RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7685
(137 letters)
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 123 bits (312), Expect = 2e-36
Identities = 66/110 (60%), Positives = 86/110 (78%)
Query: 27 CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
+FA T+SD +TAA KCEE EEG+ CS+FLY VQEK+GI+N G +YAL+DYE N DEL
Sbjct: 128 AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187
Query: 87 SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATP 136
K G+C+ ++ + DE+E EWWW++LN+KEGYVPRNLLGLYPR++P
Sbjct: 188 PMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKPRQRS 237
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 101 bits (254), Expect = 6e-28
Identities = 55/106 (51%), Positives = 75/106 (70%)
Query: 27 CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
IFATT SD TA KC+ EG+ C+ +L V++ +G++N+GAVYAL+DY A DEL
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL 171
Query: 87 SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP 132
SF+ GE + VLR+ E +WWW+ L+ +EGYVPRN GL+PRV+P
Sbjct: 172 SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKP 217
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 85.8 bits (213), Expect = 2e-23
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LL 124
N ALYD A + DELSF+ G+ + VL + + WW L+ ++G VP N L+
Sbjct: 3 NVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILV 62
Query: 125 GLYPR 129
G+Y +
Sbjct: 63 GMYDK 67
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 85.1 bits (211), Expect = 4e-23
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
+A+Y ++A N +ELS + + +L D EWW +++N K+GYVP N +
Sbjct: 16 YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG 75
Query: 131 QPS 133
S
Sbjct: 76 PSS 78
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 75.9 bits (187), Expect = 1e-19
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 65 GILNNGAVY-ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN------KEG 117
+ G Y L+D+++ +ELSF+ G+ V RK + +WWW+ L + +G
Sbjct: 5 DQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEE----QWWWATLLDEAGGAVAQG 60
Query: 118 YVPRNLLG 125
YVP N L
Sbjct: 61 YVPHNYLA 68
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 73.9 bits (182), Expect = 8e-19
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLYPRV 130
V YD++A N+ ELS K + + VL ++ R+WW + +EGYVP N+L YP
Sbjct: 11 VLCNYDFQARNSSELSVKQRDVLEVL----DDSRKWWKVRDPAGQEGYVPYNILTPYPAA 66
Query: 131 Q 131
Sbjct: 67 A 67
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 73.9 bits (182), Expect = 9e-19
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 130
V LY + + +EL+F+ GE + V+ K + + EWW K + G VP+N + +
Sbjct: 9 VQTLYPFSSVTEEELNFEKGETMEVIEKPENDP-EWWKCKNARGQVGLVPKNYVVVLSDG 67
Query: 131 QPS 133
Sbjct: 68 PAL 70
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 73.1 bits (180), Expect = 1e-18
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
A+ DY A + +LSF GE I++LR+ + WWW + GY+P N + V
Sbjct: 10 FVAIADYAATDETQLSFLRGEKILILRQTTAD---WWWGERAGCCGYIPAN----H--VG 60
Query: 132 PSATP 136
+ P
Sbjct: 61 KHSGP 65
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 73.6 bits (181), Expect = 2e-18
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
+ + V ALYDY + + D+LSF+ G+ ++VL + EWW S KEGY+P N
Sbjct: 1 MEDIIVVALYDYVSWSPDDLSFQKGDQMVVLEE----SGEWWKARSLATRKEGYIPSN 54
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 72.8 bits (179), Expect = 2e-18
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
AL DY ++T L FK + I + K EN +W+ +LN KEG P + + +
Sbjct: 13 ARALKDYNVSDTSLLPFKRNDIITITFKDQEN--KWFMGQLNGKEGSFPVDHVEILLSDV 70
Query: 132 PSATPQ 137
P P
Sbjct: 71 PPPQPV 76
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 72.9 bits (179), Expect = 2e-18
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
Y+ E+SF G + VL K + WW+ + EG+ P + L L Q
Sbjct: 11 YMTCSAYQKVQDSEISFPAGVEVQVLEKQES---GWWYVRFGELEGWAPSHYLVLDENEQ 67
Query: 132 PSATPQ 137
P + +
Sbjct: 68 PDPSGK 73
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 72.9 bits (179), Expect = 4e-18
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 130
V LY + + +EL+F+ GE + V+ K + + EWW K + G VP+N + +
Sbjct: 20 VQTLYPFSSVTEEELNFEKGETMEVIEKPENDP-EWWKCKNARGQVGLVPKNYVVVLSDG 78
Query: 131 QPSATPQ 137
Sbjct: 79 PALHPAH 85
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 71.8 bits (177), Expect = 4e-18
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALYD+ A+ + LS GE + VL + EW ++ N +G+VP
Sbjct: 8 FVALYDFVASGDNTLSITKGEKLRVLGY--NHNGEWCEAQTKNGQGWVPSA 56
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 72.0 bits (177), Expect = 6e-18
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LLGLY 127
A++D+ EL+FK G+ I VL +++ WWW +++++EG+ P + +
Sbjct: 13 AEAVWDHVTMANRELAFKAGDVIKVLDASNKD---WWWGQIDDEEGWFPASFVRLWVNQE 69
Query: 128 PRVQPSATPQ 137
V+ + P
Sbjct: 70 DEVEEGSGPS 79
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 71.7 bits (176), Expect = 8e-18
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
V ALYDY+ + E++ K G+ + +L +++ WW ++N+++G+VP + Q
Sbjct: 5 VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAAYVKKLDPAQ 61
Query: 132 PSATPQ 137
++
Sbjct: 62 SASREN 67
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 71.2 bits (175), Expect = 9e-18
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLLGLYPR 129
+Y Y+A+ DEL+ + E + V+ GD E W + GYVP L
Sbjct: 16 CKVVYSYKASQPDELTIEEHEVLEVIEDGDM---EDWVKARNKVGQVGYVPEKYLQFPTS 72
Query: 130 VQPSA 134
PS+
Sbjct: 73 SGPSS 77
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 71.2 bits (175), Expect = 1e-17
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
ALYDYEA D+LSF GE +L + + WW S + GY+P N
Sbjct: 18 FVALYDYEAITEDDLSFHKGEKFQILNSSEGD---WWEARSLTTGETGYIPSN 67
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 71.2 bits (175), Expect = 1e-17
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V ALYDY+ + E++ K G+ + +L +++ WW ++N+++G+VP
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA 55
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 70.7 bits (174), Expect = 1e-17
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 130
V LYD+ A N +ELS E + VL G +WW + + + GYVP N+LG
Sbjct: 10 VKILYDFTARNANELSVLKDEVLEVLEDGR----QWWKLRSRSGQAGYVPCNILGEAS-- 63
Query: 131 QPSA 134
PS+
Sbjct: 64 GPSS 67
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 71.2 bits (175), Expect = 1e-17
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
A +DY ELSFK G +++ ++ ++ WW + N +G +P + +
Sbjct: 12 AIAKFDYVGRTARELSFKKGASLLLYQRASDD---WWEGRHNGIDGLIPHQYIVVQDTSG 68
Query: 132 PSA 134
PS+
Sbjct: 69 PSS 71
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 70.9 bits (174), Expect = 1e-17
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
V ALYDY+ + E++ K G+ + +L +++ WW ++N+++G+VP +
Sbjct: 20 VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAAYVKKLAAAW 76
Query: 132 PS 133
Sbjct: 77 SH 78
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 70.4 bits (173), Expect = 2e-17
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
+ +Y+ ELS + GE + V+ K + WW+ + ++G+VP L
Sbjct: 11 YVVVSNYKKQENSELSLQAGEVVDVIEKNESG---WWFVSTSEEQGWVPATYLEAQNSGP 67
Query: 132 PSA 134
S
Sbjct: 68 SSG 70
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 70.3 bits (173), Expect = 2e-17
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
L+ + +EL G + VL+KG++N W N ++G VP N
Sbjct: 12 VLFGFVPETKEELQVMPGNIVFVLKKGNDN---WATVMFNGQKGLVPCN 57
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 69.5 bits (171), Expect = 2e-17
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
GA+ A+Y YEA DE+S G+ I V+R D + W + + + +G P +
Sbjct: 1 GAMEAIYAYEAQGDDEISIDPGDIITVIRGDDGS--GWTYGECDGLKGLFPTS 51
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 70.0 bits (172), Expect = 3e-17
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP 128
+ LY++EA N EL+ GE + VL WW K + GY+P N+L
