Query psy7691
Match_columns 165
No_of_seqs 132 out of 1888
Neff 7.8
Searched_HMMs 46136
Date Sat Aug 17 00:55:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0336|consensus 99.9 2.9E-26 6.2E-31 191.0 10.7 92 2-93 174-273 (629)
2 PTZ00110 helicase; Provisional 99.9 3.3E-25 7.2E-30 194.3 16.5 92 2-93 91-183 (545)
3 KOG0341|consensus 99.9 1.1E-25 2.3E-30 186.7 10.0 92 2-93 132-223 (610)
4 KOG0333|consensus 99.9 7.6E-23 1.6E-27 174.4 8.7 84 10-93 215-298 (673)
5 KOG0339|consensus 99.9 2.4E-22 5.2E-27 171.0 8.5 92 2-93 185-276 (731)
6 PLN00206 DEAD-box ATP-dependen 99.9 1.6E-21 3.4E-26 170.3 12.8 138 2-148 82-223 (518)
7 KOG0328|consensus 99.8 2.2E-20 4.7E-25 149.9 11.0 67 27-93 14-80 (400)
8 KOG0334|consensus 99.8 1.7E-20 3.6E-25 169.6 9.8 137 2-148 326-465 (997)
9 KOG0330|consensus 99.8 3.5E-20 7.6E-25 153.6 9.8 56 38-93 59-114 (476)
10 KOG0335|consensus 99.8 1.7E-20 3.7E-25 159.7 7.8 68 26-93 60-127 (482)
11 KOG0331|consensus 99.8 7.8E-20 1.7E-24 157.6 5.6 138 2-148 23-192 (519)
12 KOG0326|consensus 99.7 5.6E-18 1.2E-22 138.0 4.9 60 94-153 394-453 (459)
13 KOG0340|consensus 99.7 1E-16 2.2E-21 131.9 8.0 98 39-149 6-103 (442)
14 COG0513 SrmB Superfamily II DN 99.7 1.2E-16 2.6E-21 139.5 8.1 98 40-148 29-126 (513)
15 KOG0343|consensus 99.7 1.1E-16 2.4E-21 137.8 6.3 123 11-147 45-167 (758)
16 KOG0346|consensus 99.6 1E-16 2.2E-21 134.9 4.3 104 40-153 19-125 (569)
17 PRK04837 ATP-dependent RNA hel 99.6 5.7E-16 1.2E-20 132.0 8.9 98 39-145 7-107 (423)
18 KOG0344|consensus 99.6 5.4E-16 1.2E-20 133.9 8.0 128 19-155 111-245 (593)
19 KOG0332|consensus 99.6 1.3E-15 2.8E-20 126.2 8.3 56 38-93 88-145 (477)
20 KOG0338|consensus 99.6 6.1E-16 1.3E-20 132.2 5.1 96 39-145 180-276 (691)
21 PRK10590 ATP-dependent RNA hel 99.6 3E-15 6.5E-20 128.9 8.3 96 41-145 2-99 (456)
22 PRK04537 ATP-dependent RNA hel 99.6 4.3E-15 9.3E-20 131.3 8.8 99 39-146 8-109 (572)
23 PRK11192 ATP-dependent RNA hel 99.6 4.1E-15 8.8E-20 127.0 8.3 95 41-144 2-96 (434)
24 KOG0331|consensus 99.6 9.4E-15 2E-19 126.3 10.3 116 36-159 341-478 (519)
25 KOG0327|consensus 99.6 3.4E-15 7.4E-20 123.7 6.3 62 94-155 335-396 (397)
26 PRK11776 ATP-dependent RNA hel 99.6 7.9E-15 1.7E-19 126.2 8.2 92 40-144 4-95 (460)
27 KOG0348|consensus 99.6 7.7E-15 1.7E-19 126.1 7.8 103 38-149 134-239 (708)
28 KOG0345|consensus 99.6 9E-15 2E-19 124.0 7.9 97 40-145 4-103 (567)
29 PRK11634 ATP-dependent RNA hel 99.5 1.6E-14 3.5E-19 128.9 7.8 93 39-144 5-97 (629)
30 KOG0342|consensus 99.5 1.7E-14 3.8E-19 122.6 6.8 100 38-146 80-179 (543)
31 PRK01297 ATP-dependent RNA hel 99.5 7.8E-14 1.7E-18 120.6 9.0 101 38-147 85-188 (475)
32 KOG0347|consensus 99.5 3.7E-14 8E-19 122.3 6.8 102 36-146 177-288 (731)
33 PTZ00424 helicase 45; Provisio 99.5 2.2E-13 4.7E-18 114.8 8.7 95 38-145 26-120 (401)
34 KOG4284|consensus 99.4 3.3E-13 7.2E-18 118.3 8.5 61 33-93 18-78 (980)
35 KOG0337|consensus 99.4 2.8E-13 6.2E-18 113.8 4.7 95 40-146 21-115 (529)
36 TIGR03817 DECH_helic helicase/ 99.4 1E-12 2.2E-17 119.3 8.6 96 36-145 8-105 (742)
37 cd00268 DEADc DEAD-box helicas 99.3 6.1E-12 1.3E-16 96.5 8.3 92 42-144 1-92 (203)
