T Consensus 1051 ~p~~~A~Y~y~gq~~dEls~~~~diIei~~ed---pSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1051 NPVCEALYDYPGQDVDELSFKKGDIIEIMRED---PSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred CcceeeeccCCCCCcccccccCCCEEEEeccC---CCcchhhccCCccccccccccccC
Confidence 36699999999999999999999999999875 457999999999999999999753
No 17
>KOG4348|consensus
Probab=99.04 E-value=1.3e-10 Score=92.98 Aligned_cols=59 Identities=32% Similarity=0.653 Sum_probs=54.1
Q ss_pred CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128 (137)
Q Consensus 69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~ 128 (137)
..+|+++|.|+++.++||.|+.||+|.+|.+ +.++-|||.|+++|++|.||-|+|+.++
T Consensus 261 Keycrv~F~Ye~qndDELt~KEgdil~lItK-~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 261 KEYCRVKFVYEPQNDDELTLKEGDILILITK-NCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred hhheeeeeeecCCCccceeeccccEEEEecc-cccccceeeeeecCccccCCchhhhhcC
Confidence 3569999999999999999999999999987 4557899999999999999999999886
No 18
>KOG1029|consensus
Probab=98.92 E-value=6e-10 Score=94.08 Aligned_cols=61 Identities=36% Similarity=0.635 Sum_probs=53.9
Q ss_pred CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130 (137)
Q Consensus 69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~ 130 (137)
..+|+|||.|++.+.+|++|..||+|.|-.. ..+++||..|..+|+.||||.+||+.++..
T Consensus 693 ~vkyrAly~FeaRs~dEisf~pGDII~V~es-q~aEPGWlaGel~gktGWFPenyvEki~~~ 753 (1118)
T KOG1029|consen 693 TVKYRALYPFEARSHDEISFEPGDIIIVFES-QAAEPGWLAGELRGKTGWFPENYVEKIPAV 753 (1118)
T ss_pred eEEEeeecccccCCcccccccCCCEEEEehh-ccCCcccccceeccccCcCcHHHHhhcccC
Confidence 4568999999999999999999999988765 445789999999999999999999998743
No 19
>KOG4348|consensus
Probab=98.86 E-value=3.9e-10 Score=90.24 Aligned_cols=59 Identities=32% Similarity=0.633 Sum_probs=53.2
Q ss_pred CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685 68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR 129 (137)
Q Consensus 68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~ 129 (137)
....|++.|.|.+++++||.|+.||+|.|+....+ |||.|.++|..|+||+|+|.+++.
T Consensus 99 ~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEe---GWw~G~Lngk~GmFPsNFVkel~~ 157 (627)
T KOG4348|consen 99 QARICVVTFAYSPQNDDELELKVGDIIELISEVEE---GWWKGKLNGKVGMFPSNFVKELPT 157 (627)
T ss_pred cceeEEEEEeecCCCCceeeeeeccHHHhhhHhhh---hhhhceecCcccccchhhceecCC
Confidence 34569999999999999999999999999987744 599999999999999999999864
No 20
>KOG1264|consensus
Probab=98.81 E-value=2e-09 Score=91.56 Aligned_cols=60 Identities=33% Similarity=0.585 Sum_probs=52.4
Q ss_pred CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCC-eeEEEcCCCeeecCCC
Q psy7685 68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRNLLGLYPRV 130 (137)
Q Consensus 68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g-~~G~~P~~yv~~~~~~ 130 (137)
+...++|||+|.++.++||+|-+|-+|+.+++. ++|||+|...| ..+|||+|||+++...
T Consensus 773 ~~vt~kAL~~Yka~r~DELSFpk~aiItnv~ke---eg~wWrGdYGg~iq~wfPsnyVeei~~~ 833 (1267)
T KOG1264|consen 773 PQVTVKALYDYKAKRSDELSFPKGAIITNVSKE---EGGWWRGDYGGRIQQWFPSNYVEEISTA 833 (1267)
T ss_pred cchhhhhhhccccCCcccccccccceeEeeecc---CCceeecccccceeeeccHHHhhhhccc
Confidence 446789999999999999999999999999985 45699999664 5899999999999663
No 21
>KOG4225|consensus
Probab=98.80 E-value=3.2e-09 Score=84.84 Aligned_cols=53 Identities=34% Similarity=0.584 Sum_probs=48.9
Q ss_pred ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeee
Q psy7685 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGL 126 (137)
Q Consensus 71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~ 126 (137)
.++|||.|.++..+||.|..||+|.|+++++++ |+.|. .+|..|.||.|||+.
T Consensus 434 ~yrAly~Y~pqnedeLEl~egDii~VmeKcddg---WfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 434 KYRALYSYRPQNEDELELREGDIIDVMEKCDDG---WFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred cceeccccCCCCchhheeccCCEEeeeecccCc---ceeccceecccccccCcccccc
Confidence 379999999999999999999999999998765 99994 899999999999975
No 22
>KOG4792|consensus
Probab=98.79 E-value=1.5e-09 Score=80.52 Aligned_cols=57 Identities=32% Similarity=0.685 Sum_probs=50.7
Q ss_pred CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecC
Q psy7685 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP 128 (137)
Q Consensus 69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~ 128 (137)
...++++|||.+...++|.|++|+++.|+++..+. ||.++ ..|+.|.+|.+||+...
T Consensus 124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeq---WW~Arns~Gk~GmIPvpYVe~~~ 181 (293)
T KOG4792|consen 124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQ---WWNARNSEGKRGMIPVPYVEKYR 181 (293)
T ss_pred hhheeeeeccCCCccccCCcccCcEEEEecCcHHH---hhhhhccCCcccceechHHHhhh
Confidence 34577899999999999999999999999987554 99999 89999999999998763
No 23
>KOG2546|consensus
Probab=98.74 E-value=5.2e-09 Score=83.41 Aligned_cols=56 Identities=36% Similarity=0.643 Sum_probs=51.0
Q ss_pred cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128 (137)
Q Consensus 70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~ 128 (137)
.+++++|||.+...+||+|.+|-+|.|+.+.++ |||.|..+|..||||.|||+.+.
T Consensus 424 EkVv~iydy~~~KddeLsf~E~ailyv~kkndd---gw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 424 EKVVAIYDYTADKDDELSFAEGAILYVLKKNDD---GWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHHHhhcccccccccccccccccEEEEEEecCC---cchhheecCcceeccCccccccc
Confidence 358899999999999999999999999999654 49999999999999999998774
No 24
>KOG1843|consensus
Probab=98.70 E-value=1.1e-08 Score=81.28 Aligned_cols=59 Identities=34% Similarity=0.715 Sum_probs=52.3
Q ss_pred cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeee
Q psy7685 67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126 (137)
Q Consensus 67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~ 126 (137)
+....++|+|+|..+...+|+|++||+|+++.+.+. ...||.++.++++|+||.|||+.
T Consensus 414 l~~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s-~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 414 LEPNIATALYSFAGEQPGDLSFQKGDIITILKKSDS-ANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred cCcceeeeeehhccCCCCCcccccCceEEEecCCcc-hhhHHHhhccccccccccceecc
Confidence 344579999999999999999999999999988654 46699999999999999999974
No 25
>KOG3655|consensus
Probab=98.61 E-value=1.3e-08 Score=82.05 Aligned_cols=58 Identities=31% Similarity=0.630 Sum_probs=52.2
Q ss_pred CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecC
Q psy7685 68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP 128 (137)
Q Consensus 68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~ 128 (137)
....++|+|||++..+.|++|..++.|++|...++ |||.|. -.|+.|+||.|||++++
T Consensus 426 ~~q~A~A~~dyqAAddtEisf~p~d~it~Id~vde---gww~g~~pdG~~glfPaNyV~li~ 484 (484)
T KOG3655|consen 426 EPQTARALYDYQAADDTEISFDPPDAITLIDQVDE---GWWTGQGPDGEVGLFPANYVELIE 484 (484)
T ss_pred cCCCccccccccccCCcccccCCccccccccccCC---ccccccCCCCCcCcccccccccCC
Confidence 56678999999999999999999999999998864 599999 78999999999998763
No 26
>KOG3875|consensus
Probab=98.61 E-value=9.3e-09 Score=79.22 Aligned_cols=60 Identities=32% Similarity=0.494 Sum_probs=50.2
Q ss_pred cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCC--CeEEEE-e-CCeeEEEcCCCeeecCC
Q psy7685 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENER--EWWWSK-L-NNKEGYVPRNLLGLYPR 129 (137)
Q Consensus 70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~--gWw~g~-~-~g~~G~~P~~yv~~~~~ 129 (137)
..++|+|||.+.++.||+|++||++.|..+.+.... .||..+ . .+..||||.|||+.+..
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 568999999999999999999999999887554222 388887 4 67789999999999865
No 27
>KOG1702|consensus
Probab=98.44 E-value=1.7e-07 Score=68.59 Aligned_cols=58 Identities=28% Similarity=0.569 Sum_probs=50.5
Q ss_pred cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeec
Q psy7685 67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLY 127 (137)
Q Consensus 67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~ 127 (137)
..+..++|+|||.++..++++|.-||.|.-++..+++ |..|. .+|..|..|+||++-+
T Consensus 205 ~~gktyra~ydysaqdedevsF~dgd~ivnvq~iddG---Wmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 205 CTGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDG---WMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred CCCccchhhccCcccCcceeEEecCCeEEEEEeccCC---ceeeEEEeccccCCCchhheeeC
Confidence 3456789999999999999999999999888887654 98887 8899999999999853
No 28
>KOG3601|consensus
Probab=98.38 E-value=1.8e-07 Score=68.68 Aligned_cols=55 Identities=25% Similarity=0.530 Sum_probs=49.9
Q ss_pred cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 127 (137)
Q Consensus 70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~ 127 (137)
.+..++|||.++.+.+|.|++|+++.|+...+.. ||.|+..|+.|+||++|+...
