BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7691
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 60/84 (71%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
AR + EVE +R+ KEITV+G+N P P E FP V+ + Q F EPTAIQAQGW
Sbjct: 15 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 74
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 75 PVALSGLDMVGVAQTGSGKTLSYL 98
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain
I In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain
I In Complex With Adp
Length = 242
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 57/78 (73%)
Query: 18 EVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG 77
EVE +R+ KEITV+G+N P P E FP V+ + Q F EPTAIQAQGWP+ALSG
Sbjct: 7 EVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSG 66
Query: 78 RDMVGIAQTGSGKTLAVI 95
DMVG+AQTGSGKTL+ +
Sbjct: 67 LDMVGVAQTGSGKTLSYL 84
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD P+ E+Y+HRIGRTGR + G A +FF N K+L+ +L EA Q +P L+
Sbjct: 118 VINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLE 177
Query: 154 DLA 156
++A
Sbjct: 178 NMA 180
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD P+ E+Y+HRIGRTGR + G A +FF N K+L+ +L EA Q +P L+
Sbjct: 348 VINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLE 407
Query: 154 DLA 156
++A
Sbjct: 408 NMA 410
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 32 GNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
GNN P + ++ ++ +++ + PT +Q PI RD++ AQTGSGKT
Sbjct: 7 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 66
Query: 92 -------LAVINFDYPNSSEDYIHRIGRTGR 115
L+ I D P + + GR GR
Sbjct: 67 AAFLLPILSQIYSDGPGEALRAMKENGRYGR 97
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ-AKELIAVLTEASQPIPPQL 152
VIN+D P+ +DY+HRIGRTGR ++G A +FF P + A +L+ +L + Q +P L
Sbjct: 372 VINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFL 431
Query: 153 Q 153
+
Sbjct: 432 R 432
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G+++P P Q T + ++ ++ G++ PT IQ P+ SGRD++ AQTG
Sbjct: 44 VKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTG 103
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 104 SGKTAAFL 111
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
VIN+D P E+Y+HRIGRTG ++G A TF + +L A+L EA Q +PP L
Sbjct: 126 VINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 185
Query: 153 QDL 155
Q L
Sbjct: 186 QVL 188
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 18 EVEAFRQKKEITVKGNNIPCPT---QELTEGCFPNA-VLQHLKGQGFEEPTAIQAQGWPI 73
++ R K +I V+G ++P P Q+L + N+ +LQ++ GF+ PT IQ Q P+
Sbjct: 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPV 62
Query: 74 ALSGRDMVGIAQTGSGKTLA 93
L GR+++ A TGSGKTLA
Sbjct: 63 MLHGRELLASAPTGSGKTLA 82
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form
1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form
2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form
2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L+ L G+G PT IQA P+AL G+D++G A+TG+GKTLA
Sbjct: 12 ILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLA 54
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 35 IPCPTQELTEGC--FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92
IP PT + +P+ +L+ + G +PT IQ+Q WPI L G D++ +AQTG+GKTL
Sbjct: 14 IPKPTCRFKDAFQQYPD-LLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTL 72
Query: 93 AVI 95
+ +
Sbjct: 73 SYL 75
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo
Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo
Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In
Complex With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In
Complex With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L+ L G+G PT I+A P+AL G+D++G A+TG+GKTLA
Sbjct: 12 ILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLA 54
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
+IN+D PN+ E YIHRIGR+GR G A F ++ + +++ + +P +
Sbjct: 312 IINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQIDEMPMNVA 371
Query: 154 DL 155
DL
Sbjct: 372 DL 373
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
+L+ + GFE+P+AIQ + + GRD++ +Q+G+GKT
Sbjct: 12 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKT 52
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
