Query psy7686
Match_columns 243
No_of_seqs 211 out of 445
Neff 5.0
Searched_HMMs 29240
Date Sat Aug 17 00:48:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aze_B Transcription factor E2 100.0 1.6E-37 5.6E-42 246.1 10.5 102 86-192 3-106 (106)
2 1cf7_A Protein (transcription 100.0 2.5E-30 8.5E-35 193.9 7.3 74 5-78 3-76 (76)
3 1cf7_B Protein (transcription 99.5 3.7E-14 1.3E-18 110.1 5.4 68 8-79 6-92 (95)
4 2xvc_A ESCRT-III, SSO0910; cel 95.1 0.036 1.2E-06 39.2 5.1 44 19-64 13-56 (59)
5 1oyi_A Double-stranded RNA-bin 93.6 0.14 4.9E-06 38.2 5.8 64 11-78 12-75 (82)
6 1qgp_A Protein (double strande 93.0 0.16 5.5E-06 36.8 5.2 56 19-75 17-73 (77)
7 2heo_A Z-DNA binding protein 1 92.5 0.21 7.3E-06 34.9 5.1 52 17-70 11-62 (67)
8 3r0a_A Putative transcriptiona 92.3 0.4 1.4E-05 37.0 7.0 47 19-66 29-75 (123)
9 1r7j_A Conserved hypothetical 91.9 0.62 2.1E-05 34.8 7.4 83 16-111 8-90 (95)
10 1qbj_A Protein (double-strande 91.7 0.27 9.2E-06 36.2 5.1 59 18-77 12-71 (81)
11 3eco_A MEPR; mutlidrug efflux 89.8 4.6 0.00016 30.2 10.8 46 20-66 35-80 (139)
12 2oqg_A Possible transcriptiona 88.2 4.7 0.00016 29.4 9.6 45 20-68 25-69 (114)
13 2htj_A P fimbrial regulatory p 88.1 1 3.6E-05 31.8 5.6 43 20-65 4-46 (81)
14 4b8x_A SCO5413, possible MARR- 87.6 0.39 1.3E-05 37.6 3.3 45 22-67 41-85 (147)
15 3jw4_A Transcriptional regulat 87.1 4.3 0.00015 30.8 9.1 46 21-67 46-91 (148)
16 2kko_A Possible transcriptiona 86.3 1 3.6E-05 33.6 5.0 46 21-70 30-75 (108)
17 3cuo_A Uncharacterized HTH-typ 85.5 1.3 4.6E-05 31.5 5.0 45 21-68 29-73 (99)
18 2a61_A Transcriptional regulat 85.4 7.8 0.00027 28.9 9.6 43 21-66 38-80 (145)
19 1ku9_A Hypothetical protein MJ 85.2 6.6 0.00023 29.2 9.1 45 20-66 30-74 (152)
20 2y75_A HTH-type transcriptiona 85.1 1.6 5.3E-05 33.4 5.5 46 20-66 13-59 (129)
21 3bro_A Transcriptional regulat 85.0 1.1 3.9E-05 33.5 4.7 46 21-67 39-84 (141)
22 3mq0_A Transcriptional repress 84.5 2 6.8E-05 37.5 6.6 64 9-75 21-86 (275)
23 3qph_A TRMB, A global transcri 84.3 0.26 8.8E-06 45.0 0.8 52 21-76 24-75 (342)
24 1on2_A Transcriptional regulat 83.9 2.5 8.6E-05 32.3 6.3 44 21-67 13-56 (142)
25 1y0u_A Arsenical resistance op 83.6 1.6 5.6E-05 31.6 4.8 47 21-73 36-82 (96)
26 2frh_A SARA, staphylococcal ac 82.9 1.9 6.6E-05 32.7 5.2 45 21-66 42-86 (127)
27 2fu4_A Ferric uptake regulatio 82.9 1.1 3.6E-05 31.7 3.4 46 21-67 22-72 (83)
28 2d1h_A ST1889, 109AA long hypo 82.3 1.1 3.9E-05 32.0 3.5 38 30-68 34-71 (109)
29 3u2r_A Regulatory protein MARR 82.2 7.3 0.00025 30.3 8.5 46 21-67 51-96 (168)
30 1sfx_A Conserved hypothetical 81.8 1.4 4.9E-05 31.3 3.9 45 20-67 24-68 (109)
31 1ub9_A Hypothetical protein PH 81.8 6.7 0.00023 27.6 7.5 44 21-67 21-64 (100)
32 2gxg_A 146AA long hypothetical 81.5 9.2 0.00032 28.5 8.6 36 30-66 48-83 (146)
33 3deu_A Transcriptional regulat 81.2 11 0.00036 29.6 9.2 37 30-67 66-102 (166)
34 3nrv_A Putative transcriptiona 80.7 14 0.00049 27.6 9.5 43 21-66 45-87 (148)
35 3rkx_A Biotin-[acetyl-COA-carb 80.4 3.5 0.00012 37.2 6.7 58 19-77 6-64 (323)
36 4ham_A LMO2241 protein; struct 80.4 12 0.00041 28.8 9.1 55 12-67 13-72 (134)
37 1sfu_A 34L protein; protein/Z- 80.3 2.7 9.2E-05 30.9 4.8 62 11-75 10-71 (75)
38 2o0y_A Transcriptional regulat 80.0 2.1 7.2E-05 36.9 4.9 41 30-71 36-76 (260)
39 2lkp_A Transcriptional regulat 79.5 5.6 0.00019 29.5 6.7 36 31-67 44-79 (119)
40 3jth_A Transcription activator 79.5 2.7 9.3E-05 30.3 4.8 37 31-68 35-71 (98)
41 2hr3_A Probable transcriptiona 79.5 11 0.00037 28.3 8.4 44 21-66 40-83 (147)
42 1r1u_A CZRA, repressor protein 79.2 2.2 7.4E-05 31.6 4.2 44 21-68 31-74 (106)
43 3f6o_A Probable transcriptiona 78.7 6.3 0.00022 29.6 6.8 46 20-69 22-67 (118)
44 2fa5_A Transcriptional regulat 78.5 17 0.00059 27.6 9.5 37 30-67 61-97 (162)
45 2bv6_A MGRA, HTH-type transcri 78.3 2.1 7.1E-05 32.2 4.0 37 30-67 49-85 (142)
46 2cfx_A HTH-type transcriptiona 77.8 2.7 9.2E-05 32.7 4.6 47 17-66 6-52 (144)
47 2fbi_A Probable transcriptiona 77.6 16 0.00054 27.0 8.8 36 31-67 49-84 (142)
48 2pg4_A Uncharacterized protein 77.3 2.4 8.2E-05 30.5 3.9 52 11-64 8-62 (95)
49 2eth_A Transcriptional regulat 77.1 6.9 0.00023 29.9 6.7 43 21-66 49-91 (154)
50 1xn7_A Hypothetical protein YH 76.4 3.3 0.00011 30.1 4.4 45 19-66 5-49 (78)
51 2k02_A Ferrous iron transport 76.3 3.7 0.00013 30.7 4.7 46 19-67 5-50 (87)
52 2hzt_A Putative HTH-type trans 76.3 3.2 0.00011 30.8 4.4 37 30-67 25-62 (107)
53 3s2w_A Transcriptional regulat 76.0 24 0.00082 26.9 10.6 37 30-67 62-98 (159)
54 1u2w_A CADC repressor, cadmium 75.9 3.4 0.00012 31.4 4.6 45 21-68 47-91 (122)
55 2dbb_A Putative HTH-type trans 75.5 3 0.0001 32.5 4.2 50 14-66 7-56 (151)
56 3pqk_A Biofilm growth-associat 75.5 4 0.00014 29.6 4.7 44 21-68 28-71 (102)
57 3nqo_A MARR-family transcripti 75.3 2.7 9.2E-05 34.0 4.1 45 21-66 46-90 (189)
58 2p5v_A Transcriptional regulat 75.2 3.2 0.00011 32.9 4.4 50 14-66 8-57 (162)
59 2x4h_A Hypothetical protein SS 75.0 3.9 0.00013 31.0 4.7 38 29-67 28-65 (139)
60 1tbx_A ORF F-93, hypothetical 74.7 14 0.00048 26.3 7.5 37 30-67 20-60 (99)
61 2rdp_A Putative transcriptiona 74.1 14 0.00048 27.7 7.7 35 31-66 55-89 (150)
62 2aze_A Transcription factor DP 74.1 12 0.00042 30.9 7.7 27 148-177 66-92 (155)
63 2p4w_A Transcriptional regulat 74.0 28 0.00095 29.1 10.2 43 21-67 20-62 (202)
64 1j5y_A Transcriptional regulat 73.7 4.4 0.00015 33.1 5.0 53 20-75 25-78 (187)
65 1i1g_A Transcriptional regulat 73.6 3.5 0.00012 31.4 4.2 45 19-66 7-51 (141)
66 3fm5_A Transcriptional regulat 73.3 3.3 0.00011 31.6 3.9 42 23-66 46-87 (150)
67 2cg4_A Regulatory protein ASNC 73.2 3.5 0.00012 32.2 4.1 49 15-66 7-55 (152)
68 2w25_A Probable transcriptiona 73.1 3.9 0.00013 31.8 4.4 50 14-66 5-54 (150)
69 3e6m_A MARR family transcripti 72.9 15 0.00052 28.2 7.8 37 30-67 65-101 (161)
70 1p6r_A Penicillinase repressor 72.9 4.7 0.00016 28.2 4.4 47 19-67 12-61 (82)
71 3oop_A LIN2960 protein; protei 72.9 3.5 0.00012 31.1 3.9 43 21-66 42-84 (143)
72 2jt1_A PEFI protein; solution 72.5 4.9 0.00017 29.1 4.4 44 30-74 22-68 (77)
73 2fsw_A PG_0823 protein; alpha- 72.0 5.4 0.00019 29.4 4.7 37 30-67 36-73 (107)
74 2cyy_A Putative HTH-type trans 71.9 3.7 0.00013 32.0 4.0 50 14-66 5-54 (151)
75 1r1t_A Transcriptional repress 71.4 5.2 0.00018 30.6 4.7 36 31-67 58-93 (122)
76 3f3x_A Transcriptional regulat 71.1 4.3 0.00015 30.6 4.1 43 21-67 42-84 (144)
77 2pn6_A ST1022, 150AA long hypo 70.7 4 0.00014 31.6 3.9 45 19-66 6-50 (150)
78 2xrn_A HTH-type transcriptiona 70.7 29 0.001 29.2 9.7 46 21-68 11-56 (241)
79 2qww_A Transcriptional regulat 70.7 5.8 0.0002 30.1 4.8 42 21-65 46-87 (154)
80 3kp7_A Transcriptional regulat 70.3 16 0.00055 27.6 7.3 37 29-66 48-84 (151)
81 1z7u_A Hypothetical protein EF 70.3 4.7 0.00016 30.1 4.1 36 31-67 34-70 (112)
82 3pfi_A Holliday junction ATP-d 70.2 4.7 0.00016 34.8 4.6 55 14-69 261-316 (338)
83 3bja_A Transcriptional regulat 69.8 5.3 0.00018 29.6 4.3 43 21-66 38-80 (139)
84 3hsr_A HTH-type transcriptiona 69.6 4.5 0.00015 30.6 3.9 37 29-66 47-83 (140)
85 3r4k_A Transcriptional regulat 69.5 4.1 0.00014 35.1 4.1 45 30-76 19-64 (260)
86 2pex_A Transcriptional regulat 69.5 14 0.00049 27.9 6.9 37 30-67 59-95 (153)
87 3g3z_A NMB1585, transcriptiona 69.3 33 0.0011 25.6 11.2 42 22-66 37-78 (145)
88 3f6v_A Possible transcriptiona 69.2 5.7 0.00019 31.8 4.6 49 20-72 62-110 (151)
89 3bpv_A Transcriptional regulat 69.2 5.4 0.00019 29.5 4.2 43 21-66 34-76 (138)
90 3cdh_A Transcriptional regulat 69.2 6.8 0.00023 29.8 4.9 36 30-66 55-90 (155)
91 1fxk_C Protein (prefoldin); ar 68.9 16 0.00055 28.2 7.1 54 70-123 72-129 (133)
92 2nnn_A Probable transcriptiona 68.8 4.4 0.00015 30.0 3.7 35 31-66 51-85 (140)
93 1mkm_A ICLR transcriptional re 68.8 8.1 0.00028 32.8 5.7 50 21-72 13-62 (249)
94 1xmk_A Double-stranded RNA-spe 68.7 12 0.00042 27.2 5.9 56 16-74 11-67 (79)
95 4hbl_A Transcriptional regulat 68.6 6.1 0.00021 30.1 4.5 42 22-66 47-88 (149)
96 2jsc_A Transcriptional regulat 68.5 3.9 0.00013 30.9 3.3 44 20-67 25-68 (118)
97 3b73_A PHIH1 repressor-like pr 68.4 6 0.0002 30.5 4.4 53 14-69 11-65 (111)
98 2ia0_A Putative HTH-type trans 68.3 5.3 0.00018 32.3 4.3 50 14-66 15-64 (171)
99 2ip2_A Probable phenazine-spec 67.6 4.2 0.00014 35.3 3.8 42 31-73 40-81 (334)
100 3boq_A Transcriptional regulat 67.5 6.1 0.00021 30.2 4.3 44 21-66 52-95 (160)
101 2wte_A CSA3; antiviral protein 67.4 6.3 0.00022 34.1 4.8 49 17-68 153-201 (244)
102 3cjn_A Transcriptional regulat 67.2 6.9 0.00023 30.0 4.6 36 30-66 64-99 (162)
103 1wi9_A Protein C20ORF116 homol 67.2 9.2 0.00031 27.9 4.8 55 18-75 9-65 (72)
104 3ech_A MEXR, multidrug resista 67.1 5.6 0.00019 29.9 4.0 43 21-66 42-84 (142)
105 2fbh_A Transcriptional regulat 67.1 5.6 0.00019 29.7 4.0 38 29-67 49-86 (146)
106 1yyv_A Putative transcriptiona 66.7 5.8 0.0002 30.8 4.1 53 11-67 26-83 (131)
107 1a93_B MAX protein, coiled coi 66.5 8.2 0.00028 24.3 3.9 27 89-115 7-33 (34)
108 3tgn_A ADC operon repressor AD 66.2 5.4 0.00019 29.9 3.7 44 20-67 42-85 (146)
109 1ylf_A RRF2 family protein; st 66.2 8.2 0.00028 30.4 4.9 46 21-67 19-64 (149)
110 3bdd_A Regulatory protein MARR 65.8 5.9 0.0002 29.4 3.8 36 31-67 44-79 (142)
111 3bj6_A Transcriptional regulat 65.6 7.7 0.00026 29.3 4.5 43 21-66 45-87 (152)
112 1s3j_A YUSO protein; structura 65.4 40 0.0014 25.2 10.7 44 21-67 42-85 (155)
113 2zqm_A Prefoldin beta subunit 65.4 37 0.0012 25.2 8.3 75 46-124 35-112 (117)
114 3neu_A LIN1836 protein; struct 65.3 11 0.00038 28.8 5.4 56 12-68 12-72 (125)
115 1z91_A Organic hydroperoxide r 64.8 12 0.00043 27.9 5.6 36 31-67 53-88 (147)
116 1fxk_A Prefoldin; archaeal pro 64.5 28 0.00096 25.5 7.4 73 46-122 30-105 (107)
117 3i53_A O-methyltransferase; CO 64.4 4.5 0.00015 35.2 3.3 50 21-74 30-79 (332)
118 2e1c_A Putative HTH-type trans 64.1 6.8 0.00023 31.7 4.2 50 14-66 25-74 (171)
119 1v4r_A Transcriptional repress 64.0 6 0.0002 28.9 3.5 54 14-68 13-70 (102)
120 2ek5_A Predicted transcription 63.9 15 0.00052 28.4 6.0 49 19-68 11-63 (129)
121 1m1j_C Fibrinogen gamma chain; 63.7 5.5 0.00019 37.6 3.9 23 169-194 165-187 (409)
122 2h09_A Transcriptional regulat 63.4 12 0.00041 28.8 5.3 37 31-68 53-89 (155)
123 3gwz_A MMCR; methyltransferase 62.7 6 0.0002 35.3 3.9 44 29-73 68-112 (369)
124 2g7u_A Transcriptional regulat 62.7 6.6 0.00023 33.6 4.0 41 30-72 27-67 (257)
125 2ia2_A Putative transcriptiona 62.2 7.7 0.00026 33.4 4.3 45 30-77 34-78 (265)
126 3mkl_A HTH-type transcriptiona 62.2 9.9 0.00034 28.4 4.5 39 17-56 8-46 (120)
127 3k69_A Putative transcription 61.8 9.3 0.00032 30.9 4.6 46 20-66 16-61 (162)
128 2dk5_A DNA-directed RNA polyme 61.4 11 0.00037 27.9 4.5 47 19-66 23-69 (91)
129 3i4p_A Transcriptional regulat 61.1 8.2 0.00028 30.6 4.1 46 18-66 5-50 (162)
130 3lst_A CALO1 methyltransferase 61.0 6 0.00021 34.8 3.5 43 29-73 52-94 (348)
131 3by6_A Predicted transcription 60.7 19 0.00065 27.6 6.0 51 18-69 17-71 (126)
132 2r3s_A Uncharacterized protein 60.7 6 0.0002 34.1 3.4 42 30-73 37-78 (335)
133 1q1h_A TFE, transcription fact 60.5 7.7 0.00026 28.4 3.5 37 29-66 30-66 (110)
134 3oou_A LIN2118 protein; protei 60.0 9.3 0.00032 27.9 3.9 43 17-60 6-48 (108)
135 2f2e_A PA1607; transcription f 59.8 5.5 0.00019 31.4 2.8 56 8-67 12-71 (146)
136 1qzz_A RDMB, aclacinomycin-10- 59.8 6.6 0.00022 34.5 3.5 49 21-73 41-91 (374)
137 3tqn_A Transcriptional regulat 59.3 20 0.00068 26.8 5.8 51 17-68 14-68 (113)
138 2qlz_A Transcription factor PF 58.8 27 0.00094 30.0 7.3 42 20-65 16-57 (232)
139 1okr_A MECI, methicillin resis 58.7 10 0.00035 27.9 4.0 46 19-67 13-62 (123)
140 3oio_A Transcriptional regulat 58.5 13 0.00044 27.3 4.5 43 17-60 8-50 (113)
141 2vn2_A DNAD, chromosome replic 57.9 11 0.00037 29.1 4.1 35 33-68 52-86 (128)
142 1hsj_A Fusion protein consisti 57.9 9.9 0.00034 34.7 4.5 45 21-66 409-453 (487)
143 1lj9_A Transcriptional regulat 57.8 54 0.0018 24.1 10.9 43 21-66 34-76 (144)
144 4a5n_A Uncharacterized HTH-typ 57.3 12 0.00043 29.3 4.5 37 30-67 37-74 (131)
145 2nyx_A Probable transcriptiona 57.0 6.9 0.00024 30.6 2.9 35 31-66 58-92 (168)
146 1jgs_A Multiple antibiotic res 56.3 4.4 0.00015 30.1 1.6 35 31-66 47-81 (138)
147 2fbk_A Transcriptional regulat 56.1 10 0.00035 30.0 3.8 35 32-67 86-120 (181)
148 3k0l_A Repressor protein; heli 55.7 8.5 0.00029 29.7 3.2 36 30-66 58-93 (162)
149 3mn2_A Probable ARAC family tr 55.4 12 0.00042 27.1 3.9 43 17-60 3-45 (108)
150 1p4x_A Staphylococcal accessor 55.3 12 0.00042 32.2 4.5 44 22-66 164-207 (250)
151 1tw3_A COMT, carminomycin 4-O- 53.9 10 0.00034 33.2 3.7 44 30-74 50-93 (360)
152 3df8_A Possible HXLR family tr 53.6 10 0.00035 28.4 3.2 54 11-68 18-78 (111)
153 3t8r_A Staphylococcus aureus C 53.6 25 0.00086 27.5 5.7 46 20-66 15-61 (143)
154 2qvo_A Uncharacterized protein 53.1 11 0.00038 27.0 3.3 35 29-64 27-61 (95)
155 4dzo_A Mitotic spindle assembl 52.7 50 0.0017 25.9 7.2 36 89-124 4-39 (123)
156 2v79_A DNA replication protein 52.4 12 0.0004 29.6 3.6 36 30-66 49-84 (135)
157 3k2z_A LEXA repressor; winged 51.4 11 0.00037 30.9 3.3 38 29-67 21-58 (196)
158 3ihu_A Transcriptional regulat 50.9 43 0.0015 27.4 7.0 56 11-67 14-73 (222)
159 2b0l_A GTP-sensing transcripti 50.4 13 0.00043 27.9 3.3 39 28-67 38-77 (102)
160 3bvo_A CO-chaperone protein HS 49.9 95 0.0032 26.1 9.1 100 10-124 55-176 (207)
161 1bl0_A Protein (multiple antib 49.8 15 0.00051 27.7 3.7 44 16-60 11-54 (129)
162 2o03_A Probable zinc uptake re 49.7 26 0.00089 26.8 5.1 45 21-67 16-65 (131)
163 3lsg_A Two-component response 49.2 18 0.00062 26.0 3.9 43 17-60 3-46 (103)
164 1x19_A CRTF-related protein; m 49.1 11 0.00036 33.2 3.1 42 30-73 62-103 (359)
165 1umq_A Photosynthetic apparatu 48.4 33 0.0011 24.9 5.2 43 10-55 34-76 (81)
166 3dp7_A SAM-dependent methyltra 48.3 13 0.00046 32.9 3.6 36 30-66 48-83 (363)
167 2k9s_A Arabinose operon regula 48.2 24 0.00083 25.5 4.5 42 17-59 4-46 (107)
168 3gpv_A Transcriptional regulat 47.7 1E+02 0.0034 24.2 8.5 37 32-75 16-56 (148)
169 2k4b_A Transcriptional regulat 47.5 20 0.00067 26.8 3.9 45 21-67 40-87 (99)
170 3sxy_A Transcriptional regulat 47.1 61 0.0021 26.4 7.3 40 28-68 31-70 (218)
171 2g9w_A Conserved hypothetical 46.9 27 0.00093 26.6 4.8 46 20-67 13-62 (138)
172 1mzb_A Ferric uptake regulatio 46.8 23 0.00077 27.3 4.4 46 21-67 23-73 (136)
173 2zdi_C Prefoldin subunit alpha 46.0 80 0.0027 24.9 7.6 78 47-124 39-140 (151)
174 3to7_A Histone acetyltransfera 45.9 28 0.00095 31.3 5.3 55 9-68 180-240 (276)
175 1z4h_A TORI, TOR inhibition pr 45.6 16 0.00055 24.8 3.0 26 29-55 7-32 (66)
176 3hho_A CO-chaperone protein HS 45.4 1.2E+02 0.004 24.6 8.8 98 13-125 19-142 (174)
177 3c7j_A Transcriptional regulat 44.9 21 0.00071 30.1 4.2 50 17-67 31-83 (237)
178 2ozu_A Histone acetyltransfera 44.9 20 0.00067 32.4 4.1 53 9-65 185-243 (284)
179 1uly_A Hypothetical protein PH 44.6 1.3E+02 0.0044 24.6 10.9 44 19-66 23-66 (192)
180 3he5_B Synzip2; heterodimeric 44.5 67 0.0023 21.3 6.0 39 87-125 8-46 (52)
181 4fx0_A Probable transcriptiona 44.4 20 0.00069 27.7 3.7 36 30-66 50-85 (148)
182 1fp2_A Isoflavone O-methyltran 43.1 20 0.00069 31.4 3.9 51 22-73 42-96 (352)
183 3m91_A Proteasome-associated A 42.8 74 0.0025 21.4 5.9 38 88-125 8-45 (51)
184 1y6u_A XIS, excisionase from t 42.5 20 0.0007 25.3 3.2 26 29-55 13-38 (70)
185 3hrs_A Metalloregulator SCAR; 41.8 27 0.00094 29.0 4.4 39 29-68 17-55 (214)
186 3lwf_A LIN1550 protein, putati 41.7 29 0.00099 28.0 4.4 46 20-66 31-77 (159)
187 2kfs_A Conserved hypothetical 41.7 18 0.00062 29.6 3.1 26 29-55 28-53 (148)
188 2yy0_A C-MYC-binding protein; 41.5 49 0.0017 22.3 4.8 30 91-120 21-50 (53)
189 3ic7_A Putative transcriptiona 41.2 4.9 0.00017 31.0 -0.4 51 17-68 16-70 (126)
190 3on2_A Probable transcriptiona 40.9 20 0.00068 27.1 3.2 50 1-51 1-50 (199)
191 4aik_A Transcriptional regulat 40.4 34 0.0012 26.4 4.5 41 24-66 39-79 (151)
192 1xd7_A YWNA; structural genomi 40.2 53 0.0018 25.4 5.6 47 18-67 11-57 (145)
193 3u1d_A Uncharacterized protein 39.9 37 0.0013 27.6 4.7 46 21-67 34-80 (151)
194 1p4x_A Staphylococcal accessor 39.5 35 0.0012 29.3 4.8 45 21-66 39-83 (250)
195 1bia_A BIRA bifunctional prote 39.3 29 0.001 30.7 4.4 54 19-75 8-62 (321)
196 2w83_C C-JUN-amino-terminal ki 39.0 34 0.0011 25.2 3.9 35 86-120 41-75 (77)
197 3gp4_A Transcriptional regulat 38.6 54 0.0019 25.7 5.5 34 88-121 87-120 (142)
198 2obp_A Putative DNA-binding pr 38.6 27 0.00092 26.3 3.5 39 27-66 31-69 (96)
199 1hw1_A FADR, fatty acid metabo 38.5 25 0.00087 28.9 3.6 48 19-67 14-65 (239)
200 2hs5_A Putative transcriptiona 38.3 27 0.00093 29.3 3.9 40 28-68 47-86 (239)
201 3viq_B Mating-type switching p 38.2 21 0.00072 26.7 2.7 30 92-121 4-33 (85)
202 3f1b_A TETR-like transcription 38.0 19 0.00065 27.4 2.6 41 11-52 13-53 (203)
203 2jn6_A Protein CGL2762, transp 37.5 20 0.00069 25.6 2.5 40 20-62 13-52 (97)
204 2wt7_A Proto-oncogene protein 37.0 86 0.0029 21.4 5.7 33 91-123 25-57 (63)
205 4a6d_A Hydroxyindole O-methylt 36.7 28 0.00095 30.8 3.9 46 21-68 33-78 (353)
206 1t33_A Putative transcriptiona 36.2 13 0.00046 29.1 1.5 49 1-51 1-49 (224)
207 2fxa_A Protease production reg 35.8 14 0.00048 30.4 1.6 36 31-67 61-96 (207)
208 2fq4_A Transcriptional regulat 35.5 23 0.00079 27.3 2.8 42 9-51 9-50 (192)
209 4etp_A Kinesin-like protein KA 35.3 2.2E+02 0.0074 26.2 9.8 35 90-124 4-38 (403)
210 1sd4_A Penicillinase repressor 35.0 49 0.0017 24.2 4.5 47 19-67 13-62 (126)
211 2ou2_A Histone acetyltransfera 34.8 34 0.0012 30.8 4.0 53 9-65 178-241 (280)
212 3mcz_A O-methyltransferase; ad 34.4 31 0.0011 29.9 3.7 39 32-72 56-94 (352)
213 1ci6_A Transcription factor AT 34.3 1E+02 0.0034 21.2 5.7 29 92-120 26-54 (63)
214 1r8e_A Multidrug-efflux transp 33.9 2E+02 0.007 23.8 9.2 84 30-124 3-107 (278)
215 2fe3_A Peroxide operon regulat 33.8 53 0.0018 25.5 4.7 45 21-67 27-76 (145)
216 2di3_A Bacterial regulatory pr 33.8 32 0.0011 28.5 3.6 37 28-65 23-60 (239)
217 1j9i_A GPNU1 DBD;, terminase s 33.6 36 0.0012 23.0 3.2 40 32-75 2-43 (68)
218 1lwu_C Fibrinogen gamma chain; 33.5 25 0.00086 32.1 3.0 29 96-124 26-54 (323)
219 2dk8_A DNA-directed RNA polyme 33.1 1.3E+02 0.0045 21.9 6.4 66 10-76 8-74 (81)
220 1zg3_A Isoflavanone 4'-O-methy 32.9 34 0.0011 30.0 3.7 45 21-66 35-81 (358)
221 3c2b_A Transcriptional regulat 32.9 25 0.00086 27.4 2.6 47 5-52 8-54 (221)
222 2w57_A Ferric uptake regulatio 32.7 41 0.0014 26.4 3.9 46 21-67 22-72 (150)
223 3cta_A Riboflavin kinase; stru 32.2 25 0.00087 29.2 2.7 38 29-67 24-61 (230)
224 2qc0_A Uncharacterized protein 31.9 49 0.0017 30.0 4.7 45 20-67 301-345 (373)
225 1ci6_A Transcription factor AT 31.9 1.2E+02 0.004 20.8 5.7 34 86-119 27-60 (63)
226 1uix_A RHO-associated kinase; 31.7 1.3E+02 0.0046 21.6 6.1 37 84-120 13-49 (71)
227 2pjp_A Selenocysteine-specific 31.4 72 0.0025 24.0 5.0 51 15-68 65-115 (121)
228 2qlz_A Transcription factor PF 31.4 48 0.0016 28.4 4.3 43 30-73 176-218 (232)
229 2xdj_A Uncharacterized protein 31.3 1.4E+02 0.0049 21.8 6.4 38 86-123 24-61 (83)
230 4aci_A HTH-type transcriptiona 31.2 17 0.00059 27.7 1.3 47 5-52 7-53 (191)
231 2v7f_A RPS19, RPS19E SSU ribos 30.7 57 0.0019 26.3 4.4 43 21-67 59-115 (150)
232 2wg5_A General control protein 30.6 71 0.0024 24.2 4.7 60 91-165 9-68 (109)
233 2j5u_A MREC protein; bacterial 30.4 47 0.0016 28.8 4.1 47 87-134 24-71 (255)
234 1ft9_A Carbon monoxide oxidati 30.3 69 0.0024 25.4 4.9 36 33-69 164-199 (222)
235 1hqc_A RUVB; extended AAA-ATPa 30.1 57 0.002 27.4 4.6 51 16-67 247-299 (324)
236 3edp_A LIN2111 protein; APC883 30.1 79 0.0027 26.5 5.4 49 17-66 14-66 (236)
237 4ev0_A Transcription regulator 30.0 69 0.0024 25.0 4.8 38 32-71 163-200 (216)
238 4b4t_K 26S protease regulatory 29.9 2.4E+02 0.0084 26.1 9.3 76 86-164 46-123 (428)
239 3m9b_A Proteasome-associated A 29.3 76 0.0026 28.0 5.3 71 89-164 54-127 (251)
240 2rae_A Transcriptional regulat 29.2 55 0.0019 25.0 4.0 43 8-51 13-55 (207)
241 2guh_A Putative TETR-family tr 29.0 34 0.0012 27.3 2.8 41 11-52 38-78 (214)
242 2pq8_A Probable histone acetyl 29.0 33 0.0011 30.8 3.0 52 9-65 180-237 (278)
243 3dkw_A DNR protein; CRP-FNR, H 28.9 46 0.0016 26.2 3.6 39 32-72 178-216 (227)
244 1fp1_D Isoliquiritigenin 2'-O- 28.9 46 0.0016 29.3 3.9 45 22-66 50-101 (372)
245 2wv0_A YVOA, HTH-type transcri 28.8 90 0.0031 26.2 5.6 49 17-66 15-67 (243)
246 3mwm_A ZUR, putative metal upt 28.6 73 0.0025 24.6 4.7 45 21-67 19-68 (139)
247 3ppb_A Putative TETR family tr 28.5 59 0.002 24.3 4.0 42 9-51 6-47 (195)
248 3dv8_A Transcriptional regulat 28.4 34 0.0012 26.9 2.7 39 32-72 169-207 (220)
249 3dcf_A Transcriptional regulat 28.4 50 0.0017 25.3 3.7 40 11-51 30-69 (218)
250 1t2k_D Cyclic-AMP-dependent tr 28.4 1.4E+02 0.0047 20.1 5.7 33 91-123 24-56 (61)
251 2iu5_A DHAS, YCEG, HTH-type dh 28.1 55 0.0019 25.1 3.8 39 12-51 13-51 (195)
252 3gbg_A TCP pilus virulence reg 28.1 66 0.0023 26.7 4.6 38 17-55 170-207 (276)
253 1g2h_A Transcriptional regulat 27.8 73 0.0025 21.2 4.0 38 13-55 17-55 (61)
254 2xig_A Ferric uptake regulatio 27.7 77 0.0026 24.8 4.7 45 21-67 32-81 (150)
255 1uii_A Geminin; human, DNA rep 27.7 1.2E+02 0.004 22.6 5.3 22 99-120 49-70 (83)
256 3q8t_A Beclin-1; autophagy, AT 27.3 1.7E+02 0.0059 21.7 6.4 34 92-125 21-54 (96)
257 1jnm_A Proto-oncogene C-JUN; B 27.2 1.3E+02 0.0043 20.4 5.1 32 91-122 24-55 (62)
258 2qib_A TETR-family transcripti 27.1 38 0.0013 27.0 2.8 40 11-51 12-51 (231)
259 2qtq_A Transcriptional regulat 27.0 69 0.0023 24.4 4.2 43 8-51 12-54 (213)
260 3uo3_A J-type CO-chaperone JAC 26.8 2.6E+02 0.0089 22.8 9.3 107 9-125 27-147 (181)
261 3u06_A Protein claret segregat 26.8 76 0.0026 29.6 5.1 34 91-124 5-38 (412)
262 1nkp_B MAX protein, MYC proto- 26.7 1.4E+02 0.0047 21.2 5.5 35 88-122 46-80 (83)
263 2k6x_A Sigma-A, RNA polymerase 26.5 26 0.00088 24.6 1.5 28 116-145 8-35 (72)
264 3kkc_A TETR family transcripti 26.5 29 0.001 25.9 1.9 39 12-51 12-50 (177)
265 1zk8_A Transcriptional regulat 26.5 53 0.0018 24.7 3.4 42 9-51 5-46 (183)
266 3k9t_A Putative peptidase; str 26.4 36 0.0012 32.4 2.8 42 21-64 392-433 (435)
267 2bgc_A PRFA; bacterial infecti 26.2 61 0.0021 26.1 3.9 35 32-67 169-204 (238)
268 2dg7_A Putative transcriptiona 26.2 73 0.0025 24.2 4.2 38 13-51 8-45 (195)
269 2hku_A A putative transcriptio 26.0 47 0.0016 25.9 3.1 41 9-51 17-57 (215)
270 3e6c_C CPRK, cyclic nucleotide 25.6 79 0.0027 25.6 4.5 39 32-72 177-215 (250)
271 1fx7_A Iron-dependent represso 25.4 80 0.0027 26.1 4.6 35 33-68 25-59 (230)
272 2hxo_A Putative TETR-family tr 25.2 81 0.0028 25.9 4.6 42 9-51 13-54 (237)
273 2yko_A LINE-1 ORF1P; RNA-bindi 25.2 1.4E+02 0.0049 26.0 6.2 40 86-125 10-49 (233)
274 3f8m_A GNTR-family protein tra 25.2 56 0.0019 27.7 3.7 43 28-71 31-74 (248)
275 2p5k_A Arginine repressor; DNA 25.1 87 0.003 20.1 3.9 37 23-66 12-53 (64)
276 3qkx_A Uncharacterized HTH-typ 24.9 56 0.0019 24.3 3.3 39 12-51 8-46 (188)
277 1q08_A Zn(II)-responsive regul 24.7 77 0.0026 22.6 3.9 23 19-44 6-28 (99)
278 2qq9_A Diphtheria toxin repres 24.6 1.1E+02 0.0037 25.4 5.3 38 30-68 22-59 (226)
279 3bwg_A Uncharacterized HTH-typ 24.3 1.2E+02 0.0041 25.3 5.5 48 18-66 11-62 (239)
280 3iv1_A Tumor susceptibility ge 24.2 2.1E+02 0.0072 20.9 6.1 39 86-124 36-74 (78)
281 3he0_A Transcriptional regulat 24.2 69 0.0024 24.1 3.7 42 9-51 8-49 (196)
282 3gpv_A Transcriptional regulat 24.2 71 0.0024 25.1 3.9 30 89-118 102-131 (148)
283 1d5y_A ROB transcription facto 24.0 57 0.002 27.3 3.5 42 17-59 4-45 (292)
284 1l8d_A DNA double-strand break 23.9 1.8E+02 0.0063 21.2 6.0 39 86-124 7-45 (112)
285 2qko_A Possible transcriptiona 23.7 60 0.0021 25.2 3.4 41 10-51 26-66 (215)
286 1tc3_C Protein (TC3 transposas 23.6 45 0.0016 19.6 2.1 26 33-59 22-47 (51)
287 2yua_A Williams-beuren syndrom 23.5 1.1E+02 0.0037 22.2 4.5 43 11-53 28-81 (99)
288 2yve_A Transcriptional regulat 23.5 70 0.0024 24.4 3.7 36 15-51 7-42 (185)
289 2zkz_A Transcriptional repress 23.4 81 0.0028 22.6 3.8 37 30-68 39-75 (99)
290 1l8d_A DNA double-strand break 23.4 1.7E+02 0.0059 21.4 5.8 33 88-120 70-102 (112)
