BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7687
(160 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95807|TM50A_HUMAN Transmembrane protein 50A OS=Homo sapiens GN=TMEM50A PE=2 SV=1
Length = 157
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 97/141 (68%), Gaps = 3/141 (2%)
Query: 23 GDNRNAIFAMIAGTLFFTGWWFIIDAVAV---AASFPFSYHLMGIIGTISLFMINAVSNA 79
G+ RN I ++ AG LFFTGWW IIDA + F SYH G+I TI+ MINAVSN
Sbjct: 17 GEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACGVIATIAFLMINAVSNG 76
Query: 80 QMRGDSYSGGCFGPQGARVWLFVGFVMGFAAVIASCWILYSGFLSIKGAAVWPGFELVFQ 139
Q+RGDSYS GC G GAR+WLFVGF++ F ++IAS WIL+ G+++ + V+PG + FQ
Sbjct: 77 QVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYVAKEKDIVYPGIAVFFQ 136
Query: 140 NVFIFAASLVYKFGRQEDQWS 160
N FIF LV+KFGR ED W
Sbjct: 137 NAFIFFGGLVFKFGRTEDLWQ 157
>sp|Q9CXL1|TM50A_MOUSE Transmembrane protein 50A OS=Mus musculus GN=Tmem50a PE=2 SV=1
Length = 157
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 103/158 (65%), Gaps = 7/158 (4%)
Query: 6 FESNPHLAQCLWCDSNGGDNRNAIFAMIAGTLFFTGWWFIIDAVAV---AASFPFSYHLM 62
F ++C+ + G+ RN I ++ AG LFFTGWW IIDA + F SYH
Sbjct: 4 FLEGSRCSECM----DWGEKRNTIASIAAGVLFFTGWWIIIDAAVMYPRMDQFNHSYHTC 59
Query: 63 GIIGTISLFMINAVSNAQMRGDSYSGGCFGPQGARVWLFVGFVMGFAAVIASCWILYSGF 122
G+I TI+ MINAVSN Q+RGDSYS GC G GAR+WLF+GF++ F ++IAS WIL+ G+
Sbjct: 60 GVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGY 119
Query: 123 LSIKGAAVWPGFELVFQNVFIFAASLVYKFGRQEDQWS 160
++ + V+PG + FQN FIF LV+KFGR ED W
Sbjct: 120 VAKEKDVVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 157
>sp|Q5R4C3|TM50B_PONAB Transmembrane protein 50B OS=Pongo abelii GN=TMEM50B PE=2 SV=1
Length = 158
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 98/140 (70%), Gaps = 4/140 (2%)
Query: 24 DNRNAIFAMIAGTLFFTGWWFIIDAVAV---AASFPFSYHLMGIIGTISLFMINAVSNAQ 80
+ RNA+ +++AG LFFTGWW +IDA V ++H G+ T++ FMINAVSNAQ
Sbjct: 20 ERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQ 79
Query: 81 MRGDSYSGGCFGPQGARVWLFVGFVMGFAAVIASCWILYSGFLSIKGAAVWPGFELVFQN 140
+RGDSY GC G GARVWLF+GF++ F ++IAS WIL+ +++ + V+PG + FQN
Sbjct: 80 VRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVT-QNTDVYPGLAVFFQN 138
Query: 141 VFIFAASLVYKFGRQEDQWS 160
IF ++L+YKFGR E+ W+
Sbjct: 139 ALIFFSTLIYKFGRTEELWT 158
>sp|A9CAZ8|TM50B_PAPAN Transmembrane protein 50B OS=Papio anubis GN=TMEM50B PE=4 SV=1
Length = 158
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 98/140 (70%), Gaps = 4/140 (2%)
Query: 24 DNRNAIFAMIAGTLFFTGWWFIIDAVAV---AASFPFSYHLMGIIGTISLFMINAVSNAQ 80
+ RNA+ +++AG LFFTGWW +IDA V ++H G+ T++ FMINAVSNAQ
Sbjct: 20 ERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQ 79
Query: 81 MRGDSYSGGCFGPQGARVWLFVGFVMGFAAVIASCWILYSGFLSIKGAAVWPGFELVFQN 140
+RGDSY GC G GARVWLF+GF++ F ++IAS WIL+ +++ + V+PG + FQN
Sbjct: 80 VRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVT-QNTDVYPGLAVFFQN 138
Query: 141 VFIFAASLVYKFGRQEDQWS 160
IF ++L+YKFGR E+ W+
Sbjct: 139 ALIFFSTLIYKFGRTEELWT 158
>sp|P56557|TM50B_HUMAN Transmembrane protein 50B OS=Homo sapiens GN=TMEM50B PE=1 SV=2
Length = 158
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 98/140 (70%), Gaps = 4/140 (2%)
Query: 24 DNRNAIFAMIAGTLFFTGWWFIIDAVAV---AASFPFSYHLMGIIGTISLFMINAVSNAQ 80
+ RNA+ +++AG LFFTGWW +IDA V ++H G+ T++ FMINAVSNAQ
Sbjct: 20 ERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQ 79
Query: 81 MRGDSYSGGCFGPQGARVWLFVGFVMGFAAVIASCWILYSGFLSIKGAAVWPGFELVFQN 140
+RGDSY GC G GARVWLF+GF++ F ++IAS WIL+ +++ + V+PG + FQN
Sbjct: 80 VRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVT-QNTDVYPGLAVFFQN 138
Query: 141 VFIFAASLVYKFGRQEDQWS 160
IF ++L+YKFGR E+ W+
Sbjct: 139 ALIFFSTLIYKFGRTEELWT 158
