RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7686
(243 letters)
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix,
DNA-binding domain, cell cycle, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Length = 76
Score = 104 bits (260), Expect = 3e-29
Identities = 53/69 (76%), Positives = 60/69 (86%)
Query: 8 SRFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67
SR EKSLGLLTTKFVSLLQ+A +GVL LK AA+ L V+QKRRIYDITNVLEGIGLIEK +
Sbjct: 6 SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKS 65
Query: 68 KNIIRWKAL 76
KN I+WK +
Sbjct: 66 KNSIQWKGV 74
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle,
transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Length = 106
Score = 78.4 bits (193), Expect = 5e-19
Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 88 QSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRKQCYIPTDVI--LGMFPD 145
+L L ++ ++ E +D + C LR + E+ +++ Y+ + + +
Sbjct: 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAE 64
Query: 146 SSLMCLKAPYGTKLHVPSISTDENKIKLHVKSSHPEEPVNILLLDTE 192
+M +KAP T+L ++ +KS P+++ L E
Sbjct: 65 QMVMVIKAPPETQLQAV---DSSENFQISLKSKQ--GPIDVFLCPEE 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 5e-06
Identities = 30/244 (12%), Positives = 81/244 (33%), Gaps = 36/244 (14%)
Query: 15 GLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNII-RW 73
+L+ + + + + + V L KQ+ + ++ N K ++
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE-----EVLRINYKFLMSPI 98
Query: 74 KALKNKNEEEYDLEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRKQCY 133
K + + + + L ++ + + K +Q+L ++ +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK------N 152
Query: 134 IPTDVILGM--FPDSSL---MCLKAPYGTK-------LHVPSISTDENKIKLHVKSSHPE 181
+ +I G+ + + +CL K L++ + ++ E +++ K +
Sbjct: 153 V---LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 182 EPVNILLLDTEPKKEKPQTRGRKRKWSEDRRLIVVPNPPSRKDFLFKLDD--DEGISHMF 239
+P D + + RRL+ ++ L L + + + F
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAEL----RRLLKS---KPYENCLLVLLNVQNAKAWNAF 262
Query: 240 DLIC 243
+L C
Sbjct: 263 NLSC 266
Score = 42.1 bits (98), Expect = 1e-04
Identities = 46/258 (17%), Positives = 86/258 (33%), Gaps = 61/258 (23%)
Query: 29 PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIG------L---------IEKNNKNIIRW 73
+ L L+ A L + + + +++G+ + ++ I W
Sbjct: 134 LQPYLKLRQALLEL--RPAKNV-----LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 74 KALKNKNEEEYDLE--QSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRKQ 131
LKN N E LE Q L ++ + +H + I I Q LR + + + +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYEN 245
Query: 132 CY-IPTDV----ILGMF----------PDSSLM-CLKAPYGTKL----HVPSISTDENK- 170
C + +V F + L A T + H +++ DE K
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 171 --IK-LHVKSSH-PEEPVNI--LLLDT--EPKKEKPQTRGRKRKWSEDRRLIVVPNPPSR 222
+K L + P E + L E ++ T + + D+ ++
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII------ 359
Query: 223 KDFLFKLDDDEGISHMFD 240
+ L L+ E MFD
Sbjct: 360 ESSLNVLEPAE-YRKMFD 376
Score = 37.1 bits (85), Expect = 0.005
Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 65/230 (28%)
Query: 29 PEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNII-----RWKALKNKNEEE 83
P +L L + + N L L+EK K + LK K E E
Sbjct: 388 PTILLSLIWFDVIKSDVM-----VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 84 YDLEQSKLIELRDEISDMRNHEAVIDE-----------HIRKCQQSLRNIQEEEVNRKQC 132
Y L + +++ + + + + H++ + + + R
Sbjct: 443 YALHR-SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP----ERMTLFRM-- 495
Query: 133 YIPTDVILGMFPDSSLMCLKAPYGTKLHVPSISTDENKIKLHVKSSHPEEPVNILLLDTE 192
+F D + E KI+ + + + L
Sbjct: 496 ---------VFLDFRFL------------------EQKIRHDSTAWNASGSILNTLQQL- 527
Query: 193 PKKEKPQTRGRKRKWSEDRRLIVVPNPPSRKDFLFKLDDDEGISHMFDLI 242
K KP K+ +R + + DFL K++++ S DL+
Sbjct: 528 -KFYKPYICDNDPKY--ERLVNAI------LDFLPKIEENLICSKYTDLL 568
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix,
DNA-binding domain, cell cycle, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Length = 95
Score = 38.5 bits (89), Expect = 2e-04
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 24 LLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKALKNKNEE 82
L+ + HL + + +RR+YD NVL + +I K K I+W L + +
Sbjct: 38 LVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKE-IKWIGLPTNSAQ 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 32.5 bits (73), Expect = 0.095