T Consensus 164 ~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~---ww~Gs~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 164 YYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPF---WWFGSKLGRAGIFPAGYVAPS 218 (222)
T ss_pred hhhhhcCCCCCCCchhhccccCCcceeecCCCcc---hhhccccCceeeecCcccccc
Confidence 4567999999999999999999999999998776 999999999999999998654
No 29
>KOG4278|consensus
Probab=98.34 E-value=4.8e-07 Score=76.34 Aligned_cols=58 Identities=31% Similarity=0.506 Sum_probs=49.7
Q ss_pred CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR 129 (137)
Q Consensus 69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~ 129 (137)
...++|||||.+.++..|++.+|+.+.|+.-.. ++.|..++ .+|+ ||||+||+..+..
T Consensus 90 pNLFVALYDFvasGdntLSitKGeklRvLGYN~--NgEWcEartKNGq-GWVPSNyItPvNS 148 (1157)
T KOG4278|consen 90 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNK--NGEWCEARTKNGQ-GWVPSNYITPVNS 148 (1157)
T ss_pred CceeEeeeeeeccccceeeeecCceEEEeeecC--CCcceeecccCCC-ccccccccccccc
Confidence 346899999999999999999999999998765 34698888 5566 9999999988754
No 30
>KOG3632|consensus
Probab=98.12 E-value=2.4e-06 Score=74.30 Aligned_cols=59 Identities=31% Similarity=0.594 Sum_probs=49.7
Q ss_pred CCcceEEeeccCCC--------CCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685 68 NNGAVYALYDYEAN--------NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128 (137)
Q Consensus 68 ~~~~~~al~dy~~~--------~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~ 128 (137)
+...++|+|||++. ...||.|++|++|.|+..-| ..|++.|+.+|+.|+||+|+|.+++
T Consensus 1137 parifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkD--adgFY~GE~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1137 PARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKD--ADGFYMGELNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred cceeeEeeeccCccccCCCCChhhhccccccCcEEEEecccc--ccceeeccccccccccccccccccc
Confidence 34568999999873 34689999999999997654 4489999999999999999999875
No 31
>KOG3557|consensus
Probab=98.03 E-value=1.1e-06 Score=73.40 Aligned_cols=60 Identities=40% Similarity=0.707 Sum_probs=52.0
Q ss_pred CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCCC
Q psy7685 68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQ 131 (137)
Q Consensus 68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~ 131 (137)
...+++.+|||.+.+..||++.+||++.|+.. ..+||+++ ..|+.|+||+|.+..++...
T Consensus 499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d----~R~WW~~kn~~G~~GyvP~nIL~~~~~~~ 559 (721)
T KOG3557|consen 499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDD----GRKWWKVKNGHGRAGYVPSNILAPLQPEH 559 (721)
T ss_pred cceeeeeehhhhcccchhhhhhhhhhhhhhhc----cccceeccCccCCCCCcchhhhccCCCcc
Confidence 34478899999999999999999999999864 45699999 78999999999999886543
No 32
>KOG2222|consensus
Probab=97.98 E-value=9.8e-07 Score=72.08 Aligned_cols=57 Identities=28% Similarity=0.581 Sum_probs=50.8
Q ss_pred CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128 (137)
Q Consensus 69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~ 128 (137)
..+++|+.||.....+||.|+++|+|+|+...++- .|.|+.+|-+||||..+|+.+.
T Consensus 548 ~krakal~df~r~dddelgfrkndiitiisekdeh---cwvgelnglrgwfpakfvelld 604 (848)
T KOG2222|consen 548 AKRAKALHDFAREDDDELGFRKNDIITIISEKDEH---CWVGELNGLRGWFPAKFVELLD 604 (848)
T ss_pred hHHHHHHhhhhhccccccccccccEEEEeecCCcc---eeeeccccccccchHHHHHHHH
Confidence 34578999999999999999999999999876554 9999999999999999998774
No 33
>KOG3523|consensus
Probab=97.98 E-value=7.2e-07 Score=74.13 Aligned_cols=59 Identities=20% Similarity=0.432 Sum_probs=52.3
Q ss_pred CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685 68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR 129 (137)
Q Consensus 68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~ 129 (137)
+..++.+...|.+..+++|++..+|++.|+++..+| |..|. .+|..||||..|+++|..
T Consensus 607 dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DG---Wl~GeRl~Dge~GWFP~~~veeI~~ 667 (695)
T KOG3523|consen 607 DCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDG---WLEGERLRDGERGWFPSSYVEEITN 667 (695)
T ss_pred CCChhheeeccccCCCceeeeehhhhhhhhhcCCCc---cccccccccCccCcchHHHHHHhcC
Confidence 445678889999999999999999999999997654 99998 789999999999998854
No 34
>KOG2528|consensus
Probab=97.97 E-value=3.1e-06 Score=68.16 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=52.0
Q ss_pred cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCC
Q psy7685 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 130 (137)
Q Consensus 70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~ 130 (137)
..++++|||......|++...|+++.+..... ..|||.++ ..|.+|+||..||+++...
T Consensus 3 sk~RamyDf~~E~~sElsi~~~evl~i~~e~~--~~GwLeg~Nsrge~GlfPa~yVeV~~~a 62 (490)
T KOG2528|consen 3 SKARAMYDFQSEGHSELSIWEGEVLSITSEDV--IEGWLEGSNSRGERGLFPASYVEVTRLA 62 (490)
T ss_pred cchhhhcchhhcccccccccccceeeecCccc--ccccccCCCccCccCCCcccceeeeccc
Confidence 35789999999999999999999999988754 45899999 8899999999999998643
No 35
>KOG4773|consensus
Probab=97.70 E-value=4.8e-06 Score=65.31 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=72.4
Q ss_pred Cchhhhhh-cccceecccccCChhhhhhhhccccCC---cccccchhhhhHhhhcccCCcceEEeeccCCCCCCCCCCCC
Q psy7685 15 TLAVCSLS-FVLYCIFATTHSDHETAAVKCEEDEEG---FEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKT 90 (137)
Q Consensus 15 ~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~al~dy~~~~~~eLs~~~ 90 (137)
.+|+-++. ++...++....-|.+...+........ +-.+..+..+ .....+....+.+++||.+....||.|++
T Consensus 119 slPi~~l~~p~l~~fffvsp~D~~dVpeai~r~~Prt~~~ks~~~skas--ni~~~~~~q~~~a~~df~gns~~EL~l~a 196 (386)
T KOG4773|consen 119 SLPIGRLGGPGLRPFFFVSPYDSEDVPEAIRRLRPRTRKWKSDGVSKAS--NIVLGMAAQRAEASFDFPGNSKLELNLVA 196 (386)
T ss_pred hcchhhcCCCCceeeeeeccchHhhhhHHHHhcCchhhhccccccCccc--cccchhhhHHHHhhccCCCCccceeeeeh
Confidence 45677777 777788777777754444333222111 0000000000 01111233557889999999999999999
Q ss_pred CCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685 91 GECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128 (137)
Q Consensus 91 Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~ 128 (137)
|+++.++.++ +.+||.|+..+.+||+|..|+..+.
T Consensus 197 gdV~~~~~r~---ek~W~~gk~R~~~g~yp~sF~~~ld 231 (386)
T KOG4773|consen 197 GDVEFLLSRD---EKYWLLGKVRGLTGYYPDSFVKQLD 231 (386)
T ss_pred hhHHHHHhhc---ccceeeeeeccccccccHHhhhhhc
Confidence 9999998886 4459999999999999999998874
No 36
>KOG4792|consensus
Probab=97.58 E-value=0.00021 Score=53.48 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=47.3
Q ss_pred ceEEeeccCCC--CCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685 71 AVYALYDYEAN--NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP 132 (137)
Q Consensus 71 ~~~al~dy~~~--~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~ 132 (137)
+++++.+-.+. ....|.+++||+|.|.+... .|.|+|+++|+.|.||.+||+......|
T Consensus 229 ~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ni---nGqwegElnGk~G~fPfThvrf~d~~~~ 289 (293)
T KOG4792|consen 229 YARVIQKRVPNAYDKTALALEVGDIVKVTKKNI---NGQWEGELNGKIGHFPFTHVRFTDVQNP 289 (293)
T ss_pred heeeehhcCCCccChhhhhhhcCcEEEEEeecc---CceeeeeecCccccccceeEEeeccCCc
Confidence 45666665543 45679999999999998864 4599999999999999999998865444
No 37
>KOG0197|consensus
Probab=97.53 E-value=2.8e-05 Score=63.64 Aligned_cols=56 Identities=34% Similarity=0.799 Sum_probs=47.1
Q ss_pred CcceEEeeccCCCCCCCCCCCCCCE-EEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeec
Q psy7685 69 NGAVYALYDYEANNTDELSFKTGEC-IIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLY 127 (137)
Q Consensus 69 ~~~~~al~dy~~~~~~eLs~~~Gd~-i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~ 127 (137)
...++|+|+|.+..+.+|+|.+|++ ..+++.. +..||+++ ..+..|++|.|||...
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~---~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETT---NGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccC---ChhHHHHHHhhcCCCCcCcCceeecc
Confidence 4568999999999999999999999 6666553 34599988 4789999999999875
No 38
>KOG3725|consensus
Probab=97.43 E-value=3.1e-05 Score=58.87 Aligned_cols=58 Identities=33% Similarity=0.497 Sum_probs=51.0
Q ss_pred CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 127 (137)
Q Consensus 69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~ 127 (137)
..+++++|||++....||++-..++|+|...... +..|..|+..++.|-+|.+|++.+
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGM-D~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGM-DADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCC-ChHHhhhhhcCCCCCcchhHHHhc
Confidence 4568999999999999999999999999876543 466999999999999999999865
No 39
>KOG4575|consensus
Probab=97.43 E-value=0.00017 Score=60.78 Aligned_cols=54 Identities=26% Similarity=0.524 Sum_probs=45.0
Q ss_pred ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--e-CCeeEEEcCCCeeecC
Q psy7685 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--L-NNKEGYVPRNLLGLYP 128 (137)
Q Consensus 71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~-~g~~G~~P~~yv~~~~ 128 (137)
.++|+|.+.++..++|.|..||+|.+++.. .|||++. . +...|+||+|+|..+.