291 2pjp_A Selenocysteine-specific 23.2 62 0.0021 24.4 3.2 51 18-72 9-59 (121)
292 1jko_C HIN recombinase, DNA-in 23.2 59 0.002 19.5 2.6 22 33-55 22-43 (52)
293 1tu3_F RAB GTPase binding effe 23.1 1.6E+02 0.0056 21.5 5.2 60 86-153 16-75 (79)
294 3lwj_A Putative TETR-family tr 23.1 44 0.0015 25.5 2.3 42 9-51 9-50 (202)
295 3kcc_A Catabolite gene activat 23.0 1.6E+02 0.0056 24.0 6.1 35 32-67 217-251 (260)
296 3kz9_A SMCR; transcriptional r 23.0 86 0.003 23.6 4.1 37 14-51 19-55 (206)
297 3col_A Putative transcription 22.9 57 0.0019 24.4 3.0 42 9-51 7-48 (196)
298 1gmj_A ATPase inhibitor; coile 22.9 2.1E+02 0.0071 21.2 5.9 28 98-125 53-80 (84)
299 2gqq_A Leucine-responsive regu 22.8 25 0.00085 27.7 0.9 49 14-65 11-59 (163)
300 4dzn_A Coiled-coil peptide CC- 22.8 1.4E+02 0.0046 18.1 4.6 24 92-115 5-28 (33)
301 3knw_A Putative transcriptiona 22.7 50 0.0017 25.2 2.7 43 8-51 10-52 (212)
302 3bru_A Regulatory protein, TET 22.7 84 0.0029 24.2 4.0 40 11-51 29-68 (222)
303 1fpo_A HSC20, chaperone protei 22.7 3E+02 0.01 22.1 8.8 101 10-125 13-138 (171)
304 3e97_A Transcriptional regulat 22.6 62 0.0021 25.7 3.3 39 32-72 175-213 (231)
305 2q24_A Putative TETR family tr 22.6 77 0.0026 24.1 3.7 38 12-51 15-52 (194)
306 3ryp_A Catabolite gene activat 22.5 1.6E+02 0.0056 22.6 5.7 35 32-67 167-201 (210)
307 3ccy_A Putative TETR-family tr 22.3 93 0.0032 23.8 4.2 42 9-51 11-52 (203)
308 1fzc_C Fibrin; blood coagulati 22.1 25 0.00085 32.0 0.8 99 87-195 2-101 (319)
309 1sgm_A Putative HTH-type trans 21.9 67 0.0023 24.0 3.2 38 13-51 7-44 (191)
310 2oz6_A Virulence factor regula 21.9 65 0.0022 24.9 3.2 38 33-72 165-202 (207)
311 3ke2_A Uncharacterized protein 21.7 85 0.0029 24.7 3.7 33 31-64 32-64 (117)
312 2dg8_A Putative TETR-family tr 21.6 66 0.0023 24.6 3.1 41 10-51 7-47 (193)
313 3eqx_A FIC domain containing t 21.4 1.1E+02 0.0037 27.9 5.0 45 20-67 301-345 (373)
314 3bni_A Putative TETR-family tr 21.3 48 0.0016 26.4 2.3 38 13-51 44-81 (229)
315 3cwr_A Transcriptional regulat 21.1 70 0.0024 24.1 3.2 40 11-51 16-55 (208)
316 2yu3_A DNA-directed RNA polyme 21.0 1.7E+02 0.0059 21.8 5.2 54 12-66 33-86 (95)
317 3vp5_A Transcriptional regulat 21.0 38 0.0013 26.2 1.6 38 13-51 13-50 (189)
318 3t97_C Nuclear pore glycoprote 20.9 2.2E+02 0.0075 19.8 5.7 37 86-122 9-45 (64)
319 2v57_A TETR family transcripti 20.9 74 0.0025 23.9 3.2 40 9-51 11-50 (190)
320 2zcw_A TTHA1359, transcription 20.6 71 0.0024 24.9 3.2 38 33-72 147-184 (202)
321 1r8d_A Transcription activator 20.6 2.5E+02 0.0086 20.4 7.0 83 33-124 3-96 (109)
322 3b02_A Transcriptional regulat 20.5 62 0.0021 25.1 2.8 34 33-67 140-173 (195)
323 3p9c_A Caffeic acid O-methyltr 20.4 88 0.003 27.7 4.1 46 21-66 45-94 (364)
324 3eet_A Putative GNTR-family tr 20.4 82 0.0028 27.1 3.8 49 17-66 34-86 (272)
325 3him_A Probable transcriptiona 20.3 56 0.0019 24.8 2.4 42 9-51 13-54 (211)
No 1
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=100.00 E-value=1.6e-37 Score=246.08 Aligned_cols=102 Identities=21% Similarity=0.393 Sum_probs=95.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCccccchhhhhh--cCCCCeEEEEECCCCCeEEecC
Q psy7686 86 LEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRKQCYIPTDVILG--MFPDSSLMCLKAPYGTKLHVPS 163 (243)
Q Consensus 86 ~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ed~~n~~~aYVT~~Di~~--~f~~qtviaIkAP~~T~leVp~ 163 (243)
++..++..||+|++.|.++|+.||++|++|+++|+++++|..|.+|+||||+||++ +|++|||||||||+||+||||+
T Consensus 3 ~~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qtviaIkAP~gT~LeVpd 82 (106)
T 2aze_B 3 HMGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVD 82 (106)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCeEEEEECCCCCeeeeCC
Confidence 45667889999999999999999999999999999999999999999999999998 5999999999999999999999
Q ss_pred CCCCCceEEEEEecCCCCCCeEEEEecCC
Q psy7686 164 ISTDENKIKLHVKSSHPEEPVNILLLDTE 192 (243)
Q Consensus 164 p~~~~~~yqi~LkS~~~~GpI~V~L~~~~ 192 (243)
|+ .+|||||||++ ||||||||+++
T Consensus 83 p~---~~yqi~LkS~~--GPIdV~L~~~e 106 (106)
T 2aze_B 83 SS---ENFQISLKSKQ--GPIDVFLCPEE 106 (106)
T ss_dssp CS---SCEEEEEECSS--SCCEEECCTTC
T ss_pred CC---cceEEEEECCC--CCEEEEEeCCC
Confidence 97 48999999999 99999999975
No 2
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.96 E-value=2.5e-30 Score=193.87 Aligned_cols=74 Identities=72% Similarity=1.013 Sum_probs=66.4
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEeccCC
Q psy7686 5 PANSRFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKALKN 78 (243)
Q Consensus 5 ~~~~R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~G~~~ 78 (243)
++.+|+++||++||++||+++.++++++++|++||+.|+|++|||||||+|||||||||+|.+||.|+|+|.++
T Consensus 3 ~~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~~ 76 (76)
T 1cf7_A 3 GTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVGP 76 (76)
T ss_dssp ---CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC----
T ss_pred CCCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeCCCC
Confidence 46789999999999999999999999999999999999998999999999999999999999999999999763
No 3
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.47 E-value=3.7e-14 Score=110.13 Aligned_cols=68 Identities=29% Similarity=0.478 Sum_probs=55.8
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhc-------------------ccchhhhhhHHHhhhhccceecccc
Q psy7686 8 SRFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLE-------------------VKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 8 ~R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~-------------------v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
.+..++|..++.+..+.+++ .+..+.+++|+.|- . +|||+||++|||+|+|+|+| .|
T Consensus 6 ~k~~~GLr~fS~kVcekVk~--k~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~-~rRRvYD~~NVl~a~gii~K-~k 81 (95)
T 1cf7_B 6 DKNGKGLRHFSMKVCEKVQR--KGTTSYNEVADELVSEFTNSNNHLAADSAYDQKN-IRRRVYDALNVLMAMNIISK-EK 81 (95)
T ss_dssp ---CCHHHHHHHHHHHHHHH--HSEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHH-HHHHHHHHHHHHHHTTSBCC-CS
T ss_pred cccCccHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHhcccccCccchhccccc-chhhHHHHHHHHHHhcceec-CC
Confidence 45678888899999998876 67778888888873 2 79999999999999999999 79
Q ss_pred CceEEeccCCC
Q psy7686 69 NIIRWKALKNK 79 (243)
Q Consensus 69 n~i~W~G~~~~ 79 (243)
+.|+|+|.++.
T Consensus 82 ~~i~W~g~~~~ 92 (95)
T 1cf7_B 82 KEIKWIGLPTN 92 (95)
T ss_dssp SCEEBCCCC--
T ss_pred CEEEEecCCcc
Confidence 99999998764
No 4
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=95.14 E-value=0.036 Score=39.19 Aligned_cols=44 Identities=18% Similarity=0.371 Sum_probs=39.9
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhcccee
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIE 64 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~ 64 (243)
.+.++++++ .+|++|+...|.+++| .|--+||+.+=|+.=|||.
T Consensus 13 ~~lL~yIr~-sGGildI~~~a~kygV-~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVN-NGGFLDIEHFSKVYGV-EKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHH-TTSEEEHHHHHHHHCC-CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHH-cCCEEeHHHHHHHhCC-CHHHHHHHHHHHHHCCCee
Confidence 456788886 5999999999999999 9999999999999999986
No 5
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=93.59 E-value=0.14 Score=38.23 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=53.2
Q ss_pred cCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEeccCC
Q psy7686 11 EKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKALKN 78 (243)
Q Consensus 11 ~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~G~~~ 78 (243)
|-.-..+.++.+.+|+. +| +...++|..||+ .|.-++=.++-||.=|+|.+.+.+--.|.=...
T Consensus 12 d~~~~~~~~~IL~lL~~--~g-~sa~eLAk~Lgi-Sk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~~~ 75 (82)
T 1oyi_A 12 ERSNAEIVCEAIKTIGI--EG-ATAAQLTRQLNM-EKREVNKALYDLQRSAMVYSSDDIPPRWFMTTE 75 (82)
T ss_dssp -CCSHHHHHHHHHHHSS--ST-EEHHHHHHHSSS-CHHHHHHHHHHHHHHTSSEECSSSSCEEESCC-
T ss_pred ccchHHHHHHHHHHHHH--cC-CCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEeCCCCCCcceeccC
Confidence 34556677889999984 55 999999999999 988888888899999999999999999975443
No 6
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=93.00 E-value=0.16 Score=36.79 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=47.4
Q ss_pred HHHHHHHhhCC-CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEec
Q psy7686 19 TKFVSLLQQAP-EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKA 75 (243)
Q Consensus 19 ~kFi~ll~~~~-~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~G 75 (243)
.+.+.+|.+.+ +..+...++|+.|+| .|+.|.-.+.-|+.-|+|.+.+.+.=.|.=
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgv-s~~tV~~~L~~L~~~G~I~~~g~~~~~W~i 73 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGT-PKKEINRVLYSLAKKGKLQKEAGTPPLWKI 73 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCC-CHHHHHHHHHHHHHHTSEEEECSSSCEEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEecCCCCCceEe
Confidence 66778887654 567999999999999 999999999999999999998666567743
No 7
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=92.48 E-value=0.21 Score=34.94 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCc
Q psy7686 17 LTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNI 70 (243)
Q Consensus 17 Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~ 70 (243)
.-.+.+++|.. .+..+.+.++|+.|++ .|.-++-+++.|+.-|+|....+..
T Consensus 11 ~~~~IL~~L~~-~~~~~s~~eLA~~lgl-sr~tv~~~l~~L~~~G~I~~~~~G~ 62 (67)
T 2heo_A 11 LEQKILQVLSD-DGGPVAIFQLVKKCQV-PKKTLNQVLYRLKKEDRVSSPSPKY 62 (67)
T ss_dssp HHHHHHHHHHH-HCSCEEHHHHHHHHCS-CHHHHHHHHHHHHHTTSEEEEETTE
T ss_pred HHHHHHHHHHH-cCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCcEecCCCce
Confidence 34567888875 3456999999999999 9999999999999999998754443
No 8
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=92.32 E-value=0.4 Score=36.96 Aligned_cols=47 Identities=6% Similarity=0.179 Sum_probs=39.5
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+.+..|...++.-+...++|+.|++ .+-.+|-.++.|+..|+|.+.
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~-s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKL-DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEee
Confidence 34566666654333999999999999 999999999999999999985
No 9
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=91.92 E-value=0.62 Score=34.81 Aligned_cols=83 Identities=6% Similarity=0.039 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEeccCCCCchhhhHHHHHhHhHH
Q psy7686 16 LLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKALKNKNEEEYDLEQSKLIELR 95 (243)
Q Consensus 16 ~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~G~~~~~~~~~~~~~~~~~~Lk 95 (243)
.+.-..+..+. .+ +....+|..+++ ..|++-.+++.|+.-|||++.. +.|.- ...| .+.-..+..+.
T Consensus 8 eIi~~IL~~i~---~~-~~~t~La~~~~l-s~~~~~~~l~~L~~~GLI~~~~-~~~~L------T~kG-~~~l~~l~~~~ 74 (95)
T 1r7j_A 8 EIIQAILEACK---SG-SPKTRIMYGANL-SYALTGRYIKMLMDLEIIRQEG-KQYML------TKKG-EELLEDIRKFN 74 (95)
T ss_dssp HHHHHHHHHHT---TC-BCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEET-TEEEE------CHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHH---cC-CCHHHHHHHhCc-CHHHHHHHHHHHHHCCCeEEEC-CeeEE------ChhH-HHHHHHHHHHH
Confidence 34444555554 34 899999999999 9999999999999999999983 22221 1111 13334455555
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7686 96 DEISDMRNHEAVIDEH 111 (243)
Q Consensus 96 ~El~~L~~~E~~LD~~ 111 (243)
.++..|.+.|+.|.+.
T Consensus 75 ~~l~~l~~~e~~l~~~ 90 (95)
T 1r7j_A 75 EMRKNMDQLKEKINSV 90 (95)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555565555555433
No 10
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=91.71 E-value=0.27 Score=36.21 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=47.9
Q ss_pred HHHHHHHHhhC-CCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEeccC
Q psy7686 18 TTKFVSLLQQA-PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKALK 77 (243)
Q Consensus 18 t~kFi~ll~~~-~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~G~~ 77 (243)
-++.+.+|.+. |+..+...++|+.||| .|+-|.-.+.-|+.-|+|.+.+.+.=.|.=..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgv-sr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~ 71 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGT-PKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEESSSSCEEEEC-
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEecCCCCCeeEEeC
Confidence 45677777764 4567999999999999 99999999999999999999766667775433
No 11
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=89.82 E-value=4.6 Score=30.16 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=40.4
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
..+..+...+++.+...++|+.+++ .+-.+.-+++-|+.-|+|++.
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~-~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQR-TGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCC-CcccHHHHHHHHHHCCCEeec
Confidence 3455666666678999999999999 999999999999999999987
No 12
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=88.24 E-value=4.7 Score=29.39 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=37.4
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
+.+.++. ++.+...++|+.|++ .+--++-.++.|+.-|+|++...
T Consensus 25 ~IL~~L~---~~~~~~~ela~~l~i-s~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 25 EILTELG---RADQSASSLATRLPV-SRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHH---HSCBCHHHHHHHSSS-CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHH---cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeeEEec
Confidence 3455553 345899999999999 99999999999999999987643
No 13
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=88.06 E-value=1 Score=31.82 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=37.3
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceec
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEK 65 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K 65 (243)
+.+.++... +.+...++|+.|++ .+.-++-.++.|+.-|+|++
T Consensus 4 ~Il~~L~~~--~~~s~~eLa~~lgv-s~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 4 EILEFLNRH--NGGKTAEIAEALAV-TDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHS--CCCCHHHHHHHHTS-CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEE
Confidence 456666653 56899999999999 99999999999999999995
No 14
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=87.62 E-value=0.39 Score=37.63 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=40.1
Q ss_pred HHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 22 VSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 22 i~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+.++..++++.+...++|+.|++ .+=.+--+++-||.-|+|+|..
T Consensus 41 L~~L~~~~~~~~t~~eLa~~l~~-~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 41 LVLLTFSKSGELPMSKIGERLMV-HPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHHTSGGGEEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCCCCcCHHHHHHHHCC-CHHHHHHHHHHHHhCCCEEEee
Confidence 44556678889999999999999 9999999999999999999973
No 15
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=87.06 E-value=4.3 Score=30.81 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=33.2
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+..+...+++.+...++|+.+++ .+-.+.-+++-|+.-|+|+|..
T Consensus 46 vL~~l~~~~~~~~t~~eLa~~l~~-~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGR-RGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC-------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCC-ChhHHHHHHHHHHHCCCEEeeC
Confidence 445555555577999999999999 9999999999999999999973
No 16
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=86.27 E-value=1 Score=33.65 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=38.0
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNI 70 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~ 70 (243)
.+.++. .+.+.+.++|+.|++ .+.-++-.++.|+..|+|++...+.
T Consensus 30 IL~~L~---~~~~s~~eLa~~lgi-s~stvs~~L~~L~~~GlV~~~~~gr 75 (108)
T 2kko_A 30 ILDLLA---QGERAVEAIATATGM-NLTTASANLQALKSGGLVEARREGT 75 (108)
T ss_dssp HHHHHT---TCCEEHHHHHHHHTC-CHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred HHHHHH---cCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 344443 367899999999999 9999999999999999998764443
No 17
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=85.50 E-value=1.3 Score=31.45 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=37.7
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
.+.++. .++.+...++|+.|++ .+--++-.++.|+..|+|++...
T Consensus 29 il~~l~--~~~~~s~~ela~~l~i-s~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 29 ILCMLS--GSPGTSAGELTRITGL-SASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp HHHHHT--TCCSEEHHHHHHHHCC-CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHH--hCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEec
Confidence 344443 3557999999999999 99999999999999999998643
No 18
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=85.36 E-value=7.8 Score=28.90 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=36.6
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+..+.. .+.+...++|+.+++ .+--++-+++-|+.-|+|++.
T Consensus 38 iL~~l~~--~~~~~~~~la~~l~~-s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 38 ILQKIYF--EGPKRPGELSVLLGV-AKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp HHHHHHH--HCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCC-CchhHHHHHHHHHHCCCeeec
Confidence 3444443 356899999999999 999999999999999999996
No 19
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=85.18 E-value=6.6 Score=29.22 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=37.7
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+.+.++..+ ++.+.+.++|+.+++ .|-.++-+++.|+.-|+|++.
T Consensus 30 ~il~~L~~~-~~~~t~~ela~~l~~-~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLS-DKPLTISDIMEELKI-SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHC-SSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEE
Confidence 345555323 356999999999999 999999999999999999986
No 20
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=85.08 E-value=1.6 Score=33.44 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=38.6
Q ss_pred HHHHHHhhC-CCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 20 KFVSLLQQA-PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 20 kFi~ll~~~-~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+.+.++... +++.+...++|+.+++ .++-++.|.+.|+..|+|+..
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~~i-~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTNNL-SEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHTTS-CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHHCc-CHHHHHHHHHHHHHCCceEec
Confidence 344445443 3678999999999999 999999999999999999876
No 21
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=85.04 E-value=1.1 Score=33.55 Aligned_cols=46 Identities=7% Similarity=0.079 Sum_probs=39.5
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+..+...+++.+...++|+.+++ .+--++-+++-|+.-|+|++..
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~-~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSI-KSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCC-CcchHHHHHHHHHHCCCEEeeC
Confidence 455566665557999999999999 9999999999999999999863
No 22
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=84.54 E-value=2 Score=37.54 Aligned_cols=64 Identities=14% Similarity=0.260 Sum_probs=45.9
Q ss_pred CCcCcHHHHHHH--HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEec
Q psy7686 9 RFEKSLGLLTTK--FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKA 75 (243)
Q Consensus 9 R~~~SL~~Lt~k--Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~G 75 (243)
+.......+.+- .+++|...+ +.+.+.++|+.+|+ .|=-+|-+++.|+..|++++.....|. .|
T Consensus 21 ~~~~~v~sl~Ral~IL~~l~~~~-~~ltl~eia~~lgl-~ksTv~RlL~tL~~~G~v~~~~~~~Y~-LG 86 (275)
T 3mq0_A 21 QISDTVPALRRAVRILDLVAGSP-RDLTAAELTRFLDL-PKSSAHGLLAVMTELDLLARSADGTLR-IG 86 (275)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHCS-SCEEHHHHHHHHTC-C--CHHHHHHHHHHTTSEEECTTSEEE-EC
T ss_pred CCCCcchHHHHHHHHHHHHhhCC-CCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEECCCCcEE-eh
Confidence 334445555443 456666654 56999999999999 999999999999999999998644343 45
No 23
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=84.25 E-value=0.26 Score=44.98 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=42.6
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKAL 76 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~G~ 76 (243)
++.|+. .|.....++|+.+|+ .+.++|++.+.|+.-|+|++...+..+|.-.
T Consensus 24 Y~~Ll~---~g~~t~~eia~~~gv-~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av 75 (342)
T 3qph_A 24 YWTLLV---YGPSTAKEISTKSGI-PYNRVYDTISSLKLRGFVTEIEGTPKVYAAY 75 (342)
T ss_dssp SHHHHH---HHHHHHSCCSSSTTS-SSCSCCHHHHHHHHHTSEEEECCTTCEEEEC
T ss_pred HHHHHH---cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEcCceeEEEEc
Confidence 555664 356778889999999 9999999999999999999886666677643
No 24
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=83.94 E-value=2.5 Score=32.27 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
++.++.. ++.+.+.++|+.|++ .+--+.-+++.|+.-|+|++..
T Consensus 13 i~~l~~~--~~~~~~~ela~~l~v-s~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 13 IYMLIEE--KGYARVSDIAEALAV-HPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp HHHHHHH--HSSCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHhh--cCCCCHHHHHHHhCC-CHHHHHHHHHHHHHCCCEEEee
Confidence 3444433 345899999999999 9999999999999999999874
No 25
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=83.56 E-value=1.6 Score=31.58 Aligned_cols=47 Identities=17% Similarity=0.078 Sum_probs=39.0
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEE
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRW 73 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W 73 (243)
.+.++ .+.+...++|+.|++ .+--++-.++.|+.-|+|++.. ..|..
T Consensus 36 Il~~L----~~~~~~~eLa~~l~i-s~~tv~~~L~~L~~~Glv~~~~-g~y~l 82 (96)
T 1y0u_A 36 ILRML----DKGRSEEEIMQTLSL-SKKQLDYHLKVLEAGFCIERVG-ERWVV 82 (96)
T ss_dssp HHHHH----HTTCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred HHHHH----cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEC-CEEEE
Confidence 44555 355899999999999 9999999999999999999876 54444
No 26
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=82.92 E-value=1.9 Score=32.67 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=39.2
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+.++...+++.+...++|+.|++ .+--+.-+++-|+.-|+|+|.
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~-~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNY-KQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSS-HHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHhccCCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEec
Confidence 445555555678999999999999 999999999999999999996
No 27
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=82.87 E-value=1.1 Score=31.66 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=39.0
Q ss_pred HHHHHhhCCCCeeeHHHHHhhh-----cccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENL-----EVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L-----~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+++|...+++.++..++++.| ++ .+=-+|=..+.|+..|+|.+..
T Consensus 22 IL~~l~~~~~~~~s~~el~~~l~~~~~~i-s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 22 ILEVLQEPDNHHVSAEDLYKRLIDMGEEI-GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHTSGGGSSBCHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCC-CHhhHHHHHHHHHHCCCeEEEe
Confidence 5566665433679999999999 89 9999999999999999999863
No 28
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=82.29 E-value=1.1 Score=31.96 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=34.7
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
++.+...++|+.+++ .+--+|-+++.|+.-|+|++...