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 76 LKNKNEEEYDLEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRK 130
L+ K E+ +RD++ DM+ E ID IR C+ S E +V+ +
Sbjct: 125 LRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLE 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.27
Identities = 37/247 (14%), Positives = 68/247 (27%), Gaps = 99/247 (40%)
Query: 1 MCTDP---ANSRFEKSLGLLTTKFVSLLQQAPEGVLHLK-----------YAAENLEVKQ 46
M + + EK + S ++ +G+L AA E +
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA--FEDLK 1748
Query: 47 KRRIYDITNVLEG--IGLIEKNNKNIIRWKALKNKNEEEY----------DLEQS-KLIE 93
+ + G +G EY +E +++
Sbjct: 1749 SKGLIPADATFAGHSLG---------------------EYAALASLADVMSIESLVEVVF 1787
Query: 94 LR----------DEISDMRNHE--AVIDEHIRK--CQQSLRNIQEE---------E-VN- 128
R DE+ N+ A+ + Q++L+ + E E VN
Sbjct: 1788 YRGMTMQVAVPRDELG-RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 129 --RKQCYIPTDVILGMFPDSSLMCLKAPYGTKLHVPSISTDENKIK----LHVKSSHPEE 182
Q Y V G L+A L + + K++ + ++ S E
Sbjct: 1847 NVENQQY----VAAGD--------LRA-----LDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Query: 183 PVNILLL 189
V L
Sbjct: 1890 EVEGHLF 1896
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 31.0 bits (69), Expect = 0.35
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 76 LKNKNEEEYDLEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRK 130
LK K E+ Q +R ++ DM+ E ID IR C+ S EV+ K
Sbjct: 122 LKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLK 176
>3qph_A TRMB, A global transcription regulator; transcriptional regulator;
HET: SUC; 2.99A {Pyrococcus furiosus}
Length = 342
Score = 29.7 bits (66), Expect = 0.93
Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 10/131 (7%)
Query: 21 FVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKA----- 75
+ +LL P + + + R+YD + L+ G + + + A
Sbjct: 24 YWTLLVYGPSTAKEI---STKSGIPY-NRVYDTISSLKLRGFVTEIEGTPKVYAAYSPRI 79
Query: 76 -LKNKNEEEYDLEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRKQCYI 134
+E D+ + IEL + + + + + R N
Sbjct: 80 AFFRFKKELEDIMKKLEIELNNVKKEEQRPAIWRSRSFDEAIEMFRESLYSAKNEVIVVT 139
Query: 135 PTDVILGMFPD 145
P++ + D
Sbjct: 140 PSEFFETIRED 150
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.1
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 163 SISTDENKIKLHVKSSHPEEPVN 185
++ + +KL+ S P +
Sbjct: 21 ALKKLQASLKLYADDSAPALAIK 43
Score = 27.6 bits (60), Expect = 2.7
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 21/45 (46%)
Query: 110 EHIRKCQQSLRNIQEEEVNRKQCYIPTDVILGMFPDSS-LMCLKA 153
+ ++K Q SL+ Y DS+ + +KA
Sbjct: 20 QALKKLQASLK-----------LYA---------DDSAPALAIKA 44
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.3
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 24/70 (34%)
Query: 69 NIIRWKALKNKNEEEYDLEQSKLIELRDEISDMRNHE-------------AVIDEHIRKC 115
+I +W+ EQ K ++ D S + E E + K
Sbjct: 86 SIRKWRE-----------EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 116 QQSLRNIQEE 125
+ + R +
Sbjct: 135 KINNRIADKA 144
Score = 27.4 bits (60), Expect = 3.1
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 18/82 (21%)
Query: 25 LQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKALKNKNEEEY 84
L Q PE ++ E +Q++R+ ++ + W+ K+ EE+
Sbjct: 80 LTQEPE---SIRKWRE----EQRKRLQELD---------AASKVMEQEWREKAKKDLEEW 123
Query: 85 DLEQSKLIELRDEISDMRNHEA 106
+ QS+ +E + R +
Sbjct: 124 NQRQSEQVEKN--KINNRIADK 143
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 29.3 bits (66), Expect = 1.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 161 VPSISTDENKIKLHVKSSHPEEPVNILLLDTEP 193
I+T N++ L VK+ HP+ + + +L TEP
Sbjct: 610 PSQINTLNNELTLIVKAFHPDSNITLEVLSTEP 642
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 28.8 bits (65), Expect = 1.8
Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 89 SKLIELRDEISDMRNHEAVIDEHIRKCQQSL----RNIQEEEVNRKQCY 133
SK+ L+++I+ ++ A + E I+ + + + +EE R+ +
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLH 51
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 28.6 bits (64), Expect = 1.9
Identities = 10/91 (10%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 42 LEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKALKNKNEEEYDLEQSKLIELRDEISDM 101
++ Q + D++ + L + + L + +++ + +S + S+
Sbjct: 416 VDSAQHLVVRDVSLQGSTLALPGSSAEG------LPGEIKQQLEELESDWRKQHALFSEQ 469
Query: 102 RNHEAVIDEHIRKCQQSLRNIQEEEVNRKQC 132
+ + + + + + SL+++ + +QC
Sbjct: 470 QKCLFIPGDWLGRIEASLQDVGAQIRQAQQC 500
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 28.6 bits (64), Expect = 2.4