Sbjct: 10 MQVLYEFEARNPRELTVVQGEKLEVLDHSK----RWWLVKNEAGRSGYIPSNILEPLS 63
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 69.6 bits (171), Expect = 4e-17
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
ALYD + +DEL+F G+ + +L + WW L+ ++G P N R+Q
Sbjct: 10 ARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPAN------RLQ 63
Query: 132 PSATP 136
+ P
Sbjct: 64 ILSGP 68
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 69.8 bits (171), Expect = 4e-17
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
V AL Y +N LSF G+ I +L E W + + G P + VQ
Sbjct: 11 VIALRSYITDNCSLLSFHRGDLIKLLPV-ATLEPGWQFGSAGGRSGLFPAD----I--VQ 63
Query: 132 PSATP 136
P+A P
Sbjct: 64 PAAAP 68
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 69.3 bits (170), Expect = 5e-17
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V ALYDYE DELSF G I +L K ++++ +W + N + G P
Sbjct: 11 VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSV 61
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 69.2 bits (170), Expect = 5e-17
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALY Y + +L+F GE I+V +K + EWW + ++ G P N
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQK----DGEWWTGSIGDRSGIFPSN 57
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 69.2 bits (170), Expect = 5e-17
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V LYDY+ + EL+ K G+ + +L +++ WW ++N ++G+VP
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLLNSTNKD---WWKIEVNGRQGFVPAA 56
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 69.3 bits (170), Expect = 6e-17
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
+ Y + + DE+ F+ G + V+RK E WW+ + KEG+ P + L
Sbjct: 11 YVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEG---WWYIRYLGKEGWAPASYLKKAKDSG 67
Query: 132 PSA 134
PS+
Sbjct: 68 PSS 70
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 69.3 bits (170), Expect = 6e-17
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 130
V A +DY A EL K E + +L ++ + WW + NK G+VP N +
Sbjct: 10 VVAKFDYVAQQEQELDIKKNERLWLL----DDSKSWWRVRNSMNKTGFVPSNYVERKNSA 65
Query: 131 QPSA 134
+ +A
Sbjct: 66 RAAA 69
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 68.8 bits (169), Expect = 7e-17
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALY +E DEL F+ G+ I + D N WW + G +P N
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSN 57
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 69.4 bits (170), Expect = 8e-17
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
V ALYD+EA +EL+FK GE IIVL D N WW + + G P N + ++
Sbjct: 20 VRALYDFEAVEDNELTFKHGEIIIVLDDSDAN---WWKGENHRGIGLFPSNFVTTNLNIE 76
Query: 132 PSATPQ 137
A
Sbjct: 77 TEAAAV 82
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 69.4 bits (170), Expect = 9e-17
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS-KLNNK-EGYVPRNLLGLYPR 129
A YD+ A + +E+SF+ G+ + + K + + W L+ + G +P N + + +
Sbjct: 20 ARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGK 79
Query: 130 VQPSATPQ 137
+ T +
Sbjct: 80 RRGRKTIE 87
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 68.3 bits (168), Expect = 9e-17
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 66 ILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
++ + AL+D+ N+ EL+FK G+ I +L + +++ W + G P +
Sbjct: 1 LIKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLS 54
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 68.6 bits (168), Expect = 1e-16
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 18/75 (24%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---------NNKEGYVPRN 122
AL+DY+A ++LSF+ G+ + VL E WW ++ +GY+P N
Sbjct: 10 FVALFDYQARTAEDLSFRAGDKLQVLDTSHEG---WWLARHLEKKGTGLGQQLQGYIPSN 66
Query: 123 LLGLYPRVQPSATPQ 137
Y V + P
Sbjct: 67 ----Y--VAEDSGPS 75
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 68.1 bits (167), Expect = 1e-16
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
V ALY Y+ + D+LSFK GE + VL E EWW S L KEG++P N
Sbjct: 10 VVALYPYDGIHPDDLSFKKGEKMKVL----EEHGEWWKAKSLLTKKEGFIPSN 58
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 68.6 bits (168), Expect = 1e-16
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
V ALYDYEA + ++LSF+ G+ ++VL + EWW S KEGY+P N
Sbjct: 28 VVALYDYEAIHHEDLSFQKGDQMVVLEESG----EWWKARSLATRKEGYIPSN 76
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 68.5 bits (168), Expect = 1e-16
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
A + Y ELSF+ G+ + + + + WW + N G +P
Sbjct: 13 AVACFAYTGRTAQELSFRRGDVLRLHERASSD---WWRGEHNGMRGLIPHK 60
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 68.0 bits (167), Expect = 1e-16
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALY + ++L + G+ I +L +E+ WW K+ ++ G+ P N
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNED---WWKGKIQDRIGFFPAN 57
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 67.6 bits (166), Expect = 1e-16
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALYD+EA DEL F++GE + VL + + WW +L+NK G P N
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPS---WWTGRLHNKLGLFPAN 51
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 68.1 bits (167), Expect = 1e-16
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN---LLGLYP 128
ALYD+E N EL FK G+ I + + DEN W+ L+ G+ P N +L P
Sbjct: 10 CRALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMLHGHSGFFPINYVEILVALP 66
Query: 129 RVQPSA 134
PS+
Sbjct: 67 HSGPSS 72
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 67.6 bits (166), Expect = 2e-16
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
A +DY + ELSFK G +++ + E+ WW + N +G VP
Sbjct: 9 AIAKFDYVGRSARELSFKKGASLLLYHRASED---WWEGRHNGIDGLVPHQ 56
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 68.1 bits (167), Expect = 2e-16
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRN 122
A Y++ +L F G+ + ++ + W+ +K +EG +P N
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDP--NWYKAKNKVGREGIIPAN 63
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 68.6 bits (168), Expect = 2e-16
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V A+YDY ANN DELSF G+ I V+ K D + WW ++N G P N
Sbjct: 37 VIAMYDYAANNEDELSFSKGQLINVMNKDDPD---WWQGEINGVTGLFPSN 84
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 67.8 bits (166), Expect = 2e-16
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
L Y A E++ K G+ + +L +++ WW ++N+++G+VP
Sbjct: 5 PLPPYSAGG-REVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA 49
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 67.7 bits (166), Expect = 2e-16
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALYDY A N DEL G+ + V+ +G++ WW + N + G+VP +
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGEDG---WWTVERNGQRGFVPGS 58
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 67.2 bits (165), Expect = 2e-16
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V AL+D+ + EL+FK G+ I ++ K D N WW +LNN+ G P N
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSN 52
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 67.6 bits (166), Expect = 2e-16
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
AL+ Y A+ +EL + GE I VL K + W S L + G P +
Sbjct: 10 FVALHTYSAHRPEELDLQKGEGIRVLGKYQDG---WLKGLSLLTGRTGIFPSD 59
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 67.3 bits (165), Expect = 3e-16
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
V AL+D+ N+ ++L FK G+ + + K +E WW K G +P
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ----WWNAEDSEGKRGMIPVP 54
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 67.8 bits (166), Expect = 3e-16
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
V ALY +E +L+F+ G+ I V+ K D +WW KL + G P N Y V
Sbjct: 20 VTALYSFEGQQPGDLNFQAGDRITVISKTDS-HFDWWEGKLRGQTGIFPAN----Y--VT 72
Query: 132 PSATP 136
++ P
Sbjct: 73 MNSGP 77
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 66.8 bits (164), Expect = 3e-16