T Consensus 34 ~~~~t~~ela~~l~i-s~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 34 EKPITSEELADIFKL-SKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp CSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEeecc
Confidence 456899999999999 99999999999999999998743
No 29
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=82.16 E-value=7.3 Score=30.31 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=35.6
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+.++...+++.+...++|+.|++ .+--+.-+++-||.-|+|+|..
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~-~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLIS-RAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC----CTHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCC-ChhhHHHHHHHHHHCCCEeecC
Confidence 344444444567999999999999 9999999999999999999873
No 30
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=81.83 E-value=1.4 Score=31.34 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=37.9
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+.+.++.. .+.+...++|+.+++ .+--+|-+++.|+.-|+|++..
T Consensus 24 ~il~~l~~--~~~~s~~ela~~l~i-s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 24 RIYSLLLE--RGGMRVSEIARELDL-SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHH--HCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEEe
Confidence 34555544 345899999999999 9999999999999999999864
No 31
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=81.77 E-value=6.7 Score=27.62 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=37.0
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+.++.. ++.+...++|+.|++ .+-.+|-.++.|+.-|+|++..
T Consensus 21 iL~~L~~--~~~~~~~ela~~l~i-s~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 21 IMIFLLP--RRKAPFSQIQKVLDL-TPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHH--HSEEEHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHh--cCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEe
Confidence 4444543 356899999999999 9999999999999999999753
No 32
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=81.46 E-value=9.2 Score=28.51 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=34.1
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+.+...++|+.|++ .+--++-+++-|+.-|+|++.
T Consensus 48 ~~~~~~~ela~~l~~-s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 48 DGPKTMAYLANRYFV-TQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp TSCBCHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHhCC-CchhHHHHHHHHHHCCCEEee
Confidence 667899999999999 999999999999999999986
No 33
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=81.22 E-value=11 Score=29.64 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=33.5
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
++.+...++|+.+++ .+-.+.-+++-|+.-|+|+|..
T Consensus 66 ~~~~t~~eLa~~l~i-~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 66 PPDQSQIQLAKAIGI-EQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp CSSEEHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCCCHHHHHHHHCC-CHhhHHHHHHHHHHCCCEEeeC
Confidence 344999999999999 9999999999999999999973
No 34
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=80.69 E-value=14 Score=27.63 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=36.3
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+..+.. .+.+...++|+.+++ .+-.+.-+++-||.-|+|++.
T Consensus 45 iL~~l~~--~~~~t~~ela~~l~~-~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 45 IISVLSS--ASDCSVQKISDILGL-DKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHH--SSSBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHc--CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEee
Confidence 4444444 347899999999999 999999999999999999987
No 35
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=80.41 E-value=3.5 Score=37.19 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=49.0
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccc-eeccccCceEEeccC
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGL-IEKNNKNIIRWKALK 77 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgigl-I~K~sKn~i~W~G~~ 77 (243)
++.+++|.++++..++-.++|+.|+| .|+-|+--++.|+..|+ |+...+.-|+..+..
T Consensus 6 ~~iL~~L~~~~g~~~Sg~eLa~~lgv-Sr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~~~ 64 (323)
T 3rkx_A 6 QDVLQLLYKNKPNYISGQSIAESLNI-SRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQLP 64 (323)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTS-CHHHHHHHHHHHHHTTCEEEEETTTEEEEEECC
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHCC-CHHHHHHHHHHHHhcCCeEEEeCCCeEEEecCc
Confidence 56788887767778999999999999 99999999999999998 665555678887643
No 36
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=80.38 E-value=12 Score=28.81 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=42.1
Q ss_pred CcHHH-HHHHHHHHHhh---CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 12 KSLGL-LTTKFVSLLQQ---APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 12 ~SL~~-Lt~kFi~ll~~---~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
..|.. +...+...+.. .|+..+ +..++|+.|+| .|=-+-.....|+.-|||+...
T Consensus 13 ~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gV-Sr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 13 LPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGV-NPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCC-CHHHHHHHHHHHHHCCcEEEEc
Confidence 34443 44455555543 467777 89999999999 9999999999999999998763
No 37
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=80.25 E-value=2.7 Score=30.88 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=51.2
Q ss_pred cCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEec
Q psy7686 11 EKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKA 75 (243)
Q Consensus 11 ~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~G 75 (243)
|.....+.+++|..|. +++.+..+.+|.+||+ .|+-|==+..-|+.=|.+.+...+--.|.-
T Consensus 10 ~~~~~~~v~~~i~~L~--~~~~~Ta~~IAkkLg~-sK~~vNr~LY~L~kkG~V~~~~~~PP~W~~ 71 (75)
T 1sfu_A 10 DAEIFSLVKKEVLSLN--TNDYTTAISLSNRLKI-NKKKINQQLYKLQKEDTVKMVPSNPPKWFK 71 (75)
T ss_dssp SHHHHHHHHHHHHTSC--TTCEECHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEECCSSCEEEE
T ss_pred hHHHHHHHHHHHHhCC--CCcchHHHHHHHHHCC-CHHHHHHHHHHHHHCCCEecCCCCCCCccC
Confidence 3445566677777654 4666999999999999 999888899999999999999999999963
No 38
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=79.96 E-value=2.1 Score=36.88 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=36.4
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCce
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNII 71 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i 71 (243)
++.+.+.++|+.+++ .|--+|-+++.|+..|+|++.....|
T Consensus 36 ~~~~~~~eia~~~gl-~kstv~r~l~tL~~~G~v~~~~~~~Y 76 (260)
T 2o0y_A 36 HPTRSLKELVEGTKL-PKTTVVRLVATMCARSVLTSRADGSY 76 (260)
T ss_dssp BSSBCHHHHHHHHCC-CHHHHHHHHHHHHHTTSEEECTTSCE
T ss_pred CCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEECCCCeE
Confidence 457999999999999 99999999999999999999754433
No 39
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=79.53 E-value=5.6 Score=29.52 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=33.1
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+...+.++|+.|++ .+--++-.++.||..|+|.+..
T Consensus 44 ~~~s~~ela~~l~i-s~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 44 GPLPVTDLAEAIGM-EQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CCCCHHHHHHHHSS-CHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEe
Confidence 45899999999999 9999999999999999998763
No 40
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=79.48 E-value=2.7 Score=30.26 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=34.3
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
+.+...++|+.|++ .+.-++--++.|+.-|+|++...
T Consensus 35 ~~~~~~ela~~l~i-s~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 35 QELSVGELCAKLQL-SQSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp SCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEe
Confidence 78999999999999 99999999999999999987643
No 41
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.46 E-value=11 Score=28.26 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+..+... .+.+...++|+.|++ .+--++-+++-|+.-|+|++.
T Consensus 40 iL~~l~~~-~~~~~~~~la~~l~i-~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 40 VLGAIDRL-GGDVTPSELAAAERM-RSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCCCCHHHHHHHhCC-ChhhHHHHHHHHHHCCCEeeC
Confidence 44444442 456899999999999 999999999999999999986
No 42
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=79.16 E-value=2.2 Score=31.56 Aligned_cols=44 Identities=11% Similarity=0.255 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
.+.++. ++.+.+.++|+.|++ .+--++-.++.|+..|+|.+...
T Consensus 31 IL~~L~---~~~~~~~ela~~l~i-s~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 31 IMELLS---VSEASVGHISHQLNL-SQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp HHHHHH---HCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHH---hCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEe
Confidence 445554 355899999999999 99999999999999999997643
No 43
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=78.70 E-value=6.3 Score=29.58 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=38.5
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccC
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKN 69 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn 69 (243)
+.+.++. +|.+...++|+.|++ .+--+.--+++|+..|+|++....
T Consensus 22 ~Il~~L~---~~~~~~~eLa~~l~i-s~~tvs~hL~~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 22 AVLGRLS---RGPATVSELAKPFDM-ALPSFMKHIHFLEDSGWIRTHKQG 67 (118)
T ss_dssp HHHHHHH---TCCEEHHHHHTTCCS-CHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHH---hCCCCHHHHHHHhCc-CHHHHHHHHHHHHHCCCeEEEecC
Confidence 3455565 466899999999999 999999999999999999876443
No 44
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=78.50 E-value=17 Score=27.63 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=33.0
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+.+...++|+.|++ .+--++-+++-|+.-|+|++..
T Consensus 61 ~~~~t~~ela~~l~i-s~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 61 YPGSSASEVSDRTAM-DKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp STTCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEC--
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEeeec
Confidence 456899999999999 9999999999999999999863
No 45
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=78.31 E-value=2.1 Score=32.24 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=34.1
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+.+...++|+.+++ .+--++-+++-|+.-|+|++..
T Consensus 49 ~~~~~~~ela~~l~~-~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 49 ESPVNVKKVVTELAL-DTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp SSEEEHHHHHHHTTC-CTTTHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHHCC-ChhhHHHHHHHHHHCCCEEeec
Confidence 456999999999999 9999999999999999999863
No 46
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=77.81 E-value=2.7 Score=32.69 Aligned_cols=47 Identities=13% Similarity=0.337 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 17 LTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 17 Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+-++.+.+++. ++.+...++|+.||+ .+..+...++-|+.-|+|.+.
T Consensus 6 ~d~~il~~L~~--~~~~s~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKK--DSRLSMRELGRKIKL-SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHH--CSCCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEE
Confidence 34577888876 467999999999999 999999999999999999874
No 47
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=77.62 E-value=16 Score=26.96 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=33.4
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+.+...++|+.+++ .+-.++-+++-|+.-|+|++..
T Consensus 49 ~~~t~~ela~~l~~-s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 49 GEMESYQLANQACI-LRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp CSEEHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCC-CHhHHHHHHHHHHHCCCEEeec
Confidence 34899999999999 9999999999999999999873
No 48
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=77.26 E-value=2.4 Score=30.52 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=40.2
Q ss_pred cCcHHHHHHHHH--HHHhhCCCCeeeHHHHHhhhcccchhh-hhhHHHhhhhcccee
Q psy7686 11 EKSLGLLTTKFV--SLLQQAPEGVLHLKYAAENLEVKQKRR-IYDITNVLEGIGLIE 64 (243)
Q Consensus 11 ~~SL~~Lt~kFi--~ll~~~~~g~idL~~aa~~L~v~~KRR-iYDItNVLEgiglI~ 64 (243)
...+|.+.+-|. .++... ++.+...++|+.+++ .+-- ++-+++-|+.-|+|+
T Consensus 8 ~~~~g~~~~~l~~L~~l~~~-~~~~t~~eLa~~l~i-s~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 8 RLQFGHLIRILPTLLEFEKK-GYEPSLAEIVKASGV-SEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp GSBHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHCC-CHHHHHTTHHHHHHHTTSEE
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCCCHHHHHHHHCC-CchHHHHHHHHHHHHCCCee
Confidence 345566665543 333333 226899999999999 9999 999999999999999
No 49
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=77.15 E-value=6.9 Score=29.94 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=36.2
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+..+.. .+.+...++|+.|++ .+--++-+++.|+.-|+|++.
T Consensus 49 iL~~l~~--~~~~t~~ela~~l~i-s~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 49 AFLYVAL--FGPKKMKEIAEFLST-TKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHH--HCCBCHHHHHHHTTS-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEee
Confidence 3344444 235899999999999 999999999999999999986
No 50
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=76.41 E-value=3.3 Score=30.08 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=37.9
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+.++++++ .|.+++.++|+.|+| ..--|-=.+|.||.-|+|.|.
T Consensus 5 ~~Il~~L~~--~g~vsv~eLa~~l~V-S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLAL--RGRMEAAQISQTLNT-PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHH--SCSBCHHHHHHHTTC-CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEe
Confidence 345677765 688999999999999 876666678999999999998
No 51
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=76.28 E-value=3.7 Score=30.66 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=38.5
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+.++++++ .|.+++.++|+.|+| ..--|-=.++.||.-|+|.|..
T Consensus 5 ~~Il~~L~~--~g~vsv~eLA~~l~V-S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLAL--QGRMEAKQLSARLQT-PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHH--SCSEEHHHHHHHTTC-CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEe
Confidence 345677765 688999999999999 8766666789999999999984
No 52
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=76.26 E-value=3.2 Score=30.77 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=34.6
Q ss_pred CCeeeHHHHHhhh-cccchhhhhhHHHhhhhccceeccc
Q psy7686 30 EGVLHLKYAAENL-EVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 30 ~g~idL~~aa~~L-~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+|.+...++|+.+ ++ .+..++..++.||.-|||+|..
T Consensus 25 ~~~~~~~eLa~~l~~i-s~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNI-TQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp TCCBCHHHHHHHCTTS-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCCHHHHHHHhcCC-CHHHHHHHHHHHHHCCCEEEee
Confidence 5778999999999 99 9999999999999999999874
No 53
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=76.03 E-value=24 Score=26.93 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=34.0
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+.+...++|+.+++ .+--+.-+++-||.-|+|+|..
T Consensus 62 ~~~~t~~eLa~~l~~-~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 62 EDGINQESLSDYLKI-DKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp SCSEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEec
Confidence 356899999999999 9999999999999999999873
No 54
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=75.86 E-value=3.4 Score=31.42 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=37.0
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
.+.++.. .+.+.+.++|+.|++ .+--++-.++.|+..|+|++...
T Consensus 47 IL~~L~~--~~~~s~~eLa~~l~i-s~stvs~~L~~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 47 ITYALCQ--DEELCVCDIANILGV-TIANASHHLRTLYKQGVVNFRKE 91 (122)
T ss_dssp HHHHHHH--SSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEC--
T ss_pred HHHHHHH--CCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEE
Confidence 4455543 466899999999999 99999999999999999987643
No 55
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=75.49 E-value=3 Score=32.48 Aligned_cols=50 Identities=24% Similarity=0.378 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 14 LGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 14 L~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
|..+-++.+.+++. ++.+...++|+.||+ .+..+...++-|+.-|+|.+.
T Consensus 7 ld~~d~~il~~L~~--~~~~s~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 7 LDRVDMQLVKILSE--NSRLTYRELADILNT-TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEE
Confidence 44455678888876 577999999999999 999999999999999999874
No 56
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=75.49 E-value=4 Score=29.64 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
.+.++.. |.....++|+.+++ .+-.++--.+.|+.-|+|++...
T Consensus 28 Il~~L~~---~~~~~~ela~~l~i-s~~tvs~~L~~L~~~Glv~~~~~ 71 (102)
T 3pqk_A 28 LVCTLVE---GEFSVGELEQQIGI-GQPTLSQQLGVLRESGIVETRRN 71 (102)
T ss_dssp HHHHHHT---CCBCHHHHHHHHTC-CTTHHHHHHHHHHHTTSEEEECS
T ss_pred HHHHHHh---CCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEe
Confidence 4455543 55899999999999 99999999999999999987643
No 57
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=75.33 E-value=2.7 Score=34.02 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=40.0
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+..+...+++.+...++|+.+++ .+-.+.-+++-|+.-|+|++.
T Consensus 46 vL~~L~~~~~~~~t~~eLa~~l~i-s~~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIARKMGT-SKQNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhccCCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEec
Confidence 445566667888999999999999 999999999999999999986
No 58
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=75.16 E-value=3.2 Score=32.85 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 14 LGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 14 L~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
|...-++.+.+|+. ++.+...++|+.+|+ .+..++..++-|+.-|+|.+.
T Consensus 8 ld~~~~~il~~L~~--~~~~s~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 8 LDKTDIKILQVLQE--NGRLTNVELSERVAL-SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEeee
Confidence 44455678888876 456899999999999 999999999999999999974
No 59
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=75.05 E-value=3.9 Score=30.99 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=35.4
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.++.+.+.++|+.|++ .+--+.-+++.||.-|+|++..
T Consensus 28 ~~~~~s~~ela~~l~i-s~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKI-APSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TTSCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCcCHHHHHHHhCC-ChHHHHHHHHHHHHCCCEEecC
Confidence 4677999999999999 9999999999999999999875
No 60
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=74.67 E-value=14 Score=26.28 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=33.4
Q ss_pred CCeeeHHHH----HhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 30 EGVLHLKYA----AENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 30 ~g~idL~~a----a~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+.+...++ |+.+++ .+--++-+++-||.-|+|++..
T Consensus 20 ~~~~~~~el~~~la~~l~i-s~~tvs~~l~~Le~~gli~r~~ 60 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPM-STATFYDAKKFLIQEGFVKERQ 60 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCEEEEe
Confidence 456788888 999999 9999999999999999999864
No 61
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=74.12 E-value=14 Score=27.71 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=33.0
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+.+...++|+.|++ .+--++-+++.|+.-|+|++.
T Consensus 55 ~~~t~~ela~~l~~-~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 55 GDLTVGELSNKMYL-ACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp CSBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCC-CchhHHHHHHHHHHCCCeeec
Confidence 46899999999999 999999999999999999986
No 62
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=74.07 E-value=12 Score=30.91 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=19.5
Q ss_pred EEEEECCCCCeEEecCCCCCCceEEEEEec
Q psy7686 148 LMCLKAPYGTKLHVPSISTDENKIKLHVKS 177 (243)
Q Consensus 148 viaIkAP~~T~leVp~p~~~~~~yqi~LkS 177 (243)
.|+|..-+.|.+++-..++ +..++.+.
T Consensus 66 FIlV~T~k~t~I~ceISeD---~~~~~F~F 92 (155)
T 2aze_A 66 FIIVNTSKKTVIDCSISND---KFEYLFNF 92 (155)
T ss_dssp CEEEEEESSCCEEEEECTT---SSEEEEEE
T ss_pred EEEEEcCCCCEEEEEEecC---ccEEEEeC
Confidence 4889999999999987764 34445544
No 63
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=73.95 E-value=28 Score=29.07 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=37.0
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+.++. .+.+...++|+.|++ .+--+|-.++.|+.-|||++..
T Consensus 20 IL~~L~---~~~~s~~eLa~~l~i-s~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 20 ILFLLT---KRPYFVSELSRELGV-GQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHH---HSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH---hCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCceEEEe
Confidence 455554 356899999999999 9999999999999999999853
No 64
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=73.71 E-value=4.4 Score=33.12 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=41.4
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccc-eeccccCceEEec
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGL-IEKNNKNIIRWKA 75 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgigl-I~K~sKn~i~W~G 75 (243)
+.+.+|++. ++.+...++|+.|+| .+|-||-=++.|+..|+ |.+. ..-|.+..
T Consensus 25 ~Il~~L~~~-~~~~s~~eLa~~l~v-S~~Ti~rdi~~L~~~G~~I~~~-~~Gy~l~~ 78 (187)
T 1j5y_A 25 SIVRILERS-KEPVSGAQLAEELSV-SRQVIVQDIAYLRSLGYNIVAT-PRGYVLAG 78 (187)
T ss_dssp HHHHHHHHC-SSCBCHHHHHHHHTS-CHHHHHHHHHHHHHHTCCCEEE-TTEEECCT
T ss_pred HHHHHHHHc-CCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEE-CCEEEECC
Confidence 456666653 345899999999999 99999999999999999 8764 34455544
No 65
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=73.56 E-value=3.5 Score=31.44 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+.+.+++. ++.+...++|+.+|+ .+.-+...++-|+.-|+|.+.
T Consensus 7 ~~il~~L~~--~~~~~~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEK--DARTPFTEIAKKLGI-SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHH--CTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEecc
Confidence 456777765 456899999999999 999999999999999999875
No 66
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=73.31 E-value=3.3 Score=31.58 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=34.8
Q ss_pred HHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 23 SLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 23 ~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.++...+ +.+...++|+.+++ .+--+.-+++-|+.-|+|+|.
T Consensus 46 ~~l~~~~-~~~t~~eLa~~l~i-~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 46 VLACEQA-EGVNQRGVAATMGL-DPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp HHHHHST-TCCCSHHHHHHHTC-CHHHHHHHHHHHHTTTSEEC-
T ss_pred HHHHhCC-CCcCHHHHHHHHCC-CHhHHHHHHHHHHHCCCEEee
Confidence 3343433 34899999999999 999999999999999999986
No 67
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=73.21 E-value=3.5 Score=32.16 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 15 GLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 15 ~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
...-++.+.+|+. ++.+...++|+.+|+ .+..+...++-|+.-|+|.+.
T Consensus 7 d~~d~~il~~L~~--~~~~s~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 7 DNLDRGILEALMG--NARTAYAELAKQFGV-SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp CHHHHHHHHHHHH--CTTSCHHHHHHHHTS-CHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHH--cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHcCCcceE
Confidence 3445678888876 467999999999999 999999999999999999974
No 68
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=73.12 E-value=3.9 Score=31.82 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 14 LGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 14 L~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
|...-.+.+.+|+. ++.+...++|+.+|+ .+.-+...++-|+.-|+|.+.
T Consensus 5 ld~~~~~iL~~L~~--~~~~s~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 5 LDDIDRILVRELAA--DGRATLSELATRAGL-SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEE
Confidence 33344577888875 467999999999999 999999999999999999763
No 69
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=72.92 E-value=15 Score=28.19 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=34.1
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+.+...++|+.+++ .+--+.-+++-||.-|+|+|..
T Consensus 65 ~~~~t~~eLa~~l~~-~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 65 YGELTVGQLATLGVM-EQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp HSEEEHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEeeC
Confidence 357899999999999 9999999999999999999873
No 70
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=72.92 E-value=4.7 Score=28.16 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=38.4
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhccc---chhhhhhHHHhhhhccceeccc
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLEVK---QKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~v~---~KRRiYDItNVLEgiglI~K~s 67 (243)
..++.++.. .+.+...++|+.|+.. .+--+|-+++.|+.-|+|++..
T Consensus 12 ~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 446666665 5679999999999841 5788999999999999999874
No 71
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=72.90 E-value=3.5 Score=31.09 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=36.7
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+..+... +.+...++|+.+++ .+--+.-+++-|+.-|+|+|.
T Consensus 42 iL~~l~~~--~~~t~~eLa~~l~~-~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 42 VLEGIEAN--EPISQKEIALWTKK-DTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp HHHHHHHH--SSEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc--CCcCHHHHHHHHCC-CHhhHHHHHHHHHHCCCeecc
Confidence 34444432 67899999999999 999999999999999999986
No 72
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=72.48 E-value=4.9 Score=29.12 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=36.9
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc---cCceEEe
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN---KNIIRWK 74 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s---Kn~i~W~ 74 (243)
++.+++.++|+.||| ..--+..=++.||.-|+|.+.. .-.-+|.
T Consensus 22 g~~psv~EIa~~lgv-S~~TVrr~L~~Le~kG~I~R~~ggr~~~~~~~ 68 (77)
T 2jt1_A 22 GAPVKTRDIADAAGL-SIYQVRLYLEQLHDVGVLEKVNAGKGVPGLWR 68 (77)
T ss_dssp TSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEESCSSSSCCEEE
T ss_pred CCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCcEEecCCCCCcHHHHH
Confidence 688999999999999 8888889999999999999862 2345554
No 73
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=71.98 E-value=5.4 Score=29.42 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=34.2
Q ss_pred CCeeeHHHHHhhh-cccchhhhhhHHHhhhhccceeccc
Q psy7686 30 EGVLHLKYAAENL-EVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 30 ~g~idL~~aa~~L-~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.|.+...++|+.+ ++ .+..++-.++.||.-|+|++..
T Consensus 36 ~~~~~~~eL~~~l~gi-s~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGI-SEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp TSCEEHHHHHHHSTTC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCcCHHHHHHHcccC-CHHHHHHHHHHHHHCCCEEEee
Confidence 5779999999999 49 9999999999999999999874
No 74
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=71.94 E-value=3.7 Score=32.04 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 14 LGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 14 L~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
|...-++.+.+++. ++.+...++|+.||+ .+..+...++-|+.-|+|.+.
T Consensus 5 ld~~~~~il~~L~~--~~~~s~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 5 LDEIDKKIIKILQN--DGKAPLREISKITGL-AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHCS-CHHHHHHHHHHHHHHTSSCCC
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEE
Confidence 33445678888876 467999999999999 999999999999999999873
No 75
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=71.44 E-value=5.2 Score=30.60 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=33.4
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+...+.++|+.|++ .+--++-.++.|+..|+|.+..
T Consensus 58 ~~~s~~ela~~lgi-s~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 58 SELCVGDLAQAIGV-SESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp CCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEE
Confidence 56899999999999 9999999999999999998754
No 76
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=71.14 E-value=4.3 Score=30.57 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=36.3
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+..+...++ ...++|+.+++ .+--+.-+++-||.-|+|++..
T Consensus 42 iL~~l~~~~~---~~~~la~~l~~-~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 42 ILKATSEEPR---SMVYLANRYFV-TQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HHHHHHHSCE---EHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCC---CHHHHHHHHCC-ChhHHHHHHHHHHHCCCEEecc
Confidence 4455555433 99999999999 9999999999999999999873
No 77
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=70.70 E-value=4 Score=31.63 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+.+.+++. ++.+...++|+.||+ .+-.+...++-|+.-|+|++.
T Consensus 6 ~~il~~L~~--~~~~~~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 6 LRILKILQY--NAKYSLDEIAREIRI-PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHTT--CTTSCHHHHHHHHTS-CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCcEEEE
Confidence 456777764 567999999999999 999999999999999999973
No 78
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=70.68 E-value=29 Score=29.18 Aligned_cols=46 Identities=22% Similarity=0.170 Sum_probs=39.0
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
.+++|... ++.+.+.++|+.+++ .|--+|-+++.|+..|+|++...
T Consensus 11 iL~~l~~~-~~~~s~~ela~~~gl-~~stv~r~l~~L~~~G~v~~~~~ 56 (241)
T 2xrn_A 11 IMRALGSH-PHGLSLAAIAQLVGL-PRSTVQRIINALEEEFLVEALGP 56 (241)
T ss_dssp HHHHHHTC-TTCEEHHHHHHHTTS-CHHHHHHHHHHHHTTTSEEECGG
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEeCC
Confidence 45556543 346899999999999 99999999999999999999754
No 79
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=70.66 E-value=5.8 Score=30.12 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=36.2
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceec
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEK 65 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K 65 (243)
.+..+... +.+...++|+.+++ .+-.+.-+++-|+.-|+|++
T Consensus 46 iL~~l~~~--~~~t~~eLa~~l~~-~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 46 MINVIYST--PGISVADLTKRLII-TGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHC--CCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEe
Confidence 44455543 45999999999999 99999999999999999998
No 80
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=70.28 E-value=16 Score=27.58 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=33.7
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
..+.+...++|+.+++ .+-.+.-+++-|+.-|+|++.
T Consensus 48 ~~~~~t~~eLa~~l~~-~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 48 SIEALTVGQITEKQGV-NKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp HHSCBCHHHHHHHHCS-CSSHHHHHHHHHHHTTSEEC-
T ss_pred HcCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEee
Confidence 3567999999999999 999999999999999999984
No 81
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=70.26 E-value=4.7 Score=30.10 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=33.7
Q ss_pred CeeeHHHHHhhh-cccchhhhhhHHHhhhhccceeccc
Q psy7686 31 GVLHLKYAAENL-EVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 31 g~idL~~aa~~L-~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
|.+...++|+.| ++ .+.-++..++.||.-|+|++..
T Consensus 34 ~~~~~~eLa~~l~~i-s~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 34 GTKRNGELMRALDGI-TQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp SCBCHHHHHHHSTTC-CHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCHHHHHHHhccC-CHHHHHHHHHHHHHCCCEEEee
Confidence 568999999999 99 9999999999999999999873
No 82
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=70.17 E-value=4.7 Score=34.85 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHH-hhhhccceeccccC
Q psy7686 14 LGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITN-VLEGIGLIEKNNKN 69 (243)
Q Consensus 14 L~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItN-VLEgiglI~K~sKn 69 (243)
+..+-++++..+....++.+++..+|+.||+ .++.+|+... .|...|+|.+..+.
T Consensus 261 l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~-~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 261 FDAMDLRYLELLTAAKQKPIGLASIAAALSE-DENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp CCHHHHHHHHHHHHSCSCCBCHHHHHHHTTC-CHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHhCC-CHHHHHHHHhHHHHHcCceecCCCc
Confidence 4445567777776666678999999999999 9999999998 89999999887543
No 83
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=69.78 E-value=5.3 Score=29.55 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+..+.. .+.+...++|+.+++ .+--++-+++-|+.-|+|++.
T Consensus 38 iL~~l~~--~~~~~~~ela~~l~~-~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 38 VIQVLAK--SGKVSMSKLIENMGC-VPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHH--SCSEEHHHHHHHCSS-CCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCcCHHHHHHHHCC-ChhHHHHHHHHHHHCCCeeec
Confidence 4445544 446999999999999 999999999999999999986
No 84
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=69.55 E-value=4.5 Score=30.56 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=34.9
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
..+.+...++|+.+++ .+-.+.-+++-|+.-|+|+|.
T Consensus 47 ~~~~~t~~eLa~~l~~-~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFL-DSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp TTCEEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HcCCcCHHHHHHHHCC-ChhhHHHHHHHHHHCCCeEec
Confidence 3678999999999999 999999999999999999987
No 85
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=69.51 E-value=4.1 Score=35.05 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=39.0
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc-CceEEecc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK-NIIRWKAL 76 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK-n~i~W~G~ 76 (243)
++.+.+.++|+.+|+ .|=-+|-+++.|+..|++++... ..|. .|.
T Consensus 19 ~~~lsl~eia~~lgl-~ksT~~RlL~tL~~~G~v~~~~~~~~Y~-lG~ 64 (260)
T 3r4k_A 19 RLEIGLSDLTRLSGM-NKATVYRLMSELQEAGFVEQVEGARSYR-LGP 64 (260)
T ss_dssp BSEEEHHHHHHHHCS-CHHHHHHHHHHHHHTTSEEECSSSSEEE-ECT
T ss_pred CCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEcCCCCcEE-cCH
Confidence 578999999999999 99999999999999999999765 4454 453
No 86
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=69.46 E-value=14 Score=27.86 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=34.0
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+.+...++|+.+++ .+--+.-+++-|+.-|+|++..
T Consensus 59 ~~~~t~~ela~~l~~-s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 59 TDERSVSEIGERLYL-DSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp SCSEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCcCHHHHHHHhCC-CcccHHHHHHHHHHCCCEeecC
Confidence 456899999999999 9999999999999999999863
No 87
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=69.29 E-value=33 Score=25.56 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=35.6
Q ss_pred HHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 22 VSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 22 i~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+..+...+ .+...++|+.+++ .+-.++-+++-|+.-|+|++.