+IN+D PN+ E YIHRIGR+GR G A F ++ + +++ + +P +
Sbjct: 312 IINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQIDEMPMNVA 371
Query: 154 DL 155
DL
Sbjct: 372 DL 373
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
+L+ + GFE+P+AIQ + + GRD++ +Q+G+GKT
Sbjct: 12 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKT 52
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
VINFD+P +E Y+HRIGR+GR G A T ++ K + L +PIP +
Sbjct: 115 VVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNI 174
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
+IN+D PN+ E YIHRIGR+GR G A F ++ + +++ + +P +
Sbjct: 349 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVA 408
Query: 154 DL 155
DL
Sbjct: 409 DL 410
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
+L+ + GFE+P+AIQ + + GRD++ +Q+G+GKT
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKT 89
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
+IN+D PN+ E YIHRIGR+GR G A F ++ + +++ + +P +
Sbjct: 348 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVA 407
Query: 154 DL 155
DL
Sbjct: 408 DL 409
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
+L+ + GFE+P+AIQ + + GRD++ +Q+G+GKT
Sbjct: 48 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKT 88
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
+IN+D PN+ E YIHRIGR+GR G A F ++ + +++ + +P +
Sbjct: 349 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVA 408
Query: 154 DL 155
DL
Sbjct: 409 DL 410
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
+L+ + GFE+P+AIQ + + GRD++ +Q+G+GKT
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKT 89
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
+IN+D PN+ E YIHRIGR+GR G A F ++ + +++ + +P +
Sbjct: 327 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVA 386
Query: 154 DL 155
DL
Sbjct: 387 DL 388
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
+L+ + GFE+P+AIQ + + GRD++ +Q+G+GKT
Sbjct: 27 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKT 67
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
G+ +PT IQ + P+AL GRD++G+A+TGSGKT
Sbjct: 62 GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKT 94
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 20/33 (60%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFF 126
VINFD P YIHRIGRTGR G A TF
Sbjct: 288 VINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 53 QHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
Q ++ GF+ T +Q++ P+ L G+++V A+TGSGKT A
Sbjct: 7 QAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAA 47
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130
VINFD+P ++E Y+HRIGR+GR G A N+
Sbjct: 329 VVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWND 366
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
GFE+P+ IQ + P+A++GRD++ A+ G+GKT A +
Sbjct: 40 GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFV 76
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
E + C +L + G+E+P+ IQ + PIALSGRD++ A+ G+GK+
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKS 54
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127
VIN+D P E Y+HR GRTGR + G A +F T
Sbjct: 107 VINYDLPLEKESYVHRTGRTGRAGNKGKAISFVT 140
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130
V NFD P S + Y+HRIGRT R GTA + ++
Sbjct: 102 VFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 138
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 95 INFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130
N+D P S+ Y+HR+ R GR + G A TF + N
Sbjct: 322 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 357
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+L+ + GFE P+ +Q + P A+ G D++ A++G GKT +
Sbjct: 18 LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 62
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 95 INFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130
N+D P S+ Y+HR+ R GR + G A TF + N
Sbjct: 323 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+L+ + GFE P+ +Q + P A+ G D++ A++G GKT +
Sbjct: 19 LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 63
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 95 INFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130
N+D P S+ Y+HR+ R GR + G A TF + N