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
V ALY ++ +L K G+ + +L K W+ N + G P N Y V+
Sbjct: 5 VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPE---WYKGSCNGRTGIFPAN----Y--VK 55
Query: 132 P 132
P
Sbjct: 56 P 56
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 66.8 bits (164), Expect = 3e-16
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALY +E DEL F+ G+ I + D N WW + G +P N
Sbjct: 6 FRALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSN 53
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 66.9 bits (164), Expect = 3e-16
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V ALYD+EA +EL+FK GE I VL D N WW + + G P N
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDAN---WWQGENHRGTGLFPSN 55
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 67.4 bits (165), Expect = 3e-16
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V A+YDY + DELSF+ G I V++K D+ W+ +N G P N
Sbjct: 20 VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDG---WYEGVMNGVTGLFPGN 67
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 67.4 bits (165), Expect = 4e-16
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
V ALYDY+ N+ EL+ + E +L + + WW + N EGY P +
Sbjct: 23 VIALYDYQTNDPQELALRCDEEYYLLDSSEIH---WWRVQDKNGHEGYAPSS 71
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 66.8 bits (164), Expect = 4e-16
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
V AL+D+ N+ ++L FK G+ + + K +E WW K G +P
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ----WWNAEDSEGKRGMIPVP 52
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 67.4 bits (165), Expect = 4e-16
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
ALYDYEA D+LSF GE +L + +WW S + GY+P
Sbjct: 8 FEALYDYEARTEDDLSFHKGEKFQILNSSEG---DWWEARSLTTGETGYIPSI 57
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 67.4 bits (165), Expect = 4e-16
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
ALYDY A +LSF GE +L G + WW S + GY+P N
Sbjct: 9 FVALYDYNATRWTDLSFHKGEKFQILEFGPGD---WWEARSLTTGETGYIPSN 58
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 67.9 bits (166), Expect = 5e-16
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
ALYDYEA T++LSFK GE ++ + + WW S K GY+P N
Sbjct: 30 FVALYDYEARTTEDLSFKKGERFQIINNTEGD---WWEARSIATGKSGYIPSN 79
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 66.5 bits (163), Expect = 6e-16
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
A +D++A EL + G+ + + ++ D+N W+ + + + G PR
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQN---WYEGEHHGRVGIFPRT 57
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 66.7 bits (163), Expect = 6e-16
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
+ L DY + + F+ GE + V+ +E WW S +E Y+P
Sbjct: 20 LAVLSDYPSPDISPPIFRRGEKLRVI----SDEGGWWKAISLSTGRESYIPGI 68
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 66.6 bits (163), Expect = 6e-16
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
AL D+E ++ DEL F+ + I ++ + DE+ W +LN G+ P
Sbjct: 12 ALLDFERHDDDELGFRKNDIITIISQKDEH---CWVGELNGLRGWFPAK 57
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 66.0 bits (162), Expect = 7e-16
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALY + + +L F+ G+ I +L+K D +WW ++N +EG P N
Sbjct: 6 AVALYSFAGEESGDLPFRKGDVITILKKSDSQN-DWWTGRVNGREGIFPAN 55
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 66.6 bits (163), Expect = 8e-16
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
V ALYDY+ N+ EL+ + E +L + + WW + N EGYVP +
Sbjct: 22 VIALYDYQTNDPQELALRRNEEYCLLDSSEIH---WWRVQDRNGHEGYVPSS 70
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 65.7 bits (161), Expect = 9e-16
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
V AL+ YEA ++L F+ G+ I+VL K +E W + K G P+ + V+
Sbjct: 8 VEALFSYEATQPEDLEFQEGDIILVLSKVNEE---WLEGESKGKVGIFPKV----F--VE 58
Query: 132 PSAT 135
SAT
Sbjct: 59 DSAT 62
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 65.7 bits (161), Expect = 1e-15
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
L+ Y N DEL+F+ GE I ++ K + E WW +LN KEG P N
Sbjct: 9 CRTLFPYTGTNEDELTFREGEIIHLISK-ETGEAGWWKGELNGKEGVFPDN 58
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 65.7 bits (161), Expect = 1e-15
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRN 122
V ALYDY N ++L + G+ +L + + WW ++ N +EGY+P N
Sbjct: 11 VVALYDYMPMNANDLQLRKGDEYFILEESNLP---WWRARDKNGQEGYIPSN 59
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 66.3 bits (162), Expect = 1e-15
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
LYDY+A N+ ELS E I V + +W + N++G VP
Sbjct: 22 VLYDYDAANSTELSLLADEVITVFSVVGMDS-DWLMGERGNQKGKVPIT 69
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 65.7 bits (161), Expect = 1e-15
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V AL+D++ EL F+ G+ I V+ D N WW + + G PRN
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 52
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 66.4 bits (162), Expect = 1e-15
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
V A +DY A EL K E + +L ++ + WW + N+ GYVP N
Sbjct: 34 VIAKWDYTAQQDQELDIKKNERLWLL----DDSKTWWRVRNAANRTGYVPSN 81
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 65.3 bits (160), Expect = 1e-15
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
YD+ A + DEL+ K+G+ + +L D+ ++WW +L + K G VP
Sbjct: 7 VQYDFMAESQDELTIKSGDKVYILD--DKKSKDWWMCQLVDSGKSGLVPAQ 55
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 65.8 bits (161), Expect = 1e-15
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
AL+D+ N+ EL+FK G+ I +L + +++ W + G P +
Sbjct: 21 AEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLS 68
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 65.7 bits (161), Expect = 1e-15
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
YD+ A + DEL+ K+G+ + +L D+ ++WW +L + K G VP
Sbjct: 9 GIVQYDFMAESQDELTIKSGDKVYILD--DKKSKDWWMCQLVDSGKSGLVPAQ 59
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 65.7 bits (161), Expect = 1e-15
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
LYD+E N EL FK G+ I + + DEN W+ ++ + G+ P N
Sbjct: 6 CRGLYDFEPENQGELGFKEGDIITLTNQIDEN---WYEGMIHGESGFFPIN 53
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 65.3 bits (160), Expect = 1e-15
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V ALYDY+A DEL+FK G+ IIV +K WW +LN K G+VP N
Sbjct: 6 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAG---WWEGELNGKRGWVPAN 53
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 65.4 bits (160), Expect = 2e-15
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
A+Y +E ++ +S GE + ++ + + W + EGYVP +
Sbjct: 12 AIYHFEGSSEGTISMAEGEDLSLMEEDKG---DGWTRVRRKEGGEGYVPTS 59
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 65.4 bits (160), Expect = 2e-15
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V A+YD+EA +EL+FK GE I VL D N WW + + G P N
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDPN---WWKGETHQGIGLFPSN 67
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 65.1 bits (159), Expect = 2e-15
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--------NNKEGYVPRN 122
V ALYDY+ + E++ K G+ + +L +++ WW ++ ++G+VP
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVKITVNGKTYERQGFVPAA 59
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 65.4 bits (160), Expect = 2e-15
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
A+ D+ A +L+FK GE ++V+ K + WW +K EG VPR
Sbjct: 13 YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDG---WWIAKDAKGNEGLVPRT 61
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 65.0 bits (159), Expect = 2e-15
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
V A+YD++A +L + G+ I+L K D + WW ++ EGY+P N
Sbjct: 5 VVAMYDFQATEAHDLRLERGQEYIILEKNDLH---WWRARDKYGSEGYIPSN 53
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 64.6 bits (158), Expect = 2e-15
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
