RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7686
         (243 letters)



>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score =  105 bits (265), Expect = 2e-30
 Identities = 53/67 (79%), Positives = 59/67 (88%)

Query: 8  SRFEKSLGLLTTKFVSLLQQAPEGVLHLKYAAENLEVKQKRRIYDITNVLEGIGLIEKNN 67
          SR EKSLGLLTTKFVSLLQ+A +GVL LK AA+ L V+QKRRIYDITNVLEGIGLIEK +
Sbjct: 1  SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKS 60

Query: 68 KNIIRWK 74
          KN I+WK
Sbjct: 61 KNSIQWK 67


>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 101

 Score = 74.0 bits (182), Expect = 9e-18
 Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 90  KLIELRDEISDMRNHEAVIDEHIRKCQQSLRNIQEEEVNRKQCYIPTDVI--LGMFPDSS 147
           +L  L  ++  ++  E  +D  +  C   LR + E+  +++  Y+    +  +    +  
Sbjct: 2   RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQM 61

Query: 148 LMCLKAPYGTKLHVPSISTDENKIKLHVKSSHPEEPVNILLLDTE 192
           +M +KAP  T+L            ++ +KS     P+++ L   E
Sbjct: 62  VMVIKAPPETQLQAV---DSSENFQISLKSKQ--GPIDVFLCPEE 101


>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 43 EVKQKRRIYDITNVLEGIGLIEKNNKNIIRWKAL 76
          +   +RR+YD  NVL  + +I K  K  I+W  L
Sbjct: 49 QKNIRRRVYDALNVLMAMNIISKEKKE-IKWIGL 81


>d1vzia1 b.1.13.1 (A:38-125) Desulfoferrodoxin C-terminal domain
           {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId:
           887]}
          Length = 88

 Score = 25.1 bits (55), Expect = 3.6
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 160 HVPSISTDENKIKLHVKS-SHPEEP 183
           HVP I   +   K+ V + +HP E 
Sbjct: 11  HVPVIEKIDGGYKVKVGAVAHPMEE 35


>d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC
          component FruA, middle domain {Bacillus subtilis
          [TaxId: 1423]}
          Length = 103

 Score = 25.4 bits (56), Expect = 3.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 29 PEGVLHLKYAAENLEVKQKRRIYDIT 54
          P G+ H   AA+ L+ K K    +I 
Sbjct: 9  PTGIAHTFMAADALKEKAKELGVEIK 34


>d2r48a1 c.44.2.2 (A:2-104) Mannose-specific enzyme IIBCA
          component ManP, N-terminal domain {Bacillus subtilis
          [TaxId: 1423]}
          Length = 103

 Score = 25.0 bits (55), Expect = 3.8
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 28 APEGVLHLKYAAENLEVKQKRRIYDIT 54
           P G+ H   AAENL+    R    I 
Sbjct: 8  CPNGIAHTYMAAENLQKAADRLGVSIK 34


>d2choa3 d.92.2.3 (A:5-126) Glucosaminidase GH84, N-terminal
          domain {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 122

 Score = 24.3 bits (52), Expect = 9.7
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 60 IGLIEKNNKNIIRWKALKNKNEEEYDLE 87
          I + EK +K++ ++      ++E Y L 
Sbjct: 53 ISIGEKGDKSVRKYSRQIPDHKEGYYLS 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 904,081
Number of extensions: 42770
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 23
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.0 bits)