RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7687
         (160 letters)



>gnl|CDD|218522 pfam05255, UPF0220, Uncharacterized protein family (UPF0220).  This
           family of proteins is functionally uncharacterized.
          Length = 165

 Score =  130 bits (328), Expect = 3e-39
 Identities = 56/146 (38%), Positives = 81/146 (55%), Gaps = 11/146 (7%)

Query: 26  RNAIFAMIAGTLFFTGWWFIIDAVAVAAS-------FPFSYHLMGIIGTISLFMINAVSN 78
           R ++   +AG LF  GWW +IDA   +           F   + GI  T+ + M+N++  
Sbjct: 20  RRSVGVYLAGALFALGWWILIDAAVYSKKNNASDVHITFVDWIPGICSTLGMLMVNSIEK 79

Query: 79  AQMRGDSYS-GGCFGPQGARVWLFVGFVMGFAAVIASCWILYSGFLSIK--GAAVWPGFE 135
           +++RGDS S GG  G  GARVWLF+GF + F  +IAS W+L   ++        +WPG  
Sbjct: 80  SRLRGDSLSSGGSSGAWGARVWLFLGFALLFGGLIASIWVLILKYVVKDYEKPTLWPGVA 139

Query: 136 LVFQNVFIFAASLVYKFGR-QEDQWS 160
            V QNV I  +SLV  FG+  ED++S
Sbjct: 140 NVLQNVLIMLSSLVLWFGQNTEDEYS 165


>gnl|CDD|181074 PRK07668, PRK07668, hypothetical protein; Validated.
          Length = 254

 Score = 33.4 bits (77), Expect = 0.028
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 23  GDNRNAIFAMIAGTLFFTGWWFIIDAVAVAASFPFSYHLMGIIG-TISLFMINAVSNAQM 81
            +N   I  +I G L    +W I + +    + P +Y L+ +IG  ISL +        +
Sbjct: 72  KENIKLILFIIIGIL---SFWIIANILFGNPNHPLTYSLIQLIGYPISLILTIIGLIFLL 128

Query: 82  RGDSY 86
           R  S+
Sbjct: 129 RMASF 133


>gnl|CDD|177440 PHA02621, PHA02621, agnoprotein; Provisional.
          Length = 68

 Score = 27.6 bits (61), Expect = 0.82
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 124 SIKGAAVWPGFELVFQNVFIFAASLVYKFGRQED 157
           S+K    W G +   Q +FIF   L+  F R ED
Sbjct: 11  SVKVGKTWTGTKKRAQRIFIFILELLLDFCRGED 44


>gnl|CDD|237166 PRK12666, PRK12666, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 528

 Score = 27.5 bits (62), Expect = 3.5
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 21/83 (25%)

Query: 33  IAGTLFFTGWWFIIDAVAVAASFPFSYHLMGIIGTISLFMINAVSNAQMRGDSYSGGCFG 92
           I  T+   G  F I A+A+A   P S    G +G     ++ A+ N              
Sbjct: 386 IPATMALLGLLFFICALALAGLPPLS----GFLG--KFALLQALLNP------------- 426

Query: 93  PQGARVWLFVGFVM--GFAAVIA 113
           P     W     V+  G AA+IA
Sbjct: 427 PGAGAAWWLWALVLLSGLAALIA 449


>gnl|CDD|234557 TIGR04346, DotA_TraY, conjugal transfer/type IV secretion protein
           DotA/TraY.  Members of this protein family include
           transfer protein TraY of IncI1 plasmid R64 and DotA
           (defect in organelle trafficking A) of Legionella
           pneumophila.
          Length = 652

 Score = 27.0 bits (60), Expect = 5.9
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 29  IFAMIAG-TLFFTGWWFIIDAVAVAASFPFSYHLMGIIGTISLFMINAV 76
           +    A   L       +    A+A +   S  + GI+G I++ +I AV
Sbjct: 579 VIGFFAAILLSDVIGTLLNKLFAIALANVQSGSVTGILGFIAMLVIYAV 627


>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183).  This
           family consists of several eukaryotic proteins of around
           360 residues in length. The function of this family is
           unknown.
          Length = 317

 Score = 26.2 bits (58), Expect = 8.5
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 7/42 (16%)

Query: 83  GDSYSGGCFGPQGARVWLFVGFVMGFAAVIASCWILYSGFLS 124
              YSG   G  G+   LF  F +   A     +ILY  FLS
Sbjct: 145 FSGYSGWSSGDGGS--GLFTVFFLAVLA-----FILYKFFLS 179


>gnl|CDD|224765 COG1852, COG1852, Uncharacterized conserved protein [Function
           unknown].
          Length = 209

 Score = 25.8 bits (57), Expect = 9.4
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 104 FVMGFAAVIASCWILYSGFLSIKGAAVWPGFELVFQNVFIFAASLV-YKFGRQED 157
           F+    A I S   L    +S+K   ++PGF+L   ++F      + +K    ED
Sbjct: 10  FLSMLLAFILSGLALLISRISLKKKLIFPGFDLFTLDLFYAPIKTILFKLSEDED 64


>gnl|CDD|233281 TIGR01129, secD, protein-export membrane protein SecD.  Members of
           this family are highly variable in length immediately
           after the well-conserved motif LGLGLXGG at the
           amino-terminal end of this model. Archaeal homologs are
           not included in the seed and score between the trusted
           and noise cutoffs. SecD from Mycobacterium tuberculosis
           has a long Pro-rich insert [Protein fate, Protein and
           peptide secretion and trafficking].
          Length = 397

 Score = 26.1 bits (58), Expect = 9.6
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 45  IIDAVAVAASFPFSYHLMGIIGTISLFMINAV 76
           +I  V V       Y L G+I  I+L  IN V
Sbjct: 255 LIGLVLVLVFMILYYRLFGLIAAIALV-INIV 285


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.330    0.142    0.488 

Gapped
Lambda     K      H
   0.267   0.0765    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,396,893
Number of extensions: 788086
Number of successful extensions: 1580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1546
Number of HSP's successfully gapped: 176
Length of query: 160
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 71
Effective length of database: 6,990,096
Effective search space: 496296816
Effective search space used: 496296816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (24.9 bits)