V AL+ YE ++ +L F+ GE + +L E EWW S +EG++P N
Sbjct: 9 VIALHSYEPSHDGDLGFEKGEQLRIL----EQSGEWWKAQSLTTGQEGFIPFN 57
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 65.0 bits (159), Expect = 3e-15
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALYD+E N EL F+ G+ I + + DEN W+ L+ + G+ P +
Sbjct: 16 CKALYDFEPENDGELGFREGDLITLTNQIDEN---WYEGMLHGQSGFFPLS 63
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 64.5 bits (158), Expect = 3e-15
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
+DY+A + DEL+ GE I +RK D WW ++N + G P N
Sbjct: 4 AIVEFDYQAQHDDELTISVGEIITNIRKEDGG---WWEGQINGRRGLFPDN 51
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 65.0 bits (159), Expect = 3e-15
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
A YD++A DELSFK G+ + VL + E ++ W+ ++LN K+G++P+N
Sbjct: 12 AIAKYDFKATADDELSFKRGDILKVLNE--ECDQNWYKAELNGKDGFIPKN 60
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 64.6 bits (158), Expect = 3e-15
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
+ Y N DEL K G+ I V+ + +E WW LN K G P N
Sbjct: 10 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEG---WWEGVLNGKTGMFPSN 57
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 64.6 bits (158), Expect = 3e-15
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 130
+ YD+ A N+ ELS + + +L ++ R+WW + + G+VP N+L +
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLEIL----DDRRQWWKVRNASGDSGFVPNNILDIMRTP 59
Query: 131 Q 131
+
Sbjct: 60 E 60
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 64.5 bits (158), Expect = 3e-15
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALY Y+A +TDELSF + I ++++ WW +L K+G P N
Sbjct: 8 CKALYAYDAQDTDELSFNANDIIDIIKEDPSG---WWTGRLRGKQGLFPNN 55
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 64.5 bits (158), Expect = 3e-15
Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
+D++A + EL+ + G+ + + ++ D+N W + + + G P N
Sbjct: 6 LKFDFQAQSPKELTLQKGDIVYIHKEVDKN---WLEGEHHGRLGIFPAN 51
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 64.5 bits (158), Expect = 3e-15
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
V ALYDY+ DELSFK G+ + L + DE W G + LGLYP
Sbjct: 6 VRALYDYDGQEQDELSFKAGDELTKLGEEDEQ---GWC------RGRLDSGQLGLYP 53
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 65.1 bits (159), Expect = 3e-15
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALYDY+A DE+SF + I + D+ WW + G P N
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPAN 67
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 64.6 bits (158), Expect = 3e-15
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
L++Y N DEL K G+ I + + +E WW LNNK G P N
Sbjct: 4 CKVLFEYIPQNEDELELKVGDIIDINEEVEEG---WWSGTLNNKLGLFPSN 51
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 64.2 bits (157), Expect = 4e-15
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
V A +DY A EL K E + +L ++ + WW + N+ GYVP N
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLL----DDSKTWWRVRNAANRTGYVPSN 54
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 64.2 bits (157), Expect = 4e-15
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
L++Y N DEL K G+ I + + +E WW LNNK G P N
Sbjct: 10 CKVLFEYIPQNEDELELKVGDIIDINEEVEEG---WWSGTLNNKLGLFPSN 57
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 64.8 bits (158), Expect = 5e-15
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALY +EA N DE+SF +G+ I V K E W + G+ P N
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEK-TVGEPGWLYGSFQGNFGWFPCN 57
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 64.8 bits (158), Expect = 5e-15
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW--WSKLNNKEGYVPRN 122
A Y ++ + ELSF+ GE I ++RK +EN W+ ++G P +
Sbjct: 20 AVAQYTFKGDLEVELSFRKGEHICLIRKVNEN---WYEGRITGTGRQGIFPAS 69
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 67.3 bits (164), Expect = 5e-15
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
A+ DYE + E++ TG+ + V+ K + WW+ ++ K G++P + L
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESG---WWFCQMKAKRGWIPASFLEPLDSPD 70
Query: 132 PSATPQ 137
+ P+
Sbjct: 71 ETEDPE 76
Score = 66.6 bits (162), Expect = 9e-15
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
A+ Y A DE+S GE + V+ K + WW + ++ GY P L +
Sbjct: 84 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFPSMYLQKSGQDV 140
Query: 132 PSATPQ 137
A Q
Sbjct: 141 SQAQRQ 146
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 64.2 bits (157), Expect = 5e-15
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
AL +Y N +L F G+ I++ R+ DEN W+ ++N G P +
Sbjct: 12 ALCNYRGKNPGDLKFNKGDVILLRRQLDEN---WYQGEINGVSGIFPAS 57
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 64.3 bits (157), Expect = 6e-15
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALY ++A DEL+ + G+ +I+ K +E WW+ LN K+G+ P
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEG---WWFGSLNGKKGHFPAA 57
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 63.8 bits (156), Expect = 6e-15
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALYDY+A DE+SF + I + D+ WW + G P N
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPAN 59
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 63.8 bits (156), Expect = 6e-15
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V A ++++ N DELSF G+ I V R + WW N + G+ P N
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGG---WWEGTHNGRTGWFPSN 56
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 63.9 bits (156), Expect = 7e-15
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 72 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
V A+ Y +TDE+SF G+ IV + ++ W W + +++G + +
Sbjct: 10 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDG---WMWVTNLRTDEQGLIVED 60
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 63.7 bits (156), Expect = 7e-15
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS-KLNNKEGYVPRN 122
YDY+A + DEL+ + GE I ++K E E W +LN + G P N
Sbjct: 4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQE---EGWLEGELNGRRGMFPDN 52
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 63.8 bits (156), Expect = 7e-15
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDN 54
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 63.9 bits (156), Expect = 8e-15
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N
Sbjct: 12 CKVIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDN 61
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 63.9 bits (156), Expect = 8e-15
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
A Y++ A + ELS + G+ + + + ++ WW + N + G+ P
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSR-IGGDQGWWKGETNGRIGWFPST 59
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 63.9 bits (156), Expect = 8e-15
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V A ++++ N DELS G+ I V R + WW LN + G+ P N
Sbjct: 13 VKARFNFKQTNEDELSVCKGDIIYVTRVEEGG---WWEGTLNGRTGWFPSN 60
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 63.9 bits (156), Expect = 8e-15
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN---NKEGYVPRNLLGLYP 128
V +YD +A+N DEL+F GE IIV + D+ WW + ++G P + + +
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQE---WWIGHIEGQPERKGVFPVSFVHILS 69
Query: 129 RVQPSA 134
PS+
Sbjct: 70 DSGPSS 75
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 63.4 bits (155), Expect = 8e-15
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V A ++++ N DELSF G+ I V R + WW N + G+ P N
Sbjct: 7 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGG---WWEGTHNGRTGWFPSN 54
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 63.5 bits (155), Expect = 9e-15
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRNLLGLYPRV 130
V ALYDY AN +DEL+ G+ I V K +E+ WW+ + +EGY P N + V
Sbjct: 9 VVALYDYTANRSDELTIHRGDIIRVFFKDNED---WWYGSIGKGQEGYFPAN----H--V 59
Query: 131 QPSATPQ 137
Q
Sbjct: 60 ASETLYQ 66
