RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7687
         (160 letters)



>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway,
           EPSP synthase, glyphosate, PEP, transferase; HET: GPJ
           S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2
           PDB: 1rf5_A 1rf4_A*
          Length = 427

 Score = 30.6 bits (70), Expect = 0.17
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 23  GDNRNAIFAMIAGTLFFTGWWFIIDAVAVAASFP-FSYHLMGIIG 66
           GD+R  +   IA  L   G   +  A A+  S+P F   L  +I 
Sbjct: 382 GDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESLIH 426


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 1.4
 Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 35/104 (33%)

Query: 53  ASFPFSYHLMGIIGTISL--FMINA----VSNAQMRGDSYSG--GCFGPQGARVWLFVGF 104
            S P S     +IG I L  +++ A     +  ++R     G  G             G 
Sbjct: 232 LSIPIS---CPLIGVIQLAHYVVTAKLLGFTPGELR-SYLKGATGHSQ----------GL 277

Query: 105 VMGFAAVIASC--WILYSGFLSIKGAAV----WPGFELVFQNVF 142
           V   A  IA    W     F      A+    + G        +
Sbjct: 278 VT--AVAIAETDSW---ESFFVSVRKAITVLFFIGVR--CYEAY 314



 Score = 26.9 bits (59), Expect = 3.7
 Identities = 16/115 (13%), Positives = 28/115 (24%), Gaps = 40/115 (34%)

Query: 2    PLFDFESNPHLAQCLWCDSNGGDNR--N---AIFAM-IAGTLFFTGW--WFIIDA----- 48
             +F  E N H     +    G  +       A+  M  A    F       +I A     
Sbjct: 1705 KIFK-EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA---AFEDLKSKGLIPADATFA 1760

Query: 49   ----------VAVAASFPFSYHLMGIIGTISL------FMINAVSNAQMRGDSYS 87
                       ++A               + +       M  AV   ++   +Y 
Sbjct: 1761 GHSLGEYAALASLADVMSIE-------SLVEVVFYRGMTMQVAVPRDELGRSNYG 1808


>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
           membrane, transport protein; HET: ACH MES; 2.91A
           {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
           2vl0_A 2yks_A
          Length = 322

 Score = 26.5 bits (59), Expect = 4.1
 Identities = 8/56 (14%), Positives = 20/56 (35%)

Query: 98  VWLFVGFVMGFAAVIASCWILYSGFLSIKGAAVWPGFELVFQNVFIFAASLVYKFG 153
             +  G+   FAA++   +  +     ++   +     L F   F+    ++   G
Sbjct: 264 QMIIAGYGSIFAAILLIIFAHHRQANGVEDDLLIQRCRLAFPLGFLAIGCVLVIRG 319


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.142    0.488 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,534,962
Number of extensions: 142212
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 28
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.4 bits)