Identities = 16/120 (13%), Positives = 44/120 (36%), Gaps = 4/120 (3%)
Query: 8 SRFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDIT--NVLEGIGLIEK 65
+ E L L K L ++ L+ E ++ R+ LE I L E
Sbjct: 874 QKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI-LHEM 932
Query: 66 NNKNIIRWKALKNKNEEEYDLEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEE 125
+ + + E+ ++Q ++++L +++ + + ++ ++++
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQQ-QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A*
1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A*
2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A*
1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Length = 87
Score = 26.6 bits (58), Expect = 2.8
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 72 RWKALKNKNEEEYDLEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRK 130
R + LK K E+ Q +R ++ DM+ E ID IR C+ S EV+ K
Sbjct: 8 RIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLK 66
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 28.0 bits (62), Expect = 3.0
Identities = 36/215 (16%), Positives = 63/215 (29%), Gaps = 25/215 (11%)
Query: 32 VLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKALKNKNEEEYDLEQSKL 91
VL L E K + I ++ E + K E +L
Sbjct: 36 VLLLPLRPELEPYKHR--IAEV--------YAEVLGVKTV---LRKGHIHGETRKPDYEL 82
Query: 92 IELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRKQCYIPTDVILGMFPDSSLMCL 151
+ D ++ + + K S N +E V + P ++++ MF + L
Sbjct: 83 LYGSDTVTVHVENGIKYKLDVAKIMFSPAN-VKERVRMAKVAKPDELVVDMFAGIGHLSL 141
Query: 152 KAPYGTKLHVPSISTDENKIKLHVKSSHPEEPVNILLLDTEPKKEKPQTRGRKRKWSEDR 211
K V +I D K V+ NI L E + R
Sbjct: 142 PIAVYGKAKVIAIEKDPYTFKFLVE--------NIHLNKVEDRMSAYNMDNRDFPGENIA 193
Query: 212 RLIVVPNPPSRKDFL---FKLDDDEGISHMFDLIC 243
I++ +F+ + D I H + +
Sbjct: 194 DRILMGYVVRTHEFIPKALSIAKDGAIIHYHNTVP 228
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 27.9 bits (63), Expect = 3.0
Identities = 16/112 (14%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 33 LHLKYAAENLE-VKQK--RRIYDITNVLEGIGLIEKNNKNII----RWKALKN------- 78
+ + E + VK++ R ++ ++++ + ++K + II ++ +N
Sbjct: 2 IDINLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIG 61
Query: 79 ---KNEEEYDLEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEV 127
+ ++ Q+++ EL++EI + ++E ++ + N+ V
Sbjct: 62 KLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSV 113
>4de9_A Putative transcriptional regulator YWTF; possible role in WALL
techoic acid synthesis, membrane prote; HET: VTP; 1.79A
{Bacillus subtilis} PDB: 3mej_A*
Length = 286
Score = 27.7 bits (62), Expect = 3.3
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 163 SISTDENKIKLHVKSSHPEEPVNILLL--DTEPKKEKPQTRGR 203
S++ E +K + ++ ++LLL D K + + R
Sbjct: 9 SLARGEQSVKRIKEFDPGKDSFSVLLLGIDAREKNGETVDQAR 51
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Length = 119
Score = 26.7 bits (58), Expect = 3.8
Identities = 9/56 (16%), Positives = 24/56 (42%)
Query: 76 LKNKNEEEYDLEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRKQ 131
L+ + + ++ ++S + E ID +R C+ S E +++++
Sbjct: 34 LQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRACKGSCARYLEYRLDKEK 89
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 26.8 bits (60), Expect = 6.6
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 64 EKNN--KNIIRWKALKNKNEEEYDLEQSKLI----ELRDEISDMRNHEAVIDEHIRKCQQ 117
EK + + ++ ++ + D + L E+R +++ + EA ++E
Sbjct: 92 EKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151
Query: 118 SLRNIQEEEV 127
L N +V
Sbjct: 152 RLPNQTHPDV 161
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.0 bits (60), Expect = 7.6
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
Query: 35 LKYAAENLEVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKALKNK----------NEEEY 84
L EN ++ +R+I + + L+EK N I + K +EEE
Sbjct: 922 LHIGLENKIMQLQRKIDEQNKEYKS--LLEKMNNLEITYSTETEKLRSDVERLRMSEEEA 979
Query: 85 DLEQSKLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEE 125
++++ L++EI+ +R + ++ + E
Sbjct: 980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.390
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,649,773
Number of extensions: 212002
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's gapped: 496
Number of HSP's successfully gapped: 42
Length of query: 243
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 152
Effective length of database: 4,160,982
Effective search space: 632469264
Effective search space used: 632469264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)