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 63.0 bits (154), Expect = 1e-14
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS---KLNNKEGYVPRN 122
A YDY+A +EL+F + II + D++ WW + + +G P N
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDD----WWLGELEKDGSKGLFPSN 52
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 63.4 bits (155), Expect = 1e-14
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
++ YEA N DEL+ K G+ + ++ K D + WW +LN + G P N
Sbjct: 10 CKVIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDN 59
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 64.0 bits (156), Expect = 1e-14
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
+ Y N DEL K G+ I V+ + +E WW LN K G P N
Sbjct: 23 VAFSYLPQNDDELELKVGDIIEVVGEVEEG---WWEGVLNGKTGMFPSN 68
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 63.0 bits (154), Expect = 1e-14
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
A+Y Y N DEL + G+ + V+++ D+ W+ S+ K G P N
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDDG---WFVGVSRRTQKFGTFPGN 59
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 63.0 bits (154), Expect = 1e-14
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRN 122
A +++ + E+SF+ GE I +LR+ DEN W+ ++ +++G P
Sbjct: 12 AKFNFNGDTQVEMSFRKGERITLLRQVDEN---WYEGRIPGTSRQGIFPIT 59
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 63.0 bits (154), Expect = 1e-14
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRN 122
G A +++ + E+SF+ GE I +LR+ DEN W+ ++ +++G P
Sbjct: 7 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDEN---WYEGRIPGTSRQGIFPIT 58
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 63.1 bits (154), Expect = 2e-14
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
AL + A + L+F + I VL + EN WW+ +++ G+ P++
Sbjct: 13 AQALCSWTAKKDNHLNFSKHDIITVLEQ-QEN---WWFGEVHGGRGWFPKS 59
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 63.3 bits (154), Expect = 2e-14
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
Y ++Y A DELS G +IV+ K + WW N + G+ P N
Sbjct: 20 AYVKFNYMAEREDELSLIKGTKVIVMEKCSDG---WWRGSYNGQVGWFPSN 67
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 63.2 bits (154), Expect = 2e-14
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
++ EL+F+ G+ + +L + + W+ + +EG +
Sbjct: 20 CITKCEHTRPKPGELAFRKGDVVTILEACEN---KSWYRVKHHTSGQEGLLAAG 70
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 62.2 bits (152), Expect = 2e-14
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
LY Y + DE++ G+ I ++ + W + + G VP
Sbjct: 6 VLYAYVQKDDDEITITPGDKISLVARDTG---SGWTKINNDTTGETGLVPTT 54
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 63.0 bits (153), Expect = 3e-14
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 72 VYALYDYEANNT--------DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
AL+DY+ +EL FK G+ I V D + ++ + + G +P N
Sbjct: 20 FVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADG--FYRGETCARLGLIPCN 76
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 61.9 bits (151), Expect = 4e-14
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-----KEGYVPRN 122
V A + Y+++ D+L+F+ + IIV D EW++ + + EG P++
Sbjct: 10 VVAQFPYKSDYEDDLNFEKDQEIIVTSVEDA---EWYFGEYQDSNGDVIEGIFPKS 62
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 61.1 bits (149), Expect = 7e-14
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALY +A + ELSF G + E W LN K G +P N
Sbjct: 13 AKALYACKAEHDSELSFTAGTVFDNVHPSQEP--GWLEGTLNGKTGLIPEN 61
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 61.1 bits (149), Expect = 7e-14
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK-EGYVPRN 122
V ALYDY+A +DEL+F G I + K WW + + Y P N
Sbjct: 10 VKALYDYKAKRSDELTFCRGALIHNVSKEPGG---WWKGDYGTRIQQYFPSN 58
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 62.1 bits (151), Expect = 8e-14
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 70 GAVYA--LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRN 122
G++YA LYD++A DEL+ GE + + + EW+ +K G VP
Sbjct: 4 GSLYAIVLYDFKAEKADELTTYVGENLFICAHHNC---EWFIAKPIGRLGGPGLVPVG 58
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 62.3 bits (151), Expect = 9e-14
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRNLLGLYPRV 130
LY+++A DEL GE + + D EW+ +K N G VP + + + +
Sbjct: 8 TLYEFKAERDDELDVSPGENLSICAHYDY---EWFIAKPINRLGGPGLVPVSYVRIIDLM 64
Query: 131 QPSATP 136
P+
Sbjct: 65 DPAKYA 70
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 60.9 bits (148), Expect = 1e-13
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 72 VYALYDYEANNTD-ELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRN 122
ALYD+ N + E++ K G+ + +L K D + +WW + N GY+P N
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 64.3 bits (156), Expect = 1e-13
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
A YD++A DELSFK G+ + VL + E ++ W+ ++LN K+G++P+N
Sbjct: 5 AKYDFKATADDELSFKRGDILKVLNE--ECDQNWYKAELNGKDGFIPKN 51
Score = 59.3 bits (143), Expect = 7e-12
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V AL+D++ EL F+ G+ I V+ D N WW + + G PRN
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 208
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 61.0 bits (148), Expect = 2e-13
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
+Y Y N DEL G+ I + + E W S G +P N
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPEN 72
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 60.6 bits (147), Expect = 2e-13
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENERE--WWWSKLNN-KEGYVPRNLLGLYP 128
A++DYEA +EL+ + G+ + VL + + WW +L + + G P N Y
Sbjct: 32 WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSN----Y- 86
Query: 129 RVQP 132
V P
Sbjct: 87 -VAP 89
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 62.0 bits (150), Expect = 2e-13
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
A YD+ A + ELS K G+ I +L K + ++ WW ++ + G+ P N +
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIKILNK--KGQQGWWRGEIYGRIGWFPSNYV 58
Score = 31.2 bits (70), Expect = 0.050
Identities = 4/47 (8%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 59 SVQEKLGILNNGAVYALYDYEANNTDELSFKTGE--CIIVLRKGDEN 103
+ E + V+ Y + E ++ + + +
Sbjct: 92 TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEHSLEHH 138
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 60.1 bits (146), Expect = 2e-13
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 72 VYALYDYEANNTD-ELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRN 122
ALYD+ N + E++ K G+ + +L K D + +WW + N GY+P N
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 64
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 59.5 bits (145), Expect = 2e-13
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRN 122
V AL+DY+A DEL+F I + K D WW K+ + P N
Sbjct: 6 VKALFDYKAQREDELTFTKSAIIQNVEKQDGG---WWRGDYGGKKQLWFPSN 54
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 59.1 bits (144), Expect = 4e-13
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
ALYD+E N +EL G+ + + K + W ++ +K G VP
Sbjct: 6 ALYDFEPENDNELRLAEGDIVFISYKHGQG----WLVAENESGSKTGLVPEE 53
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 59.8 bits (145), Expect = 4e-13
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 72 VYALYDYEANNTD-ELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRNLLGLY 127
ALYD+ N + E++ K G+ + +L K D + +WW + N GY+P N + +
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 76
Query: 128 PRVQPSATPQ 137
R +
Sbjct: 77 KRRKKIEHVD 86
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 58.9 bits (143), Expect = 5e-13
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
ALYD+E N +EL G+ + + K + W ++ +K G VP
Sbjct: 10 ALYDFEPENDNELRLAEGDIVFISYKHGQG----WLVAENESGSKTGLVPEE 57
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 58.8 bits (143), Expect = 6e-13
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRN 122
V AL+DY+A DEL+F I + K + WW K+ + P N