T Consensus 10 ~vrA~y~w~ge~eGdl~f~egDlie~trI~----dgkwwi~lhrNk~~~g~fpsNFvhcLd 66 (874)
T KOG4575|consen 10 MVRALYAWPGEREGDLKFTEGDLIEQTRIE----DGKWWILLHRNKDEDGLFPSNFVHCLD 66 (874)
T ss_pred eEEeeccCCCCcccccceecccceeEEeec----cceeeeeeeecccccccCcccceeecc
Confidence 589999999999999999999999998873 3577665 3 4567999999997664
No 40
>KOG3771|consensus
Probab=97.43 E-value=6.3e-05 Score=61.13 Aligned_cols=56 Identities=34% Similarity=0.322 Sum_probs=45.5
Q ss_pred CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeee
Q psy7685 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126 (137)
Q Consensus 69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~ 126 (137)
.-+++++|||.++..++|+|+.|++|.|+...+ ...||.|++.|..+-++.+|+..
T Consensus 400 ~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~--~~e~~eg~~mg~ke~~~~~~~~~ 455 (460)
T KOG3771|consen 400 LYKVKALHDYAAQDTDELSFEAGDVILVIPSDN--PEEQDEGWLMGVKESDWNGLFPL 455 (460)
T ss_pred ccceeccccccccccccccccCCCEEEEecCCC--ccchhhHHHhhhcccccccceec
Confidence 345889999999999999999999999998543 45799999877776666666643
No 41
>KOG1451|consensus
Probab=97.41 E-value=0.00015 Score=60.69 Aligned_cols=57 Identities=30% Similarity=0.518 Sum_probs=48.1
Q ss_pred CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 127 (137)
Q Consensus 69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~ 127 (137)
..++.++|.-.+....+++|..|.++.-+.... +.||..|+++|.+|++|.|||+.+
T Consensus 756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~--e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESN--EDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred cccccceeccCCCCcccccccCcceeeeecccC--CCCceeeecCCCcccCcccccCcC
Confidence 445778888888899999999999998666443 558999999999999999999853
No 42
>KOG0609|consensus
Probab=97.39 E-value=4.6e-05 Score=62.84 Aligned_cols=55 Identities=29% Similarity=0.616 Sum_probs=44.5
Q ss_pred cceEEeeccCCCCCC-------CCCCCCCCEEEEEEecCCCCCCeEEEEeC-----CeeEEEcCCCeeec
Q psy7685 70 GAVYALYDYEANNTD-------ELSFKTGECIIVLRKGDENEREWWWSKLN-----NKEGYVPRNLLGLY 127 (137)
Q Consensus 70 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~-----g~~G~~P~~yv~~~ 127 (137)
.+++|+|||++..++ .|+|++||++.|+.+++.+ ||.++.. +..|++|+..++..
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~n---WWQA~~~~~~~~~~AGLiPS~~~qer 281 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPN---WWQARRVGDPFGGLAGLIPSKELQER 281 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcc---hhhhhcccCccccccccccCHHHHHH
Confidence 568899999987665 4899999999999998777 9999832 45799998766543
No 43
>KOG3601|consensus
Probab=97.16 E-value=4.1e-05 Score=56.42 Aligned_cols=53 Identities=32% Similarity=0.645 Sum_probs=45.6
Q ss_pred eEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeee
Q psy7685 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126 (137)
Q Consensus 72 ~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~ 126 (137)
++++++|.+...+||+|.+|+.|.++...+ +..|.+.++.|..|++|.||.+.
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d--~~nw~~ael~g~~g~~P~Nai~~ 55 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMED--DINWYKAELDGPEGFIPKNAIRM 55 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHH--hhhhhhHhhcCccccCccccccc
Confidence 567899999999999999999999988754 33488888999999999999854
No 44
>KOG4429|consensus
Probab=96.95 E-value=0.00023 Score=55.12 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=47.7
Q ss_pred ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128 (137)
Q Consensus 71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~ 128 (137)
.+.++|.|.+...++|...+|+++.+-++. ..|||.|++.|..|-||..|+++.+
T Consensus 365 lcdafYSfqarqddel~~e~gditif~Ekk---eeg~~f~rl~gd~~hf~Aa~iEea~ 419 (421)
T KOG4429|consen 365 LCDAFYSFQARQDDELGGEIGDITIFDEKK---EEGPTFCRLLGDFEHFHAAEIEEAL 419 (421)
T ss_pred HhhhhhccccccccccCCcccceeeecCcc---cCCCceeeeccccCCCcHHHHHHhc
Confidence 478999999999999999999998776654 4569999999999999999988754
No 45
>KOG3775|consensus
Probab=96.76 E-value=0.0007 Score=54.00 Aligned_cols=57 Identities=18% Similarity=0.348 Sum_probs=49.3
Q ss_pred cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR 129 (137)
Q Consensus 70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~ 129 (137)
..-++++-|.+..++||.+..||-|.|-...++- |.+|. .+|++|+||+.|+-+++.
T Consensus 263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~---W~~G~NlRTG~~GIFPA~ya~evd~ 321 (482)
T KOG3775|consen 263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEADDF---WFEGFNLRTGERGIFPAFYAHEVDG 321 (482)
T ss_pred hhhhhhhhccCCCcceeeeecCCeeEeeecccch---hhccccccccccccccceeEEecCC
Confidence 4467899999999999999999999888776655 88888 889999999999988853
No 46
>KOG3565|consensus
Probab=96.39 E-value=0.00079 Score=57.47 Aligned_cols=62 Identities=24% Similarity=0.444 Sum_probs=53.6
Q ss_pred ccCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685 66 ILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR 129 (137)
Q Consensus 66 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~ 129 (137)
.+..+++.|+|.|.++.++++++..|+++.+++.+. +.||-+++ .++..|+||.+|+.....
T Consensus 575 ~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~--g~gwt~~r~~~~~~~g~~Ptsyl~~~~~ 638 (640)
T KOG3565|consen 575 SPPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDK--GDGWTRGRLEPNGEKGYVPTSYLDVTET 638 (640)
T ss_pred CCCccceecccCcCCCCCCccccCcchhHHHHhhcc--cCCCCCCCCCCCCcCCCCCccccccccc
Confidence 345677899999999999999999999999998855 45899998 788999999999987654
No 47
>PF13606 Ank_3: Ankyrin repeat
Probab=96.36 E-value=0.0014 Score=33.54 Aligned_cols=24 Identities=0% Similarity=-0.227 Sum_probs=21.7
Q ss_pred hhhhhhcCCCchhhhhh-cccceec
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIF 29 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~ 29 (137)
..|.|+++|+.++++.| ++|+++.
T Consensus 5 ~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 5 PLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 36999999999999999 9999874
No 48
>KOG3632|consensus
Probab=96.15 E-value=0.0081 Score=53.21 Aligned_cols=60 Identities=22% Similarity=0.385 Sum_probs=49.1
Q ss_pred cceEEeeccCCC------CCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCCC
Q psy7685 70 GAVYALYDYEAN------NTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQ 131 (137)
Q Consensus 70 ~~~~al~dy~~~------~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~ 131 (137)
..+.|.|+|.+. ...||.+..|+.|+|....+ +.|++.|+ ..|++|++|+|+|+.+++.+
T Consensus 448 q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmd--EdgfyegeL~dgrrglvPsnFVe~v~d~~ 514 (1335)
T KOG3632|consen 448 QPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMD--EDGFYEGELRDGRRGLVPSNFVEVVTDTK 514 (1335)
T ss_pred ceEEEEEeccCCcCCCCCCccccccccceEEEEecCCC--ccccceeeeecccccCCCchheEEeccch
Confidence 447889998872 24579999999999987655 45899999 88999999999999987543
No 49
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=95.30 E-value=0.0085 Score=30.92 Aligned_cols=26 Identities=12% Similarity=-0.226 Sum_probs=23.3
Q ss_pred hhhhhcCCCchhhhhh-cccceecccc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATT 32 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~ 32 (137)
.|.||..++.+++++| ++|+++.+.+
T Consensus 6 Lh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 6 LHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp HHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred HHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 6999999999999999 9999887653
No 50
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=95.21 E-value=0.041 Score=31.53 Aligned_cols=37 Identities=24% Similarity=0.578 Sum_probs=28.8
Q ss_pred CCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCee
Q psy7685 87 SFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLG 125 (137)
Q Consensus 87 s~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~ 125 (137)
.+..|+.|.++..... .+|++.+ .+|..||+...||+
T Consensus 18 ~l~~g~~v~v~~~~~~--~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGD--GNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT----EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCC--cEEEEEECcCCcEEEEEccccC
Confidence 4577899999987542 2399995 89999999999874
No 51
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=95.21 E-value=0.029 Score=35.96 Aligned_cols=43 Identities=30% Similarity=0.367 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeec
Q psy7685 82 NTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLY 127 (137)
Q Consensus 82 ~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~ 127 (137)
+.-+|.+++|+++.|++..+.+ -|.|| ..|+-|+|+.+++-..
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~---kvlCRN~~GKYGYV~~~~L~~~ 72 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDN---KVLCRNSEGKYGYVLRSHLLPL 72 (89)
T ss_dssp -TTB----TT-B-EEEEESSSS---EEEEEETTTEEEEEEGGGS---
T ss_pred CcccCCcCCCCEEEEEEeCCCC---eEEEeCCCCceeEEEHHHccCC
Confidence 4568999999999999987544 89999 8899999999887544
No 52
>KOG0199|consensus
Probab=94.97 E-value=0.031 Score=48.60 Aligned_cols=53 Identities=23% Similarity=0.423 Sum_probs=42.8
Q ss_pred ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCee
Q psy7685 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125 (137)
Q Consensus 71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~ 125 (137)
.++|.-+|+....+.|.|++||.|+||+.... +-||+|. .+++.|.||.+-|-
T Consensus 376 p~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a--~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 376 PAVARETYDSIEPGALHLTKGDEIVVIEGSGA--GYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred CceeeeeccccCCCceeeccCCeEEEEecCCc--cceeeccccccceecccCcceee
Confidence 35555667778899999999999999987542 3499996 78999999998776
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.81 E-value=0.036 Score=41.12 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=33.3
Q ss_pred CCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685 87 SFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR 129 (137)
Q Consensus 87 s~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~ 129 (137)
.+..|+.++|+...+ +.+|.+.+ .+|++|||+..|+...+.