T Consensus 37 L~~l~~~~--~~t~~eLa~~l~~-~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 37 LYTLATEG--SRTQKHIGEKWSL-PKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp HHHHHHHC--SBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHCC--CCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEeec
Confidence 34444433 3999999999999 999999999999999999986
No 88
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=69.21 E-value=5.7 Score=31.76 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=39.8
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceE
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIR 72 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~ 72 (243)
+.+.+|. .+.+...++|+.|++ .+--++--+++|+.-|||++.......
T Consensus 62 ~IL~~L~---~~~~t~~eLa~~lgl-s~stvs~hL~~L~~aGlV~~~~~Gr~~ 110 (151)
T 3f6v_A 62 RLVQLLT---SGEQTVNNLAAHFPA-SRSAISQHLRVLTEAGLVTPRKDGRFR 110 (151)
T ss_dssp HHHHHGG---GCCEEHHHHHTTSSS-CHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred HHHHHHH---hCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEecCCEE
Confidence 3455554 466899999999999 999999999999999999986544333
No 89
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=69.21 E-value=5.4 Score=29.54 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=36.8
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+..+.. .+.+...++|+.+++ .+--++-+++-|+.-|+|++.
T Consensus 34 iL~~l~~--~~~~~~~ela~~l~~-s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 34 CLLRIHR--EPGIKQDELATFFHV-DKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHH--STTCBHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEee
Confidence 3444444 356899999999999 999999999999999999985
No 90
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=69.20 E-value=6.8 Score=29.83 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=33.9
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+.+...++|+.+++ .+--++-+++-|+.-|+|++.
T Consensus 55 ~~~~t~~ela~~l~i-~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 55 NDAMMITRLAKLSLM-EQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp CSCBCHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEec
Confidence 456899999999999 999999999999999999986
No 91
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=68.87 E-value=16 Score=28.19 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=36.0
Q ss_pred ceEEeccCCC---Cchh-hhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7686 70 IIRWKALKNK---NEEE-YDLEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQ 123 (243)
Q Consensus 70 ~i~W~G~~~~---~~~~-~~~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ 123 (243)
-+.|.|.+-. +..+ -.-..++...|+..+..|+.....+...|..+.+.|+.+.
T Consensus 72 V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 72 VIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899997655 1110 0124556777777777777777777777777777777664
No 92
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=68.84 E-value=4.4 Score=30.03 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=33.0
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+.+...++|+.+++ .+--++-+++-|+.-|+|++.
T Consensus 51 ~~~t~~ela~~l~~-~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 51 GPCPQNQLGRLTAM-DAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SSBCHHHHHHHTTC-CHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEee
Confidence 46899999999999 999999999999999999986
No 93
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=68.76 E-value=8.1 Score=32.76 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=40.3
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceE
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIR 72 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~ 72 (243)
.+++|... ++.+.+.++|+.+++ .|--+|-+++.|+..|+|++.....|.
T Consensus 13 iL~~l~~~-~~~~~~~ela~~~gl-~~stv~r~l~~L~~~G~v~~~~~~~Y~ 62 (249)
T 1mkm_A 13 ILDFIVKN-PGDVSVSEIAEKFNM-SVSNAYKYMVVLEEKGFVLRKKDKRYV 62 (249)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEECTTSCEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCcEEECCCCcEE
Confidence 45566553 346899999999999 999999999999999999997333343
No 94
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=68.71 E-value=12 Score=27.24 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhCCCCeeeHHHHHhhhcccch-hhhhhHHHhhhhccceeccccCceEEe
Q psy7686 16 LLTTKFVSLLQQAPEGVLHLKYAAENLEVKQK-RRIYDITNVLEGIGLIEKNNKNIIRWK 74 (243)
Q Consensus 16 ~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~K-RRiYDItNVLEgiglI~K~sKn~i~W~ 74 (243)
..-.+.+.+|+. .|.....++|+.|++ .+ |-+==..+.||.=|+|++.+.+.-.|.
T Consensus 11 ~~~~~IL~~Lk~--~g~~ta~eiA~~Lgi-t~~~aVr~hL~~Le~eGlV~~~~~gRP~w~ 67 (79)
T 1xmk_A 11 EIKEKICDYLFN--VSDSSALNLAKNIGL-TKARDINAVLIDMERQGDVYRQGTTPPIWH 67 (79)
T ss_dssp HHHHHHHHHHHH--TCCEEHHHHHHHHCG-GGHHHHHHHHHHHHHTTSEEEECSSSCEEE
T ss_pred hHHHHHHHHHHH--cCCcCHHHHHHHcCC-CcHHHHHHHHHHHHHCCCEEecCCCCCCeE
Confidence 455778888887 456889999999999 55 366667788999999998755544774
No 95
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=68.55 E-value=6.1 Score=30.14 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=35.7
Q ss_pred HHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 22 VSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 22 i~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+..+.. .+.+...++|+.+++ .+--+.-+++-|+.-|+|++.
T Consensus 47 L~~l~~--~~~~~~~eLa~~l~~-~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 47 MLTLWE--ENPQTLNSIGRHLDL-SSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp HHHHHH--SSSEEHHHHHHHHTC-CHHHHHHHHHHHHHHTSEEC-
T ss_pred HHHHHH--CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEeeC
Confidence 344444 366899999999999 999999999999999999987
No 96
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=68.49 E-value=3.9 Score=30.90 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=36.5
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+.+.+|.. +.....++|+.|++ .+.-++-.++.|+..|+|++..
T Consensus 25 ~IL~~L~~---~~~~~~eLa~~lgi-s~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 25 RILVALLD---GVCYPGQLAAHLGL-TRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHHHHT---TCCSTTTHHHHHSS-CHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHHHHHc---CCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCceEEEE
Confidence 35555653 44788999999999 9999999999999999998763
No 97
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=68.44 E-value=6 Score=30.52 Aligned_cols=53 Identities=11% Similarity=0.178 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhCCCCeeeHHHHHhhh--cccchhhhhhHHHhhhhccceeccccC
Q psy7686 14 LGLLTTKFVSLLQQAPEGVLHLKYAAENL--EVKQKRRIYDITNVLEGIGLIEKNNKN 69 (243)
Q Consensus 14 L~~Lt~kFi~ll~~~~~g~idL~~aa~~L--~v~~KRRiYDItNVLEgiglI~K~sKn 69 (243)
+...-++.+.+|+. +|.+...++|+.+ ++ .+-.+-.-+++|+.-|||++....
T Consensus 11 md~~d~~IL~~L~~--~g~~s~~eLA~~l~~gi-S~~aVs~rL~~Le~~GLV~~~~rg 65 (111)
T 3b73_A 11 MTIWDDRILEIIHE--EGNGSPKELEDRDEIRI-SKSSVSRRLKKLADHDLLQPLANG 65 (111)
T ss_dssp CCHHHHHHHHHHHH--HSCBCHHHHHTSTTCCS-CHHHHHHHHHHHHHTTSEEECSTT
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCEEecCCc
Confidence 33444778888875 4689999999999 99 888899999999999999987544
No 98
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=68.26 E-value=5.3 Score=32.34 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 14 LGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 14 L~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
|..+-++.+.+++. ++.+...++|+.||+ .+--+...++-|+.-|+|.+.
T Consensus 15 ld~~d~~IL~~L~~--~~~~s~~eLA~~lgl-S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 15 LDDLDRNILRLLKK--DARLTISELSEQLKK-PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEee
Confidence 44555788888876 467999999999999 999999999999999999864
No 99
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=67.64 E-value=4.2 Score=35.29 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=37.6
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEE
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRW 73 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W 73 (243)
+.+++.++|+++++ ..++++-+..+|.++|++++...+.|.-
T Consensus 40 ~~~t~~ela~~~~~-~~~~l~r~Lr~L~~~g~l~~~~~~~y~~ 81 (334)
T 2ip2_A 40 GIDSDETLAAAVGS-DAERIHRLMRLLVAFEIFQGDTRDGYAN 81 (334)
T ss_dssp TCCSHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCCCHHHHHHHhCc-CHHHHHHHHHHHHhCCceEecCCCeEec
Confidence 67999999999999 9999999999999999999876665654
No 100
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=67.53 E-value=6.1 Score=30.21 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
++.++... .+.+...++|+.|++ .+--+.-+++-|+.-|+|++.
T Consensus 52 iL~~L~~~-~~~~~~~ela~~l~i-~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 52 AMAQLARN-PDGLSMGKLSGALKV-TNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp HHHHHHHC-TTCEEHHHHHHHCSS-CCSCHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHc-CCCCCHHHHHHHHCC-ChhhHHHHHHHHHHCCCEEee
Confidence 34444222 456999999999999 999999999999999999986
No 101
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=67.38 E-value=6.3 Score=34.13 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 17 LTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 17 Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
...+.+..+.. ++.+.+.++|+.|++ .|.-++-+++.|+.-|+|++...
T Consensus 153 ~~~~IL~~L~~--~~~~s~~eLA~~lgl-sksTv~r~L~~Le~~GlV~r~~r 201 (244)
T 2wte_A 153 EEMKLLNVLYE--TKGTGITELAKMLDK-SEKTLINKIAELKKFGILTQKGK 201 (244)
T ss_dssp HHHHHHHHHHH--HTCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEeCC
Confidence 34456666654 345899999999999 99999999999999999999743
No 102
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=67.24 E-value=6.9 Score=30.05 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=33.6
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+.+...++|+.|++ .+--++-+++-|+.-|+|++.
T Consensus 64 ~~~~t~~ela~~l~i-s~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVV-EQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp SCSEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCC-ChhHHHHHHHHHHHCCCEEec
Confidence 356899999999999 999999999999999999986
No 103
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=67.16 E-value=9.2 Score=27.87 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=38.6
Q ss_pred HHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc--ccCceEEec
Q psy7686 18 TTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN--NKNIIRWKA 75 (243)
Q Consensus 18 t~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~--sKn~i~W~G 75 (243)
-+.||.+++. ..++.|.++|..+++ ..--.-+=++-|+.-|.+.=. .+.+|.++.
T Consensus 9 l~~Fi~yIk~--~Kvv~LedLA~~F~l-~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 9 LTEFINYIKK--SKVVLLEDLAFQMGL-RTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHHH--CSEECHHHHHHHHCS-CHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHHH--cCeeeHHHHHHHhCC-ChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 3789999997 678999999999999 433334556667777766543 234455444
No 104
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=67.11 E-value=5.6 Score=29.92 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=33.2
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+..+... +.+...++|+.+++ .+--+.-+++-|+.-|+|++.
T Consensus 42 vL~~l~~~--~~~t~~eLa~~l~~-~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 42 VLKLIDEQ--RGLNLQDLGRQMCR-DKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp HHHHHHHT--TTCCHHHHHHHHC----CHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHhC--CCcCHHHHHHHhCC-CHHHHHHHHHHHHHCCCEeec
Confidence 44455443 45899999999999 999999999999999999987
No 105
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.09 E-value=5.6 Score=29.67 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=34.9
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.++.+...++|+.+++ .+--++-+++-|+.-|+|++..
T Consensus 49 ~~~~~t~~~la~~l~~-s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGV-EGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp CSSCCBHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCCCCHHHHHHHhCC-ChhhHHHHHHHHHHCCCeeecC
Confidence 4567899999999999 9999999999999999999863
No 106
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=66.74 E-value=5.8 Score=30.85 Aligned_cols=53 Identities=15% Similarity=0.284 Sum_probs=41.5
Q ss_pred cCcHHHHHHHH----HHHHhhCCCCeeeHHHHHhhh-cccchhhhhhHHHhhhhccceeccc
Q psy7686 11 EKSLGLLTTKF----VSLLQQAPEGVLHLKYAAENL-EVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 11 ~~SL~~Lt~kF----i~ll~~~~~g~idL~~aa~~L-~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
...|..+..++ +..|. .|.+...++++.| ++ .+.-+...++.||.-|||+|..
T Consensus 26 ~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~l~gi-s~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 26 REVLKHVTSRWGVLILVALR---DGTHRFSDLRRXMGGV-SEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp HHHHHHHHSHHHHHHHHHGG---GCCEEHHHHHHHSTTC-CHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHcCCcHHHHHHHHH---cCCCCHHHHHHHhccC-CHHHHHHHHHHHHHCCcEEEEe
Confidence 34455665443 22332 5779999999999 79 9999999999999999999874
No 107
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=66.49 E-value=8.2 Score=24.31 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=22.5
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy7686 89 SKLIELRDEISDMRNHEAVIDEHIRKC 115 (243)
Q Consensus 89 ~~~~~Lk~El~~L~~~E~~LD~~I~~~ 115 (243)
.+....+++|.+|+.+-..|++.|.++
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 455678899999999999999998764
No 108
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=66.24 E-value=5.4 Score=29.91 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=36.2
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
..+..+.. ++ +...++|+.+++ .+=-+.-+++-|+.-|+|++..
T Consensus 42 ~iL~~l~~--~~-~t~~eLa~~l~~-s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 42 HILMLLSE--ES-LTNSELARRLNV-SQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHTT--CC-CCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHh--CC-CCHHHHHHHHCC-CHHHHHHHHHHHHHCCCeEecc
Confidence 34455543 45 999999999999 9999999999999999999863
No 109
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=66.18 E-value=8.2 Score=30.40 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=38.1
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+-++...+++.+...++|+.+++ ..+-+..|...|...|||+...
T Consensus 19 ~L~~La~~~~~~~~~~~iA~~~~i-~~~~l~kil~~L~~~Glv~s~r 64 (149)
T 1ylf_A 19 ILSILKNNPSSLCTSDYMAESVNT-NPVVIRKIMSYLKQAGFVYVNR 64 (149)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCcEEEcc
Confidence 334444446678999999999999 9999999999999999998653
No 110
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=65.80 E-value=5.9 Score=29.42 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=33.5
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+.+...++|+.+++ .+--++-+++-|+.-|+|++..
T Consensus 44 ~~~~~~ela~~l~i-s~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 44 APLHQLALQERLQI-DRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp CSBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEecC
Confidence 45899999999999 9999999999999999999873
No 111
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=65.58 E-value=7.7 Score=29.27 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=36.4
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+..+.. .+.+...++|+.+++ .+--+.-+++-|+.-|+|++.
T Consensus 45 iL~~l~~--~~~~t~~ela~~l~~-~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 45 ILEGLSL--TPGATAPQLGAALQM-KRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp HHHHHHH--STTEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHh--CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCeeec
Confidence 3344444 346899999999999 999999999999999999986
No 112
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=65.40 E-value=40 Score=25.19 Aligned_cols=44 Identities=25% Similarity=0.387 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+..+.. .+.+...++|+.+++ .+-.++-+++-|+.-|+|++..
T Consensus 42 iL~~l~~--~~~~t~~ela~~l~~-s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 42 VLASLKK--HGSLKVSEIAERMEV-KPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp HHHHHHH--HSEEEHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEeecC
Confidence 3344443 456899999999999 9999999999999999999863
No 113
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=65.35 E-value=37 Score=25.23 Aligned_cols=75 Identities=7% Similarity=0.124 Sum_probs=44.4
Q ss_pred chhhhhhHHHhhhhccceeccccCceEEeccCCC-Cchh--hhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7686 46 QKRRIYDITNVLEGIGLIEKNNKNIIRWKALKNK-NEEE--YDLEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNI 122 (243)
Q Consensus 46 ~KRRiYDItNVLEgiglI~K~sKn~i~W~G~~~~-~~~~--~~~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l 122 (243)
+++++-++.+=|+.+. - ..+.|+=+|.--+ .+.. ...+..+...+..+++.|+.....+..-+..++..|..+
T Consensus 35 ~~~e~~~~~~eL~~l~---~-d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 35 ELTEAKKALDEIESLP---D-DAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHTSC---T-TCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---C-CcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555543 2 3345666674433 1111 123455666777777777777777777777777777766
Q ss_pred hh
Q psy7686 123 QE 124 (243)
Q Consensus 123 ~e 124 (243)
..
T Consensus 111 ~~ 112 (117)
T 2zqm_A 111 LR 112 (117)
T ss_dssp HS
T ss_pred Hc
Confidence 53
No 114
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=65.29 E-value=11 Score=28.80 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=42.7
Q ss_pred CcHHH-HHHHHHHHHhh---CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 12 KSLGL-LTTKFVSLLQQ---APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 12 ~SL~~-Lt~kFi~ll~~---~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
.++.. +...+...+.. .|+..+ +..++|+.|+| .+--+-.....|+.-|+|++...
T Consensus 12 ~~~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~v-Sr~tvr~Al~~L~~~G~i~~~~g 72 (125)
T 3neu_A 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAV-NPNTVSRAYQELERAGYIYAKRG 72 (125)
T ss_dssp SCHHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEETT
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCeEEEecC
Confidence 34443 44445555543 466677 59999999999 99999999999999999998743
No 115
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=64.76 E-value=12 Score=27.87 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=33.6
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+.+...++|+.+++ .+--++-+++-|+.-|+|++..
T Consensus 53 ~~~~~~~la~~l~~-~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 53 ETLTVKKMGEQLYL-DSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp SEEEHHHHHHTTTC-CHHHHHHHHHHHHHHTSEECCB
T ss_pred CCCCHHHHHHHHCC-CcCcHHHHHHHHHHCCCEEecc
Confidence 47899999999999 9999999999999999999863
No 116
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=64.52 E-value=28 Score=25.51 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=41.1
Q ss_pred chhhhhhHHHhhhhccceeccccCceEEeccCCC-Cchh--hhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7686 46 QKRRIYDITNVLEGIGLIEKNNKNIIRWKALKNK-NEEE--YDLEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNI 122 (243)
Q Consensus 46 ~KRRiYDItNVLEgiglI~K~sKn~i~W~G~~~~-~~~~--~~~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l 122 (243)
+++..-++.+=|+.+ .- ..+.|+-+|.--+ .+.. ...+..+...+..+++.|+.....+..-+..++..|..+
T Consensus 30 ~~~e~~~~~~EL~~l---~~-d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 30 QINETQKALEELSRA---AD-DAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHS---CT-TCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC---CC-CchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566655555554 32 2335666664433 1111 123455666677777777777777777777666666554
No 117
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=64.35 E-value=4.5 Score=35.21 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=42.4
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEe
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWK 74 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~ 74 (243)
..+.+. +|.+++.++|+++++ ..+.++-+...|.++|++++..+..|.-.
T Consensus 30 lf~~l~---~g~~t~~elA~~~~~-~~~~l~rlLr~l~~~gl~~~~~~~~y~~t 79 (332)
T 3i53_A 30 VADHIA---AGHRTAAEIASAAGA-HADSLDRLLRHLVAVGLFTRDGQGVYGLT 79 (332)
T ss_dssp HHHHHH---TTCCBHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEECTTSBEEEC
T ss_pred hHHHHh---cCCCCHHHHHHHHCc-CHHHHHHHHHHHHhCCcEEecCCCeEEcC
Confidence 445554 368999999999999 99999999999999999999877776653
No 118
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=64.15 E-value=6.8 Score=31.72 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 14 LGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 14 L~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
|..+-++.+.+|+. ++.+...++|+.||+ .+..+..-++-|+.-|+|++.
T Consensus 25 ld~~d~~IL~~L~~--~~~~s~~eLA~~lgl-S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 25 LDEIDKKIIKILQN--DGKAPLREISKITGL-AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSSCCC
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEee
Confidence 44556788888886 567999999999999 999999999999999999873
No 119
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=63.99 E-value=6 Score=28.93 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhh---CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 14 LGLLTTKFVSLLQQ---APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 14 L~~Lt~kFi~ll~~---~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
...+...+...+.. .++..+ ...++|+.|+| .+--+...++.|+.-|+|++...
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~v-Sr~tvr~al~~L~~~Gli~~~~g 70 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGV-AAKTVSRALAVLKSEGLVSSRGA 70 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS-CTTHHHHHTTTTTTSSCCEEETT
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEeCC
Confidence 34455555554443 356667 99999999999 99999999999999999998743
No 120
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=63.88 E-value=15 Score=28.39 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=39.4
Q ss_pred HHHHHHHhh---CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 19 TKFVSLLQQ---APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 19 ~kFi~ll~~---~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
..+...+.. .|+..+ +..++|+.|+| .+--+-...+.|+.-|+|+....
T Consensus 11 ~~i~~~I~~g~l~~G~~LPse~~La~~~gv-Sr~tVr~Al~~L~~~Gli~~~~g 63 (129)
T 2ek5_A 11 SLIEDSIVDGTLSIDQRVPSTNELAAFHRI-NPATARNGLTLLVEAGILYKKRG 63 (129)
T ss_dssp HHHHHHHHTTSSCTTSCBCCHHHHHHHTTC-CHHHHHHHHHHHHTTTSEEEETT
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCcEEEecC
Confidence 334444433 467777 89999999999 99999999999999999998744
No 121
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=63.70 E-value=5.5 Score=37.57 Aligned_cols=23 Identities=0% Similarity=0.043 Sum_probs=14.8
Q ss_pred ceEEEEEecCCCCCCeEEEEecCCCC
Q psy7686 169 NKIKLHVKSSHPEEPVNILLLDTEPK 194 (243)
Q Consensus 169 ~~yqi~LkS~~~~GpI~V~L~~~~~~ 194 (243)
+-|.|+..... .|+.|| |..+..
T Consensus 165 GvY~I~p~~~~--~pf~V~-CDm~t~ 187 (409)
T 1m1j_C 165 GLYFIKPQKAK--QSFLVY-CEIDTY 187 (409)
T ss_dssp EEEEECCTTCS--SCEEEE-EEECTT
T ss_pred eeEEEecCCCC--CcEEEE-EeeccC
Confidence 56777765545 678776 766553
No 122
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=63.40 E-value=12 Score=28.84 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=33.4
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
+.+...++|+.|+| .+--+--+++.||.-|+|++...
T Consensus 53 ~~~~~~~la~~l~v-s~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 53 GEARQVDMAARLGV-SQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp SCCCHHHHHHHHTS-CHHHHHHHHHHHHHTTCEEEETT
T ss_pred CCcCHHHHHHHhCc-CHHHHHHHHHHHHHCCCEEEecC
Confidence 45789999999999 99999999999999999998743
No 123
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=62.72 E-value=6 Score=35.30 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=38.7
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCc-eEE
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNI-IRW 73 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~-i~W 73 (243)
++|.+++.++|+++++ ..|.++-+..+|.++|++++...+. |.-
T Consensus 68 ~~g~~t~~eLA~~~g~-~~~~l~rlLr~L~~~g~l~~~~~~~~y~~ 112 (369)
T 3gwz_A 68 QEGPRTATALAEATGA-HEQTLRRLLRLLATVGVFDDLGHDDLFAQ 112 (369)
T ss_dssp TTSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSSEECSSTTEEEC
T ss_pred cCCCCCHHHHHHHHCc-CHHHHHHHHHHHHhCCCEEEeCCCceEec
Confidence 3678999999999999 9999999999999999999976665 543
No 124
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=62.66 E-value=6.6 Score=33.56 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=36.1
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceE
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIR 72 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~ 72 (243)
++.+.+.++|+.+++ .|--+|-+++.|+..|+|++.+ ..|.
T Consensus 27 ~~~~~~~eia~~~gl-~~stv~r~l~~L~~~G~v~~~~-~~Y~ 67 (257)
T 2g7u_A 27 RPNPTLAELATEAGL-SRPAVRRILLTLQKLGYVAGSG-GRWS 67 (257)
T ss_dssp CSSCBHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred CCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEeCC-CEEE
Confidence 467899999999999 9999999999999999999974 4443
No 125
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=62.20 E-value=7.7 Score=33.36 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=38.1
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEeccC
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKALK 77 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~G~~ 77 (243)
.+.+.+.++|+.+|+ .|--+|-+++.|+..|++++.+ ..|. .|..
T Consensus 34 ~~~~~~~eia~~~gl-~~stv~r~l~tL~~~G~v~~~~-~~Y~-Lg~~ 78 (265)
T 2ia2_A 34 NQRRTLSDVARATDL-TRATARRFLLTLVELGYVATDG-SAFW-LTPR 78 (265)
T ss_dssp CSSEEHHHHHHHHTC-CHHHHHHHHHHHHHHTSEEESS-SEEE-ECGG
T ss_pred CCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEecC-CEEE-EcHH
Confidence 466999999999999 9999999999999999999973 4454 4543
No 126
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=62.19 E-value=9.9 Score=28.36 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHh
Q psy7686 17 LTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNV 56 (243)
Q Consensus 17 Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNV 56 (243)
+..+++.++.......+++.++|+.+++ .+|.|.-+..-
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~lA~~~~~-S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLM-SPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCc-CHHHHHHHHHH
Confidence 5678899999888889999999999999 99988877654
No 127
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=61.82 E-value=9.3 Score=30.88 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=39.4
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+.+.+|...+++.+...++|+.+++ .+.-+.-|+.-|..-|+|+-.
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~i-s~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHL-NPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTS-CGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEee
Confidence 4445555556788999999999999 999999999999999999765
No 128
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=61.41 E-value=11 Score=27.92 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
..++.++.++.+.-++..++|.++++ .+.-+-=|+.-||.-|||.+.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l-~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNL-PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEe
Confidence 45777787765556999999999999 999999999999999999953
No 129
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=61.12 E-value=8.2 Score=30.63 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=40.4
Q ss_pred HHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 18 TTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 18 t~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
-++.+.+|+. ++.+...++|+.||+ ..--+..-++-|+.-|+|.+.
T Consensus 5 d~~il~~L~~--~~~~s~~~la~~lg~-s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 5 DRKILRILQE--DSTLAVADLAKKVGL-STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHTT--CSCSCHHHHHHHHTC-CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHH--CCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeeec
Confidence 3567788875 678999999999999 999999999999999999964
No 130
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=61.03 E-value=6 Score=34.84 Aligned_cols=43 Identities=7% Similarity=0.040 Sum_probs=37.6
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEE
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRW 73 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W 73 (243)
.+|.+++.++|+++++ ..|.++-+..+|.++|++++ ..+.|.=
T Consensus 52 ~~g~~t~~elA~~~g~-~~~~l~rlLr~l~~~g~l~~-~~~~y~~ 94 (348)
T 3lst_A 52 VDGPRTPAELAAATGT-DADALRRVLRLLAVRDVVRE-SDGRFAL 94 (348)
T ss_dssp TTSCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEE-ETTEEEE
T ss_pred hCCCCCHHHHHHHhCc-CHHHHHHHHHHHHhCCCEEe-cCCEEec
Confidence 3578999999999999 99999999999999999999 5555543
No 131
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=60.68 E-value=19 Score=27.64 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=40.6
Q ss_pred HHHHHHHHhh---CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceeccccC
Q psy7686 18 TTKFVSLLQQ---APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKN 69 (243)
Q Consensus 18 t~kFi~ll~~---~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn 69 (243)
...+...+.. .|+..+ +..++|+.||| .+--+-...+.|+.-|+|++....
T Consensus 17 ~~~l~~~I~~g~~~~G~~lPse~~La~~~~v-Sr~tvr~Al~~L~~~Gli~~~~g~ 71 (126)
T 3by6_A 17 VDRIKNEVATDVLSANDQLPSVRETALQEKI-NPNTVAKAYKELEAQKVIRTIPGK 71 (126)
T ss_dssp HHHHHHHHHTTSSCTTCEECCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHhCCCCCCCcCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEecCC
Confidence 3444444443 467778 99999999999 999999999999999999987443
No 132
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=60.66 E-value=6 Score=34.06 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=36.5
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEE
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRW 73 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W 73 (243)
+|.+++.++|+++++ ..++++-+.++|.+.|++++. .+.|.-
T Consensus 37 ~~~~t~~ela~~~~~-~~~~l~r~L~~L~~~g~l~~~-~~~y~~ 78 (335)
T 2r3s_A 37 QGIESSQSLAQKCQT-SERGMRMLCDYLVIIGFMTKQ-AEGYRL 78 (335)
T ss_dssp TSEECHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred cCCCCHHHHHHHhCC-CchHHHHHHHHHHhcCCeEec-CCEEec
Confidence 478999999999999 999999999999999999873 455543
No 133
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=60.46 E-value=7.7 Score=28.44 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=33.6
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
++..++..++|+.||+ .+=-+...++.|+.-|+|++.
T Consensus 30 ~g~~~s~~eLa~~lgv-s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNI-KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HCSCBCHHHHHHTTTS-CHHHHHHHHHHHHHHTSCEEE
T ss_pred cCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEE
Confidence 3445899999999999 999999999999999999876
No 134
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=59.99 E-value=9.3 Score=27.90 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhc
Q psy7686 17 LTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGI 60 (243)
Q Consensus 17 Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgi 60 (243)
+..+++.++.+.....+++.++|+.+|+ .+|.|+-+..-.-|+
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~-S~~~l~r~fk~~~G~ 48 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDFHI-NAVYLGQLFQKEMGE 48 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTS-CHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCc-CHHHHHHHHHHHHCc
Confidence 4567888888877788999999999999 999988877655444
No 135
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=59.83 E-value=5.5 Score=31.39 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=44.3
Q ss_pred CCCcCcHHHHHHHH----HHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 8 SRFEKSLGLLTTKF----VSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 8 ~R~~~SL~~Lt~kF----i~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+.....|+.+..+. +..+. .|.....++++.|++ .+.-+...++.||.-|||+|..
T Consensus 12 c~~~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~lgi-s~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 12 CPVARPLDVIGDGWSMLIVRDAF---EGLTRFGEFQKSLGL-AKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp CTTTTTHHHHCSSSHHHHHHHHH---TTCCSHHHHHHHHCC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcHHHHHHHhCCchHHHHHHHHH---hCCCCHHHHHHHhCC-CHHHHHHHHHHHHHCCCEEEEe
Confidence 44556677776442 23332 567899999999999 9999999999999999999974
No 136
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=59.76 E-value=6.6 Score=34.52 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=39.5
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccC--ceEE
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKN--IIRW 73 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn--~i~W 73 (243)
.++.|. +|.+++.++|+.+++ ..+.++-+..+|.+.|++++...+ .|.-
T Consensus 41 i~~~l~---~~~~t~~eLA~~~g~-~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~ 91 (374)
T 1qzz_A 41 LVDHLL---AGADTLAGLADRTDT-HPQALSRLVRHLTVVGVLEGGEKQGRPLRP 91 (374)
T ss_dssp HHHHHH---TTCCSHHHHHHHHTC-CHHHHHHHHHHHHHTTSEECCCC-CCCCEE
T ss_pred hHHHHh---CCCCCHHHHHHHhCc-CHHHHHHHHHHHhhCCCEEEeCCCCeEEEE
Confidence 445553 367899999999999 999999999999999999986555 5554
No 137
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=59.31 E-value=20 Score=26.80 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=40.9
Q ss_pred HHHHHHHHHhh---CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 17 LTTKFVSLLQQ---APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 17 Lt~kFi~ll~~---~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
+...+...+.. .|+..+ +..++|+.|+| .+--+-...+.|+.-|+|+....