Sbjct: 323 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+L+ + GFE P+ +Q + P A+ G D++ A++G GKT +
Sbjct: 19 LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 63
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 95 INFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130
N+D P S+ Y+HR+ R GR + G A TF + N
Sbjct: 104 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 52 LQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
L+ +K GF T IQ + L GRD++ A+TGSGKTLA +
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 109
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
+L+ + G GFEEP+AIQ + + G D++ AQ+G+GKT
Sbjct: 32 LLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKT 72
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P + E+YIHRIGR GR G A F T + +EL + + +P +
Sbjct: 331 VINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAXRELEKFYSTQIEELPSDIA 390
Query: 154 DLAN 157
L N
Sbjct: 391 TLLN 394
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 94 VINFDYP---NSSED---YIHRIGRTGRCASSGTAYTFFTPNN 130
V+N+D P N D YIHRIGRTGR G A +F N
Sbjct: 315 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLA 93
+L+ + F++P+ IQ + P+ L R+M+ +Q+G+GKT A
Sbjct: 16 LLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAA 60
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 94 VINFDYP---NSSED---YIHRIGRTGRCASSGTAYTFFTPNN 130
V+N+D P N D YIHRIGRTGR G A +F N
Sbjct: 315 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLA 93
+L+ + F++P+ IQ + P+ L R+M+ +Q+G+GKT A
Sbjct: 16 LLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAA 60
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
+L+ + G GFEEP+AIQ + + G D++ AQ+G+GKT
Sbjct: 33 LLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKT 73
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P + E+YIHRIGR GR G A F T + +EL + + +P +
Sbjct: 332 VINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 391
Query: 154 DLAN 157
L N
Sbjct: 392 TLLN 395
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In
Complex With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In
Complex With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
VL+ L+ GFE P+ +Q + P+ G D++ A++G+GKT
Sbjct: 35 VLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKT 75
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
+ ES+++ QK + K +++ Q L G F G GFEEP+AIQ +
Sbjct: 7 IEESQIQTNYQK--VVYKFDDMELDEQ-LLRGVF---------GYGFEEPSAIQQRAIMP 54
Query: 74 ALSGRDMVGIAQTGSGKT 91
+ G D++ AQ+G+GKT
Sbjct: 55 IIEGHDVLAQAQSGTGKT 72
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In
Complex With Adp
Length = 236
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 47 FP--NAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
FP L+ L+ + T IQ Q +AL G+D++G A+TGSGKTLA +
Sbjct: 30 FPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
VIN+ P + E Y HRIGRTGR G A + N ++ K+L
Sbjct: 310 VINYHLPQNPESYXHRIGRTGRAGKKGKAISII---NRREYKKL 350
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 42 LTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGR-DMVGIAQTGSGKT 91
E + +L ++ +GFE+PT IQ + P+ L+ ++V A+TGSGKT
Sbjct: 8 FNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKT 58
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
+L+ + G GFEEP+AIQ + + G D++ AQ+G+GKT
Sbjct: 25 LLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKT 65
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 94 VINFDYP---NSSED---YIHRIGRTGRCASSGTAYTFFTPNN 130
V+N+D P N D YIHRIGRTGR G A +F N
Sbjct: 107 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 149
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 94 VINFDYP---NSSED---YIHRIGRTGRCASSGTAYTFFTPNN 130
V+N+D P N D YIHRIGRTGR G A +F N
Sbjct: 108 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 150
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 94 VINFDYP---NSSED---YIHRIGRTGRCASSGTAYTFFTPNN 130
V+N+D P N D YIHRIGRTGR G A +F N
Sbjct: 109 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 151
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
++ PT IQ P L RD++ AQTGSGKT A +
Sbjct: 42 SYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFL 78
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 93 AVINFDYPNS------SEDYIHRIGRTGRCASSGTA 122
VINFD P +E Y+HRIGRTGR G A