T Consensus 49 ~l~~G~~v~vl~~~~--~~~w~~Vr~~~G~~GWV~~~~Ls~~p~ 90 (206)
T PRK10884 49 TLNAGEEVTLLQVNA--NTNYAQIRDSKGRTAWIPLKQLSTTPS 90 (206)
T ss_pred EEcCCCEEEEEEEcC--CCCEEEEEeCCCCEEeEEHHHhcCCcc
Confidence 467899999998754 24699999 789999999999876654
No 54
>KOG0040|consensus
Probab=93.81 E-value=0.00083 Score=61.37 Aligned_cols=57 Identities=28% Similarity=0.685 Sum_probs=49.5
Q ss_pred ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130 (137)
Q Consensus 71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~ 130 (137)
.+.|+|+|...++.+.+.++||+++++.....+ ||.++.+.+.|++|..||+.+.+.
T Consensus 970 ~v~alyd~q~kSprev~mKkgDvltll~s~nkd---wwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 970 CVLALYDYQEKSPREVTMKKGDVLTLLNSINKD---WWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccc---cccchhhhhcCcchHHHHHHhccC
Confidence 467899999999999999999999887665444 999999999999999999987554
No 55
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=93.43 E-value=0.2 Score=29.28 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=26.9
Q ss_pred CCCCCCEEEEEEecCCCCCCeEEEEe-CCeeEEEcCCCe
Q psy7685 87 SFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLL 124 (137)
Q Consensus 87 s~~~Gd~i~vl~~~~~~~~gWw~g~~-~g~~G~~P~~yv 124 (137)
.+..|+.+.++..... +|.+.+. +|..||++..++
T Consensus 26 ~l~~g~~v~i~~~~~~---~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 26 TLKKGDKVKVLGVDGQ---DWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred EecCCCEEEEEEccCC---ceEEEEcCCCCEEEEEeeee
Confidence 4678999999876321 5999995 599999977655
No 56
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=93.29 E-value=0.25 Score=28.43 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=27.6
Q ss_pred CCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCe
Q psy7685 86 LSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124 (137)
Q Consensus 86 Ls~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv 124 (137)
..+.+|..+.|+.. ..+|.+.+.+|..||++...|
T Consensus 19 ~~l~~g~~v~v~~~----~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIEC----RGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEEc----cCCeEEEEECCeEEeEEeeec
Confidence 45678888888854 335999999999999988765
No 57
>KOG2996|consensus
Probab=91.36 E-value=0.11 Score=44.21 Aligned_cols=44 Identities=20% Similarity=0.526 Sum_probs=35.1
Q ss_pred CCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685 84 DELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR 129 (137)
Q Consensus 84 ~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~ 129 (137)
.-|.+..|+++.++.-+. ++.||.|+ .++..|+||++-|...+.
T Consensus 625 P~l~~~~gdvlel~~~d~--~s~~w~gr~~~sr~sg~fpss~vkp~~~ 670 (865)
T KOG2996|consen 625 PRLVLQEGDVLELLKGDA--ESSWWEGRNHGSRESGNFPSSTVKPCPS 670 (865)
T ss_pred CceEecCCceeehhcCCC--CCcccccCCccCCccCCCCccccCcCCC
Confidence 358899999998876543 55799999 567789999999987654
No 58
>KOG3812|consensus
Probab=90.31 E-value=0.13 Score=41.03 Aligned_cols=47 Identities=19% Similarity=0.555 Sum_probs=33.8
Q ss_pred eEEeeccCCCCCC-------CCCCCCCCEEEEEEecCCCCCCeEEEE--e-CCeeEEEcC
Q psy7685 72 VYALYDYEANNTD-------ELSFKTGECIIVLRKGDENEREWWWSK--L-NNKEGYVPR 121 (137)
Q Consensus 72 ~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~-~g~~G~~P~ 121 (137)
+++..+|.+.-.+ .++|...|.|-|-++-..+ ||.|+ . .+..||+|+
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnD---WWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNND---WWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccc---hhHHHHhhcCCccccccc
Confidence 3455678765443 4788899998888776444 99999 3 345799996
No 59
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=89.77 E-value=0.14 Score=29.56 Aligned_cols=33 Identities=12% Similarity=-0.196 Sum_probs=21.4
Q ss_pred hhhhhhcCCCchhhhhh-cccceecccccCChhhh
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETA 39 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~ 39 (137)
-.|.||..|+.+++++| +.|+++....... .|+
T Consensus 19 ~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G-~Tp 52 (56)
T PF13857_consen 19 PLHWAARYGHSEVVRLLLQNGADPNAKDKDG-QTP 52 (56)
T ss_dssp HHHHHHHHT-HHHHHHHHHCT--TT---TTS---H
T ss_pred HHHHHHHcCcHHHHHHHHHCcCCCCCCcCCC-CCH
Confidence 36999999999999999 9999998776653 444
No 60
>KOG3705|consensus
Probab=88.86 E-value=0.54 Score=38.44 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=40.7
Q ss_pred CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeee
Q psy7685 68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGL 126 (137)
Q Consensus 68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~ 126 (137)
+.....++++..++..+|+.++.||+|.|-...=+ |.-+|. ..++.|+||+--|++
T Consensus 508 nAHn~ivi~aH~prt~~ei~l~vGD~vgvAGNHWd---GySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 508 NAHNVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWD---GYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred cccceEEEEecCCCcccccCcccCCeeeecccccc---cccccccccccccCCCccceeee
Confidence 34457899999999999999999999988643111 233444 567899999866554
No 61
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=87.96 E-value=1.1 Score=37.39 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=32.0
Q ss_pred CCCCCCCEEEEEEecCCCCCCeEEEEe-CCeeEEEcCCCeeecCC
Q psy7685 86 LSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLYPR 129 (137)
Q Consensus 86 Ls~~~Gd~i~vl~~~~~~~~gWw~g~~-~g~~G~~P~~yv~~~~~ 129 (137)
-++..|+.|.|+... ..||++.+. +|+.|||-..||..-+.
T Consensus 103 gsl~~G~~V~Vl~~~---~ngW~kI~~~~GktGwV~~~YLs~~~~ 144 (481)
T PRK13914 103 TSIKGGTKVTVETTE---SNGWHKITYNDGKTGFVNGKYLTDKVT 144 (481)
T ss_pred eeecCCCEEEEeecc---cCCeEEEEcCCCCEEEEecccccCCCc
Confidence 367899999997532 346999996 59999999999886543
No 62
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=85.17 E-value=1.6 Score=32.35 Aligned_cols=40 Identities=23% Similarity=0.389 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecC
Q psy7685 87 SFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP 128 (137)
Q Consensus 87 s~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~ 128 (137)
++++|+.++|+.... ..||...+ ..|+.|||+..++..-+
T Consensus 49 ~i~~Ge~vtvl~~~~--~~~~~qI~~~~g~t~wi~~~~lt~e~ 89 (205)
T COG3103 49 SIKAGEKVTVLGTDG--NTGYYQIRDSSGRTGWILSKNLTSEP 89 (205)
T ss_pred EecCCcEEEEEEEcC--cccEEEEEecCCceEEEechhhcccc
Confidence 678999999998854 34699999 78999999988876654
No 63
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=83.26 E-value=0.68 Score=26.14 Aligned_cols=34 Identities=18% Similarity=-0.062 Sum_probs=23.2
Q ss_pred hhhhhhcCCCchhhhhh-cccceecccccCChhhhh
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAA 40 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~ 40 (137)
..|.|+..|++++++.| +.|.++... ..+..|+.
T Consensus 4 ~lh~A~~~g~~~~~~~Ll~~~~din~~-d~~g~t~l 38 (54)
T PF13637_consen 4 PLHWAARSGNLEIVKLLLEHGADINAQ-DEDGRTPL 38 (54)
T ss_dssp HHHHHHHTT-HHHHHHHHHTTSGTT-B--TTS--HH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCCCHH
Confidence 36899999999999999 899987666 33344443
No 64
>KOG0505|consensus
Probab=82.50 E-value=0.5 Score=39.50 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=31.6
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCChhhhhhhhcccc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVKCEEDE 47 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~~~~~ 47 (137)
-|.||+|+++.+++.| .+|+++.+. .+|...+.+.|+...
T Consensus 110 lhaaascg~~~i~~~li~~gA~~~av-Nsdg~~P~dl~e~ea 150 (527)
T KOG0505|consen 110 LHAAASCGYLNIVEYLIQHGANLLAV-NSDGNMPYDLAEDEA 150 (527)
T ss_pred chhhcccccHHHHHHHHHhhhhhhhc-cCCCCCccccccCcc
Confidence 3999999999999999 999988554 455677777776653
No 65
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=79.27 E-value=1.1 Score=20.17 Aligned_cols=23 Identities=17% Similarity=-0.128 Sum_probs=19.3
Q ss_pred hhhhhhcCCCchhhhhh-ccccee
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCI 28 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~ 28 (137)
-.|.|+..++.++++.| +.|..+
T Consensus 5 ~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 5 PLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC
Confidence 36888899999999999 887755
No 66
>KOG4412|consensus
Probab=79.10 E-value=1.1 Score=33.10 Aligned_cols=28 Identities=18% Similarity=-0.133 Sum_probs=24.9
Q ss_pred hhhhhcCCCchhhhhh--cccceecccccC
Q psy7685 7 QKIHFTCTTLAVCSLS--FVLYCIFATTHS 34 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l--~~g~~~~~~~~~ 34 (137)
.|.|||.+..++|+.| ++|+++.+.|..
T Consensus 76 lhia~s~g~~evVk~Ll~r~~advna~tn~ 105 (226)
T KOG4412|consen 76 LHIAASNGNDEVVKELLNRSGADVNATTNG 105 (226)
T ss_pred hhhhhhcCcHHHHHHHhcCCCCCcceecCC
Confidence 6999999999999999 789999888765
No 67
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=75.53 E-value=1.7 Score=26.73 Aligned_cols=27 Identities=11% Similarity=-0.156 Sum_probs=22.0
Q ss_pred hhhhhhcCCCchhhhhh-cccceecccc
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATT 32 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~ 32 (137)
-.|.|+..|++++++.| +.|+++....