T Consensus 14 i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~v-Sr~tvr~al~~L~~~Gli~~~~~ 68 (113)
T 3tqn_A 14 LRDKIVEAIIDGSYVEGEMIPSIRKISTEYQI-NPLTVSKAYQSLLDDNVIEKRRG 68 (113)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEecC
Confidence 44445555543 466777 89999999999 99999999999999999998743
No 138
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=58.76 E-value=27 Score=29.96 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=35.9
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceec
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEK 65 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K 65 (243)
+.+.++.. +.+...++|+.+++ .+--++-.+++|+.-|||+.
T Consensus 16 ~IL~~L~~---g~~s~~ELa~~lgl-S~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 16 DLLSHLTC---MECYFSLLSSKVSV-SSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHTT---TTTCSSSSCTTCCC-CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHh---CCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEE
Confidence 35566653 56788899999999 99999999999999999997
No 139
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=58.71 E-value=10 Score=27.89 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=38.0
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhc----ccchhhhhhHHHhhhhccceeccc
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLE----VKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~----v~~KRRiYDItNVLEgiglI~K~s 67 (243)
...+..+.. .+.+...++|+.++ + .+-.+|-+++.|+.-|+|++..
T Consensus 13 ~~vL~~l~~--~~~~t~~ela~~l~~~~~~-s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 13 WEVMNIIWM--KKYASANNIIEEIQMQKDW-SPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHH--HSSEEHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHh--CCCcCHHHHHHHHhccCCC-cHhhHHHHHHHHHHCCCeEEEe
Confidence 345555554 45689999999999 5 6999999999999999999874
No 140
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=58.53 E-value=13 Score=27.34 Aligned_cols=43 Identities=23% Similarity=0.189 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhc
Q psy7686 17 LTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGI 60 (243)
Q Consensus 17 Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgi 60 (243)
...+++.++.+.....+++.++|+.+++ .+|.|.-+..-.-|+
T Consensus 8 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~-S~~~l~r~fk~~~G~ 50 (113)
T 3oio_A 8 KLTEAVSLMEANIEEPLSTDDIAYYVGV-SRRQLERLFKQYLGT 50 (113)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTS-CHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHCc-CHHHHHHHHHHHHCc
Confidence 4577889999888888999999999999 999888877654443
No 141
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=57.93 E-value=11 Score=29.07 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=32.6
Q ss_pred eeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 33 LHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 33 idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
++..++|+.+++ ..+-+..+++-|+.-|+|++...
T Consensus 52 ps~~~LA~~l~~-s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 52 PTPAELAERMTV-SAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp CCHHHHHHTSSS-CHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEeE
Confidence 799999999999 99999999999999999999743
No 142
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=57.89 E-value=9.9 Score=34.67 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=39.8
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
++..|.+.+++.+...++|+.+++ .+=.+==+++-||.-|||+|.
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~~~~-~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKCSEF-KPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCC-CHHHHHHHHHHHHTTTTSCCE
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEeec
Confidence 455556666688999999999999 999999999999999999997
No 143
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=57.78 E-value=54 Score=24.12 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=36.5
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+..+... +.+...++|+.|++ .+--++-+++-|+.-|+|++.
T Consensus 34 iL~~l~~~--~~~t~~~la~~l~~-s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 34 YLVRVCEN--PGIIQEKIAELIKV-DRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHC--cCcCHHHHHHHHCC-CHhHHHHHHHHHHHCCCEEee
Confidence 34444443 46899999999999 999999999999999999986
No 144
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=57.35 E-value=12 Score=29.34 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=35.1
Q ss_pred CCeeeHHHHHhhh-cccchhhhhhHHHhhhhccceeccc
Q psy7686 30 EGVLHLKYAAENL-EVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 30 ~g~idL~~aa~~L-~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.|....+++++.+ ++ .++-+......||.-|||+|..
T Consensus 37 ~g~~rf~eL~~~l~gI-s~~~Ls~~L~~Le~~GLV~R~~ 74 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSI-TQRMLTLQLRELEADGIVHREV 74 (131)
T ss_dssp TSCBCHHHHHHHCTTS-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHhccc-CHHHHHHHHHHHHHCCCEEEEe
Confidence 6789999999999 99 9999999999999999999974
No 145
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=57.02 E-value=6.9 Score=30.60 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=33.0
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+.+...++|+.+++ .+--++-+++-|+.-|+|+|.
T Consensus 58 ~~~t~~eLa~~l~i-s~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 58 GPINLATLATLLGV-QPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp CSEEHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCC-CHHHHHHHHHHHHHCCCEEec
Confidence 45899999999999 999999999999999999985
No 146
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=56.31 E-value=4.4 Score=30.12 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=32.8
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+.+...++|+.+++ .+-.++-+++-|+.-|+|++.
T Consensus 47 ~~~~~~~la~~l~~-~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 47 ACITPVELKKVLSV-DLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SSBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCC-ChHHHHHHHHHHHHCCCEEec
Confidence 45799999999999 999999999999999999986
No 147
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=56.13 E-value=10 Score=29.98 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=33.0
Q ss_pred eeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 32 VLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 32 ~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+...++|+.|++ .+--++-+++-||.-|+|++..
T Consensus 86 ~~t~~eLa~~l~i-s~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 86 GLRPTELSALAAI-SGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp CBCHHHHHHHCSC-CSGGGSSHHHHHHHHTSEECCC
T ss_pred CCCHHHHHHHHCC-CHHHHHHHHHHHHHCcCEEecC
Confidence 4899999999999 9999999999999999999973
No 148
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=55.74 E-value=8.5 Score=29.72 Aligned_cols=36 Identities=25% Similarity=0.134 Sum_probs=33.6
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+.+...++|+.+++ .+--+.-+++-||.-|+|+|.
T Consensus 58 ~~~~t~~eLa~~l~~-~~~tvs~~l~~Le~~Glv~r~ 93 (162)
T 3k0l_A 58 KPNLSNAKLAERSFI-KPQSANKILQDLLANGWIEKA 93 (162)
T ss_dssp CTTCCHHHHHHHHTS-CGGGHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCcCeEec
Confidence 346899999999999 999999999999999999987
No 149
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=55.39 E-value=12 Score=27.13 Aligned_cols=43 Identities=7% Similarity=0.064 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhc
Q psy7686 17 LTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGI 60 (243)
Q Consensus 17 Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgi 60 (243)
+..+.+.++.......+++.++|+.+|+ .+|.|.-+..-.-|+
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~-s~~~l~r~fk~~~G~ 45 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGI-SSRGIFKAFQRSRGY 45 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTC-CHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCC-CHHHHHHHHHHHhCc
Confidence 4567788888877788999999999999 999888877654443
No 150
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=55.29 E-value=12 Score=32.22 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=38.1
Q ss_pred HHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 22 VSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 22 i~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+..+...+++.+...++|+.+++ .+=.+--+++-||.-|+|+|.
T Consensus 164 L~~L~~~~~~~~t~~eLa~~l~i-~~~tvt~~v~rLe~~GlV~R~ 207 (250)
T 1p4x_A 164 LAIITSQNKNIVLLKDLIETIHH-KYPQTVRALNNLKKQGYLIKE 207 (250)
T ss_dssp HHHHHTTTTCCEEHHHHHHHSSS-CHHHHHHHHHHHHHHTSSEEE
T ss_pred HHHHHhCCCCCcCHHHHHHHHCC-ChhhHHHHHHHHHHCCCEEee
Confidence 44455555557999999999999 999999999999999999997
No 151
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=53.89 E-value=10 Score=33.21 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=38.0
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEe
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWK 74 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~ 74 (243)
++.++..++|+.+++ ..+.++-+..+|.+.|++++.....|.-.
T Consensus 50 ~~~~t~~ela~~~~~-~~~~l~r~L~~L~~~g~~~~~~~g~y~~t 93 (360)
T 1tw3_A 50 AGARTVKALAARTDT-RPEALLRLIRHLVAIGLLEEDAPGEFVPT 93 (360)
T ss_dssp TTCCBHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred CCCCCHHHHHHHhCc-CHHHHHHHHHHHHHCCCEEecCCCeEEeC
Confidence 466899999999999 99999999999999999998655555543
No 152
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=53.58 E-value=10 Score=28.36 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=41.2
Q ss_pred cCcHHHHHHH----HHHHHhhCCCCeee--HHHHHhhh-cccchhhhhhHHHhhhhccceecccc
Q psy7686 11 EKSLGLLTTK----FVSLLQQAPEGVLH--LKYAAENL-EVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 11 ~~SL~~Lt~k----Fi~ll~~~~~g~id--L~~aa~~L-~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
...|..+..+ .+..+. .|... ..++++.+ ++ .+..+.-....||.-|||+|...
T Consensus 18 ~~~l~~l~~~wrl~IL~~L~---~g~~~~~~~eL~~~l~gi-s~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 18 ESVLHLLGKKYTMLIISVLG---NGSTRQNFNDIRSSIPGI-SSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp SSTHHHHHSTTHHHHHHHHT---SSSSCBCHHHHHHTSTTC-CHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHcCccHHHHHHHHh---cCCCCCCHHHHHHHccCC-CHHHHHHHHHHHHHCCCEEEeec
Confidence 4456666543 223332 45555 99999999 99 99999999999999999999744
No 153
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=53.55 E-value=25 Score=27.51 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=37.8
Q ss_pred HHHHHHhhCC-CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 20 KFVSLLQQAP-EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 20 kFi~ll~~~~-~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+.+.+|-..+ ++.+...++|+.+++ .++-+.-|..-|..-|+|+-.
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i-~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNL-SDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCEEEec
Confidence 3444444444 457999999999999 999999999999999999854
No 154
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=53.14 E-value=11 Score=26.99 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=31.9
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHHhhhhcccee
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIE 64 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~ 64 (243)
+++.+...++|+.+++ .+-.++-+++.||.-|+|.
T Consensus 27 ~~~~~t~~eLa~~l~i-~~~tvs~~l~~Le~~Glv~ 61 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNS-PHSYVWLIIKKFEEAKMVE 61 (95)
T ss_dssp TTCCEEHHHHHHHSSS-CHHHHHHHHHHHHHTTSEE
T ss_pred CCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCcCcc
Confidence 3445899999999999 9999999999999999993
No 155
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=52.71 E-value=50 Score=25.92 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=26.7
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7686 89 SKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQE 124 (243)
Q Consensus 89 ~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~e 124 (243)
.++.+|+++++.++...++|-+.-....+..+....
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~ 39 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACY 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999988888877777777766666666554
No 156
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=52.39 E-value=12 Score=29.59 Aligned_cols=36 Identities=6% Similarity=-0.012 Sum_probs=33.2
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
..-.+..++|+++++ ..+-|+.+++-|+.=|+|++.
T Consensus 49 ~~~ps~~~LA~~~~~-s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 49 SYFPTPNQLQEGMSI-SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CCSCCHHHHHTTSSS-CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEE
Confidence 345799999999999 999999999999999999985
No 157
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=51.44 E-value=11 Score=30.86 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=33.3
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+....+.++|+.|++ .+.-++..++.||.-|+|.+..
T Consensus 21 ~g~~~s~~eia~~lgl-~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 21 NGYPPSVREIARRFRI-TPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HSSCCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEECC-
T ss_pred hCCCCCHHHHHHHcCC-CcHHHHHHHHHHHHCCCEEecC
Confidence 3557899999999999 7778999999999999999863
No 158
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=50.93 E-value=43 Score=27.42 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=42.3
Q ss_pred cCcHHHHH-HHHHHHHhh---CCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 11 EKSLGLLT-TKFVSLLQQ---APEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 11 ~~SL~~Lt-~kFi~ll~~---~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
..|+.... ....+.+.. .|+..+.-.++|+.||| .|--+=+.+..|+.-|||+...
T Consensus 14 ~~~~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgV-SRtpVREAl~~L~~eGlv~~~~ 73 (222)
T 3ihu_A 14 DGSASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGV-GRNSVREALQRLAAEGIVDLQR 73 (222)
T ss_dssp --CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEECS
T ss_pred cCcHHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEec
Confidence 34454433 334444432 57889999999999999 9999999999999999999763
No 159
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=50.35 E-value=13 Score=27.87 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=34.9
Q ss_pred CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 28 APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 28 ~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+++.+ ...++|+.|+| .+=-+-..++.|+.-|+|++..
T Consensus 38 ~~g~~lps~~eLa~~lgV-Sr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 38 DGNEGLLVASKIADRVGI-TRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp BTTEEEECHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEe
Confidence 356666 99999999999 9999999999999999999874
No 160
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=49.93 E-value=95 Score=26.08 Aligned_cols=100 Identities=16% Similarity=0.274 Sum_probs=56.5
Q ss_pred CcCcHHHHHHHHHHHHhh-CCCCe---------------eeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEE
Q psy7686 10 FEKSLGLLTTKFVSLLQQ-APEGV---------------LHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRW 73 (243)
Q Consensus 10 ~~~SL~~Lt~kFi~ll~~-~~~g~---------------idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W 73 (243)
.+.+...|-++|-.|... .||.. .-||+|=+.|.=..+|+.||. -|.|+.+-+..
T Consensus 55 ~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~--~l~G~~~~~e~------- 125 (207)
T 3bvo_A 55 FRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL--KLHGIEIPERT------- 125 (207)
T ss_dssp SCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH--HHTTCCCCSSC-------
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HhcCCCccccc-------
Confidence 346788888999888753 55432 346777777775478999998 35566553321
Q ss_pred eccCCCCchhhhHHHHHhHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7686 74 KALKNKNEEEYDLEQSKLIELRDEIS------DMRNHEAVIDEHIRKCQQSLRNIQE 124 (243)
Q Consensus 74 ~G~~~~~~~~~~~~~~~~~~Lk~El~------~L~~~E~~LD~~I~~~~~~l~~l~e 124 (243)
....+ . +...++-+++++++ +|.+.+.++++.++.+.++|.+..+
T Consensus 126 --~~~~d-~---~fLme~me~~E~le~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~ 176 (207)
T 3bvo_A 126 --DYEMD-R---QFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFE 176 (207)
T ss_dssp --SSSSC-H---HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCCC-H---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 1 33333334444443 3455555666666666666666554
No 161
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=49.84 E-value=15 Score=27.74 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhc
Q psy7686 16 LLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGI 60 (243)
Q Consensus 16 ~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgi 60 (243)
.+..+++.++.+.....+++.++|+.+|+ .+|.|.-+..-.-|+
T Consensus 11 ~~i~~~~~~i~~~~~~~~sl~~lA~~~~~-S~~~l~r~fk~~~G~ 54 (129)
T 1bl0_A 11 ITIHSILDWIEDNLESPLSLEKVSERSGY-SKWHLQRMFKKETGH 54 (129)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSS-CHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCc-CHHHHHHHHHHHHCc
Confidence 45677899999888888999999999999 999888776544333
No 162
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=49.70 E-value=26 Score=26.81 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=38.9
Q ss_pred HHHHHhhCCCCeeeHHHHHhhh-----cccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENL-----EVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L-----~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+++|.++ ++.++..++.+.| ++ .+=-+|-..+.|+..|+|.|..
T Consensus 16 Il~~l~~~-~~~~sa~ei~~~l~~~~~~i-s~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 16 ISTLLETL-DDFRSAQELHDELRRRGENI-GLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHC-CSCEEHHHHHHHHHHTTCCC-CHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCC-CHhhHHHHHHHHHHCCCEEEEE
Confidence 56777664 6679999999999 78 8899999999999999999974
No 163
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=49.24 E-value=18 Score=25.95 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhCCCC-eeeHHHHHhhhcccchhhhhhHHHhhhhc
Q psy7686 17 LTTKFVSLLQQAPEG-VLHLKYAAENLEVKQKRRIYDITNVLEGI 60 (243)
Q Consensus 17 Lt~kFi~ll~~~~~g-~idL~~aa~~L~v~~KRRiYDItNVLEgi 60 (243)
+..+++.++.+.... .+++.++|+.+++ .+|.|+-+..-.-|+
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~-S~~~l~r~fk~~~g~ 46 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDL-SSGYLSIMFKKNFGI 46 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTC-CHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCc-CHHHHHHHHHHHHCc
Confidence 456677777776554 8999999999999 999888777655443
No 164
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=49.10 E-value=11 Score=33.24 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=36.6
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEE
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRW 73 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W 73 (243)
++.+++.++|+++++ ..++++-+..+|.++|++++.. +.|.-
T Consensus 62 ~~~~t~~eLA~~~g~-~~~~l~rlLr~L~~~gll~~~~-~~y~~ 103 (359)
T 1x19_A 62 EGPKDLATLAADTGS-VPPRLEMLLETLRQMRVINLED-GKWSL 103 (359)
T ss_dssp TCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred CCCCCHHHHHHHhCc-ChHHHHHHHHHHHhCCCeEeeC-CeEec
Confidence 477999999999999 9999999999999999999874 34443
No 165
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=48.40 E-value=33 Score=24.90 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=30.0
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHH
Q psy7686 10 FEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITN 55 (243)
Q Consensus 10 ~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItN 55 (243)
...++..+-+.+|......-+| +...||+.||+ .|+.||--..
T Consensus 34 ~~~~l~~~Er~~I~~aL~~~~G--N~s~AA~~LGI-SR~TLyrKLk 76 (81)
T 1umq_A 34 NPMSADRVRWEHIQRIYEMCDR--NVSETARRLNM-HRRTLQRILA 76 (81)
T ss_dssp SSSCHHHHHHHHHHHHHHHTTS--CHHHHHHHHTS-CHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhCC--CHHHHHHHhCC-CHHHHHHHHH
Confidence 3456777777777544333343 46799999999 9999986543
No 166
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=48.34 E-value=13 Score=32.91 Aligned_cols=36 Identities=11% Similarity=-0.007 Sum_probs=33.8
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+|.+++.++|+++++ ..|.++-+..+|.++|++++.
T Consensus 48 ~~~~t~~eLA~~~g~-~~~~l~rlLr~l~~~g~l~~~ 83 (363)
T 3dp7_A 48 REGYTLQEISGRTGL-TRYAAQVLLEASLTIGTILLE 83 (363)
T ss_dssp TTCBCHHHHHHHHTC-CHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCHHHHHHHhCc-CHHHHHHHHHHHhhCCCeEec
Confidence 478999999999999 999999999999999999875
No 167
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=48.16 E-value=24 Score=25.50 Aligned_cols=42 Identities=7% Similarity=0.094 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCC-CeeeHHHHHhhhcccchhhhhhHHHhhhh
Q psy7686 17 LTTKFVSLLQQAPE-GVLHLKYAAENLEVKQKRRIYDITNVLEG 59 (243)
Q Consensus 17 Lt~kFi~ll~~~~~-g~idL~~aa~~L~v~~KRRiYDItNVLEg 59 (243)
...+.+.++.+... ..+++.++|+.+|+ .+|.+.-+..-.-|
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~-S~~~l~r~fk~~~G 46 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCL-SPSRLSHLFRQQLG 46 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTS-CHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCC-CHHHHHHHHHHHHC
Confidence 34667888888877 89999999999999 98888877654433
No 168
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=47.72 E-value=1e+02 Score=24.24 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=26.9
Q ss_pred eeeHHHHHhhhcccchh--hhhhHHHhhhhcccee--ccccCceEEec
Q psy7686 32 VLHLKYAAENLEVKQKR--RIYDITNVLEGIGLIE--KNNKNIIRWKA 75 (243)
Q Consensus 32 ~idL~~aa~~L~v~~KR--RiYDItNVLEgiglI~--K~sKn~i~W~G 75 (243)
.+.+.++|+.+|| ..+ |.| |..||+. +...|.++.-+
T Consensus 16 ~~~I~evA~~~gv-s~~tLR~Y------e~~Gll~p~~r~~~g~R~Y~ 56 (148)
T 3gpv_A 16 YYTIGQVAKMQHL-TISQIRYY------DKQGLFPFLQRNEKGDRIFN 56 (148)
T ss_dssp CBCHHHHHHHTTC-CHHHHHHH------HHTTCCTTCEECTTCCEEBC
T ss_pred ceeHHHHHHHHCc-CHHHHHHH------HHCCCCCCCcCCCCCCeecC
Confidence 5889999999999 776 445 6778885 34456666544
No 169
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=47.46 E-value=20 Score=26.80 Aligned_cols=45 Identities=4% Similarity=0.062 Sum_probs=36.2
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhccc---chhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVK---QKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~---~KRRiYDItNVLEgiglI~K~s 67 (243)
++..|.. .+.+...++++.|+.+ .+--+|-+++-||.-|+|+|..
T Consensus 40 VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 40 VMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 4555654 4568999999999862 3578999999999999999864
No 170
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=47.12 E-value=61 Score=26.38 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=36.6
Q ss_pred CCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 28 APEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 28 ~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
.|+..++-.++|+.||| .|--+=+.+..|+.-|||+....
T Consensus 31 ~pG~~L~e~~La~~lgV-SRtpVREAL~~L~~eGlv~~~~~ 70 (218)
T 3sxy_A 31 KLGEKLNVRELSEKLGI-SFTPVRDALLQLATEGLVKVVPR 70 (218)
T ss_dssp CTTCEECHHHHHHHHTC-CHHHHHHHHHHHHHHTSEEEETT
T ss_pred CCCCEeCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEeCC
Confidence 57888999999999999 99999999999999999997643
No 171
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=46.90 E-value=27 Score=26.64 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=38.3
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhc----ccchhhhhhHHHhhhhccceeccc
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLE----VKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~----v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.++..|... .+.+...++++.|+ + .+--+|-+++-|+.-|+|++..
T Consensus 13 ~vL~~L~~~-~~~~t~~el~~~l~~~~~~-~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 13 AVMDHLWSR-TEPQTVRQVHEALSARRDL-AYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHTC-SSCEEHHHHHHHHTTTCCC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhc-CCCCCHHHHHHHHhccCCC-CHHHHHHHHHHHHHCCCEEEEe
Confidence 455666553 35689999999998 7 7889999999999999999874
No 172
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=46.77 E-value=23 Score=27.33 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=38.3
Q ss_pred HHHHHhhCCCCeeeHHHHHhhh-----cccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENL-----EVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L-----~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+++|.+++++.++..++.+.| ++ .+=-+|-..+.|+..|+|.|..
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDV-GLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHCCcEEEEE
Confidence 5677776544789999999999 67 7888999999999999999974
No 173
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=46.02 E-value=80 Score=24.86 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=46.8
Q ss_pred hhhhhhHHHhhhhccceecc--------------------ccCceEEeccCCC---Cchhh-hHHHHHhHhHHHHHHHHH
Q psy7686 47 KRRIYDITNVLEGIGLIEKN--------------------NKNIIRWKALKNK---NEEEY-DLEQSKLIELRDEISDMR 102 (243)
Q Consensus 47 KRRiYDItNVLEgiglI~K~--------------------sKn~i~W~G~~~~---~~~~~-~~~~~~~~~Lk~El~~L~ 102 (243)
.-+|=|+..+++.|..+.+. ..+-+.|.|.+-. +..+- .-+..++..|+..+..|+
T Consensus 39 ~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~ 118 (151)
T 2zdi_C 39 KAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQ 118 (151)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665521 1345788886655 11100 124456667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy7686 103 NHEAVIDEHIRKCQQSLRNIQE 124 (243)
Q Consensus 103 ~~E~~LD~~I~~~~~~l~~l~e 124 (243)
.....+...|..+...|+.+..
T Consensus 119 ~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 119 GALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777666654
No 174
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=45.94 E-value=28 Score=31.31 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=41.0
Q ss_pred CCcCcHHHHH-H-----HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 9 RFEKSLGLLT-T-----KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 9 R~~~SL~~Lt-~-----kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
|-=+-||.++ + ..++.|.+. ++.++++++++..++ +.-||+..|+.+|++.....
T Consensus 180 kPLSdLG~~sY~~YW~~~i~~~L~~~-~~~isi~~is~~Tgi----~~~Dii~tL~~l~~l~~~kg 240 (276)
T 3to7_A 180 KPLSDLGLLSYRAYWSDTLITLLVEH-QKEITIDEISSMTSM----TTTDILHTAKTLNILRYYKG 240 (276)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHT-CSEEEHHHHHHHHCB----CHHHHHHHHHHTTCEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhc-CCceeHHHHHHHhCC----CHHHHHHHHHHCCCEEEeCC
Confidence 3344566655 2 255666654 578999999999999 67999999999999976533
No 175
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=45.60 E-value=16 Score=24.83 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.9
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHH
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITN 55 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItN 55 (243)
++..+.+.++|+.||| .|..||..++
T Consensus 7 ~~~~l~~~eva~~lgv-srstiy~~~~ 32 (66)
T 1z4h_A 7 PDSLVDLKFIMADTGF-GKTFIYDRIK 32 (66)
T ss_dssp SSSEECHHHHHHHHSS-CHHHHHHHHH
T ss_pred cccccCHHHHHHHHCc-CHHHHHHHHH
Confidence 4678999999999999 9999999987
No 176
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=45.41 E-value=1.2e+02 Score=24.61 Aligned_cols=98 Identities=18% Similarity=0.326 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHHHhh-CCCCe---------------eeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEecc
Q psy7686 13 SLGLLTTKFVSLLQQ-APEGV---------------LHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKAL 76 (243)
Q Consensus 13 SL~~Lt~kFi~ll~~-~~~g~---------------idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~G~ 76 (243)
....|-+.|..+... .||.. .-|++|=+.|.=..+|+.||.. |.|+.+-.-.
T Consensus 19 d~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~--l~g~~~~~e~---------- 86 (174)
T 3hho_A 19 DGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS--LQGIEMNAEQ---------- 86 (174)
T ss_dssp CHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH--HTTCCCC-------------
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH--ccCCCccccc----------
Confidence 377888888888764 55531 2356666666655789999975 4566553321
Q ss_pred CCCCchhhhHHHHHhHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7686 77 KNKNEEEYDLEQSKLIELRDEISD----------MRNHEAVIDEHIRKCQQSLRNIQEE 125 (243)
Q Consensus 77 ~~~~~~~~~~~~~~~~~Lk~El~~----------L~~~E~~LD~~I~~~~~~l~~l~ed 125 (243)
....+. +...++-++++++.+ |.....++++.++.+.++|...++.
T Consensus 87 ~~~~d~---~fLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 142 (174)
T 3hho_A 87 QTLQDP---MFLMEQMELREELESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLAQ 142 (174)
T ss_dssp -CCCCH---HHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCH---HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 011111 344444445555543 5556667778888888888887765
No 177
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=44.88 E-value=21 Score=30.12 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=41.1
Q ss_pred HHHHHHHHHhh---CCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 17 LTTKFVSLLQQ---APEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 17 Lt~kFi~ll~~---~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+...+...+.. .|+..+...++|+.||| .+=-|-.-++.|+.-|||+...
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgV-Sr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGV-SRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEeC
Confidence 34444444433 57888999999999999 9999999999999999999874
No 178
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=44.88 E-value=20 Score=32.41 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=35.8
Q ss_pred CCcCcHHHHH------HHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceec
Q psy7686 9 RFEKSLGLLT------TKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEK 65 (243)
Q Consensus 9 R~~~SL~~Lt------~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K 65 (243)
|-=+-||.++ ...++.|....++.++++++++..++ +.-||+..|+.+|++.-
T Consensus 185 kPLSDLG~~sYrsYW~~~il~~L~~~~~~~isi~~is~~T~i----~~~DIi~tL~~l~~l~~ 243 (284)
T 2ozu_A 185 KPLSDLGRLSYMAYWKSVILECLYHQNDKQISIKKLSKLTGI----CPQDITSTLHHLRMLDF 243 (284)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHCB----CHHHHHHHHHHTTCC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHhCC----CHHHHHHHHHHCCCEEe
Confidence 3334466665 22566666666788999999999999 77899999999999963
No 179
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=44.60 E-value=1.3e+02 Score=24.61 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=38.4
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+.+.++. ++.+...++|+.+|+ .+--++-.++.|+.-|+|++.
T Consensus 23 ~~IL~~L~---~~~~s~~eLA~~lgl-S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLR---NKEMTISQLSEILGK-TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHT---TCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH---cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEE
Confidence 34666665 357999999999999 999999999999999999986
No 180
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=44.47 E-value=67 Score=21.30 Aligned_cols=39 Identities=13% Similarity=0.315 Sum_probs=31.4
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7686 87 EQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEE 125 (243)
Q Consensus 87 ~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ed 125 (243)
+..++..|+..--.|+.-|+.|+..|..+...+..|-..
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 345677788887889999999999999999888777553
No 181
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=44.42 E-value=20 Score=27.67 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=29.2
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
++.+...++|+.+++ .+=-+--+++-||.-|||.+.
T Consensus 50 ~~~~t~~eLa~~l~~-~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 50 GIDLTMSELAARIGV-ERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ----CHHHHHHHHTC-CHHHHHHHHHHHHHTTSBC--
T ss_pred CCCcCHHHHHHHHCC-ChhhHHHHHHHHHHCCCEEee
Confidence 467999999999999 999999999999999999554
No 182
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=43.11 E-value=20 Score=31.39 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=39.0
Q ss_pred HHHHhhCCCCeeeHHHHHhhhccc--chhhhhhHHHhhhhccceecc--ccCceEE
Q psy7686 22 VSLLQQAPEGVLHLKYAAENLEVK--QKRRIYDITNVLEGIGLIEKN--NKNIIRW 73 (243)
Q Consensus 22 i~ll~~~~~g~idL~~aa~~L~v~--~KRRiYDItNVLEgiglI~K~--sKn~i~W 73 (243)
...+... ++.+++.++|+++++. ..++++-+.++|.++|++++. ..+.|.-
T Consensus 42 f~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~ 96 (352)
T 1fp2_A 42 PNIIQNH-GKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYAL 96 (352)
T ss_dssp HHHHHHH-TSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEE
T ss_pred hhhhhhc-CCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeC
Confidence 4444432 3579999999999993 378999999999999999987 3455554
No 183
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=42.82 E-value=74 Score=21.41 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=32.4
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7686 88 QSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEE 125 (243)
Q Consensus 88 ~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ed 125 (243)
..+...|+.++..|.+.-.+|-...+.+.++|..|.+.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566889999999999999999999999999888774
No 184
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=42.52 E-value=20 Score=25.30 Aligned_cols=26 Identities=8% Similarity=0.231 Sum_probs=23.2
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHH
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITN 55 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItN 55 (243)
....+.+.+||+-||+ -+..+|..++
T Consensus 13 ~K~~LTi~EaAeylgI-g~~~l~~L~~ 38 (70)
T 1y6u_A 13 ERYTLTIEEASKYFRI-GENKLRRLAE 38 (70)
T ss_dssp TSSEEEHHHHHHHTCS-CHHHHHHHHH
T ss_pred ccceeCHHHHHHHHCc-CHHHHHHHHH
Confidence 3567999999999999 9999999874
No 185
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=41.82 E-value=27 Score=28.98 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=36.2
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
.++.+...++|+.|+| .+-.+--+++-|+.-|||++...