Sbjct: 353 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 388
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLAVI 95
+LQ + GF P+ IQ P+ L+ ++++ +Q+G+GKT A +
Sbjct: 52 LLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 98
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 93 AVINFDYPNS------SEDYIHRIGRTGRCASSGTA 122
VINFD P +E Y+HRIGRTGR G A
Sbjct: 404 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 439
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLAVI 95
+LQ + GF P+ IQ P+ L+ ++++ +Q+G+GKT A +
Sbjct: 103 LLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+ T F +++ +K F +PT IQ + P AL G VG +QTG+GKT A +
Sbjct: 5 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYL 59
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 93 AVINFDYPNS------SEDYIHRIGRTGRCASSGTA 122
VINFD P +E Y+HRIGRTGR G A
Sbjct: 374 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 409
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLAVI 95
+LQ + GF P+ IQ P+ L+ ++++ +Q+G+GKT A +
Sbjct: 73 LLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 119
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 93 AVINFDYPNS------SEDYIHRIGRTGRCASSGTA 122
VINFD P +E Y+HRIGRTGR G A
Sbjct: 337 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 372
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLAVI 95
+LQ + GF P+ IQ P+ L+ ++++ +Q+G+GKT A +
Sbjct: 36 LLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 94 VINFDYPNSS------EDYIHRIGRTGRCASSGTAYTFF 126
V+NFD P E Y+HRIGRTGR G A+
Sbjct: 106 VVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI 144
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
++L+ + GFE+P+AIQ + + G D++ AQ+G+GKT
Sbjct: 21 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKT 65
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P + E+YIHRIGR GR G A T + + +++ + + +P +
Sbjct: 326 VINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVA 385
Query: 154 DL 155
DL
Sbjct: 386 DL 387
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
++L+ + GFE+P+AIQ + + G D++ AQ+G+GKT
Sbjct: 47 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKT 91
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P + E+YIHRIGR GR G A T + + +++ + + +P +
Sbjct: 352 VINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVA 411
Query: 154 DL 155
DL
Sbjct: 412 DL 413
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human
Translation Initiation Factor 4a-2
Length = 237
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 50 AVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
++L+ + GFE+P+AIQ + + G D++ AQ+G+GKT
Sbjct: 40 SLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKT 81
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 94 VINFDYPNSS------EDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQP 147
V+N+D P + Y+HRIGRTGR G + F ++ K +E+ A+ +P
Sbjct: 429 VVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV--HDKKSWEEMNAIQEYFQRP 486
Query: 148 I 148
I
Sbjct: 487 I 487
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 66 IQAQGWPIALSG--RDMVGIAQTGSGKTLA 93
IQ + P+ LS R+M+G +Q+G+GKT A
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAA 174
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPP-QL 152
V++FD P + E Y GR GR A F+ P + +A L + P QL
Sbjct: 308 VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD-------MAWLRRCLEEKPQGQL 360
Query: 153 QDLANSNPNSKGG 165
QD+ N+ G
Sbjct: 361 QDIERHKLNAMGA 373
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human
Uap56
Length = 220
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 30 VKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSG 89
VKG+ + + + +L+ + GFE P+ +Q + P A+ G D++ A++G G
Sbjct: 4 VKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMG 63
Query: 90 KTLAVI 95
KT +
Sbjct: 64 KTAVFV 69
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
V+ P+ +YIHRIGRT R G++ F + +EL
Sbjct: 108 VLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 151
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
V+ P+ +YIHRIGRT R G++ F + +EL
Sbjct: 108 VLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 151
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V++FD P + E Y GR GR A F+ P + + L E Q QLQ