T Consensus 29 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~ 56 (89)
T PF12796_consen 29 ALHYAAENGNLEIVKLLLENGADINSQD 56 (89)
T ss_dssp HHHHHHHTTTHHHHHHHHHTTTCTT-BS
T ss_pred HHHHHHHcCCHHHHHHHHHhcccccccC
Confidence 46889999999999999 9998885554
No 68
>PHA02791 ankyrin-like protein; Provisional
Probab=75.35 E-value=1.5 Score=34.05 Aligned_cols=27 Identities=11% Similarity=0.021 Sum_probs=21.7
Q ss_pred hhhhhcCCCchhhhhh-cccceeccccc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTH 33 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~ 33 (137)
-|+||..|+++++++| ..|+++.+...
T Consensus 198 L~~Aa~~~~~e~v~lLl~~Ga~in~~~~ 225 (284)
T PHA02791 198 IKLAIDNKDLEMLQALFKYDINIYSVNL 225 (284)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence 4888888888888888 88888866644
No 69
>KOG3580|consensus
Probab=74.86 E-value=5.8 Score=34.33 Aligned_cols=53 Identities=17% Similarity=0.384 Sum_probs=39.2
Q ss_pred ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEE-EeC-----CeeEEEcCCC
Q psy7685 71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS-KLN-----NKEGYVPRNL 123 (137)
Q Consensus 71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g-~~~-----g~~G~~P~~y 123 (137)
+.+.-|.|+...+..|.|.+|+++.++.-.-++..|-|.+ +.. -.+|++|...
T Consensus 506 yIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNks 564 (1027)
T KOG3580|consen 506 YIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNKS 564 (1027)
T ss_pred EEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCcc
Confidence 3556778888999999999999999998766666665554 422 2479998643
No 70
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=70.06 E-value=13 Score=21.59 Aligned_cols=33 Identities=15% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcC
Q psy7685 87 SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 121 (137)
Q Consensus 87 s~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~ 121 (137)
.+..|+-|.|+.... ++.|..++...-.|||++
T Consensus 22 ~l~~gtPv~i~H~S~--D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 22 ALHPGTPVYILHTSR--DGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EE-TT-EEEEEEE-T--TSSEEEEE-SS-EEEEEG
T ss_pred ccCCCCCEEEEEECC--CCCEEEEecCCeeEeeeC
Confidence 456788899988865 346999998888999863
No 71
>KOG3676|consensus
Probab=68.55 E-value=2.2 Score=37.51 Aligned_cols=34 Identities=9% Similarity=-0.201 Sum_probs=26.7
Q ss_pred hhhcCCCchhhhhh-cccceecccccCChhhhhhhh
Q psy7685 9 IHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVKC 43 (137)
Q Consensus 9 ~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~ 43 (137)
-|||+|..+++++| ++||++.++-.- .+|....|
T Consensus 246 fAAC~nq~eivrlLl~~gAd~~aqDS~-GNTVLH~l 280 (782)
T KOG3676|consen 246 FAACTNQPEIVRLLLAHGADPNAQDSN-GNTVLHML 280 (782)
T ss_pred HHHHcCCHHHHHHHHhcCCCCCccccC-CChHHHHH
Confidence 49999999999999 999999777543 45555444
No 72
>PHA02795 ankyrin-like protein; Provisional
Probab=63.34 E-value=3.5 Score=34.10 Aligned_cols=25 Identities=4% Similarity=0.021 Sum_probs=22.5
Q ss_pred hhhhhhc--CCCchhhhhh-cccceecc
Q psy7685 6 IQKIHFT--CTTLAVCSLS-FVLYCIFA 30 (137)
Q Consensus 6 ~~~~~a~--~~~~~~~~~l-~~g~~~~~ 30 (137)
.-||++. .|+++++++| .+||++..
T Consensus 119 ~L~~~~~n~~n~~eiV~~LI~~GADIn~ 146 (437)
T PHA02795 119 LLLYYLSNAYVEIDIVDFMVDHGAVIYK 146 (437)
T ss_pred HHHHHHHhcCCCHHHHHHHHHCCCCCCC
Confidence 3589998 9999999999 99999976
No 73
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=63.07 E-value=14 Score=21.24 Aligned_cols=22 Identities=36% Similarity=0.802 Sum_probs=17.3
Q ss_pred CCCCCCEEEEEEecCCCCCCeEEEE
Q psy7685 87 SFKTGECIIVLRKGDENEREWWWSK 111 (137)
Q Consensus 87 s~~~Gd~i~vl~~~~~~~~gWw~g~ 111 (137)
.|++|+.+.+.... +.+||.+.
T Consensus 2 ~~~~G~~Ve~~~~~---~~~W~~a~ 23 (61)
T smart00743 2 DFKKGDRVEVFSKE---EDSWWEAV 23 (61)
T ss_pred CcCCCCEEEEEECC---CCEEEEEE
Confidence 57899999988754 34599998
No 74
>KOG4384|consensus
Probab=61.73 E-value=5.5 Score=31.90 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=44.9
Q ss_pred cceEEeeccC--CCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685 70 GAVYALYDYE--ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130 (137)
Q Consensus 70 ~~~~al~dy~--~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~ 130 (137)
+.+.+.-+|. +...++|.+++|++|.++.+.. -|-|.+-.+++.|-|+.-||..+...
T Consensus 137 ~~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~---~~~~~g~~~~kv~~f~~~~v~~~s~e 196 (361)
T KOG4384|consen 137 GRARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPP---MGTWLGLLNNKVGSFKFIYVDVISEE 196 (361)
T ss_pred ccccccccCCCCcccccchhhcccchhhccccCc---cccccccccCcccccccceecccccc
Confidence 3445555555 4577889999999999998753 34888889999999999999888643
No 75
>KOG0512|consensus
Probab=61.52 E-value=4.2 Score=29.87 Aligned_cols=29 Identities=10% Similarity=-0.190 Sum_probs=25.7
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCC
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSD 35 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d 35 (137)
-|-||-.|+++|+..| ..||+..+.|...
T Consensus 101 LHRAaYn~h~div~~ll~~gAn~~a~T~~G 130 (228)
T KOG0512|consen 101 LHRAAYNGHLDIVHELLLSGANKEAKTNEG 130 (228)
T ss_pred HHHHHhcCchHHHHHHHHccCCcccccccC
Confidence 5889999999999999 9999999888653
No 76
>KOG0509|consensus
Probab=61.32 E-value=3.8 Score=35.07 Aligned_cols=28 Identities=7% Similarity=-0.224 Sum_probs=22.7
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccC
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHS 34 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~ 34 (137)
-|-||..|++.+|.+| ++||++.+....
T Consensus 116 LHWAar~G~~~vv~lLlqhGAdpt~~D~~ 144 (600)
T KOG0509|consen 116 LHWAARNGHISVVDLLLQHGADPTLKDKQ 144 (600)
T ss_pred chHHHHcCcHHHHHHHHHcCCCCceecCC
Confidence 5888999999999999 999988766543
No 77
>KOG0509|consensus
Probab=59.63 E-value=4.4 Score=34.71 Aligned_cols=27 Identities=11% Similarity=-0.219 Sum_probs=24.1
Q ss_pred hhhhhcCCCchhhhhh-cccceeccccc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTH 33 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~ 33 (137)
-|-||.+|.+++++.| ++||++.+..-
T Consensus 82 LHWAAiNNrl~v~r~li~~gadvn~~gG 109 (600)
T KOG0509|consen 82 LHWAAINNRLDVARYLISHGADVNAIGG 109 (600)
T ss_pred eeHHHHcCcHHHHHHHHHcCCCccccCC
Confidence 4889999999999999 99999987753
No 78
>PHA02884 ankyrin repeat protein; Provisional
Probab=59.54 E-value=5.3 Score=31.30 Aligned_cols=35 Identities=9% Similarity=-0.118 Sum_probs=23.0
Q ss_pred hhhhhhcCCCchhhhhh-cccceecccccCChhhhh
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAA 40 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~ 40 (137)
..|.||..++++++++| ++|+++.+.......|+.
T Consensus 73 pLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpL 108 (300)
T PHA02884 73 PLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPL 108 (300)
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHH
Confidence 35778888888888888 888877654333333443
No 79
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=57.55 E-value=16 Score=22.78 Aligned_cols=26 Identities=31% Similarity=0.864 Sum_probs=16.9
Q ss_pred CCCCCCCEEEEEEec---CCCCCCeEEEE
Q psy7685 86 LSFKTGECIIVLRKG---DENEREWWWSK 111 (137)
Q Consensus 86 Ls~~~Gd~i~vl~~~---~~~~~gWw~g~ 111 (137)
|.++.||.+.|-... ...+..||.|.
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~ 32 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQ 32 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEE
Confidence 678899998665432 01124599997
No 80
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=56.16 E-value=16 Score=21.88 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=13.8
Q ss_pred CCCCCEEEEEEecCCCCCCeEEEE
Q psy7685 88 FKTGECIIVLRKGDENEREWWWSK 111 (137)
Q Consensus 88 ~~~Gd~i~vl~~~~~~~~gWw~g~ 111 (137)
|++|+.+.|....+...+.|+.+.
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~ 24 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPAT 24 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEE
Confidence 689999999887554334488877
No 81
>KOG0511|consensus
Probab=56.10 E-value=4.8 Score=32.87 Aligned_cols=21 Identities=14% Similarity=-0.103 Sum_probs=18.3
Q ss_pred hhhhcCCCchhhhhh-ccccee
Q psy7685 8 KIHFTCTTLAVCSLS-FVLYCI 28 (137)
Q Consensus 8 ~~~a~~~~~~~~~~l-~~g~~~ 28 (137)
-.|..|||.++|++| |+||--
T Consensus 74 ~lAsLcGHe~vvklLLenGAiC 95 (516)
T KOG0511|consen 74 YLASLCGHEDVVKLLLENGAIC 95 (516)
T ss_pred HHHHHcCcHHHHHHHHHcCCcc
Confidence 468999999999999 999843
No 82
>KOG0508|consensus
Probab=55.94 E-value=6.5 Score=33.04 Aligned_cols=40 Identities=15% Similarity=0.044 Sum_probs=30.6
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCChhhhhhhhccc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVKCEED 46 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~~~~ 46 (137)
+-||+-.|++++|++| ++|+++.-+|......-...|=+.