T Consensus 17 ~~~~~~~~~lA~~l~v-s~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQV-SPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp SCSCCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCCCcCHHHHHHHHCC-ChhHHHHHHHHHHHCCCEEEecC
Confidence 5778999999999999 99999999999999999999854
No 186
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=41.72 E-value=29 Score=27.99 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=37.6
Q ss_pred HHHHHHhh-CCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 20 KFVSLLQQ-APEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 20 kFi~ll~~-~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+.+-++-. .+++.+...++|+.+++ .++-+.-|...|..-|||+-.
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i-~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNL-SEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCeEEEe
Confidence 33444433 34567999999999999 999999999999999999865
No 187
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=41.65 E-value=18 Score=29.59 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.3
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHH
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITN 55 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItN 55 (243)
.+..+.+.++|+.|+| .+.|+|+.++
T Consensus 28 ~~~~LTv~EVAe~LgV-s~srV~~LIr 53 (148)
T 2kfs_A 28 DEPTYDLPRVAELLGV-PVSKVAQQLR 53 (148)
T ss_dssp TSCEEEHHHHHHHHTC-CHHHHHHHHH
T ss_pred cCceEcHHHHHHHhCC-CHHHHHHHHH
Confidence 4578999999999999 9999999765
No 188
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.47 E-value=49 Score=22.29 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=21.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7686 91 LIELRDEISDMRNHEAVIDEHIRKCQQSLR 120 (243)
Q Consensus 91 ~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~ 120 (243)
...|+.|+++|+++-..|-+.+..+...|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 557888888888777777777776666554
No 189
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=41.16 E-value=4.9 Score=31.00 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=39.6
Q ss_pred HHHHHHHHHhh---CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 17 LTTKFVSLLQQ---APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 17 Lt~kFi~ll~~---~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
+...+...+.. .|+..+ +..++|+.||| .+--+-...+.|+.-|+|++...
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~v-Sr~tvr~Al~~L~~~G~i~~~~~ 70 (126)
T 3ic7_A 16 IADRICDDILLGQYEEEGRIPSVREYASIVEV-NANTVMRSYEYLQSQEVIYNKRG 70 (126)
T ss_dssp HHHHHHHHHHTTSSCBTSEECCTTTTTTCC-C-CSGGGHHHHHHHHTTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCcEEEEcC
Confidence 33444455533 467777 89999999999 99999999999999999998743
No 190
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=40.95 E-value=20 Score=27.13 Aligned_cols=50 Identities=16% Similarity=0.032 Sum_probs=31.7
Q ss_pred CCCCCCCCCCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 1 MCTDPANSRFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 1 ~~~~~~~~R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
|.......+.+..=..+....++++.+..-.-+++.++|++.|| .|.-||
T Consensus 1 M~~~~~~~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agv-s~~t~Y 50 (199)
T 3on2_A 1 MPVAEQPYHHGSLRRVLLARAESTLEKDGVDGLSLRQLAREAGV-SHAAPS 50 (199)
T ss_dssp ---CCCTTCCCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC------CC
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCC-ChHHHH
Confidence 44444444555566677788889998866667999999999999 555444
No 191
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=40.44 E-value=34 Score=26.44 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=33.9
Q ss_pred HHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 24 LLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 24 ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+...++ .+...++|+.+++ .+=.+--+++-||.-|+|+|.
T Consensus 39 ~L~~~~~-~~~~~eLa~~l~~-~~~tvs~~v~~Le~~GlV~R~ 79 (151)
T 4aik_A 39 NINRLPP-EQSQIQLAKAIGI-EQPSLVRTLDQLEEKGLITRH 79 (151)
T ss_dssp HHHHSCT-TSCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHcCC-CCcHHHHHHHHCc-CHHHHHHHHHHHHhCCCeEee
Confidence 3334333 3567899999999 999999999999999999986
No 192
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=40.16 E-value=53 Score=25.43 Aligned_cols=47 Identities=9% Similarity=0.198 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 18 TTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 18 t~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+-+.+-+|-..+++ ...++|+.+++ ..+-+..|+.-|..-|||+-..
T Consensus 11 Al~~L~~La~~~~~--s~~~IA~~~~i-~~~~l~kIl~~L~~aGlv~s~r 57 (145)
T 1xd7_A 11 AIHILSLISMDEKT--SSEIIADSVNT-NPVVVRRMISLLKKADILTSRA 57 (145)
T ss_dssp HHHHHHHHHTCSCC--CHHHHHHHHTS-CHHHHHHHHHHHHHTTSEECCS
T ss_pred HHHHHHHHHhCCCC--CHHHHHHHHCc-CHHHHHHHHHHHHHCCceEeec
Confidence 33444444444553 99999999999 9999999999999999998653
No 193
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=39.88 E-value=37 Score=27.63 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=40.2
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhc-ccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLE-VKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~-v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+.++...|.+..++.++++.++ + .+=-||--.+.|+..|||++..
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~l~~l-S~aTVyrhL~~L~eaGLV~~~~ 80 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYRNPDE-TEANLRYHVDELVDRGIVEKIP 80 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHHCTTS-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHcCCCCCCCHHHHHHhcCCC-CHHHHHHHHHHHHHCCCeEEee
Confidence 34556667888899999999999 9 9999999999999999999874
No 194
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=39.52 E-value=35 Score=29.32 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=38.1
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
++..+.....+.+...++|+.|++ .+--+-=+++=||.-|+|+|.
T Consensus 39 vL~~L~~~~~~~~~~~el~~~l~~-~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 39 LLTYLFHQQENTLPFKKIVSDLCY-KQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp HHHHHHSCSCSEEEHHHHHHHSSS-CGGGTHHHHHHHHHTTSCEEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCC-CHhhHHHHHHHHHHCCCEEec
Confidence 344445444567899999999999 999999999999999999997
No 195
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=39.32 E-value=29 Score=30.71 Aligned_cols=54 Identities=15% Similarity=0.077 Sum_probs=41.8
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc-ccCceEEec
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN-NKNIIRWKA 75 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~-sKn~i~W~G 75 (243)
.+.+.+|+ .++.++..++|+.|+| .++-|+--++.|+..|++... ...-|+..+
T Consensus 8 ~~Il~~L~--~~~~~s~~eLa~~l~v-S~~ti~r~l~~L~~~G~~i~~~~g~GY~l~~ 62 (321)
T 1bia_A 8 LKLIALLA--NGEFHSGEQLGETLGM-SRAAINKHIQTLRDWGVDVFTVPGKGYSLPE 62 (321)
T ss_dssp HHHHHHHT--TSSCBCHHHHHHHHTS-CHHHHHHHHHHHHHTTCCCEEETTTEEECSS
T ss_pred HHHHHHHH--cCCCcCHHHHHHHHCC-CHHHHHHHHHHHHhCCCcEEEecCCCcEEee
Confidence 34667774 4678999999999999 999999999999999998532 223455544
No 196
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=38.97 E-value=34 Score=25.19 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=14.8
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7686 86 LEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLR 120 (243)
Q Consensus 86 ~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~ 120 (243)
++..+...|+.|+..+.+.-.++.+.|+.+.++++
T Consensus 41 ELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 41 ELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555666665555555555555555544
No 197
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=38.64 E-value=54 Score=25.74 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=22.0
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7686 88 QSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRN 121 (243)
Q Consensus 88 ~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~ 121 (243)
..+...|.++++.|++..+.|+..|..+++.+..
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 120 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIP 120 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777776665543
No 198
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=38.59 E-value=27 Score=26.27 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=35.7
Q ss_pred hCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 27 QAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 27 ~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.+|++.+.+.++|+.+++ .+=++-=.+..||.-|||++.
T Consensus 31 ~~~g~~~s~~eLa~~l~l-~~stLsR~l~rLe~~GLV~r~ 69 (96)
T 2obp_A 31 ENGATPWSLPKIAKRAQL-PMSVLRRVLTQLQAAGLADVS 69 (96)
T ss_dssp STTCCCCBHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCCCCcCHHHHHHHhCC-chhhHHHHHHHHHHCCCEEee
Confidence 348888999999999999 999999999999999999985
No 199
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=38.45 E-value=25 Score=28.92 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=39.6
Q ss_pred HHHHHHHhh---CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 19 TKFVSLLQQ---APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 19 ~kFi~ll~~---~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
....+.+.. .|+..+ +-.++|+.||| .|=-+-..+..|+.-|||++..
T Consensus 14 ~~l~~~I~~g~l~pG~~LPsE~eLa~~~gV-SR~tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 14 EYIIESIWNNRFPPGTILPAERELSELIGV-TRTTLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp HHHHHHHHTTSSCTTSBCCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCcEEEec
Confidence 344444443 478888 79999999999 9999999999999999999763
No 200
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=38.33 E-value=27 Score=29.29 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=36.7
Q ss_pred CCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 28 APEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 28 ~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
.|+..+.-.++|+.||| .|=-|=+.+..|+.-|||+....
T Consensus 47 ~pG~~L~e~~La~~lgV-SRtpVREAL~~L~~eGlv~~~~~ 86 (239)
T 2hs5_A 47 RPGARLSEPDICAALDV-SRNTVREAFQILIEDRLVAHELN 86 (239)
T ss_dssp CTTCEECHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCcCEeCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEeCC
Confidence 47888999999999999 99999999999999999997643
No 201
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=38.20 E-value=21 Score=26.73 Aligned_cols=30 Identities=10% Similarity=0.318 Sum_probs=21.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7686 92 IELRDEISDMRNHEAVIDEHIRKCQQSLRN 121 (243)
Q Consensus 92 ~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~ 121 (243)
..|+++++.|+++...|+..|..+..+|++
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457777778877777777777776665543
No 202
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=37.98 E-value=19 Score=27.42 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=31.6
Q ss_pred cCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhh
Q psy7686 11 EKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYD 52 (243)
Q Consensus 11 ~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYD 52 (243)
+..=..+...+++++.+..-.-+.+.++|+..|| .|.-||-
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~ 53 (203)
T 3f1b_A 13 AVREQQMLDAAVDVFSDRGFHETSMDAIAAKAEI-SKPMLYL 53 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTS-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHHHHHHHhCC-chHHHHH
Confidence 3334456677889998866667999999999999 7777773
No 203
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=37.51 E-value=20 Score=25.61 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=29.1
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccc
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGL 62 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgigl 62 (243)
+.+.++.. +.-..+.++|..+|| .+.-||-+..-...-|.
T Consensus 13 ~~v~~~~~--~~g~s~~~ia~~~gI-s~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 13 DAVALYEN--SDGASLQQIANDLGI-NRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp HHHHHHTT--GGGSCHHHHHHHHTS-CHHHHHHHHHHHCCCST
T ss_pred HHHHHHHH--cCCChHHHHHHHHCc-CHHHHHHHHHHHhhcCc
Confidence 35555532 113689999999999 99999999887766544
No 204
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=37.00 E-value=86 Score=21.42 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=21.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7686 91 LIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQ 123 (243)
Q Consensus 91 ~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ 123 (243)
...|+.++..|+..-..|...|..++.++..|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776777777766666655554
No 205
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=36.70 E-value=28 Score=30.84 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=37.8
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
..+.|.++ .+.++..++|+++++ ..+.++-+..+|.++|++++...
T Consensus 33 lfd~L~~~-~~p~t~~eLA~~~g~-~~~~l~rlLr~L~~~gll~~~~~ 78 (353)
T 4a6d_A 33 VFDLLAEA-PGPLDVAAVAAGVRA-SAHGTELLLDICVSLKLLKVETR 78 (353)
T ss_dssp HHHHHHHS-SSCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHhcC-CCCCCHHHHHHhhCc-CHHHHHHHHHHHHHCCCEEEecc
Confidence 34445443 467999999999999 99999999999999999986543
No 206
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=36.23 E-value=13 Score=29.06 Aligned_cols=49 Identities=10% Similarity=-0.043 Sum_probs=34.4
Q ss_pred CCCCCCCCCCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 1 MCTDPANSRFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 1 ~~~~~~~~R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
|...+...|.+..=..+....++++.+..-. +.+.++|++.|| .|.-||
T Consensus 1 M~~~~~~~~~~~~r~~Il~aA~~lf~~~G~~-~s~~~IA~~agv-s~~tiY 49 (224)
T 1t33_A 1 MNIPTTTTKGEQAKSQLIAAALAQFGEYGLH-ATTRDIAALAGQ-NIAAIT 49 (224)
T ss_dssp CCSCCCSHHHHHHHHHHHHHHHHHHHHHGGG-SCHHHHHHHHTS-CHHHHH
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHhCcc-ccHHHHHHHhCC-CHHHHH
Confidence 4343333334444455667788888876667 999999999999 777776
No 207
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=35.82 E-value=14 Score=30.40 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=33.5
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+.+...++|+.+++ .+--+.-+++-||.-|+|+|..
T Consensus 61 ~~~t~~eLa~~l~i-~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 61 NGASISEIAKFGVM-HVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp TSEEHHHHHHHTTC-CHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEec
Confidence 45899999999999 9999999999999999999973
No 208
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=35.52 E-value=23 Score=27.31 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=32.1
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 9 RFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 9 R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
|....=..+.....+++.+..-.-++++++|++.|| .|.-||
T Consensus 9 r~~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agv-sk~tlY 50 (192)
T 2fq4_A 9 RNIETQKAILSASYELLLESGFKAVTVDKIAERAKV-SKATIY 50 (192)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTC-CHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCC-CHHHHH
Confidence 333333456667888888766678999999999999 888887
No 209
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.30 E-value=2.2e+02 Score=26.23 Aligned_cols=35 Identities=20% Similarity=0.530 Sum_probs=24.5
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7686 90 KLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQE 124 (243)
Q Consensus 90 ~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~e 124 (243)
++..|+.|+..|+++-.+|++.|+.++..++.+.+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777777776655
No 210
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=35.03 E-value=49 Score=24.16 Aligned_cols=47 Identities=6% Similarity=0.087 Sum_probs=37.8
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhccc---chhhhhhHHHhhhhccceeccc
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLEVK---QKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~v~---~KRRiYDItNVLEgiglI~K~s 67 (243)
-.++..+... +.+...++|+.|++. .+--++-+++-||.-|+|++..
T Consensus 13 ~~vL~~L~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 13 WDVMNIIWDK--KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHS--SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 3456666653 468999999999841 6788999999999999999874
No 211
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=34.75 E-value=34 Score=30.77 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=36.1
Q ss_pred CCcCcHHHHH-H-----HHHHHHhhCCCC-----eeeHHHHHhhhcccchhhhhhHHHhhhhccceec
Q psy7686 9 RFEKSLGLLT-T-----KFVSLLQQAPEG-----VLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEK 65 (243)
Q Consensus 9 R~~~SL~~Lt-~-----kFi~ll~~~~~g-----~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K 65 (243)
|-=+-||.++ + ..+++|.+..+. .++++++++..++ +.-||+..|+.+|++..
T Consensus 178 kPLSdLG~~sYr~YW~~~i~~~L~~~~~~~~~~~~isi~~is~~T~i----~~~Dii~tL~~l~~l~~ 241 (280)
T 2ou2_A 178 KPLSDLGLLSYRSYWSQTILEILMGLKSESGERPQITINEISEITSI----KKEDVISTLQYLNLINY 241 (280)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHC-----------CCBHHHHHHHHCB----CHHHHHHHHHHTTCCCB
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcccccCCCCceeHHHHHHHhCC----CHHHHHHHHHHCCcEEE
Confidence 3334466655 2 245555543332 7999999999999 78899999999999964
No 212
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=34.39 E-value=31 Score=29.86 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=35.0
Q ss_pred eeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceE
Q psy7686 32 VLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIR 72 (243)
Q Consensus 32 ~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~ 72 (243)
.+++.++|+++++ ..|.++-+..+|.++|++++.. +.|.
T Consensus 56 ~~t~~elA~~~~~-~~~~l~rlLr~L~~~gll~~~~-~~y~ 94 (352)
T 3mcz_A 56 GRTPAEVAASFGM-VEGKAAILLHALAALGLLTKEG-DAFR 94 (352)
T ss_dssp CBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred CCCHHHHHHHhCc-ChHHHHHHHHHHHHCCCeEecC-Ceee
Confidence 7999999999999 9999999999999999999875 4444
No 213
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.29 E-value=1e+02 Score=21.17 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=14.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7686 92 IELRDEISDMRNHEAVIDEHIRKCQQSLR 120 (243)
Q Consensus 92 ~~Lk~El~~L~~~E~~LD~~I~~~~~~l~ 120 (243)
..|..++..|+..-..|...|..++..+.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544433
No 214
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=33.87 E-value=2e+02 Score=23.84 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccce--ecc-ccCceEEeccCCCCchhhhHHHHHhHhHH------HHHHH
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLI--EKN-NKNIIRWKALKNKNEEEYDLEQSKLIELR------DEISD 100 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI--~K~-sKn~i~W~G~~~~~~~~~~~~~~~~~~Lk------~El~~ 100 (243)
...+.+.++|+.+|| ..|-|- -.|.+||+ .+. +.|.++.-....+ .....+..|+ +|+..
T Consensus 3 ~~~~~i~e~a~~~gv-s~~tlr----~y~~~gll~p~~~d~~~g~R~y~~~~~------~~l~~i~~l~~~g~~l~~i~~ 71 (278)
T 1r8e_A 3 ESYYSIGEVSKLANV-SIKALR----YYDKIDLFKPAYVDPDTSYRYYTDSQL------IHLDLIKSLKYIGTPLEEMKK 71 (278)
T ss_dssp CCEEEHHHHHHHHTC-CHHHHH----HHHHTTSSCCSEECTTTCCEEEETGGG------GHHHHHHHHHHTTCCHHHHHH
T ss_pred CCcEeHHHHHHHHCc-CHHHHH----HHHHCCCCCCCccCCCCCccccCHHHH------HHHHHHHHHHHCCCCHHHHHH
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHhhhh
Q psy7686 101 ------------MRNHEAVIDEHIRKCQQSLRNIQE 124 (243)
Q Consensus 101 ------------L~~~E~~LD~~I~~~~~~l~~l~e 124 (243)
|.++.+.|++.|+.+++.+..|..
T Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (278)
T 1r8e_A 72 AQDLEMEELFAFYTEQERQIREKLDFLSALEQTISL 107 (278)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 215
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.85 E-value=53 Score=25.52 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=38.0
Q ss_pred HHHHHhhCCCCeeeHHHHHhhh-----cccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENL-----EVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L-----~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+++|.++ ++.++..++.+.| ++ .+=-+|-..+.|+..|+|.|..
T Consensus 27 Il~~L~~~-~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv~~~~ 76 (145)
T 2fe3_A 27 ILEYLVNS-MAHPTADDIYKALEGKFPNM-SVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp HHHHHHHC-SSCCCHHHHHHHHGGGCTTC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCC-ChhhHHHHHHHHHHCCCEEEEe
Confidence 56677664 5678999999999 67 7889999999999999999974
No 216
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=33.76 E-value=32 Score=28.50 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=34.2
Q ss_pred CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceec
Q psy7686 28 APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEK 65 (243)
Q Consensus 28 ~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K 65 (243)
.|+..+ .-.++|+.||| .|--+=+.+..|++-|||+.
T Consensus 23 ~pG~~LpsE~~La~~lgV-SRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 23 KIGDHLPSERALSETLGV-SRSSLREALRVLEALGTIST 60 (239)
T ss_dssp CTTCBCCCHHHHHHHHTC-CHHHHHHHHHHHHHHTSEEC
T ss_pred CCCCcCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCeEe
Confidence 477788 58899999999 99999999999999999998
No 217
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=33.60 E-value=36 Score=23.01 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=28.4
Q ss_pred eeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc--CceEEec
Q psy7686 32 VLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK--NIIRWKA 75 (243)
Q Consensus 32 ~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK--n~i~W~G 75 (243)
.++..++|+.||| .++-||....- |+ -..+... ..+.|.-
T Consensus 2 ~lt~~e~a~~Lgv-S~~Tl~rw~~~--G~-P~~~~~g~~~~~~y~~ 43 (68)
T 1j9i_A 2 EVNKKQLADIFGA-SIRTIQNWQEQ--GM-PVLRGGGKGNEVLYDS 43 (68)
T ss_dssp EEEHHHHHHHTTC-CHHHHHHHTTT--TC-CCSSCCCSSSCCEEEH
T ss_pred ccCHHHHHHHHCc-CHHHHHHHHHC--CC-CeEeeCCCcceEEECH
Confidence 4788999999999 99999998864 55 2223333 3666654
No 218
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=33.51 E-value=25 Score=32.06 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7686 96 DEISDMRNHEAVIDEHIRKCQQSLRNIQE 124 (243)
Q Consensus 96 ~El~~L~~~E~~LD~~I~~~~~~l~~l~e 124 (243)
+++..|+.+-+.++..|..++++|..+..
T Consensus 26 ~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555544
No 219
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=33.12 E-value=1.3e+02 Score=21.94 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=44.7
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc-ccCceEEecc
Q psy7686 10 FEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN-NKNIIRWKAL 76 (243)
Q Consensus 10 ~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~-sKn~i~W~G~ 76 (243)
.+.....+-.+|+.+++..|.|+.|=.-.+..=++ ..--.-.++|.|-.-|-|+=. ..+.+.|+-.
T Consensus 8 ~~~~~~~ie~~IL~l~~~~P~GItd~~L~~~~p~~-~~~~r~~aIN~LL~~gkiel~K~~~~liYr~k 74 (81)
T 2dk8_A 8 PDADPVEIENRIIELCHQFPHGITDQVIQNEMPHI-EAQQRAVAINRLLSMGQLDLLRSNTGLLYRIK 74 (81)
T ss_dssp SSSCHHHHHHHHHHHHHHCSSCEEHHHHHHHCTTS-CHHHHHHHHHHHHHHTSEEEEECSSSEEEEEC
T ss_pred ccccHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCC-CHHHHHHHHHHHHHcCCeEEEecCCeEEEEec
Confidence 34446677888999999999998775544444445 555556889999888877632 1255555443
No 220
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=32.92 E-value=34 Score=30.00 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=36.3
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhccc--chhhhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVK--QKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~--~KRRiYDItNVLEgiglI~K~ 66 (243)
..+.+... ++.+++.++|+++++. ..++++-+..+|.++|++++.
T Consensus 35 if~~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 35 IADAIHNH-GKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HHHHHHHH-TSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred hHhHHhhc-CCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 34445442 3579999999999993 378999999999999999987
No 221
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=32.89 E-value=25 Score=27.39 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=32.2
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhh
Q psy7686 5 PANSRFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYD 52 (243)
Q Consensus 5 ~~~~R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYD 52 (243)
+...|.+..=..+....++++.+..-.-+++.++|+..|| .|.-||=
T Consensus 8 ~~~~~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agv-s~~t~Y~ 54 (221)
T 3c2b_A 8 ITTQEFSPRQNAVLDQALRLLVEGGEKALTTSGLARAANC-SKESLYK 54 (221)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCC-CHHHHHH
Confidence 3334444445567777888988765567999999999999 8877773
No 222
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.72 E-value=41 Score=26.43 Aligned_cols=46 Identities=17% Similarity=0.360 Sum_probs=37.8
Q ss_pred HHHHHhhCCCCeeeHHHHHhhh-----cccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENL-----EVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L-----~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+++|.+++++.++..++.+.| ++ .+=-+|-..+.|+..|+|.|..
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEI-GLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHCCcEEEEE
Confidence 5566665443679999999998 56 7888999999999999999973
No 223
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=32.16 E-value=25 Score=29.19 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=34.4
Q ss_pred CCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 29 PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 29 ~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
..+.+.+.+||+.|++ .+=-+--.++-||..||++|..
T Consensus 24 ~~~~~s~s~aA~~L~i-sq~avSr~I~~LE~~~L~~R~~ 61 (230)
T 3cta_A 24 NRAYLTSSKLADMLGI-SQQSASRIIIDLEKNGYITRTV 61 (230)
T ss_dssp SEEECCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEEE
Confidence 3556889999999999 9999999999999999999973
No 224
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=31.89 E-value=49 Score=29.96 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=37.3
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+.++++... ..+....+++.++| .++-+.-.++-|+..|+|++.+
T Consensus 301 ~ll~~l~~~--p~~t~~~~~~~~gv-S~~Ta~r~L~~L~e~GiL~~~~ 345 (373)
T 2qc0_A 301 ELVQVIFEQ--PYCRIQNLVESGLA-KRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp HHHHHHHHC--SEEEHHHHHHTSSS-CHHHHHHHHHHHHHTTSCEEC-
T ss_pred HHHHHHHhC--CcccHHHHHHHhCC-CHHHHHHHHHHHHHCCcEEEec
Confidence 345555543 46899999999999 9999999999999999999874
No 225
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.85 E-value=1.2e+02 Score=20.84 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=20.3
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7686 86 LEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSL 119 (243)
Q Consensus 86 ~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l 119 (243)
++..+.+.|+.+...|..+-..|...+.++.+-|
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666554433
No 226
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=31.65 E-value=1.3e+02 Score=21.57 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=22.8
Q ss_pred hhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7686 84 YDLEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLR 120 (243)
Q Consensus 84 ~~~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~ 120 (243)
.+++..++...++|+..+...|.....++..+..+|.
T Consensus 13 ~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~ 49 (71)
T 1uix_A 13 KEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLL 49 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777777777777555554455555555544
No 227
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=31.44 E-value=72 Score=23.95 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 15 GLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 15 ~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
..+...+.+++.. +|.+++.++-+.||+ .|+..-=|..-|..+|+..|++-
T Consensus 65 ~~~~~~l~~~~~~--~~~it~ae~Rd~lg~-sRK~ai~lLE~~Dr~g~TrR~gd 115 (121)
T 2pjp_A 65 VEFANMIRDLDQE--CGSTCAADFRDRLGV-GRKLAIQILEYFDRIGFTRRRGN 115 (121)
T ss_dssp HHHHHHHHHHHHH--HSSEEHHHHHHHHTS-CHHHHHHHHHHHHHHTSEEEETT
T ss_pred HHHHHHHHHHHHH--CCCccHHHHHHHHCC-cHHHHHHHHHHHhhcCCeEeeCC
Confidence 3344555566655 578999999999999 99988899999999999988753
No 228
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=31.39 E-value=48 Score=28.42 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=38.7
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEE
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRW 73 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W 73 (243)
+|..+..++|+.+++ ..+-+-...+-|...|+|++...+.|.-
T Consensus 176 ~~~~t~~~la~~~~l-~~~~V~~~l~~L~~~~~v~~~~~~~~~~ 218 (232)
T 2qlz_A 176 NGRATVEELSDRLNL-KEREVREKISEMARFVPVKIINDNTVVL 218 (232)
T ss_dssp SSEEEHHHHHHHHTC-CHHHHHHHHHHHTTTSCEEEETTTEEEE
T ss_pred cCCCCHHHHHHHhCc-CHHHHHHHHHHHHhcCCeEEecCCeEEe
Confidence 588999999999999 9999999999999999999886666653
No 229
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=31.30 E-value=1.4e+02 Score=21.77 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=19.1
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7686 86 LEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQ 123 (243)
Q Consensus 86 ~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ 123 (243)
++..+++.|+.|+..|.=.-..+.-.|..+.+.-+++.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666665444444444444444444443
No 230
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=31.22 E-value=17 Score=27.66 Aligned_cols=47 Identities=9% Similarity=-0.009 Sum_probs=31.8
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhh
Q psy7686 5 PANSRFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYD 52 (243)
Q Consensus 5 ~~~~R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYD 52 (243)
....|.+..=..+....++++.+..-.-+.+.++|++.|| .|.-||-
T Consensus 7 ~~~~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agv-s~~t~Y~ 53 (191)
T 4aci_A 7 AAGDKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGK-SRGAIFH 53 (191)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTC-CHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCC-CchHHHH
Confidence 3344556666677788888988754456999999999999 7777773
No 231
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=30.68 E-value=57 Score=26.26 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=33.3
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhc--------------ccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLE--------------VKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~--------------v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+.+.+...+.|. .++|+.+| | .+--|-.+...||..|||++..
T Consensus 59 lr~~i~~g~~G~---~~La~~~gg~k~~g~~p~~~~~v-Sr~tVR~AL~~Le~~GlV~~~~ 115 (150)
T 2v7f_A 59 LRRVYLDGPVGI---ERLRTYYGGRKNRGHAPERFYKA-GGSIIRKALQQLEAAGFVEKVP 115 (150)
T ss_dssp HHHHHHHCSBCH---HHHHHHHCC----CCCTTSCCCH-HHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHhCCCCH---HHHHHHHCCCccCCcCCcccccc-chHHHHHHHHHHHHCCCEEEeC
Confidence 334444444454 99999999 7 7766889999999999999873
No 232
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=30.56 E-value=71 Score=24.24 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=34.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCccccchhhhhhcCCCCeEEEEECCCCCeEEecCCC
Q psy7686 91 LIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRKQCYIPTDVILGMFPDSSLMCLKAPYGTKLHVPSIS 165 (243)
Q Consensus 91 ~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ed~~n~~~aYVT~~Di~~~f~~qtviaIkAP~~T~leVp~p~ 165 (243)
..+|++++..| .+.+..++.+++.|..- .+.+-|..+ ++.+++ +.||+..|.+.-|+...