Sbjct: 308 VVHFDIPRNIESYYQETGRAGRDGLPAEAXLFYDPADXAWLRR---CLEEKPQ---GQLQ 361
Query: 154 DLANSNPNSKGG 165
D+ N+ G
Sbjct: 362 DIERHKLNAXGA 373
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
V+ P+ +YIHRIGRT R G++ F + +EL
Sbjct: 108 VLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 151
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 33.9 bits (76), Expect = 0.050, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
V+ P+ +YIHRIGRT R G++ F + +EL
Sbjct: 363 VLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 406
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 33.5 bits (75), Expect = 0.052, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
V+ P+ +YIHRIGRT R G++ F + +EL
Sbjct: 414 VLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 457
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 33.5 bits (75), Expect = 0.063, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
V+ P+ +YIHRIGRT R G++ F + +EL
Sbjct: 363 VLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 406
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 50 AVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
++L+ + GFE P+AIQ + + G D++ AQ+G+G T
Sbjct: 25 SLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXT 66
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLA 93
+L+ + F++P+ IQ + P+ L R+M+ +Q+G+GKT A
Sbjct: 33 LLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAA 77
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLAVI 95
+LQ + GF P+ IQ P+ L+ ++++ +Q+G+GKT A +
Sbjct: 103 LLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLAVI 95
+LQ + GF P+ IQ P+ L+ ++++ +Q+G+GKT A +
Sbjct: 36 LLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82
>pdb|4DCG|A Chain A, Vaccinia Methyltransferase Vp39 Mutant D182a Complexed
With M7g And S-Adenosylhomocysteine
Length = 307
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 93 AVINFDYPNSSEDYIHR--IGRTGRC 116
V+NFDYPN DY H + RT C
Sbjct: 247 VVVNFDYPNQEYDYFHMYFMLRTVYC 272
>pdb|1VPT|A Chain A, As11 Variant Of Vaccinia Virus Protein Vp39 In Complex
With S- Adenosyl-L-Methionine
Length = 348
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 93 AVINFDYPNSSEDYIHR--IGRTGRC 116
V+NFDYPN DY H + RT C
Sbjct: 262 VVVNFDYPNQEYDYFHMYFMLRTVYC 287
>pdb|2GA9|A Chain A, Crystal Structure Of The Heterodimeric Vaccinia Virus
Polyadenylate Polymerase With Bound Atp-Gamma-S
pdb|3ER8|A Chain A, Crystal Structure Of The Heterodimeric Vaccinia Virus Mrna
Polyadenylate Polymerase Complex With Two Fragments Of
Rna
pdb|3ER8|B Chain B, Crystal Structure Of The Heterodimeric Vaccinia Virus Mrna
Polyadenylate Polymerase Complex With Two Fragments Of
Rna
pdb|3ER9|A Chain A, Crystal Structure Of The Heterodimeric Vaccinia Virus Mrna
Polyadenylate Polymerase Complex With Uu And 3'-deoxy
Atp
pdb|3ERC|A Chain A, Crystal Structure Of The Heterodimeric Vaccinia Virus Mrna
Polyadenylate Polymerase With Three Fragments Of Rna And
3'-Deoxy Atp
pdb|3ERC|B Chain B, Crystal Structure Of The Heterodimeric Vaccinia Virus Mrna
Polyadenylate Polymerase With Three Fragments Of Rna And
3'-Deoxy Atp
Length = 297
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 93 AVINFDYPNSSEDYIHR--IGRTGRC 116
V+NFDYPN DY H + RT C
Sbjct: 247 VVVNFDYPNQEYDYFHMYFMLRTVYC 272
>pdb|1JTE|A Chain A, Crystal Structure Analysis Of Vp39 F180w Mutant
pdb|1JTF|A Chain A, Crystal Structure Analysis Of Vp39-f180w Mutant And
M7gpppg Complex
Length = 307
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 93 AVINFDYPNSSEDYIHR--IGRTGRC 116
V+NFDYPN DY H + RT C
Sbjct: 247 VVVNFDYPNQEYDYFHMYFMLRTVYC 272
>pdb|1JSZ|A Chain A, Crystal Structure Analysis Of N7,9-Dimethylguanine-Vp39
Complex
pdb|1BKY|A Chain A, Vaccinia Methyltransferase Vp39 Complexed With M1cyt And
S- Adenosylhomocysteine
pdb|3MAG|A Chain A, Vaccinia Methyltransferase Vp39 Complexed With M3ade And
S- Adenosylhomocysteine
Length = 307
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 93 AVINFDYPNSSEDYIHR--IGRTGRC 116
V+NFDYPN DY H + RT C
Sbjct: 247 VVVNFDYPNQEYDYFHMYFMLRTVYC 272
>pdb|1EAM|A Chain A, Vaccinia Methyltransferase Vp39 Mutant (Ec: 2.7.7.19)
Length = 307
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 93 AVINFDYPNSSEDYIHR--IGRTGRC 116