T Consensus 88 LWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG 128 (615)
T KOG0508|consen 88 LWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDG 128 (615)
T ss_pred hhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcc
Confidence 3478888999999999 999999888877654555555443
No 83
>PHA02946 ankyin-like protein; Provisional
Probab=55.09 E-value=6.9 Score=32.14 Aligned_cols=33 Identities=12% Similarity=-0.073 Sum_probs=25.9
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCChhhhh
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAA 40 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~ 40 (137)
.|.||..|+.+++++| ++|+++.+.... ..|+.
T Consensus 76 Lh~Aa~~g~~eiv~lLL~~GAdin~~d~~-g~TpL 109 (446)
T PHA02946 76 LHIASKINNNRIVAMLLTHGADPNACDKQ-HKTPL 109 (446)
T ss_pred HHHHHHcCCHHHHHHHHHCcCCCCCCCCC-CCCHH
Confidence 5999999999999999 999998765433 33444
No 84
>PHA02791 ankyrin-like protein; Provisional
Probab=54.69 E-value=6.1 Score=30.61 Aligned_cols=27 Identities=7% Similarity=-0.062 Sum_probs=22.1
Q ss_pred hhhhhhcCCCchhhhhh-cccceecccc
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATT 32 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~ 32 (137)
-.|.||..|+.+++++| ++|+++....
T Consensus 163 pLh~Aa~~g~~eiv~lLL~~gAd~n~~d 190 (284)
T PHA02791 163 CIHITIKNGHVDMMILLLDYMTSTNTNN 190 (284)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence 46889999999999999 8898876543
No 85
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=50.71 E-value=7.3 Score=33.92 Aligned_cols=25 Identities=8% Similarity=-0.118 Sum_probs=22.8
Q ss_pred hhhhhcCCCchhhhhh-cccceeccc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFAT 31 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~ 31 (137)
-|.||.+|+.+++++| +.|+++.+.
T Consensus 132 LhlAa~~~~~eiVklLL~~GAdv~~~ 157 (743)
T TIGR00870 132 LHLAAHRQNYEIVKLLLERGASVPAR 157 (743)
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCCcC
Confidence 5999999999999999 999999754
No 86
>PHA02798 ankyrin-like protein; Provisional
Probab=48.82 E-value=8.6 Score=31.69 Aligned_cols=36 Identities=8% Similarity=-0.141 Sum_probs=28.5
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCChhhhhhhh
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVKC 43 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~ 43 (137)
-|.||..|+.++++.| +.|+++...+.. ..|+...+
T Consensus 262 L~~A~~~~~~~~v~~LL~~GAdin~~d~~-G~TpL~~A 298 (489)
T PHA02798 262 LYYSVSHNNRKIFEYLLQLGGDINIITEL-GNTCLFTA 298 (489)
T ss_pred HHHHHHcCcHHHHHHHHHcCCcccccCCC-CCcHHHHH
Confidence 5899999999999999 999999876643 44555443
No 87
>PHA02876 ankyrin repeat protein; Provisional
Probab=47.33 E-value=11 Score=32.46 Aligned_cols=27 Identities=4% Similarity=-0.272 Sum_probs=23.5
Q ss_pred hhhhhhcCCCchhhhhh-cccceecccc
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATT 32 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~ 32 (137)
-.|+||..|+.++|++| +.|+++....
T Consensus 181 pLh~Aa~~G~~~iv~~LL~~Gad~n~~~ 208 (682)
T PHA02876 181 PIHYAAERGNAKMVNLLLSYGADVNIIA 208 (682)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCcCccC
Confidence 36999999999999999 9999886554
No 88
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=46.85 E-value=26 Score=29.96 Aligned_cols=40 Identities=13% Similarity=0.364 Sum_probs=29.3
Q ss_pred CCCEEEEEEecCC--CCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685 90 TGECIIVLRKGDE--NEREWWWSK-LNNKEGYVPRNLLGLYPR 129 (137)
Q Consensus 90 ~Gd~i~vl~~~~~--~~~gWw~g~-~~g~~G~~P~~yv~~~~~ 129 (137)
-|++++|.++..+ .+-+|.... .+|..||+...|++.++.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (549)
T PRK13545 374 FGDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPFKS 416 (549)
T ss_pred cCceEEEcccccccccCcceEEEEecCCccceeeeeeeeeccc
Confidence 3788877654321 123599888 889999999999998753
No 89
>PHA02743 Viral ankyrin protein; Provisional
Probab=44.91 E-value=14 Score=25.80 Aligned_cols=25 Identities=12% Similarity=-0.183 Sum_probs=14.0
Q ss_pred hhhhhcCCCchh---hhhh-cccceeccc
Q psy7685 7 QKIHFTCTTLAV---CSLS-FVLYCIFAT 31 (137)
Q Consensus 7 ~~~~a~~~~~~~---~~~l-~~g~~~~~~ 31 (137)
.|+||..|..+. ++.| +.|+++...
T Consensus 61 Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~ 89 (166)
T PHA02743 61 THMVAWYDRANAVMKIELLVNMGADINAR 89 (166)
T ss_pred HHHHHHhCccCHHHHHHHHHHcCCCCCCC
Confidence 466666655443 4555 666665544
No 90
>KOG0783|consensus
Probab=44.07 E-value=10 Score=34.10 Aligned_cols=36 Identities=11% Similarity=-0.055 Sum_probs=29.6
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCChhhhhhh
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVK 42 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~ 42 (137)
-|.|+|||.-.+++-| ++|++++.......-|+...
T Consensus 56 lH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHR 92 (1267)
T KOG0783|consen 56 LHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHR 92 (1267)
T ss_pred eeeeeccchhHHHHHHHhcCceeeeccccccchHhhH
Confidence 4899999999999999 99999998876655555443
No 91
>PHA02730 ankyrin-like protein; Provisional
Probab=44.07 E-value=11 Score=32.91 Aligned_cols=34 Identities=6% Similarity=-0.116 Sum_probs=26.0
Q ss_pred hhhhhcCC---Cchhhhhh-cccceecccccCChhhhhh
Q psy7685 7 QKIHFTCT---TLAVCSLS-FVLYCIFATTHSDHETAAV 41 (137)
Q Consensus 7 ~~~~a~~~---~~~~~~~l-~~g~~~~~~~~~d~~~~~~ 41 (137)
-|+|+..| +.+++++| ++||++.+... +..|+..
T Consensus 45 Lh~A~~~~~~~~~eivklLLs~GAdin~kD~-~G~TPLh 82 (672)
T PHA02730 45 LHCYVSNKCDTDIKIVRLLLSRGVERLCRNN-EGLTPLG 82 (672)
T ss_pred HHHHHHcCCcCcHHHHHHHHhCCCCCcccCC-CCCChHH
Confidence 58999887 49999999 99999987643 3444443
No 92
>KOG4412|consensus
Probab=43.96 E-value=11 Score=27.80 Aligned_cols=27 Identities=11% Similarity=-0.161 Sum_probs=21.8
Q ss_pred hhhhhcCCCchhhhhh-cccceeccccc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTH 33 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~ 33 (137)
-|.||+=|-+++..+| ++|+.+...-.
T Consensus 110 LHyAagK~r~eIaqlLle~ga~i~~kD~ 137 (226)
T KOG4412|consen 110 LHYAAGKGRLEIAQLLLEKGALIRIKDK 137 (226)
T ss_pred ehhhhcCChhhHHHHHHhcCCCCccccc
Confidence 4889999999999999 99987765543
No 93
>PHA02878 ankyrin repeat protein; Provisional
Probab=43.23 E-value=14 Score=30.33 Aligned_cols=34 Identities=12% Similarity=-0.092 Sum_probs=26.3
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCChhhhhh
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAV 41 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~ 41 (137)
.|.||.++++++|+.| +.|+++..... +..|+..
T Consensus 41 Lh~A~~~g~~e~vk~Ll~~gadvn~~d~-~g~TpLh 75 (477)
T PHA02878 41 LHQAVEARNLDVVKSLLTRGHNVNQPDH-RDLTPLH 75 (477)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHH
Confidence 6999999999999999 99998876543 2334443
No 94
>PHA02795 ankyrin-like protein; Provisional
Probab=42.04 E-value=13 Score=30.82 Aligned_cols=36 Identities=8% Similarity=-0.207 Sum_probs=27.4
Q ss_pred hhhhhhcCCCchhhhhh-cccceecccccCChhhhhhh
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVK 42 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~ 42 (137)
-.|.||..|+.++++.| ++|+++.+.... ..|+...
T Consensus 224 pLh~Aa~~g~~eiVelLL~~GAdIN~~d~~-G~TpLh~ 260 (437)
T PHA02795 224 LLYRAIYAGYIDLVSWLLENGANVNAVMSN-GYTCLDV 260 (437)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCC-CCCHHHH
Confidence 35899999999999999 999998776543 4444443
No 95
>KOG0515|consensus
Probab=41.24 E-value=12 Score=31.94 Aligned_cols=34 Identities=9% Similarity=-0.121 Sum_probs=27.1
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCChhhhhh
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAV 41 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~ 41 (137)
.|-|-|.+|.+||++| +.|+++.+... |.=|+..
T Consensus 587 LHNAiCaghyeIVkFLi~~ganVNa~DS-dGWTPLH 621 (752)
T KOG0515|consen 587 LHNAICAGHYEIVKFLIEFGANVNAADS-DGWTPLH 621 (752)
T ss_pred HhhhhhcchhHHHHHHHhcCCcccCccC-CCCchhh
Confidence 5889999999999999 99999987643 4445544
No 96
>KOG0507|consensus
Probab=40.44 E-value=13 Score=32.90 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=25.3
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCChhhhhhhhcc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVKCEE 45 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~~~ 45 (137)
-|.||.|+.+++|+.| +.|.+...+.. ...|..+...+
T Consensus 225 lheaalcgk~evvr~ll~~gin~h~~n~-~~qtaldil~d 263 (854)
T KOG0507|consen 225 LHEAALCGKAEVVRFLLEIGINTHIKNQ-HGQTALDIIID 263 (854)
T ss_pred hhhHhhcCcchhhhHHHhhccccccccc-cchHHHHHHHh
Confidence 4888888888888888 88887765543 23444444333
No 97
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=36.59 E-value=20 Score=31.85 Aligned_cols=25 Identities=4% Similarity=-0.291 Sum_probs=15.5
Q ss_pred hhhhhcCCCchhhhhh-cccceeccc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFAT 31 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~ 31 (137)
.|.||..|++++++.| ++|+++.+.