T Consensus 9 ~~~l~~~~~~l-------~~~i~~lkeel~~L~~~----P~~Vg~v~e---~~d~~~-~iVk~s~g~~~~V~v~~ 68 (109)
T 2wg5_A 9 MKQLEDKVEEL-------LSKNYHLENEVARLRSP----PLLVGVVSD---ILEDGR-VVVKSSTGPKFVVNTSQ 68 (109)
T ss_dssp CHHHHHHHHHH-------HHHHHHHHHHHHHHHSC----CEEEEEEEE---ECTTSC-EEEEETTSCEEEECBCT
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHhCC----CceEEEEEE---EecCCE-EEEEeCCCCEEEEEccc
Confidence 34455555555 45555666666666652 334433333 344455 67889889988887654
No 233
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=30.37 E-value=47 Score=28.81 Aligned_cols=47 Identities=9% Similarity=0.168 Sum_probs=30.4
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-cCcccc
Q psy7686 87 EQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVN-RKQCYI 134 (243)
Q Consensus 87 ~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ed~~n-~~~aYV 134 (243)
..++.++|++|+..|+.+..+++++....+ .|+.+..-... ..|-|+
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~-rLr~lL~~~~~~~~~~~i 71 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENK-DLKESLDITDSIRDYDPL 71 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCCSCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCccccccCceE
Confidence 344556788888888888888888776544 57777665443 344433
No 234
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=30.27 E-value=69 Score=25.35 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=32.8
Q ss_pred eeHHHHHhhhcccchhhhhhHHHhhhhccceeccccC
Q psy7686 33 LHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKN 69 (243)
Q Consensus 33 idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn 69 (243)
+...++|..||+ .+..+.=+.+-|+.-|+|++..+.
T Consensus 164 ~t~~~lA~~lG~-sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 164 FTVEEIANLIGS-SRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCHHHHHHHHCS-CHHHHHHHHHHHHHTTSSEECSTT
T ss_pred CCHHHHHHHhCC-cHHHHHHHHHHHHHCCcEEEcCCc
Confidence 678999999999 999999999999999999987443
No 235
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=30.07 E-value=57 Score=27.44 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=36.8
Q ss_pred HHHHHHHHH-HhhCCCCeeeHHHHHhhhcccchhhhhhHHH-hhhhccceeccc
Q psy7686 16 LLTTKFVSL-LQQAPEGVLHLKYAAENLEVKQKRRIYDITN-VLEGIGLIEKNN 67 (243)
Q Consensus 16 ~Lt~kFi~l-l~~~~~g~idL~~aa~~L~v~~KRRiYDItN-VLEgiglI~K~s 67 (243)
..-++++.. +....+..+.+..+|+.||+ .+..+|.... -+...|+|.+..
T Consensus 247 ~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi-~~~tl~~~l~~~~i~~~li~~~~ 299 (324)
T 1hqc_A 247 KRDREILEVLILRFGGGPVGLATLATALSE-DPGTLEEVHEPYLIRQGLLKRTP 299 (324)
T ss_dssp HHHHHHHHHHHHHSCSSCCCHHHHHHHTTS-CHHHHHHHTHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHhCC-CHHHHHHHHhHHHHHhcchhcCC
Confidence 334455543 44555667899999999999 9999999544 367789998654
No 236
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=30.05 E-value=79 Score=26.52 Aligned_cols=49 Identities=12% Similarity=0.187 Sum_probs=39.5
Q ss_pred HHHHHHHHHhh---CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 17 LTTKFVSLLQQ---APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 17 Lt~kFi~ll~~---~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+...+.+.+.. .++..+ +-.++|+.++| .|=-+-..++.|+.-|+|++.
T Consensus 14 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~v-Sr~tvr~Al~~L~~~G~i~~~ 66 (236)
T 3edp_A 14 IASKIKDSINRDEYKTGMLMPNETALQEIYSS-SRTTIRRAVDLLVEEGLVVRK 66 (236)
T ss_dssp HHHHHHHHHHTTSSCCCC--CCHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEE
Confidence 45556666654 466777 89999999999 999999999999999999986
No 237
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=30.03 E-value=69 Score=24.95 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=33.3
Q ss_pred eeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCce
Q psy7686 32 VLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNII 71 (243)
Q Consensus 32 ~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i 71 (243)
.+...++|..||+ .+..+.=+.+-|+.-|+|++. ++.|
T Consensus 163 ~~t~~~lA~~lg~-sr~tvsR~l~~l~~~g~I~~~-~~~i 200 (216)
T 4ev0_A 163 QIRHHELAALAGT-SRETVSRVLHALAEEGVVRLG-PGTV 200 (216)
T ss_dssp ECCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEE-TTEE
T ss_pred CCCHHHHHHHhCC-CHHHHHHHHHHHHHCCCEEec-CCEE
Confidence 4678999999999 999999999999999999875 3434
No 238
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.95 E-value=2.4e+02 Score=26.12 Aligned_cols=76 Identities=20% Similarity=0.145 Sum_probs=43.4
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-ccCc-cccchhhhhhcCCCCeEEEEECCCCCeEEecC
Q psy7686 86 LEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEV-NRKQ-CYIPTDVILGMFPDSSLMCLKAPYGTKLHVPS 163 (243)
Q Consensus 86 ~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ed~~-n~~~-aYVT~~Di~~~f~~qtviaIkAP~~T~leVp~ 163 (243)
++..++.+|+.+++.|..++..+...++.++.+++.+.+.-. .+.- .+|. .+.....+.. ..||+-.|...-|..
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~~~vg--~~~e~~d~~~-~iv~~~~~~~~~v~~ 122 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIG--QFLEPIDQNT-GIVSSTTGMSYVVRI 122 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCEEEE--EEEEEEETTE-EEEEETTSCEEEECB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceee--EEEEEccCCe-eEEecCCCCEEEEec
Confidence 566677888888888888888887777777777666555421 1111 1111 1112223333 347777777766654
Q ss_pred C
Q psy7686 164 I 164 (243)
Q Consensus 164 p 164 (243)
.
T Consensus 123 ~ 123 (428)
T 4b4t_K 123 L 123 (428)
T ss_dssp C
T ss_pred c
Confidence 3
No 239
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.31 E-value=76 Score=28.04 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=41.3
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---cCccccchhhhhhcCCCCeEEEEECCCCCeEEecCC
Q psy7686 89 SKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVN---RKQCYIPTDVILGMFPDSSLMCLKAPYGTKLHVPSI 164 (243)
Q Consensus 89 ~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ed~~n---~~~aYVT~~Di~~~f~~qtviaIkAP~~T~leVp~p 164 (243)
.++..|+.++..|.++...|-+.++.++++|..|.+.-+. -.+.|-|.-++ ..+.+++ |+. .|..+-|+..
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev---~dd~~ai-V~s-~Gr~~~V~Vs 127 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLAT---HDDDTVD-VFT-SGRKMRLTCS 127 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEE---CSSSCEE-EEC-SSSCCEECBC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEE---cCCCEEE-EEe-CCceEEEEeC
Confidence 3466777888888877777777777777777777664221 12344444332 2334443 333 5566555544
No 240
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=29.20 E-value=55 Score=25.04 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=34.1
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 8 SRFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 8 ~R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
.|....=..+....++++.+..-.-+.+.++|+..|| .|.-||
T Consensus 13 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y 55 (207)
T 2rae_A 13 RRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGI-ARRTLF 55 (207)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTS-CHHHHH
T ss_pred cchHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCC-CcchHh
Confidence 3455666677888999998866667999999999999 766666
No 241
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=28.99 E-value=34 Score=27.29 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=31.5
Q ss_pred cCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhh
Q psy7686 11 EKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYD 52 (243)
Q Consensus 11 ~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYD 52 (243)
+..=..+....++++.+..-.-+.+.++|++.|| .|.-||-
T Consensus 38 ~~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGv-s~~tlY~ 78 (214)
T 2guh_A 38 EQSRSLIVDAAGRAFATRPYREITLKDIAEDAGV-SAPLIIK 78 (214)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTS-CHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcChhhcCHHHHHHHhCC-CHHHHHH
Confidence 3334456677889998876667999999999999 7777764
No 242
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=28.99 E-value=33 Score=30.79 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=34.1
Q ss_pred CCcCcHHHHHH------HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceec
Q psy7686 9 RFEKSLGLLTT------KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEK 65 (243)
Q Consensus 9 R~~~SL~~Lt~------kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K 65 (243)
|-=+-||.++= ..+++|... .+.++++++++..++ +.-||+..|+.+|++..
T Consensus 180 kPLSdLG~~sYr~YW~~~il~~L~~~-~~~isi~~is~~T~i----~~~Dii~tL~~l~~l~~ 237 (278)
T 2pq8_A 180 KPLSDLGKLSYRSYWSWVLLENLRDF-RGTLSIKDLSQMTSI----TQNDIISTLQSLNMVKY 237 (278)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTC--------CHHHHHHHCB----CHHHHHHHHHHTTCEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHc-CCCccHHHHHHHhCC----CHHHHHHHHHHCCCEEE
Confidence 33344666652 245556543 468999999999999 67999999999999964
No 243
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=28.91 E-value=46 Score=26.23 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=33.5
Q ss_pred eeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceE
Q psy7686 32 VLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIR 72 (243)
Q Consensus 32 ~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~ 72 (243)
.+...++|..||+ .+..+.=+.+-|+.-|+|++. ++.|.
T Consensus 178 ~~t~~~lA~~lg~-sr~tvsR~l~~l~~~g~I~~~-~~~i~ 216 (227)
T 3dkw_A 178 PVAKQLVAGHLSI-QPETFSRIMHRLGDEGIIHLD-GREIS 216 (227)
T ss_dssp CSCTHHHHHHTTS-CHHHHHHHHHHHHHHTSEEES-SSCEE
T ss_pred cCCHHHHHHHhCC-CHHHHHHHHHHHHHCCcEEec-CCEEE
Confidence 3567899999999 999999999999999999886 44443
No 244
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=28.89 E-value=46 Score=29.32 Aligned_cols=45 Identities=13% Similarity=0.272 Sum_probs=35.5
Q ss_pred HHHHhhC--CCCeeeHHHHHhhhcc---c--chhhhhhHHHhhhhccceecc
Q psy7686 22 VSLLQQA--PEGVLHLKYAAENLEV---K--QKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 22 i~ll~~~--~~g~idL~~aa~~L~v---~--~KRRiYDItNVLEgiglI~K~ 66 (243)
...+... |++.+++.++|+++++ . ..++++-+..+|.++|++++.
T Consensus 50 f~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 50 FEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp HHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 4444432 2333999999999998 2 578999999999999999986
No 245
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=28.82 E-value=90 Score=26.21 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=39.7
Q ss_pred HHHHHHHHHhh---CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 17 LTTKFVSLLQQ---APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 17 Lt~kFi~ll~~---~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+...+.+.+.. .++..+ +..++|+.++| .|--+-..++.|+.-|+|.+.
T Consensus 15 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~v-Sr~tvr~Al~~L~~~G~i~~~ 67 (243)
T 2wv0_A 15 IMEQLKTQIKNGELQPDMPLPSEREYAEQFGI-SRMTVRQALSNLVNEGLLYRL 67 (243)
T ss_dssp HHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCcEEEe
Confidence 33445555544 467777 89999999999 999999999999999999986
No 246
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.64 E-value=73 Score=24.58 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=37.6
Q ss_pred HHHHHhhCCCCeeeHHHHHhhh-----cccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENL-----EVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L-----~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+++|.++ ++.++..++.+.| .+ .+=-+|-..+.|+..|+|.|..
T Consensus 19 Il~~L~~~-~~h~sa~eI~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 19 VSAALQEV-EEFRSAQELHDMLKHKGDAV-GLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHTTC-SSCEEHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHCCCEEEEE
Confidence 56777665 4588999999988 46 7889999999999999999964
No 247
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=28.54 E-value=59 Score=24.29 Aligned_cols=42 Identities=7% Similarity=-0.044 Sum_probs=33.2
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 9 RFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 9 R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
+.+..-..+....++++.+..-.-+.+.++|++.|| .|.-||
T Consensus 6 ~~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agv-s~~t~Y 47 (195)
T 3ppb_A 6 SKRTKKQAILETALQLFVSQGFHGTSTATIAREAGV-ATGTLF 47 (195)
T ss_dssp --CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTC-CHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCC-ChhHHH
Confidence 344455667788999998876678999999999999 888877
No 248
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=28.44 E-value=34 Score=26.91 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=33.9
Q ss_pred eeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceE
Q psy7686 32 VLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIR 72 (243)
Q Consensus 32 ~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~ 72 (243)
.+...++|..||+ .+..+.=+.+-|+.-|+|+.. ++.|.
T Consensus 169 ~~t~~~lA~~lg~-sr~tvsR~l~~L~~~g~I~~~-~~~i~ 207 (220)
T 3dv8_A 169 KITHETIANHLGS-HREVITRMLRYFQVEGLVKLS-RGKIT 207 (220)
T ss_dssp CCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCHHHHHHHhCC-CHHHHHHHHHHHHHCCCEEeC-CCEEE
Confidence 5678999999999 999999999999999999875 44443
No 249
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=28.43 E-value=50 Score=25.28 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=32.7
Q ss_pred cCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 11 EKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 11 ~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
+..=..+...+++++.+..-.-+.+.++|+..|| .|.-||
T Consensus 30 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agv-s~~t~Y 69 (218)
T 3dcf_A 30 NDRRTQIIKVATELFREKGYYATSLDDIADRIGF-TKPAIY 69 (218)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTC-CHHHHH
T ss_pred cchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCC-CHHHHH
Confidence 3345567777999998876678999999999999 888887
No 250
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.36 E-value=1.4e+02 Score=20.10 Aligned_cols=33 Identities=6% Similarity=0.244 Sum_probs=19.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7686 91 LIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQ 123 (243)
Q Consensus 91 ~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ 123 (243)
...|+.++..|+..-..|...|..++.++..|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666555443
No 251
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=28.09 E-value=55 Score=25.09 Aligned_cols=39 Identities=10% Similarity=0.278 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 12 KSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 12 ~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
..=..+...+++++.+..-.-+.+.++|++.|| .|.-||
T Consensus 13 ~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agv-s~~t~Y 51 (195)
T 2iu5_A 13 ITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKI-RRQTFY 51 (195)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTS-CGGGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCC-CHHHHH
Confidence 344567777899998876667999999999999 777776
No 252
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=28.09 E-value=66 Score=26.68 Aligned_cols=38 Identities=8% Similarity=0.005 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHH
Q psy7686 17 LTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITN 55 (243)
Q Consensus 17 Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItN 55 (243)
+..+|++++.+.....+++.++|+.+++ .+|.+.-+.-
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~-S~~~l~r~fk 207 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRT-NRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCc-CHHHHHHHHH
Confidence 5678999999988889999999999999 9999887763
No 253
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=27.80 E-value=73 Score=21.19 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHH-HhhCCCCeeeHHHHHhhhcccchhhhhhHHH
Q psy7686 13 SLGLLTTKFVSL-LQQAPEGVLHLKYAAENLEVKQKRRIYDITN 55 (243)
Q Consensus 13 SL~~Lt~kFi~l-l~~~~~g~idL~~aa~~L~v~~KRRiYDItN 55 (243)
.+..+-+.+|.- +... | +...||..||+ .++-||.-..
T Consensus 17 ~l~~~Er~~I~~aL~~~--g--n~~~aA~~LGI-sr~tL~rklk 55 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY--P--STRKLAQRLGV-SHTAIANKLK 55 (61)
T ss_dssp SCSHHHHHHHHHHHHHS--C--SHHHHHHHTTS-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--C--CHHHHHHHhCC-CHHHHHHHHH
Confidence 344555666644 4444 3 67899999999 9999987654
No 254
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.72 E-value=77 Score=24.77 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=37.5
Q ss_pred HHHHHhhCCCCeeeHHHHHhhh-----cccchhhhhhHHHhhhhccceeccc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENL-----EVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L-----~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+++|.++ ++.++..++.+.| ++ .+=-+|-..+.|+..|+|.|..
T Consensus 32 IL~~l~~~-~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 32 VVSVLYRS-GTHLSPEEITHSIRQKDKNT-SISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCC-CHhhHHHHHHHHHHCCcEEEEE
Confidence 55666665 4578999999998 57 7889999999999999999964
No 255
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.70 E-value=1.2e+02 Score=22.58 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7686 99 SDMRNHEAVIDEHIRKCQQSLR 120 (243)
Q Consensus 99 ~~L~~~E~~LD~~I~~~~~~l~ 120 (243)
..|...-..|++-|..+++.+.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 256
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=27.29 E-value=1.7e+02 Score=21.66 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=27.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7686 92 IELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEE 125 (243)
Q Consensus 92 ~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ed 125 (243)
..|.+|+..|+..+..||.-|..++.....+-..
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 3566788889999999999999988888887664
No 257
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.21 E-value=1.3e+02 Score=20.41 Aligned_cols=32 Identities=3% Similarity=0.288 Sum_probs=21.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7686 91 LIELRDEISDMRNHEAVIDEHIRKCQQSLRNI 122 (243)
Q Consensus 91 ~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l 122 (243)
...|..++..|+.+-..|...|..+..++..|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777776666777776666665554
No 258
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=27.14 E-value=38 Score=27.04 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=32.1
Q ss_pred cCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 11 EKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 11 ~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
+..=..+....++++.+..-.-+.+.++|++.|| .|.-||
T Consensus 12 ~~~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agv-s~~t~Y 51 (231)
T 2qib_A 12 EERRQQLIGVALDLFSRRSPDEVSIDEIASAAGI-SRPLVY 51 (231)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTS-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCC-CHHHHH
Confidence 3334456677889998876668999999999999 888887
No 259
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=26.97 E-value=69 Score=24.37 Aligned_cols=43 Identities=7% Similarity=-0.015 Sum_probs=33.9
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 8 SRFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 8 ~R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
.|.+..-..+....++++.+..-.-+.+.++|+..|| .|.-||
T Consensus 12 ~~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agv-s~~t~Y 54 (213)
T 2qtq_A 12 LETPGARDLLLQTASNIMREGDVVDISLSELSLRSGL-NSALVK 54 (213)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCC-CHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCC-ChhhHh
Confidence 3445566678888999998866667999999999999 766666
No 260
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=26.83 E-value=2.6e+02 Score=22.81 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=65.0
Q ss_pred CCcCcHHHHHHHHHHHHhh-CCCCe-------eeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEeccCCCC
Q psy7686 9 RFEKSLGLLTTKFVSLLQQ-APEGV-------LHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKALKNKN 80 (243)
Q Consensus 9 R~~~SL~~Lt~kFi~ll~~-~~~g~-------idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~G~~~~~ 80 (243)
+++.+...|-+.|-.+... .||.. .-|++|=+.|.=..+|+.||..= ..|+.+-.-.. +....
T Consensus 27 ~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l-~~g~~~~~e~~-------~~~~~- 97 (181)
T 3uo3_A 27 IWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL-LRNIDLTQEQT-------SNEVT- 97 (181)
T ss_dssp CSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH-HHCCCTTSHHH-------HHHHH-
T ss_pred CCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH-HhCCCcccccc-------ccccc-
Confidence 3688899999999999865 56643 45888888887657899999731 14554432110 00000
Q ss_pred chhhhHHHHHhHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7686 81 EEEYDLEQSKLIELRDEIS------DMRNHEAVIDEHIRKCQQSLRNIQEE 125 (243)
Q Consensus 81 ~~~~~~~~~~~~~Lk~El~------~L~~~E~~LD~~I~~~~~~l~~l~ed 125 (243)
....+...++-+++++++ +|.....++++.|..|.++|...++.
T Consensus 98 -~~d~~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 147 (181)
T 3uo3_A 98 -TSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYND 147 (181)
T ss_dssp -HTCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -cCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 001133344444555544 35555666777788887888777764
No 261
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.79 E-value=76 Score=29.55 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=22.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7686 91 LIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQE 124 (243)
Q Consensus 91 ~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~e 124 (243)
...|++|+..|.++.+.|++.|+..+..++.+.+
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKE 38 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777776666666555
No 262
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.73 E-value=1.4e+02 Score=21.16 Aligned_cols=35 Identities=9% Similarity=0.084 Sum_probs=23.6
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7686 88 QSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNI 122 (243)
Q Consensus 88 ~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l 122 (243)
..-+..|+.++..|..+-..|.+.+..+.++|..|
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466777777777776677777777777766654
No 263
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=26.54 E-value=26 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=17.7
Q ss_pred HHHHHhhhhhhhccCccccchhhhhhcCCC
Q psy7686 116 QQSLRNIQEEEVNRKQCYIPTDVILGMFPD 145 (243)
Q Consensus 116 ~~~l~~l~ed~~n~~~aYVT~~Di~~~f~~ 145 (243)
.+.++.|...... -.|+||++|...|++
T Consensus 8 ~~~~k~Li~~gK~--~G~lTy~EI~d~l~~ 35 (72)
T 2k6x_A 8 ERRIKKLISLGKK--KGYITYEDIDKAFPP 35 (72)
T ss_dssp HHHHHHHHHHHHH--HSSCBHHHHHHHCSC
T ss_pred HHHHHHHHHHHhH--cCCccHHHHHHhCcc
Confidence 3455555553332 358999999877655
No 264
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=26.49 E-value=29 Score=25.93 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 12 KSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 12 ~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
..-..+..-+++++.+.+-..+.+.++|++.|| .|.-||
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agv-s~~t~Y 50 (177)
T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANV-GRSTFY 50 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCC-CHHHHT
T ss_pred HHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCC-cHhhHH
Confidence 344456677889998866668999999999999 777776
No 265
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=26.48 E-value=53 Score=24.68 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=32.7
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 9 RFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 9 R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
|....=..+....++++.+..-.-+.+.++|++.|| .|.-||
T Consensus 5 r~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agv-s~~t~Y 46 (183)
T 1zk8_A 5 RIGLTLQKIVETAAEIADANGVQEVTLASLAQTLGV-RSPSLY 46 (183)
T ss_dssp -CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTS-CHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhcCccccCHHHHHHHcCC-CchHHH
Confidence 444555677888999998866667999999999999 766666
No 266
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=26.38 E-value=36 Score=32.41 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhcccee
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIE 64 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~ 64 (243)
.+.+|.- .+|..+|-++|+++++ .=++++++.+.|..-|||+
T Consensus 392 ~l~~L~~-~dG~~slldia~~~~~-~~~~~~~~~~~l~~~~l~~ 433 (435)
T 3k9t_A 392 MFWVLNM-SDGKNSLLDIAYKSGM-EFRRIKYAADALYRVELLK 433 (435)
T ss_dssp HHHHHHH-CEEEEEHHHHHHHHTC-CHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHh-ccCCccHHHHHHHhCc-CHHHHHHHHHHHHHccCcc
Confidence 3334433 5999999999999999 9999999999999999987
No 267
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=26.21 E-value=61 Score=26.13 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=31.7
Q ss_pred eeeHHHHHhhhcccchh-hhhhHHHhhhhccceeccc
Q psy7686 32 VLHLKYAAENLEVKQKR-RIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 32 ~idL~~aa~~L~v~~KR-RiYDItNVLEgiglI~K~s 67 (243)
.+...++|..||+ .+| .+.=+.+-|+.-|+|++..
T Consensus 169 ~~t~~~lA~~lG~-sr~etvsR~l~~l~~~glI~~~~ 204 (238)
T 2bgc_A 169 NLTMQELGYSSGI-AHSSAVSRIISKLKQEKVIVYKN 204 (238)
T ss_dssp CCCHHHHHHHTTC-CCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHhCC-ChHHHHHHHHHHHHHCCCEEecC
Confidence 4667899999999 997 9999999999999999874
No 268
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=26.21 E-value=73 Score=24.20 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 13 SLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 13 SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
.=..+..-.++++.+..-.-+++.++|+..|| .|.-||
T Consensus 8 ~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agv-s~~t~Y 45 (195)
T 2dg7_A 8 AEQRLKRAALELYSEHGYDNVTVTDIAERAGL-TRRSYF 45 (195)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccCHHHHHHHhCC-CHHHHH
Confidence 33456677888998866667999999999999 777777
No 269
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.02 E-value=47 Score=25.87 Aligned_cols=41 Identities=7% Similarity=-0.005 Sum_probs=31.5
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 9 RFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 9 R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
|.+..=..+....++++.+.. .-+.+.++|+..|| .|.-||
T Consensus 17 ~~~~~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGv-s~~tlY 57 (215)
T 2hku_A 17 SGRQTRDALFTAATELFLEHG-EGVPITQICAAAGA-HPNQVT 57 (215)
T ss_dssp ---CHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTC-CHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCC-CHHHHH
Confidence 344555567777888998877 88999999999999 777777
No 270
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=25.64 E-value=79 Score=25.58 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=34.1
Q ss_pred eeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceE
Q psy7686 32 VLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIR 72 (243)
Q Consensus 32 ~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~ 72 (243)
.+...++|..||+ .+..+.=+.+-|+.-|+|++.+ +.|.
T Consensus 177 ~~t~~~iA~~lG~-sr~tvsR~l~~L~~~g~I~~~~-~~i~ 215 (250)
T 3e6c_C 177 PLSQKSIGEITGV-HHVTVSRVLASLKRENILDKKK-NKII 215 (250)
T ss_dssp CCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEECS-SEEE
T ss_pred CCCHHHHHHHhCC-cHHHHHHHHHHHHHCCCeEeCC-CEEE
Confidence 4678999999999 9999999999999999999874 3444
No 271
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=25.37 E-value=80 Score=26.15 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=31.6
Q ss_pred eeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 33 LHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 33 idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
....++|+.|++ .+--+..+++-|+.-|+|++...
T Consensus 25 ~~~~~La~~l~v-s~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 25 PLRARIAERLDQ-SGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp CCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEECTT
T ss_pred CcHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEeCC
Confidence 345999999999 99999999999999999999753
No 272
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=25.19 E-value=81 Score=25.86 Aligned_cols=42 Identities=26% Similarity=0.202 Sum_probs=33.4
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 9 RFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 9 R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
|...+-..+....++++.+..-.-+++..+|+.+|| .+.-||
T Consensus 13 ~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGv-s~~tlY 54 (237)
T 2hxo_A 13 QEPLSRERIVGAAVELLDTVGERGLTFRALAERLAT-GPGAIY 54 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTS-CGGGGG
T ss_pred CCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCC-ChHHHH
Confidence 445667778888999999876678999999999999 777777
No 273
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.18 E-value=1.4e+02 Score=26.03 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=35.6
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7686 86 LEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEE 125 (243)
Q Consensus 86 ~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ed 125 (243)
++..++..|...++++.+.|+.....|+..+++|++|-+.
T Consensus 10 ~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 10 QLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888999999999999999999999999999998775
No 274
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=25.16 E-value=56 Score=27.65 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=36.3
Q ss_pred CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceeccccCce
Q psy7686 28 APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNII 71 (243)
Q Consensus 28 ~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i 71 (243)
.++..+ +-.++|+.++| .|=-+-..++.|+.-|+|.+.++..|
T Consensus 31 ~~g~~lPse~~La~~~~v-Sr~tvr~Al~~L~~~G~i~~~g~Gt~ 74 (248)
T 3f8m_A 31 RIGDPFPAEREIAEQFEV-ARETVRQALRELLIDGRVERRGRTTV 74 (248)
T ss_dssp CTTCBCCCHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred CCCCcCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEeCCCEEE
Confidence 456667 89999999999 99899999999999999999544433
No 275
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=25.08 E-value=87 Score=20.06 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=28.9
Q ss_pred HHHhhCCCCeeeHHHHHhhh-----cccchhhhhhHHHhhhhccceecc
Q psy7686 23 SLLQQAPEGVLHLKYAAENL-----EVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 23 ~ll~~~~~g~idL~~aa~~L-----~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
.++.. ++.++..++++.| +| ..+-||-..+ .+|++ |.
T Consensus 12 ~ll~~--~~~~t~~el~~~l~~~~~~v-s~~Tv~R~L~---~lg~v-~~ 53 (64)
T 2p5k_A 12 EIITS--NEIETQDELVDMLKQDGYKV-TQATVSRDIK---ELHLV-KV 53 (64)
T ss_dssp HHHHH--SCCCSHHHHHHHHHHTTCCC-CHHHHHHHHH---HHTCE-EE
T ss_pred HHHHc--CCCCCHHHHHHHHHHhCCCc-CHHHHHHHHH---HcCCE-EE
Confidence 44444 4679999999999 99 9999997666 66787 65
No 276
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=24.91 E-value=56 Score=24.35 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 12 KSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 12 ~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
..=..+....++++.+..-.-+.+.++|++.|| .|.-||
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y 46 (188)
T 3qkx_A 8 DLAEQIFSATDRLMAREGLNQLSMLKLAKEANV-AAGTIY 46 (188)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTC-CHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCC-CcchHH
Confidence 333456777889998876677999999999999 888888
No 277
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=24.72 E-value=77 Score=22.59 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=13.5
Q ss_pred HHHHHHHhhCCCCeeeHHHHHhhhcc
Q psy7686 19 TKFVSLLQQAPEGVLHLKYAAENLEV 44 (243)
Q Consensus 19 ~kFi~ll~~~~~g~idL~~aa~~L~v 44 (243)
-+||..++.. + ++|.++..-|..
T Consensus 6 L~~I~~lr~l-G--fsL~eIk~~l~~ 28 (99)
T 1q08_A 6 LKFIRHARQL-G--FSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHT-T--CCHHHHHHHHHH
T ss_pred HHHHHHHHHC-C--CCHHHHHHHHHH
Confidence 3566666653 2 566666666654
No 278
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=24.63 E-value=1.1e+02 Score=25.37 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=33.0
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
+......++|+.|++ .+--+-.+++-|+.-|+|++...
T Consensus 22 ~~~~~~~~la~~l~v-s~~tvs~~l~~Le~~GlV~r~~~ 59 (226)
T 2qq9_A 22 GVTPLRARIAERLEQ-SGPTVSQTVARMERDGLVVVASD 59 (226)
T ss_dssp TCCCBHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEECTT
T ss_pred CCCccHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEeCC
Confidence 334466999999999 99999999999999999999753
No 279
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=24.25 E-value=1.2e+02 Score=25.31 Aligned_cols=48 Identities=23% Similarity=0.251 Sum_probs=38.8
Q ss_pred HHHHHHHHhh---CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 18 TTKFVSLLQQ---APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 18 t~kFi~ll~~---~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
...+.+.+.. .|+..+ +..++|+.++| .|--+-...+.|+.-|+|.+.