Sbjct: 9 VKALFDYKAQREDELTFIKSAIIQNVEKQEGG---WWRGDYGGKKQLWFPSN 57
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 59.7 bits (144), Expect = 8e-13
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENERE--WWW----------SKLNNKEGYV 119
V A +DY A +TDEL K G+ ++V+ + E++ W +L G
Sbjct: 47 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVF 106
Query: 120 PRN 122
P N
Sbjct: 107 PEN 109
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 58.0 bits (141), Expect = 9e-13
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
A+YDY A + DE+SF+ G+ I+ ++ D+ W + + G +P N
Sbjct: 11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDG----WMYGTVQRTGRTGMLPAN 58
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 58.2 bits (141), Expect = 1e-12
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN 113
V ALYDY+ + E++ K G+ + +L +++ WW ++N
Sbjct: 24 VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVN 62
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 58.8 bits (142), Expect = 1e-12
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 72 VYALYDYE------ANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNL 123
A Y Y N EL G+ + V DE + ++ L+ + G VP N
Sbjct: 20 CVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDE---DGFYEGELLDGQRGLVPSNF 76
Query: 124 LGLYPRVQPSATPQ 137
+ +
Sbjct: 77 VDFVQDNESRLAST 90
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 58.2 bits (141), Expect = 1e-12
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 72 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 124
V A+ Y +TDE+SF G+ IV + ++ W W + +++G + +L+
Sbjct: 8 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDG---WMWVTNLRTDEQGLIVEDLV 60
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 57.7 bits (140), Expect = 2e-12
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 74 ALYDYEAN-NTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
A YD+ + ++ EL K G+ + + R W +KL +KEG+VP
Sbjct: 7 AAYDFPGSGSSSELPLKKGDIVFISRDEPSG---WSLAKLLDGSKEGWVPTA 55
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 57.8 bits (140), Expect = 2e-12
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 72 VYALYDYEANNT-------DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
+ ALYDY+ + EL+F TG+ I V + DE+ +++ +LN ++G VP N
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDED--GFYYGELNGQKGLVPSN 65
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 61.9 bits (149), Expect = 2e-12
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
AL+D+ N+ EL+FK G+ I +L + +++ W + G P + + +
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLSFVKILKDFP 233
Query: 132 PSATPQ 137
P
Sbjct: 234 EEDDPT 239
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 60.2 bits (145), Expect = 2e-12
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 43 CEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDE 102
F+ S+ V + + +L F+ GE + +L K ++
Sbjct: 92 IPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQ 151
Query: 103 NEREWWWSK-LNNKEGYVPRN 122
+ WW ++ G VP N
Sbjct: 152 D---WWEARNALGTTGLVPAN 169
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 57.3 bits (139), Expect = 2e-12
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 67 LNNGAVY--ALYDYEAN--NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
L NG +Y + N + L+ + GE + V + W + N K G+ P
Sbjct: 2 LQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSG---QWEGECNGKRGHFPFT 58
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 57.5 bits (139), Expect = 2e-12
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 80 ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ 137
A E++ K G+ + +L +++ WW ++N+++G+VP Y + S T +
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA----YVKKLDSGTGK 52
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 57.5 bits (139), Expect = 3e-12
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
A + L+ + G+ + V R W ++N ++G P
Sbjct: 21 AIQKRVPCAYDKTALALEVGDIVKVTRMNING---QWEGEVNGRKGLFPFT 68
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 57.0 bits (138), Expect = 3e-12
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 72 VYALYDYEANNTD--ELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
ALY Y+A++ D E+SF+ E + V + E WW ++ N + G +P N
Sbjct: 8 AKALYPYDADDDDAYEISFEQNEILQVS----DIEGRWWKARRANGETGIIPSN 57
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 57.1 bits (138), Expect = 4e-12
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK-----EGYVPRN 122
Y A+ +++LS G+ I++L+K WW +L + +G+ P +
Sbjct: 10 AQVTSAYVASGSEQLSLAPGQLILILKKNTSG---WWQGELQARGKKRQKGWFPAS 62
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 57.3 bits (138), Expect = 4e-12
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLGLYPRVQP 132
A ++ A ++S G+ + V++K D + W +G+V + L Y +
Sbjct: 22 AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRS 81
Query: 133 SATPQ 137
+
Sbjct: 82 HSDAS 86
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 56.6 bits (137), Expect = 4e-12
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 72 VYALYDYEANNT-------DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
+ A DY+ + L+ + G+ ++V D+ +++ +L G VP +
Sbjct: 10 MIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQ--GFYYGELGGHRGLVPAH 65
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 56.4 bits (136), Expect = 5e-12
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
+ Y A DELS G + V+ + WW N + G+ P N
Sbjct: 6 VXFAYVAEREDELSLVXGSRVTVMEXCSDG---WWRGSYNGQIGWFPSN 51
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 60.6 bits (146), Expect = 5e-12
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
V + + +L F+ GE + +L K +++ WW ++ G VP N
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQD---WWEARNALGTTGLVPAN 198
Score = 48.7 bits (115), Expect = 8e-08
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 76 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
A + +L K G+ ++V +K + ++L+ + G VP
Sbjct: 256 RVPNAYDPTQLRVKKGQTVLVTQKMSNG---MYKAELDGQIGSVPHT 299
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 56.7 bits (137), Expect = 5e-12
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL----NNKEGYVPRN 122
++ DYE + + F+ G + VL + WW+ ++ +G+VP N
Sbjct: 15 SIADYEGDE-ETAGFQEGVSMEVLERNPN---GWWYCQILDGVKPFKGWVPSN 63
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 56.1 bits (136), Expect = 5e-12
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 74 ALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
A YD+ + EL K G+ I + R+ W KL +KEG+VP
Sbjct: 5 AAYDFPGSGSPSELPLKKGDVIYITREEPSG---WSLGKLLDGSKEGWVPTA 53
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 55.4 bits (134), Expect = 1e-11
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 72 VYALYDYEAN-NTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
+YD+ A +EL+ GE I V W ++G VP +
Sbjct: 12 ARVMYDFAAEPGNNELTVTEGEIITVTNPNVG---GGWLEGKNNKGEQGLVPTD 62
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 58.6 bits (142), Expect = 2e-11
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
ALYD+ A+ + LS GE + VL + EW ++ N +G+VP N
Sbjct: 46 FVALYDFVASGDNTLSITKGEKLRVLGY--NHNGEWCEAQTKNGQGWVPSN 94
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 54.6 bits (132), Expect = 2e-11
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 72 VYALYDYE--ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
A+ A + L+ + G+ + V R W ++N ++G P
Sbjct: 4 AKAIQKRVPCAYDKTALALEVGDIVKVTRMNING---QWEGEVNGRKGLFPFT 53
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 54.7 bits (132), Expect = 2e-11
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
V+ + +TD L K G+ I ++ K W LNNK G
Sbjct: 14 VHTDFTPSPYDTDSLKLKKGDIIDIISKPPMG---TWMGLLNNKVGTFKFI 61
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 58.5 bits (142), Expect = 3e-11
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
A Y++ +L F G+ + ++ + W+ +EG +P N