T Consensus 626 L~~Aa~~g~~~~v~~Ll~~Gadin~~ 651 (823)
T PLN03192 626 LCTAAKRNDLTAMKELLKQGLNVDSE 651 (823)
T ss_pred HHHHHHhCCHHHHHHHHHCCCCCCCC
Confidence 4566666666666666 666666544
No 98
>KOG4214|consensus
Probab=36.49 E-value=15 Score=24.27 Aligned_cols=27 Identities=7% Similarity=-0.113 Sum_probs=23.2
Q ss_pred chhhhhhcCCCchhhhhh-cccceeccc
Q psy7685 5 HIQKIHFTCTTLAVCSLS-FVLYCIFAT 31 (137)
Q Consensus 5 ~~~~~~a~~~~~~~~~~l-~~g~~~~~~ 31 (137)
+-.|.||-||-+++...| .-|++|...
T Consensus 36 ~plhyAAD~GQl~ilefli~iGA~i~~k 63 (117)
T KOG4214|consen 36 TPLHYAADYGQLSILEFLISIGANIQDK 63 (117)
T ss_pred ccchHhhhcchHHHHHHHHHhccccCCc
Confidence 446999999999999999 999988544
No 99
>PHA02875 ankyrin repeat protein; Provisional
Probab=36.25 E-value=22 Score=28.33 Aligned_cols=25 Identities=16% Similarity=-0.003 Sum_probs=14.5
Q ss_pred hhhhhcCCCchhhhhh-cccceeccc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFAT 31 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~ 31 (137)
.|.|+..++.++++.| +.|+++...
T Consensus 172 L~~A~~~g~~eiv~~Ll~~ga~~n~~ 197 (413)
T PHA02875 172 LIIAMAKGDIAICKMLLDSGANIDYF 197 (413)
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcC
Confidence 3556666666666666 666655443
No 100
>KOG0512|consensus
Probab=36.22 E-value=17 Score=26.74 Aligned_cols=29 Identities=10% Similarity=-0.167 Sum_probs=25.8
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCC
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSD 35 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d 35 (137)
.|.|..-|+.+++.+| ++|+++.|.+...
T Consensus 134 LhSAckWnN~~va~~LLqhgaDVnA~t~g~ 163 (228)
T KOG0512|consen 134 LHSACKWNNFEVAGRLLQHGADVNAQTKGL 163 (228)
T ss_pred hhhhhcccchhHHHHHHhccCccccccccc
Confidence 4888889999999999 9999999988764
No 101
>PHA02989 ankyrin repeat protein; Provisional
Probab=35.15 E-value=17 Score=29.91 Aligned_cols=27 Identities=7% Similarity=-0.053 Sum_probs=23.9
Q ss_pred hhhhhcCCCchhhhhh-cccceeccccc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTH 33 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~ 33 (137)
-|.||..++.++++.| +.|+++.+...
T Consensus 260 L~~Aa~~~~~~~v~~LL~~Gadin~~d~ 287 (494)
T PHA02989 260 LLISAKVDNYEAFNYLLKLGDDIYNVSK 287 (494)
T ss_pred HHHHHHhcCHHHHHHHHHcCCCccccCC
Confidence 5889999999999999 99999987754
No 102
>PHA02741 hypothetical protein; Provisional
Probab=33.41 E-value=25 Score=24.50 Aligned_cols=35 Identities=14% Similarity=-0.110 Sum_probs=24.4
Q ss_pred hhhhhhcCCC----chhhhhh-cccceecccccCChhhhh
Q psy7685 6 IQKIHFTCTT----LAVCSLS-FVLYCIFATTHSDHETAA 40 (137)
Q Consensus 6 ~~~~~a~~~~----~~~~~~l-~~g~~~~~~~~~d~~~~~ 40 (137)
..|.|+..++ .++++.| +.|+++......+..|+.
T Consensus 63 ~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpL 102 (169)
T PHA02741 63 CIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTAL 102 (169)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHH
Confidence 3688998888 5788888 889988765433334443
No 103
>KOG0507|consensus
Probab=32.64 E-value=20 Score=31.83 Aligned_cols=29 Identities=10% Similarity=-0.122 Sum_probs=26.3
Q ss_pred hhhhhhcCCCchhhhhh-cccceecccccC
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATTHS 34 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~~~ 34 (137)
-.|.||..|+..+++.| +.|.++..+|..
T Consensus 192 plHlaakngh~~~~~~ll~ag~din~~t~~ 221 (854)
T KOG0507|consen 192 PLHLAAKNGHVECMQALLEAGFDINYTTED 221 (854)
T ss_pred CcchhhhcchHHHHHHHHhcCCCccccccc
Confidence 47999999999999999 999999888765
No 104
>KOG2384|consensus
Probab=31.79 E-value=11 Score=28.07 Aligned_cols=39 Identities=13% Similarity=-0.140 Sum_probs=27.8
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCChhhhhhhhcc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVKCEE 45 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~~~ 45 (137)
-+|||.-+.-++|+.| +.|+..-..+.....+.+...+.
T Consensus 16 lmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek 55 (223)
T KOG2384|consen 16 LMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEK 55 (223)
T ss_pred HHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHh
Confidence 4899999999999999 99966555555444444444443
No 105
>PHA02736 Viral ankyrin protein; Provisional
Probab=31.54 E-value=22 Score=24.13 Aligned_cols=35 Identities=11% Similarity=-0.259 Sum_probs=22.7
Q ss_pred hhhhhcCCCch---hhhhh-cccceecccccCChhhhhh
Q psy7685 7 QKIHFTCTTLA---VCSLS-FVLYCIFATTHSDHETAAV 41 (137)
Q Consensus 7 ~~~~a~~~~~~---~~~~l-~~g~~~~~~~~~d~~~~~~ 41 (137)
.|.|+..+++. ++++| +.|+++......+..|+..
T Consensus 59 Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh 97 (154)
T PHA02736 59 VHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLH 97 (154)
T ss_pred EEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHH
Confidence 47788877764 56777 8888887655434444443
No 106
>PHA03095 ankyrin-like protein; Provisional
Probab=30.49 E-value=27 Score=28.16 Aligned_cols=34 Identities=12% Similarity=-0.051 Sum_probs=26.4
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCChhhhhh
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAV 41 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~ 41 (137)
.|.|+..|+..+++.| +.|+++...... ..|+..
T Consensus 261 Lh~A~~~~~~~~v~~LL~~gad~n~~~~~-g~tpl~ 295 (471)
T PHA03095 261 LHYAAVFNNPRACRRLIALGADINAVSSD-GNTPLS 295 (471)
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCCHHH
Confidence 5899999999999999 999998766543 344443
No 107
>PHA02884 ankyrin repeat protein; Provisional
Probab=30.29 E-value=26 Score=27.47 Aligned_cols=36 Identities=17% Similarity=-0.127 Sum_probs=28.0
Q ss_pred hhhhhhcCCCchhhhhh-cccceecccccCChhhhhhh
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVK 42 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~ 42 (137)
-.|.||..++.+++++| ..|+++..... +..|+...
T Consensus 107 pLh~Aa~~~~~eivklLL~~GAdin~kd~-~G~TpL~~ 143 (300)
T PHA02884 107 PLYISVLHGCLKCLEILLSYGADINIQTN-DMVTPIEL 143 (300)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHH
Confidence 46999999999999999 99999987543 34455443
No 108
>PHA02878 ankyrin repeat protein; Provisional
Probab=29.85 E-value=26 Score=28.65 Aligned_cols=25 Identities=4% Similarity=-0.241 Sum_probs=20.8
Q ss_pred hhhhhcCCCchhhhhh-cccceeccc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFAT 31 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~ 31 (137)
.|.||..++.+++++| +.|+++...
T Consensus 172 Lh~A~~~~~~~iv~~Ll~~gad~n~~ 197 (477)
T PHA02878 172 LHYATENKDQRLTELLLSYGANVNIP 197 (477)
T ss_pred HHHHHhCCCHHHHHHHHHCCCCCCCc
Confidence 5889999999999998 888887654
No 109
>KOG4177|consensus
Probab=29.42 E-value=32 Score=31.97 Aligned_cols=35 Identities=6% Similarity=-0.196 Sum_probs=22.8
Q ss_pred hhhhhhcCCCchhhhhh-cccceecccccCChhhhhh
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAV 41 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~ 41 (137)
.-|-|+-.|++.+|+.| ++|+++.+++ ....|+..
T Consensus 543 pLh~A~~~g~v~~VkfLLe~gAdv~ak~-~~G~TPLH 578 (1143)
T KOG4177|consen 543 PLHVAVHYGNVDLVKFLLEHGADVNAKD-KLGYTPLH 578 (1143)
T ss_pred hHHHHHhcCCchHHHHhhhCCccccccC-CCCCChhh
Confidence 45667777777777777 7777777776 44444443
No 110
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=29.20 E-value=26 Score=31.09 Aligned_cols=28 Identities=4% Similarity=-0.236 Sum_probs=23.6
Q ss_pred hhhhhhcCCCchhhhhh-cccceeccccc
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATTH 33 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~~ 33 (137)
..|+||..|+.+++++| ++|+++.....
T Consensus 561 pLh~Aa~~g~~~~v~~Ll~~gadin~~d~ 589 (823)
T PLN03192 561 PLHIAASKGYEDCVLVLLKHACNVHIRDA 589 (823)
T ss_pred HHHHHHHcChHHHHHHHHhcCCCCCCcCC
Confidence 46999999999999999 99998876543
No 111
>PHA02875 ankyrin repeat protein; Provisional
Probab=28.75 E-value=28 Score=27.74 Aligned_cols=27 Identities=7% Similarity=-0.234 Sum_probs=21.7
Q ss_pred hhhhhhcCCCchhhhhh-cccceecccc
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATT 32 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~ 32 (137)
..|.|+..++.++++.| +.|+++....