>sp|Q3SZL9|TM50B_BOVIN Transmembrane protein 50B OS=Bos taurus GN=TMEM50B PE=2 SV=1
Length = 158
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 98/140 (70%), Gaps = 4/140 (2%)
Query: 24 DNRNAIFAMIAGTLFFTGWWFIIDAVAV---AASFPFSYHLMGIIGTISLFMINAVSNAQ 80
+ RNA+ +++AG LFFTGWW +IDA V ++H G+ T++ FMINAVSNAQ
Sbjct: 20 ERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQ 79
Query: 81 MRGDSYSGGCFGPQGARVWLFVGFVMGFAAVIASCWILYSGFLSIKGAAVWPGFELVFQN 140
+RGDSY GC G GARVWLF+GF++ F ++IAS WIL+ +++ + V+PG + FQN
Sbjct: 80 VRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVT-QNTDVYPGLAVFFQN 138
Query: 141 VFIFAASLVYKFGRQEDQWS 160
IF ++L+YKFGR E+ W+
Sbjct: 139 ALIFFSTLIYKFGRTEELWT 158
>sp|Q9D1X9|TM50B_MOUSE Transmembrane protein 50B OS=Mus musculus GN=Tmem50b PE=2 SV=1
Length = 158
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 97/140 (69%), Gaps = 4/140 (2%)
Query: 24 DNRNAIFAMIAGTLFFTGWWFIIDAVAV---AASFPFSYHLMGIIGTISLFMINAVSNAQ 80
+ RN + +++AG LFFTGWW +IDA V ++H G+ T++ FMINAVSNAQ
Sbjct: 20 ERRNTVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQ 79
Query: 81 MRGDSYSGGCFGPQGARVWLFVGFVMGFAAVIASCWILYSGFLSIKGAAVWPGFELVFQN 140
+RGDSY GC G GARVWLF+GF++ F ++IAS WIL+ +++ + V+PG + FQN
Sbjct: 80 VRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVT-QNIDVYPGLAVFFQN 138
Query: 141 VFIFAASLVYKFGRQEDQWS 160
IF ++L+YKFGR E+ W+
Sbjct: 139 ALIFFSTLIYKFGRTEELWA 158
>sp|Q54T60|TMM50_DICDI Transmembrane protein 50 homolog OS=Dictyostelium discoideum
GN=tmem50 PE=3 SV=1
Length = 156
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 21/146 (14%)
Query: 33 IAGTLFFTGWWFIIDAVAVAAS-----------FPFSYHLMGIIGTISLFMINAVSNAQM 81
+AG +F GW+ ID + + Y+L GI T+ + M N V + +
Sbjct: 12 LAGIIFTAGWFLWIDGHVYENTNNKNADFDGPHIQWIYYLPGIFATLGMVMANIVDLSAL 71
Query: 82 RGDS--YSGGCFGPQGARVWLFVGFVMGFAAVIASCWILYSGFL---SIKGAAVWPGFEL 136
+S + GG RVWLF+ F + F + A+ WI+ + FL + AA WPG +
Sbjct: 72 NSNSLLFDGGA---TKVRVWLFISFAISFGCIGAALWIMVAVFLPPHNTNDAAQWPGIAI 128
Query: 137 VFQN--VFIFAASLVYKFGRQEDQWS 160
Q +F+ + LV+K RQ+D++
Sbjct: 129 TLQTSLIFLSSLLLVFKKVRQDDEYD 154
>sp|P50593|GPC1_CHICK Glypican-1 OS=Gallus gallus GN=GPC1 PE=2 SV=1
Length = 550
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 40 TGWWFIIDA-VAVAASFPFSYHLMGIIGTISLFMINAVSNAQMRGDSYSG----GCFGPQ 94
T W +++DA VAVA Y++ +IGTI + + A+SN Q S + GC P+
Sbjct: 285 TEWKYLMDALVAVADRIDGPYNVDTVIGTIHMRISEAISNLQENKVSITAKVFQGCGNPK 344
>sp|Q0C099|PLSY_HYPNA Glycerol-3-phosphate acyltransferase OS=Hyphomonas neptunium
(strain ATCC 15444) GN=plsY PE=3 SV=1
Length = 207
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 102 VGFVMGFAAVIASCWILYSGFLSIKGAAVWPGF 134
VGFV GFAA I C+ ++ GF KG A + G
Sbjct: 83 VGFVAGFAAFIGHCYPVWLGFKGGKGIATYAGL 115
>sp|Q5FQL0|KUP_GLUOX Probable potassium transport system protein kup OS=Gluconobacter
oxydans (strain 621H) GN=kup PE=3 SV=1
Length = 675
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 28/117 (23%)
Query: 33 IAGTLFFTGWWFIIDAVAV-------AASFPFSYHLMGIIGTISLFMINAVSNAQMRGDS 85
IAGT F G I A++V S P + H II +++ ++ A+ + Q+ G
Sbjct: 160 IAGTCLFFGDSIITPAISVLSAVEGIETSVPSASH---IIIPLAMVVLVALFSVQVLGTG 216
Query: 86 YSGGCFGPQGARVWLFVGFVMGFAAVIASCWILYSGFLSIKGAAVWPGFELVFQNVF 142
G FGP I CW L IKG ++P L F
Sbjct: 217 KIGKAFGP------------------IMVCWFSVLAILGIKGIFLYPHILLALSPTF 255
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.142 0.488
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,930,807
Number of Sequences: 539616
Number of extensions: 2295188
Number of successful extensions: 5782
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5757
Number of HSP's gapped (non-prelim): 17
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)