T Consensus 11 ~~~l~~~I~~g~~~~g~~lPse~~La~~~~v-Sr~tvr~Al~~L~~~g~i~~~ 62 (239)
T 3bwg_A 11 ATEIETYIEEHQLQQGDKLPVLETLMAQFEV-SKSTITKSLELLEQKGAIFQV 62 (239)
T ss_dssp HHHHHHHHHHTTCCTTCBCCCHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCcEEEe
Confidence 3344444433 467778 89999999999 999999999999999999986
No 280
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=24.23 E-value=2.1e+02 Score=20.87 Aligned_cols=39 Identities=10% Similarity=0.150 Sum_probs=24.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7686 86 LEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQE 124 (243)
Q Consensus 86 ~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~e 124 (243)
++..-.++|+.=+..|+.++..|+.-|..++....+|..
T Consensus 36 EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 36 DLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444456666667777777777777777766666544
No 281
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=24.18 E-value=69 Score=24.07 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=32.7
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 9 RFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 9 R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
|.+..=..+....++++.+..-.-+.+.++|+..|| .|.-||
T Consensus 8 ~~~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agv-s~~t~Y 49 (196)
T 3he0_A 8 PAVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGV-AAGTIY 49 (196)
T ss_dssp ---CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTS-CHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCC-CcchHH
Confidence 445555677888899998876667999999999999 888887
No 282
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.17 E-value=71 Score=25.12 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=14.7
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7686 89 SKLIELRDEISDMRNHEAVIDEHIRKCQQS 118 (243)
Q Consensus 89 ~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~ 118 (243)
.+...|+++++.|++..+.|+..|...++.
T Consensus 102 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 102 QQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554443
No 283
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=24.02 E-value=57 Score=27.27 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhh
Q psy7686 17 LTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEG 59 (243)
Q Consensus 17 Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEg 59 (243)
+..+++.++.+..+..+++.++|+.+++ .+|.|.-+..-.-|
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~-s~~~l~r~f~~~~g 45 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGY-SKWHLQRMFKDVTG 45 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSS-CHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCc-CHHHHHHHHHHHHC
Confidence 4577899999888899999999999999 88888777544333
No 284
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.94 E-value=1.8e+02 Score=21.23 Aligned_cols=39 Identities=8% Similarity=0.234 Sum_probs=30.6
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7686 86 LEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQE 124 (243)
Q Consensus 86 ~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~e 124 (243)
.+..++..++.++..|......+...|..+...+..+..
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345567778888888888888888888888888877754
No 285
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=23.74 E-value=60 Score=25.20 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=32.7
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 10 FEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 10 ~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
.+..=..+....++++.+..-.-+.+.++|+..|| .|.-||
T Consensus 26 ~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agv-s~~t~Y 66 (215)
T 2qko_A 26 NPERRAALVNAAIEVLAREGARGLTFRAVDVEANV-PKGTAS 66 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSS-TTTCHH
T ss_pred cHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCC-CcchHH
Confidence 44455567778999998876677999999999999 777777
No 286
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.59 E-value=45 Score=19.55 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=21.8
Q ss_pred eeHHHHHhhhcccchhhhhhHHHhhhh
Q psy7686 33 LHLKYAAENLEVKQKRRIYDITNVLEG 59 (243)
Q Consensus 33 idL~~aa~~L~v~~KRRiYDItNVLEg 59 (243)
+...++|+.|+| .+.-||-+++-.+.
T Consensus 22 ~s~~~IA~~lgi-s~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 22 VSLHEMSRKISR-SRHCIRVYLKDPVS 47 (51)
T ss_dssp CCHHHHHHHHTC-CHHHHHHHHHCSTT
T ss_pred CCHHHHHHHHCc-CHHHHHHHHhhHHh
Confidence 589999999999 99999988765543
No 287
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.54 E-value=1.1e+02 Score=22.25 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=31.4
Q ss_pred cCcHHHHHHHHHHHHhh-CCCCee----------eHHHHHhhhcccchhhhhhH
Q psy7686 11 EKSLGLLTTKFVSLLQQ-APEGVL----------HLKYAAENLEVKQKRRIYDI 53 (243)
Q Consensus 11 ~~SL~~Lt~kFi~ll~~-~~~g~i----------dL~~aa~~L~v~~KRRiYDI 53 (243)
..+...+-+.|..+... .||..- .|++|=+.|.-..+|+.||-
T Consensus 28 ~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 81 (99)
T 2yua_A 28 TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDR 81 (99)
T ss_dssp TCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 56778888889888754 565432 36777777776578999995
No 288
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=23.51 E-value=70 Score=24.43 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 15 GLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 15 ~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
..+....++++.+..-.-+.+..+|++.|| .|.-||
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agv-s~~t~Y 42 (185)
T 2yve_A 7 EMILRTAIDYIGEYSLETLSYDSLAEATGL-SKSGLI 42 (185)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHCC-CHHHHH
T ss_pred HHHHHHHHHHHHHcChhhccHHHHHHHhCC-ChHHHH
Confidence 346677889998877678999999999999 777777
No 289
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=23.42 E-value=81 Score=22.57 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=32.5
Q ss_pred CCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecccc
Q psy7686 30 EGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNK 68 (243)
Q Consensus 30 ~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sK 68 (243)
.|.....++|+.||+ .+--++=-+++|+.. +|.+...
T Consensus 39 ~~~~~~~ela~~l~i-s~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 39 HKALNVTQIIQILKL-PQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp HSCEEHHHHHHHHTC-CHHHHHHHHHHHBTT-TBEEEEE
T ss_pred CCCcCHHHHHHHHCc-CHHHHHHHHHHHHHH-hhhheEe
Confidence 356899999999999 999999999999999 9986533
No 290
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.41 E-value=1.7e+02 Score=21.38 Aligned_cols=33 Identities=6% Similarity=0.339 Sum_probs=19.4
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7686 88 QSKLIELRDEISDMRNHEAVIDEHIRKCQQSLR 120 (243)
Q Consensus 88 ~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~ 120 (243)
..++..++.++..|......++..+..+...++
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666665555555
No 291
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=23.21 E-value=62 Score=24.35 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=40.6
Q ss_pred HHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceE
Q psy7686 18 TTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIR 72 (243)
Q Consensus 18 t~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~ 72 (243)
-.+.+..+.. ...+..++|..+++ .+..+-++...|..-|.+.+...+.|.
T Consensus 9 ~~~i~~~~~~---~p~~~~~la~~~~~-~~~~~~~~l~~l~~~G~l~~i~~~~~~ 59 (121)
T 2pjp_A 9 WQKAEPLFGD---EPWWVRDLAKETGT-DEQAMRLTLRQAAQQGIITAIVKDRYY 59 (121)
T ss_dssp HHHHGGGCSS---SCEEHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEEETTEEE
T ss_pred HHHHHHHHHh---CCCCHHHHHHHhCC-CHHHHHHHHHHHHHCCCEEEecCCceE
Confidence 3445555533 44699999999999 999999999999999999998766544
No 292
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=23.16 E-value=59 Score=19.45 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=19.5
Q ss_pred eeHHHHHhhhcccchhhhhhHHH
Q psy7686 33 LHLKYAAENLEVKQKRRIYDITN 55 (243)
Q Consensus 33 idL~~aa~~L~v~~KRRiYDItN 55 (243)
....++|..||| .+.-||-+.+
T Consensus 22 ~s~~~ia~~lgv-s~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGI-GVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSC-CHHHHHHHSC
T ss_pred CCHHHHHHHHCC-CHHHHHHHHH
Confidence 789999999999 9999997754
No 293
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=23.07 E-value=1.6e+02 Score=21.52 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCccccchhhhhhcCCCCeEEEEEC
Q psy7686 86 LEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRKQCYIPTDVILGMFPDSSLMCLKA 153 (243)
Q Consensus 86 ~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ed~~n~~~aYVT~~Di~~~f~~qtviaIkA 153 (243)
+...+...|+.|+..-+...+..=++-+.++-+|..+.... |.+.++.++.+..+--|+-
T Consensus 16 e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRqad--------t~~qvr~Il~e~~l~di~~ 75 (79)
T 1tu3_F 16 EEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQAD--------SLERIRAILNDTKLTDINQ 75 (79)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--------SHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHccCccchHhh
Confidence 45667889999999999999988888888888888776632 4566666766655544443
No 294
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=23.05 E-value=44 Score=25.45 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=31.9
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 9 RFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 9 R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
|.+..=..+....++++.+..-.-+.+.++|+..|| .|.-||
T Consensus 9 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agv-s~~t~Y 50 (202)
T 3lwj_A 9 QNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEV-GTGTFY 50 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCS-CHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCC-CchhHH
Confidence 344445557777889998866667999999999999 666666
No 295
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=23.02 E-value=1.6e+02 Score=23.99 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=32.1
Q ss_pred eeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 32 VLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 32 ~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+...++|..||+ .+..+.=+.+-|+.-|+|++..
T Consensus 217 ~lt~~~lA~~lG~-sr~tvsR~l~~L~~~GlI~~~~ 251 (260)
T 3kcc_A 217 KITRQEIGQIVGC-SRETVGRILKMLEDQNLISAHG 251 (260)
T ss_dssp ECCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEECS
T ss_pred cCCHHHHHHHhCC-CHHHHHHHHHHHHHCCCEEEcC
Confidence 4677999999999 9999999999999999999864
No 296
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=23.01 E-value=86 Score=23.56 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 14 LGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 14 L~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
=..+....++++.+..-.-+++.++|+..|| .|.-||
T Consensus 19 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agv-s~~t~Y 55 (206)
T 3kz9_A 19 KQQLMEIALEVFARRGIGRGGHADIAEIAQV-SVATVF 55 (206)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCHHHHHHHHTS-CHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHhCC-CHHHHH
Confidence 3446667888998876677999999999999 776666
No 297
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=22.94 E-value=57 Score=24.40 Aligned_cols=42 Identities=5% Similarity=0.093 Sum_probs=31.5
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 9 RFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 9 R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
|.+..=..+....++++.+..-.-+++.++|++.|| .|.-||
T Consensus 7 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y 48 (196)
T 3col_A 7 KDMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGI-AQSNVY 48 (196)
T ss_dssp ---CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTS-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCC-cHHHHH
Confidence 344455567777889998866667999999999999 777776
No 298
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.89 E-value=2.1e+02 Score=21.23 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7686 98 ISDMRNHEAVIDEHIRKCQQSLRNIQEE 125 (243)
Q Consensus 98 l~~L~~~E~~LD~~I~~~~~~l~~l~ed 125 (243)
|..-.++-+.|...|...++.|++|..+
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3333333344444555555666666543
No 299
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=22.77 E-value=25 Score=27.67 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceec
Q psy7686 14 LGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEK 65 (243)
Q Consensus 14 L~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K 65 (243)
+..+-++.+..++ +++.+...++|+.||| .+--+...++.|+.-|+|++
T Consensus 11 ~d~l~~~Il~~l~--~~~~ls~~eLa~~lgv-Sr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 11 LDRIDRNILNELQ--KDGRISNVELSKRVGL-SPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHHHHH--HCSSCCTTGGGTSSSC-CTTTSSSTHHHHHHHTSEEE
T ss_pred hhHHHHHHHHHHH--hCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCcEEE
Confidence 3344556666554 4677899999999999 99999999999999999986
No 300
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=22.77 E-value=1.4e+02 Score=18.14 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=13.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q psy7686 92 IELRDEISDMRNHEAVIDEHIRKC 115 (243)
Q Consensus 92 ~~Lk~El~~L~~~E~~LD~~I~~~ 115 (243)
..|++|+..|..+-..|.--|..+
T Consensus 5 aalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555555444433
No 301
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=22.75 E-value=50 Score=25.23 Aligned_cols=43 Identities=14% Similarity=0.016 Sum_probs=32.3
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 8 SRFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 8 ~R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
.|.+..-..+....++++.+..-.-+++.++|+..|| .|.-||
T Consensus 10 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agv-s~~t~Y 52 (212)
T 3knw_A 10 KKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGV-PKGSFY 52 (212)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTC-CHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCC-ChHHHH
Confidence 3445555667777888998866667999999999999 666666
No 302
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=22.68 E-value=84 Score=24.17 Aligned_cols=40 Identities=13% Similarity=0.039 Sum_probs=31.8
Q ss_pred cCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 11 EKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 11 ~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
+..=..+....++++.+..-.-+.+.++|+..|| .|.-||
T Consensus 29 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGv-s~~t~Y 68 (222)
T 3bru_A 29 SLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARV-PKGSFY 68 (222)
T ss_dssp GGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTC-CHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCC-Ccchhh
Confidence 4445667778999998876678999999999999 666665
No 303
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=22.68 E-value=3e+02 Score=22.09 Aligned_cols=101 Identities=17% Similarity=0.264 Sum_probs=56.9
Q ss_pred CcCcHHHHHHHHHHHHhh-CCCCe---------------eeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEE
Q psy7686 10 FEKSLGLLTTKFVSLLQQ-APEGV---------------LHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRW 73 (243)
Q Consensus 10 ~~~SL~~Lt~kFi~ll~~-~~~g~---------------idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W 73 (243)
..-+...|-+.|..+... .||.. .-+++|=+.|.=..+|+.||.. |.|+.+-...
T Consensus 13 a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~--l~g~~~~~e~------- 83 (171)
T 1fpo_A 13 YQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS--LHGFDLASEQ------- 83 (171)
T ss_dssp SCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH--TTTCCTTCSS-------
T ss_pred CCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH--hcCCCccccc-------
Confidence 344788899999888754 45432 2356666666644788899984 5566552211
Q ss_pred eccCCCCchhhhHHHHHhHhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7686 74 KALKNKNEEEYDLEQSKLIELRDEIS---------DMRNHEAVIDEHIRKCQQSLRNIQEE 125 (243)
Q Consensus 74 ~G~~~~~~~~~~~~~~~~~~Lk~El~---------~L~~~E~~LD~~I~~~~~~l~~l~ed 125 (243)
....+. +...++-+++++|. .|.....++++.++.+.++|...++.
T Consensus 84 ---~~~~d~---~fLme~me~rE~lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 138 (171)
T 1fpo_A 84 ---HTVRDT---AFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDN 138 (171)
T ss_dssp ---SCCSCH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---cccCCH---HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 011111 22222223333333 25555666777777777777776653
No 304
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=22.63 E-value=62 Score=25.66 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=33.8
Q ss_pred eeeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceE
Q psy7686 32 VLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIR 72 (243)
Q Consensus 32 ~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~ 72 (243)
.+...++|..||+ .+..+.=+.+-|+.-|+|++.. +.|.
T Consensus 175 ~~t~~~iA~~lg~-sr~tvsR~l~~L~~~g~I~~~~-~~i~ 213 (231)
T 3e97_A 175 PLGTQDIMARTSS-SRETVSRVLKRLEAHNILEVSP-RSVT 213 (231)
T ss_dssp CCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEECS-SCEE
T ss_pred CCCHHHHHHHhCC-cHHHHHHHHHHHHHCCcEEecC-CEEE
Confidence 4678999999999 9999999999999999998763 4443
No 305
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=22.62 E-value=77 Score=24.11 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 12 KSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 12 ~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
..=..+....++++.+..-. +++.++|+..|| .|.-||
T Consensus 15 ~~r~~Il~aA~~lf~~~G~~-~s~~~IA~~agv-s~~tlY 52 (194)
T 2q24_A 15 RNRDKILAAAVRVFSEEGLD-AHLERIAREAGV-GSGTLY 52 (194)
T ss_dssp -CHHHHHHHHHHHHHHHCTT-CCHHHHHHHTTC-CHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcC-CCHHHHHHHhCC-ChHHHH
Confidence 34456777788888776556 999999999999 777777
No 306
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=22.53 E-value=1.6e+02 Score=22.56 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=32.2
Q ss_pred eeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 32 VLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 32 ~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
.+...++|..||+ .+..+.=+.+-|+.-|+|+..+
T Consensus 167 ~~t~~~iA~~lg~-sr~tvsR~l~~L~~~g~I~~~~ 201 (210)
T 3ryp_A 167 KITRQEIGQIVGC-SRETVGRILKMLEDQNLISAHG 201 (210)
T ss_dssp ECCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCC-cHHHHHHHHHHHHHCCcEEeCC
Confidence 4677999999999 9999999999999999999764
No 307
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=22.35 E-value=93 Score=23.82 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=32.4
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 9 RFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 9 R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
|.+..=..+....++++.+..-.-++++++|+..|| .|.-||
T Consensus 11 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agv-s~~t~Y 52 (203)
T 3ccy_A 11 DYENIRDTIIERAAAMFARQGYSETSIGDIARACEC-SKSRLY 52 (203)
T ss_dssp -CTTHHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTC-CGGGGT
T ss_pred hhhhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCC-CcCeee
Confidence 344445567777888998876678999999999999 777776
No 308
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.07 E-value=25 Score=32.02 Aligned_cols=99 Identities=5% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCccccchhhhhhcCCCCeEEEEECCCCCeEEecCCCC
Q psy7686 87 EQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRKQCYIPTDVILGMFPDSSLMCLKAPYGTKLHVPSIST 166 (243)
Q Consensus 87 ~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l~ed~~n~~~aYVT~~Di~~~f~~qtviaIkAP~~T~leVp~p~~ 166 (243)
+..++..|++.|..++..-..|...++.++.+|.+|.+ ..++.+.-+......++-.-..++....++.....
T Consensus 2 ~~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~-------~i~~l~~~~~~~~~~~~~~~~~~~~sC~~i~~~g~ 74 (319)
T 1fzc_C 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKE-------KVAQLEAQCQEPCKDTVQIHDITGKDCQDIANKGA 74 (319)
T ss_dssp --------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHSCSCCEESCCCCSCCBSSHHHHHTTTC
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhcccccccccCCCCCcCHHHHHhcCC
Q ss_pred C-CceEEEEEecCCCCCCeEEEEecCCCCC
Q psy7686 167 D-ENKIKLHVKSSHPEEPVNILLLDTEPKK 195 (243)
Q Consensus 167 ~-~~~yqi~LkS~~~~GpI~V~L~~~~~~~ 195 (243)
. .+-|.|+..... .|+.|| |..+..+
T Consensus 75 ~~SGvY~I~p~~~~--~pf~Vy-CDm~t~g 101 (319)
T 1fzc_C 75 KQSGLYFIKPLKAN--QQFLVY-CEIDGSG 101 (319)
T ss_dssp CCCEEEEECCTTCS--SCEEEE-EEECTTS
T ss_pred CCCeEEEEecCCCC--CcEEEE-EeeecCC
No 309
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=21.91 E-value=67 Score=23.95 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 13 SLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 13 SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
.=..+....++++.+..-.-+.+.++|+..|| .|.-||
T Consensus 7 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agv-s~~t~Y 44 (191)
T 1sgm_A 7 SREKILHTASRLSQLQGYHATGLNQIVKESGA-PKGSLY 44 (191)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCC-CSCHHH
T ss_pred hHHHHHHHHHHHHHHcCccccCHHHHHHHHCC-CchhHH
Confidence 33456777888998876677999999999999 666555
No 310
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=21.88 E-value=65 Score=24.93 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=33.2
Q ss_pred eeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceE
Q psy7686 33 LHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIR 72 (243)
Q Consensus 33 idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~ 72 (243)
+...++|..||+ .+..+.=+.+-|+.-|+|++.. +.|.
T Consensus 165 ~t~~~lA~~lg~-sr~tvsR~l~~l~~~g~I~~~~-~~i~ 202 (207)
T 2oz6_A 165 ITRQEIGRIVGC-SREMVGRVLKSLEEQGLVHVKG-KTMV 202 (207)
T ss_dssp CCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred cCHHHHHHHhCC-CHHHHHHHHHHHHHCCCEEecC-CEEE
Confidence 677999999999 9999999999999999998764 4443
No 311
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=21.71 E-value=85 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=29.4
Q ss_pred CeeeHHHHHhhhcccchhhhhhHHHhhhhcccee
Q psy7686 31 GVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIE 64 (243)
Q Consensus 31 g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~ 64 (243)
+.-++..+.+.-|. .||-|.|.+..|.++|+.-
T Consensus 32 ~~~nvp~L~~~TGm-PRRTiQd~I~aL~elgI~~ 64 (117)
T 3ke2_A 32 ARHNLLSLGKLTGM-PRRTLQDAIASFADIGIEV 64 (117)
T ss_dssp SCCCHHHHHHHHCC-CHHHHHHHHHTGGGGTCEE
T ss_pred CCCCHHHHHHHHCC-CHhHHHHHHHHhhhCCeEE
Confidence 44499999999999 9999999999999999854
No 312
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=21.62 E-value=66 Score=24.56 Aligned_cols=41 Identities=7% Similarity=-0.013 Sum_probs=32.8
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 10 FEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 10 ~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
....=..+....++++.+..-.-+.+.++|+..|| .|.-||
T Consensus 7 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agv-s~~t~Y 47 (193)
T 2dg8_A 7 DPQRRERILAATLDLIAEEGIARVSHRRIAQRAGV-PLGSMT 47 (193)
T ss_dssp CTTHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTS-CTHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhChhhccHHHHHHHhCC-Cchhhh
Confidence 33445567788999998866667999999999999 877777
No 313
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=21.45 E-value=1.1e+02 Score=27.90 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=36.9
Q ss_pred HHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 20 KFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 20 kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+.++++.. .+.+....+++.+++ .++-..-.++-|...|++++.+
T Consensus 301 ~ll~~l~~--~p~~t~~~~~~~~~~-S~~TA~r~L~~L~e~GiL~~~~ 345 (373)
T 3eqx_A 301 ELVQVIFE--QPYCRIQNLVESGLA-KRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp HHHHHHHH--CSEEEHHHHHHTSSS-CHHHHHHHHHHHHHTTSCEEC-
T ss_pred HHHHHHHH--CCCccHHHHHHHhCc-CHHHHHHHHHHHHHCCcEEEeC
Confidence 34555555 457899999999999 9999999999999999999863
No 314
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=21.33 E-value=48 Score=26.38 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 13 SLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 13 SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
.=..|....++++.+..-.-+.+.++|++.|| .|.-||
T Consensus 44 ~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGv-s~~t~Y 81 (229)
T 3bni_A 44 RLTRILDACADLLDEVGYDALSTRAVALRADV-PIGSVY 81 (229)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhcChhhccHHHHHHHHCC-CchhHH
Confidence 33456677888998866677999999999999 777776
No 315
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=21.14 E-value=70 Score=24.13 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=31.5
Q ss_pred cCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 11 EKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 11 ~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
+..-..+....++++.+..-.-+++..+|+..|| .|.-||
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agv-s~~t~Y 55 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGI-AKKTLY 55 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTC-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCC-CHHHHH
Confidence 3345556777888998766667999999999999 877777
No 316
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.00 E-value=1.7e+02 Score=21.77 Aligned_cols=54 Identities=15% Similarity=0.072 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 12 KSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 12 ~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+.|..-=...+.++.++.+.-++..+++.++++ ..+-+-=|+-.||.-|||.+.
T Consensus 33 ~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL-~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNL-PLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp CSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTC-CHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCC-CHHHHHHHHHHHHhCCCEEEe
Confidence 444443344567777776777999999999999 999999999999999999986
No 317
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=20.95 E-value=38 Score=26.18 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 13 SLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 13 SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
.=..+...+++++.+.+-.-+.+.++|+..|| .|.-||
T Consensus 13 tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y 50 (189)
T 3vp5_A 13 KRNRVYDACLNEFQTHSFHEAKIMHIVKALDI-PRGSFY 50 (189)
T ss_dssp HHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTC-CHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcccccHHHHHHHhCC-ChHHHH
Confidence 34456677889998877677999999999999 777666
No 318
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=20.92 E-value=2.2e+02 Score=19.85 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7686 86 LEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNI 122 (243)
Q Consensus 86 ~~~~~~~~Lk~El~~L~~~E~~LD~~I~~~~~~l~~l 122 (243)
+.+.++..|-.++...+....+||+.+..+..+=++|
T Consensus 9 eNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~EL 45 (64)
T 3t97_C 9 ENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKEL 45 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888889899888888998887776654444
No 319
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=20.86 E-value=74 Score=23.92 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=30.5
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 9 RFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 9 R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
|.+..=..+....++++.+. .-+.+.++|+..|| .|.-||
T Consensus 11 ~~~~~r~~Il~aA~~lf~~~--~~~t~~~Ia~~agv-s~~t~Y 50 (190)
T 2v57_A 11 ARERTRRAILDAAMLVLADH--PTAALGDIAAAAGV-GRSTVH 50 (190)
T ss_dssp --CHHHHHHHHHHHHHHTTC--TTCCHHHHHHHHTC-CHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHhCC-CHHHHH
Confidence 34445556777788999887 66899999999999 777666
No 320
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=20.62 E-value=71 Score=24.86 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=33.1
Q ss_pred eeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceE
Q psy7686 33 LHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIR 72 (243)
Q Consensus 33 idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~ 72 (243)
+...++|..||+ .+..+.=+.+-|+.-|+|+.. ++.|.
T Consensus 147 ~t~~~lA~~lg~-sr~tvsR~l~~L~~~g~I~~~-~~~i~ 184 (202)
T 2zcw_A 147 ATHDELAAAVGS-VRETVTKVIGELAREGYIRSG-YGKIQ 184 (202)
T ss_dssp CCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred CCHHHHHHHhCC-CHHHHHHHHHHHHHCCCEEeC-CCEEE
Confidence 667999999999 999999999999999999975 44444
No 321
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=20.62 E-value=2.5e+02 Score=20.41 Aligned_cols=83 Identities=16% Similarity=0.123 Sum_probs=0.0
Q ss_pred eeHHHHHhhhcccchhhhhhHHHhhhhccceeccccCceEEeccCCCCchhhhHHHHHhHhHH------HHHHHHH----
Q psy7686 33 LHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKALKNKNEEEYDLEQSKLIELR------DEISDMR---- 102 (243)
Q Consensus 33 idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~sKn~i~W~G~~~~~~~~~~~~~~~~~~Lk------~El~~L~---- 102 (243)
+.+.++|+.+|| ..+-|-=.-. .|+---.+...|.+++-....+ ..-..+..|+ +++..+-
T Consensus 3 ~~i~e~A~~~gv-s~~tLR~ye~--~Gll~p~~~~~~g~R~Y~~~dl------~~l~~I~~l~~~G~~l~~I~~~l~~~~ 73 (109)
T 1r8d_A 3 YQVKQVAEISGV-SIRTLHHYDN--IELLNPSALTDAGYRLYSDADL------ERLQQILFFKEIGFRLDEIKEMLDHPN 73 (109)
T ss_dssp BCHHHHHHHHSC-CHHHHHHHHH--TTSSCCSEECTTCCEEBCHHHH------HHHHHHHHHHHTTCCHHHHHHHHHCTT
T ss_pred ccHHHHHHHHCc-CHHHHHHHHH--CCCCCCCeECCCCCeeeCHHHH------HHHHHHHHHHHCCCCHHHHHHHHhCCC
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhh
Q psy7686 103 -NHEAVIDEHIRKCQQSLRNIQE 124 (243)
Q Consensus 103 -~~E~~LD~~I~~~~~~l~~l~e 124 (243)
.....|++++..+.+++..+..
T Consensus 74 ~~~~~~l~~~~~~l~~~i~~l~~ 96 (109)
T 1r8d_A 74 FDRKAALQSQKEILMKKKQRMDE 96 (109)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 322
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=20.49 E-value=62 Score=25.13 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=31.6
Q ss_pred eeHHHHHhhhcccchhhhhhHHHhhhhccceeccc
Q psy7686 33 LHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67 (243)
Q Consensus 33 idL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~s 67 (243)
+...++|..||+ .+..+.=+.+-|+.-|+|++..
T Consensus 140 ~t~~~lA~~lg~-sr~tvsR~l~~L~~~g~I~~~~ 173 (195)
T 3b02_A 140 VSHEEIADATAS-IRESVSKVLADLRREGLIATAY 173 (195)
T ss_dssp CCHHHHHHTTTS-CHHHHHHHHHHHHHHTSEEEET
T ss_pred CCHHHHHHHhCC-CHHHHHHHHHHHHHCCCEEecC
Confidence 677999999999 9999999999999999998874
No 323
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=20.39 E-value=88 Score=27.65 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCeeeHHHHHhhhcc-cchh---hhhhHHHhhhhccceecc
Q psy7686 21 FVSLLQQAPEGVLHLKYAAENLEV-KQKR---RIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 21 Fi~ll~~~~~g~idL~~aa~~L~v-~~KR---RiYDItNVLEgiglI~K~ 66 (243)
..+.|..+.++.+++.++|+++++ ...| .++-|..+|-++|++++.
T Consensus 45 ifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 45 LLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp HHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 555666655578999999999996 2334 799999999999999986
No 324
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=20.36 E-value=82 Score=27.11 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=40.2
Q ss_pred HHHHHHHHHhh---CCCCee-eHHHHHhhhcccchhhhhhHHHhhhhccceecc
Q psy7686 17 LTTKFVSLLQQ---APEGVL-HLKYAAENLEVKQKRRIYDITNVLEGIGLIEKN 66 (243)
Q Consensus 17 Lt~kFi~ll~~---~~~g~i-dL~~aa~~L~v~~KRRiYDItNVLEgiglI~K~ 66 (243)
+...+.+.+.. .|+..+ +-.++|+.++| .|--+-..++.|+.-|+|.+.
T Consensus 34 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~v-Sr~tvr~Al~~L~~~G~i~~~ 86 (272)
T 3eet_A 34 VAGDLRKKIVDGSLPPHTRLPSQARIREEYGV-SDTVALEARKVLMAEGLVEGR 86 (272)
T ss_dssp HHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEe
Confidence 44555555543 466677 89999999999 999999999999999999886
No 325
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.30 E-value=56 Score=24.77 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=32.0
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCeeeHHHHHhhhcccchhhhh
Q psy7686 9 RFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIY 51 (243)
Q Consensus 9 R~~~SL~~Lt~kFi~ll~~~~~g~idL~~aa~~L~v~~KRRiY 51 (243)
|.+..=..+....++++.+..-.-+++.++|++.|| .|.-||
T Consensus 13 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agv-s~~t~Y 54 (211)
T 3him_A 13 GTSKAAARIRAAAIEVFAAKGYGATTTREIAASLDM-SPGAVY 54 (211)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTC-CTTSST
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCC-CcChhh
Confidence 344555667778889998866667999999999999 666555
Done!