T Consensus 105 pL~~A~~~~~~~iv~~Ll~~gad~~~~~ 132 (413)
T PHA02875 105 PLHLATILKKLDIMKLLIARGADPDIPN 132 (413)
T ss_pred HHHHHHHhCCHHHHHHHHhCCCCCCCCC
Confidence 35888999999999999 8888876543
No 112
>KOG0505|consensus
Probab=27.94 E-value=17 Score=30.66 Aligned_cols=40 Identities=20% Similarity=0.032 Sum_probs=33.1
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCChhhhhhhhcccc
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVKCEEDE 47 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~~~~~ 47 (137)
-|.||.-+..+++++| ++|+.+.+.+..+ +++.+.|++..
T Consensus 235 lHAAA~Wg~~~~~elL~~~ga~~d~~t~~g-~~p~dv~dee~ 275 (527)
T KOG0505|consen 235 LHAAAHWGQEDACELLVEHGADMDAKTKMG-ETPLDVADEEE 275 (527)
T ss_pred ccHHHHhhhHhHHHHHHHhhcccchhhhcC-CCCccchhhhh
Confidence 4999999999999999 9999998888774 56777776643
No 113
>PHA02874 ankyrin repeat protein; Provisional
Probab=27.22 E-value=32 Score=27.76 Aligned_cols=26 Identities=8% Similarity=-0.302 Sum_probs=21.7
Q ss_pred hhhhhhcCCCchhhhhh-cccceeccc
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFAT 31 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~ 31 (137)
..|.|+..|++++++.| +.|+++...
T Consensus 38 pL~~A~~~g~~~iv~~Ll~~Ga~~n~~ 64 (434)
T PHA02874 38 PLIDAIRSGDAKIVELFIKHGADINHI 64 (434)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence 46899999999999999 999887543
No 114
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.88 E-value=33 Score=27.77 Aligned_cols=25 Identities=16% Similarity=-0.027 Sum_probs=14.1
Q ss_pred hhhhhcCC--Cchhhhhh-cccceeccc
Q psy7685 7 QKIHFTCT--TLAVCSLS-FVLYCIFAT 31 (137)
Q Consensus 7 ~~~~a~~~--~~~~~~~l-~~g~~~~~~ 31 (137)
.|.|+.++ +.++++.| +.|+++...
T Consensus 145 L~~A~~~~~~~~~iv~~Ll~~g~din~~ 172 (480)
T PHA03100 145 LHLYLESNKIDLKILKLLIDKGVDINAK 172 (480)
T ss_pred HHHHHHcCCChHHHHHHHHHCCCCcccc
Confidence 45555555 56666666 556555433
No 115
>PHA02859 ankyrin repeat protein; Provisional
Probab=26.85 E-value=38 Score=24.59 Aligned_cols=35 Identities=6% Similarity=-0.173 Sum_probs=22.7
Q ss_pred hhhhhc--CCCchhhhhh-cccceecccccCChhhhhh
Q psy7685 7 QKIHFT--CTTLAVCSLS-FVLYCIFATTHSDHETAAV 41 (137)
Q Consensus 7 ~~~~a~--~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~ 41 (137)
.|.|+. .++++++++| ++|+++.........|+..
T Consensus 55 Lh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh 92 (209)
T PHA02859 55 IFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALH 92 (209)
T ss_pred HHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHH
Confidence 355654 3478999999 9999887664333444444
No 116
>PHA03095 ankyrin-like protein; Provisional
Probab=26.42 E-value=37 Score=27.35 Aligned_cols=27 Identities=19% Similarity=-0.009 Sum_probs=21.1
Q ss_pred hhhhhcCC-Cchhhhhh-cccceeccccc
Q psy7685 7 QKIHFTCT-TLAVCSLS-FVLYCIFATTH 33 (137)
Q Consensus 7 ~~~~a~~~-~~~~~~~l-~~g~~~~~~~~ 33 (137)
.|+|+..+ ..+++++| +.|+++.....
T Consensus 87 Lh~A~~~~~~~~iv~lLl~~ga~in~~~~ 115 (471)
T PHA03095 87 LHLYLYNATTLDVIKLLIKAGADVNAKDK 115 (471)
T ss_pred HHHHHHcCCcHHHHHHHHHcCCCCCCCCC
Confidence 58888888 58888888 88888765543
No 117
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.87 E-value=34 Score=27.68 Aligned_cols=34 Identities=3% Similarity=-0.263 Sum_probs=24.4
Q ss_pred hhhhhcCCCchhhhhh-cccceecccccCChhhhhh
Q psy7685 7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAV 41 (137)
Q Consensus 7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~ 41 (137)
.|.|+..++.++++.| +.|+++...... ..|+..
T Consensus 254 L~~A~~~~~~~iv~~Ll~~gad~n~~d~~-g~tpl~ 288 (480)
T PHA03100 254 LHYAVYNNNPEFVKYLLDLGANPNLVNKY-GDTPLH 288 (480)
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCC-CCcHHH
Confidence 5888888999999999 889877655433 334433
No 118
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=24.96 E-value=37 Score=29.51 Aligned_cols=28 Identities=7% Similarity=-0.230 Sum_probs=22.4
Q ss_pred hhhhhhcCCCchhhhhh-cccceeccccc
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATTH 33 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~~ 33 (137)
-.|.|+..|+.+++++| +.|+++.....
T Consensus 118 pLh~Aa~~g~~eiv~~LL~~Gadvn~~d~ 146 (664)
T PTZ00322 118 PLHIACANGHVQVVRVLLEFGADPTLLDK 146 (664)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Confidence 36889999999999999 88888765543
No 119
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=24.82 E-value=30 Score=30.14 Aligned_cols=35 Identities=9% Similarity=-0.167 Sum_probs=26.8
Q ss_pred hhhhhhcCCCchhhhhh-cccceecccccCChhhhhh
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAV 41 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~ 41 (137)
-.|.||..|+.+++++| ++|+++.++.. ...|+..
T Consensus 178 pL~~Aa~~~~~~iv~lLl~~gadin~~d~-~g~T~Lh 213 (743)
T TIGR00870 178 PLNAAACLGSPSIVALLSEDPADILTADS-LGNTLLH 213 (743)
T ss_pred HHHHHHHhCCHHHHHHHhcCCcchhhHhh-hhhHHHH
Confidence 46899999999999999 99998876543 2344443
No 120
>PHA02730 ankyrin-like protein; Provisional
Probab=23.65 E-value=47 Score=29.15 Aligned_cols=37 Identities=14% Similarity=-0.051 Sum_probs=29.3
Q ss_pred hhhhhhcCCCchhhhhh-cccceecccccCChhhhhhh
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVK 42 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~ 42 (137)
-.|.||.-++.+++++| .+|+++.+.......|+...
T Consensus 465 PLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~ 502 (672)
T PHA02730 465 LLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQK 502 (672)
T ss_pred HHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHH
Confidence 36899999999999999 99999988775444555543
No 121
>PHA02874 ankyrin repeat protein; Provisional
Probab=22.89 E-value=44 Score=26.95 Aligned_cols=26 Identities=4% Similarity=-0.219 Sum_probs=21.2
Q ss_pred hhhhhhcCCCchhhhhh-cccceeccc
Q psy7685 6 IQKIHFTCTTLAVCSLS-FVLYCIFAT 31 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~ 31 (137)
-.|.|+..|+.++++.| +.|+++...
T Consensus 127 ~Lh~A~~~~~~~~v~~Ll~~gad~n~~ 153 (434)
T PHA02874 127 FLHYAIKKGDLESIKMLFEYGADVNIE 153 (434)
T ss_pred HHHHHHHCCCHHHHHHHHhCCCCCCCc
Confidence 36889999999999999 888877654
No 122
>KOG1314|consensus
Probab=22.41 E-value=68 Score=26.08 Aligned_cols=42 Identities=21% Similarity=0.431 Sum_probs=29.0
Q ss_pred CCCCCCCCCCEEEEEEecCCCCCCeEEEE-------eCC----eeEEEcCCC-eeecC
Q psy7685 83 TDELSFKTGECIIVLRKGDENEREWWWSK-------LNN----KEGYVPRNL-LGLYP 128 (137)
Q Consensus 83 ~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-------~~g----~~G~~P~~y-v~~~~ 128 (137)
+..|++++||.|.+.+- -.+|..|. ..+ -+||||.++ ++..+
T Consensus 331 dprisL~p~d~i~~tr~----~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~~e 384 (414)
T KOG1314|consen 331 DPRISLPPGDGIKATRG----FNHWLYGEEILSEMFNESRERKIRGWFPRNCAVEKCE 384 (414)
T ss_pred CcccccCCCcceeeeee----eecccchhhhhhHHHhhcchhhhcccccccccccccc
Confidence 44589999999987764 33588883 111 479999988 55543
No 123
>PF07828 PA-IL: PA-IL-like protein; InterPro: IPR012905 The members of this family are similar to the galactophilic lectin-1 expressed by Pseudomonas aeruginosa (PA-IL, Q05097 from SWISSPROT). Lectins recognising specific carbohydrates found on the surface of host cells are known to be involved in the initiation of infections by this organism. The protein is thought to be organised into an extensive network of beta-sheets, as is the case with many other lectins []. ; PDB: 3ZYB_E 3ZYF_C 1L7L_A 3ZYH_A.
Probab=22.24 E-value=59 Score=22.04 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=12.0
Q ss_pred CCCCCCCCCCEEEEEEe
Q psy7685 83 TDELSFKTGECIIVLRK 99 (137)
Q Consensus 83 ~~eLs~~~Gd~i~vl~~ 99 (137)
..-|.+++||+|+|+..
T Consensus 15 ~TGl~lk~GD~IsIvA~ 31 (121)
T PF07828_consen 15 NTGLILKAGDIISIVAS 31 (121)
T ss_dssp EEEEEE-TT-EEEEEEE
T ss_pred eeeEEEcCCCEEEEEEe
Confidence 34588999999999875
No 124
>PHA02922 hypothetical protein; Provisional
Probab=20.26 E-value=35 Score=23.85 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=11.3
Q ss_pred hhhhhhcCCCchhhh
Q psy7685 6 IQKIHFTCTTLAVCS 20 (137)
Q Consensus 6 ~~~~~a~~~~~~~~~ 20 (137)
-|||+|.|.++--..
T Consensus 10 p~hc~~~~d~f~~~D 24 (153)
T PHA02922 10 PCHCHATKDSLNTVA 24 (153)
T ss_pred chhcCcchhcccccc
Confidence 489999998775443
Done!