Sbjct: 16 AKYNFHGTAEQDLPFCKGDVLTIV---AVTKDPNWYKAKNKVGREGIIPAN 63
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 54.3 bits (131), Expect = 4e-11
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 72 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
V ++ + A NN LSF G+ + +L +++ W + + G+ P +
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKD--GWLYGEHDTTKARGWFPSS 61
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 54.2 bits (131), Expect = 4e-11
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
A++ + + DEL + + ++V + ++ W+ + G P
Sbjct: 9 HRAIFRFVPRHEDELELEVDDPLLVELQAEDY---WYEAYNMRTGARGVFPAY 58
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 53.5 bits (129), Expect = 7e-11
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
V + A DE++ + + ++VL++ D W + + G+ P +
Sbjct: 20 VEITKAFFAKQADEVTLQQADVVLVLQQEDG-----WLYGERLRDGETGWFPED 68
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 52.7 bits (127), Expect = 1e-10
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 72 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
V ++ + A +N LSF G+ I +L +++ W + + + G+ P +
Sbjct: 9 VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKD--GWLYGEHDVSKARGWFPSS 60
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 53.5 bits (128), Expect = 2e-10
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW--------WSKLNNKEGYVPRNL 123
AL DY A + L+ G+ + V K R +W + L + GY P ++
Sbjct: 25 AVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSI 84
Query: 124 L 124
+
Sbjct: 85 V 85
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 56.1 bits (134), Expect = 2e-10
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
V A + L+ + GE + V + W + N K G+ P + R+
Sbjct: 242 VIQKRVPNAYDKTALALEVGELVKVTKINVSG---QWEGECNGKRGHFPFT----HVRLL 294
Query: 132 PSATPQ 137
P+
Sbjct: 295 DQQNPE 300
Score = 47.3 bits (111), Expect = 2e-07
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 76 YDYEANNTDELSFKTGECIIVLRKGDENEREWWW-SKLNNKEGYVPRNLLGLYPRVQPSA 134
+D+ N+ ++L FK G+ + + K +E WW K G +P + Y S
Sbjct: 141 FDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSEGKRGMIPVPYVEKYRPASASV 197
Query: 135 TPQ 137
+
Sbjct: 198 SAL 200
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 55.9 bits (135), Expect = 2e-10
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Query: 65 GILNNGA---VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYV 119
G + +G V ALYDYEA + ++LSF+ G+ ++VL E EWW S KEGY+
Sbjct: 1 GAMGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYI 56
Query: 120 PRN 122
P N
Sbjct: 57 PSN 59
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 55.3 bits (132), Expect = 3e-10
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 130
V AL+D+ N+ ++L FK G+ + + K +E WW ++ K G +P + Y
Sbjct: 139 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSEGKRGMIPVPYVEKYRPA 195
Query: 131 QPSATPQ 137
S +
Sbjct: 196 SASVSAL 202
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 55.7 bits (134), Expect = 3e-10
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
AL+D+ + EL FK G+ I V+ D REWWW ++ + EG+ P + + L
Sbjct: 33 AEALWDHVTMDDQELGFKAGDVIEVM---DATNREWWWGRVADGEGWFPASFVRLRVNQD 89
Query: 132 PS 133
Sbjct: 90 EP 91
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 51.9 bits (125), Expect = 3e-10
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 72 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
V A++ + A +N+ LSFK G+ I +L + W S+ G+ P +
Sbjct: 10 VKAIFSHAAGDNSTLLSFKEGDLITLLVPEAR---DGWHYGESEKTKMRGWFPFS 61
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 51.4 bits (124), Expect = 3e-10
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
A++ + + DEL + + ++V + ++ W+ + G P
Sbjct: 6 HRAIFRFVPRHEDELELEVDDPLLVELQAEDY----WYEAYNMRTGARGVFPAY 55
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 51.2 bits (123), Expect = 4e-10
Identities = 10/39 (25%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 84 DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
E++ K G+ + +L +++ WW ++N+++G+VP
Sbjct: 4 REVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA 39
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 51.4 bits (123), Expect = 6e-10
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 72 VYALYDYE-ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
V AL D+ ++ L+ + G+ I VL + + W ++ + R +G +P
Sbjct: 21 VRALKDFWNLHDPTALNVRAGDVITVLEQHPDG---RWKGHIHESQRGTDR--IGYFP 73
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 54.2 bits (129), Expect = 9e-10
Identities = 12/121 (9%), Positives = 31/121 (25%), Gaps = 5/121 (4%)
Query: 2 PKSHIQKIHFTCTTLAVCSLSFVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQ 61
P +++K+ + + + Y + + +
Sbjct: 174 PVPYVEKLVRSSPHGKHGNRNSNSYG--IPEPAHAYAQPQTTTPLPAVSGSPGAAITPLP 231
Query: 62 EKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 121
A + L+ + G+ + V R W ++N ++G P
Sbjct: 232 STQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNING---QWEGEVNGRKGLFPF 288
Query: 122 N 122
Sbjct: 289 T 289
Score = 48.5 bits (114), Expect = 8e-08
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 73 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRN 122
LYD+ N+ ++L FK GE ++++ K +E WW ++ + + G +P
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVIIEKPEEQ---WWSARNKDGRVGMIPVP 176
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 54.0 bits (128), Expect = 1e-09
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRN 122
ALYDYE DELSFK G+ + + DE W +L+N + G P N
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQ--GWCKGRLDNGQVGLYPAN 480
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 51.6 bits (123), Expect = 1e-09
Identities = 8/49 (16%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
A+Y+++ + +LS + G+ + + + + K +G P++
Sbjct: 64 AIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKS 111
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 52.4 bits (124), Expect = 2e-09
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENERE--WWW----------SKLNNKEGYV 119
V A +DY A +TDEL K G+ ++V+ + E++ W KL G
Sbjct: 145 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVF 204
Query: 120 PRN 122
P N
Sbjct: 205 PEN 207
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 52.5 bits (126), Expect = 4e-09
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
ALYDYE+ +LSFK GE + ++ + +WW S + GY+P N
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEG---DWWLAHSLSTGQTGYIPSN 54
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 51.3 bits (123), Expect = 7e-09
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
V +YDY A N DEL+F G+ I VL K D +WW +++ + G P N + L +
Sbjct: 5 VIGMYDYTAQNDDELAFSKGQIINVLNKEDP---DWWKGEVSGQVGLFPSNYVKLTTDMD 61
Query: 132 PSATPQ 137
PS
Sbjct: 62 PSQQWC 67
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 48.1 bits (114), Expect = 2e-08
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 14/63 (22%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDEN-----------EREWWW---SKLNNKEGYV 119
ALY + ++L G+ ++V R + + W ++ + G
Sbjct: 16 ALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDF 75
Query: 120 PRN 122
P
Sbjct: 76 PGT 78
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 49.5 bits (118), Expect = 4e-08
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
ALYDYE+ +LSFK GE + ++ + +WW S + GY+P N
Sbjct: 88 FVALYDYESRTETDLSFKKGERLQIVNNTEG---DWWLAHSLSTGQTGYIPSN 137
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Length = 82
Score = 46.5 bits (110), Expect = 5e-08
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN----KEGYVPRNLLGL 126
L D+ A ++ ELS + G+ + +L + W + +EG VP + L +
Sbjct: 20 TVVLQDFSAAHSSELSIQVGQTVELLER-PSERPGWCLVRTTERSPPQEGLVPSSTLCI 77
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 46.2 bits (109), Expect = 3e-07
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