V+NFDYPN DY H + RT C
Sbjct: 247 VVVNFDYPNQEYDYFHMYFMLRTVYC 272
>pdb|1P39|A Chain A, Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S- Adenosylhomocysteine And M7g(5')pppg
pdb|1V39|A Chain A, Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S- Adenosylhomocysteine And M7g(5')pppg
pdb|1VP9|A Chain A, Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S- Adenosylhomocysteine
pdb|2VP3|A Chain A, Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S- Adenosylhomocysteine And M7g(5')pppg
Length = 322
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 93 AVINFDYPNSSEDYIHR--IGRTGRC 116
V+NFDYPN DY H + RT C
Sbjct: 262 VVVNFDYPNQEYDYFHMYFMLRTVYC 287
>pdb|1VP3|A Chain A, Vaccinia Virus Protein Vp39 In Complex With
S-Adenosylhomocysteine
Length = 348
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 93 AVINFDYPNSSEDYIHR--IGRTGRC 116
V+NFDYPN DY H + RT C
Sbjct: 262 VVVNFDYPNQEYDYFHMYFMLRTVYC 287
>pdb|1EQA|A Chain A, Vaccinia Methyltransferase Vp39 Mutant E233q Complexed
With M7g And S-Adenosylhomocysteine
Length = 297
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 93 AVINFDYPNSSEDYIHR--IGRTGRC 116
V+NFDYPN DY H + RT C
Sbjct: 247 VVVNFDYPNQEYDYFHMYFMLRTVYC 272
>pdb|1AV6|A Chain A, Vaccinia Methyltransferase Vp39 Complexed With M7g Capped
Rna Hexamer And S-Adenosylhomocysteine
Length = 295
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 93 AVINFDYPNSSEDYIHR--IGRTGRC 116
V+NFDYPN DY H + RT C
Sbjct: 245 VVVNFDYPNQEYDYFHMYFMLRTVYC 270
>pdb|1B42|A Chain A, Vaccinia Methyltransferase Vp39 Complexed With M1ade And
S- Adenosylhomocysteine
pdb|3MCT|A Chain A, Vaccinia Methyltransferase Vp39 Complexed With M3cyt And
S- Adenosylhomocysteine
Length = 297
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 93 AVINFDYPNSSEDYIHR--IGRTGRC 116
V+NFDYPN DY H + RT C
Sbjct: 247 VVVNFDYPNQEYDYFHMYFMLRTVYC 272
>pdb|2GAF|A Chain A, Crystal Structure Of The Vaccinia Polyadenylate Polymerase
Heterodimer (Apo Form)
Length = 297
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 93 AVINFDYPNSSEDYIHRIG--RTGRC 116
V+NFDYPN DY H RT C
Sbjct: 247 VVVNFDYPNQEYDYFHXYFXLRTVYC 272
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P + E+YIHRIGR GR G A F T + +EL + + +P +
Sbjct: 102 VINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 161
Query: 154 DLAN 157
L N
Sbjct: 162 TLLN 165
>pdb|3AGR|A Chain A, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
pdb|3AGR|B Chain B, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
Length = 602
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 44 EGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
EG + L HL G+ E+P + + D+VG+ + G T V
Sbjct: 212 EGLYAFLALNHLSGRLGEDPARCYVDEYGMKQCRNDLVGVVEVGGASTQIVF 263
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 1 MHNHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEG----CFPNAVLQHLK 56
+ H++ ERAAR++ VEAF + + G+ P E G P V+
Sbjct: 291 FYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITD 350
Query: 57 GQGFEEPTAIQAQGWPIA---LSGRDMVGIAQTGSGKTLA 93
GQ F E A P +S + G AQT K L+
Sbjct: 351 GQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLS 390
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
N + Q++A LS S EA ++ ++ Q+ + PN VL+HL F+
Sbjct: 94 NQSFIQQKANLLSSSNFEATKK---------SVLKQVQDFEDNDHPNRVLEHLHSTAFQN 144
Query: 63 -PTAIQAQG 70
P ++ +G
Sbjct: 145 TPLSLPTRG 153
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
N + Q++A LS S EA ++ ++ Q+ + PN VL+HL F+
Sbjct: 95 NQSFIQQKANLLSSSNFEATKK---------SVLKQVQDFEDNDHPNRVLEHLHSTAFQN 145
Query: 63 -PTAIQAQG 70
P ++ +G
Sbjct: 146 TPLSLPTRG 154
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 26.6 bits (57), Expect = 6.2, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 40 QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92
+EL E AV LK +G EE QA+ SG++++ T +GKTL
Sbjct: 4 EELAESISSYAV-GILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTL 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,047,660
Number of Sequences: 62578
Number of extensions: 207364
Number of successful extensions: 541
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 128
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)