V AL+ YE ++ +L F+ GE + +L E EWW S +EG++P N
Sbjct: 15 VIALHSYEPSHDGDLGFEKGEQLRIL----EQSGEWWKAQSLTTGQEGFIPFN 63
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 45.5 bits (107), Expect = 6e-07
Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLLGLYPRV 130
A+Y+++ + +LS + G+ + + +W+ L +G P++ + +
Sbjct: 22 AIYNFQGSGAPQLSLQIGDVVRIQETCG----DWYRGYLIKHKMLQGIFPKSFIHIKEVT 77
Query: 131 QPSATPQ 137
Sbjct: 78 VEKRRNT 84
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 41.9 bits (98), Expect = 2e-06
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 73 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY 127
Y + L G+ + + + E E WW + N+ G+ P N + Y
Sbjct: 22 YGIPPPPGAFGGFLRLNPGDIVELTKA--EAEHNWWEGRNTATNEVGWFPCNRVHPY 76
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 38.9 bits (90), Expect = 4e-05
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL 124
A D + +ELSFK GE I ++R D N W + GY+ +
Sbjct: 33 ACCDVK-GGKNELSFKQGEQIEIIRITD-NPEGKWLGRTARGSYGYIKTTAV 82
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 38.4 bits (89), Expect = 4e-05
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 72 VYALYDYEAN------NTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNL 123
+ +Y L G+ + + + E E WW + N+ G+ P N
Sbjct: 7 MEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKA--EAEHNWWEGRNTATNEVGWFPCNR 64
Query: 124 LGLY 127
+ Y
Sbjct: 65 VHPY 68
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 38.1 bits (88), Expect = 7e-05
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 74 ALYDYEANNTDELSFKTGECIIVLR---------KGDENERE---WW--WSKLNNKEGYV 119
ALYDY+ +++ G+ + V + G E E W +++ + G
Sbjct: 10 ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 69
Query: 120 PRNLLGLYPRVQPS 133
P + R + S
Sbjct: 70 PGTYVEYIGRKKIS 83
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 39.8 bits (92), Expect = 9e-05
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 72 VYALYDYEANNTDELSFKTGECIIVLRKGDEN------EREWWWSKLNNKEG 117
+ ++ E + L F G+ VL W + ++
Sbjct: 7 IRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDL 58
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 35.3 bits (80), Expect = 0.003
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 32 THSD--HETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFK 89
+ + E+ + +Y + + ++ + ++YE + LSF
Sbjct: 59 IREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFN 118
Query: 90 TGECIIVLRKGDENEREWWWSKLNNKEG 117
GE V+ + W + K
Sbjct: 119 KGEVFRVVDTLYNGKLGSWLAIRIGKNH 146
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 74
Score = 32.9 bits (74), Expect = 0.005
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 75 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWW------SKLNNKEGYVPRNLLGLYP 128
+ DY A +E+ GE + VL N++ EG+VP ++L P
Sbjct: 13 IKDYYALKENEICVSQGEVVQVLA---VNQQNMCLVYQPASDHSPAAEGWVPGSILA--P 67
Query: 129 RVQPSA 134
PS+
Sbjct: 68 FSGPSS 73
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 33.6 bits (77), Expect = 0.013
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 72 VYALYDYEANNTD-----ELSFKTGECIIVLRKGDENEREWW 108
+ AL+DY+ LSF+ G+ + V+ GDE WW
Sbjct: 4 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEE---WW 42
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 32.5 bits (73), Expect = 0.029
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 76 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG 117
++YE + LSF GE V+ + W + K
Sbjct: 113 FEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNH 154
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 31.3 bits (71), Expect = 0.064
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 72 VYALYDYEANNTDE-----LSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
V AL+DY+ N D L FK G+ + V D+ WW ++ + + +G+
Sbjct: 8 VRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDE---WWQARRVLGDNEDEQ--IGI 62
Query: 127 YP 128
P
Sbjct: 63 VP 64
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 30.6 bits (68), Expect = 0.15
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 15/61 (24%)
Query: 71 AVYALYDYEANNTDE-------LSFKTGECIIVLRKGDENEREWWWS----KLNNKEGYV 119
AV Y A + D+ +SF+ + + V K + + WW K + G++
Sbjct: 40 AVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNND----WWIGRLVKEGCEIGFI 95
Query: 120 P 120
P
Sbjct: 96 P 96
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.45A
{Rhodopseudomonas palustris}
Length = 392
Score = 29.6 bits (67), Expect = 0.31
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 24/57 (42%)
Query: 28 IFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI------LNN---GAVYAL 75
+ A ++ A+ E VQ LG+ +N A + L
Sbjct: 143 LCACSNMQRAYPAMAIE---------------VQNALGLGGFAFDMNVACSSATFGL 184
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 26.7 bits (60), Expect = 2.3
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 26/59 (44%)
Query: 28 IFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGA-----------VYAL 75
I AT+ D + C +Q KLGI N+GA YA+
Sbjct: 91 IVATSTPDFVFPSTACL---------------LQNKLGIRNHGAAFDVQAVCSGFAYAV 134
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 26.2 bits (58), Expect = 3.0
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 91 GECIIVLRKGDENEREWWWSKLNN 114
GE L+K N+R+ + L
Sbjct: 117 GETRFSLKKLKANQRKNFNICLER 140
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 26.3 bits (59), Expect = 3.7
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 25/58 (43%)
Query: 28 IFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGA----------VYAL 75
+ ATT + H + C+ +Q LGI A YAL
Sbjct: 77 VVATTSATHAFPSAACQ---------------IQSMLGIKGCPAFDVAAACAGFTYAL 119
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 26.4 bits (59), Expect = 3.7
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 25/58 (43%)
Query: 28 IFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGA----------VYAL 75
+ T DH + C +Q LG+ + +Y L
Sbjct: 100 LVNTLSPDHHDPSQACL---------------IQPLLGLRHIPVLDIRAQASGLLYGL 142
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 26.3 bits (59), Expect = 4.1
Identities = 11/58 (18%), Positives = 14/58 (24%), Gaps = 25/58 (43%)
Query: 28 IFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGA----------VYAL 75
I AT + C VQ +L A +YAL
Sbjct: 76 ILATLTPQKRFPSTACL---------------VQAQLKAKGVYAFDISAACSGFIYAL 118
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 26.3 bits (59), Expect = 4.1
Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 25/58 (43%)
Query: 28 IFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGA----------VYAL 75
I ATT H + C+ VQ L I + + VYAL
Sbjct: 84 IVATTSHSHAYPSAACQ---------------VQGLLNIDDAISFDLAAACTGFVYAL 126
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 26.0 bits (58), Expect = 5.2
Identities = 11/59 (18%), Positives = 15/59 (25%), Gaps = 26/59 (44%)
Query: 28 IFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGA-----------VYAL 75
I T D+ C +Q +LGI + VY L
Sbjct: 106 ILCTQAPDYVLPTSACM---------------LQHRLGIPTHAGALDVNLGCSGYVYGL 149
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 25.4 bits (55), Expect = 6.7
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 85 ELSFKTGECIIVLRKGDEN---EREWWWSKLNNKEGYVPRNLLGLYP 128
+L + ++ L + EW K ++ Y P
Sbjct: 143 QLRKIRDQYLVWLTQKGARQRKINEWLGIKNETEDQYSLMEDEDALP 189
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 25.5 bits (57), Expect = 7.5
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 25/58 (43%)
Query: 28 IFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGA----------VYAL 75
I AT D V +QE+LG + +Y++
Sbjct: 77 IVATATGDMPFPTVANM---------------LQERLGTGKVASMDQLAACSGFMYSM 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.422
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,032,888
Number of extensions: 106587
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 221
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.7 bits)