38 COG0513 SrmB Superfamily II DN 99.3 2.1E-12 4.5E-17 113.0 6.2 98 39-144 276-396 (513)
39 KOG0340|consensus 99.3 3.3E-12 7.2E-17 105.5 5.7 105 37-149 255-381 (442)
40 PLN00206 DEAD-box ATP-dependen 99.3 5.6E-12 1.2E-16 110.4 7.3 79 70-156 424-502 (518)
41 COG1201 Lhr Lhr-like helicases 99.3 5.7E-12 1.2E-16 114.3 6.2 90 46-145 7-97 (814)
42 KOG0344|consensus 99.3 9.2E-12 2E-16 108.0 6.9 116 35-158 386-524 (593)
43 KOG0342|consensus 99.2 7.3E-12 1.6E-16 106.8 4.7 61 70-138 386-446 (543)
44 PRK02362 ski2-like helicase; P 99.2 3.6E-11 7.8E-16 109.2 7.0 88 41-144 2-90 (737)
45 PRK13767 ATP-dependent helicas 99.2 5E-11 1.1E-15 110.1 7.5 87 46-142 17-105 (876)
46 PRK00254 ski2-like helicase; P 99.1 1.3E-10 2.8E-15 105.4 7.2 88 41-143 2-90 (720)
47 KOG0334|consensus 99.1 2.3E-10 5E-15 104.6 7.8 135 14-160 595-751 (997)
48 KOG0338|consensus 99.1 1.6E-10 3.4E-15 99.5 5.9 67 70-144 482-548 (691)
49 PRK04837 ATP-dependent RNA hel 99.1 1.4E-10 3E-15 98.9 4.5 108 38-153 257-386 (423)
50 KOG0350|consensus 99.0 4.1E-10 8.9E-15 96.6 6.7 77 69-153 488-568 (620)
51 PRK11634 ATP-dependent RNA hel 99.0 9.1E-10 2E-14 98.6 7.2 102 39-148 249-371 (629)
52 KOG0329|consensus 99.0 1.4E-09 2.9E-14 87.1 7.3 97 40-150 42-139 (387)
53 KOG0348|consensus 99.0 5.1E-10 1.1E-14 96.8 5.2 67 67-141 500-566 (708)
54 KOG0347|consensus 99.0 4.9E-10 1.1E-14 97.2 4.9 101 35-144 462-585 (731)
55 KOG0346|consensus 99.0 8.5E-10 1.8E-14 93.6 5.6 62 74-143 363-424 (569)
56 PRK01172 ski2-like helicase; P 99.0 1.1E-09 2.5E-14 98.5 6.8 86 41-143 2-87 (674)
57 KOG0350|consensus 98.9 2.3E-09 4.9E-14 92.1 7.4 99 38-148 125-242 (620)
58 KOG0345|consensus 98.9 1.3E-09 2.8E-14 93.0 4.9 54 69-130 312-365 (567)
59 PRK11776 ATP-dependent RNA hel 98.9 2.1E-09 4.6E-14 92.6 6.4 102 37-146 243-366 (460)
60 PRK04537 ATP-dependent RNA hel 98.9 3.5E-09 7.6E-14 93.9 6.8 99 38-144 259-379 (572)
61 PRK10590 ATP-dependent RNA hel 98.9 2.3E-09 5.1E-14 92.4 5.1 100 38-145 247-368 (456)
62 PRK11192 ATP-dependent RNA hel 98.9 4E-09 8.7E-14 90.1 6.3 107 38-144 247-367 (434)
63 TIGR00614 recQ_fam ATP-depende 98.9 3.3E-09 7.2E-14 91.9 5.8 69 58-145 7-75 (470)
64 PRK12899 secA preprotein trans 98.8 4.7E-09 1E-13 96.3 6.1 118 9-147 32-161 (970)
65 PRK11057 ATP-dependent DNA hel 98.8 1.4E-08 3E-13 90.7 7.0 75 52-145 14-89 (607)
66 KOG0343|consensus 98.8 7.3E-09 1.6E-13 90.1 4.9 62 70-139 371-433 (758)
67 COG1205 Distinct helicase fami 98.8 1.6E-08 3.6E-13 93.1 7.2 87 47-146 55-144 (851)
68 TIGR02621 cas3_GSU0051 CRISPR- 98.7 2E-08 4.3E-13 91.9 6.6 83 52-148 5-89 (844)
69 PRK01297 ATP-dependent RNA hel 98.7 1.4E-08 3E-13 88.0 5.2 99 39-145 338-458 (475)
70 PTZ00424 helicase 45; Provisio 98.7 1E-08 2.2E-13 86.4 3.0 113 39-151 271-396 (401)
71 TIGR01389 recQ ATP-dependent D 98.7 3.1E-08 6.6E-13 88.1 6.1 75 54-147 4-79 (591)
72 TIGR01054 rgy reverse gyrase. 98.7 4.3E-08 9.3E-13 93.0 7.0 84 47-146 63-146 (1171)
73 KOG0329|consensus 98.7 1.8E-08 4E-13 80.7 3.7 76 69-152 303-379 (387)
74 PF00270 DEAD: DEAD/DEAH box h 98.7 3.4E-08 7.3E-13 73.1 4.9 70 64-147 1-70 (169)
75 PLN03137 ATP-dependent DNA hel 98.6 5.1E-08 1.1E-12 91.3 6.8 87 39-133 684-791 (1195)
76 PRK14701 reverse gyrase; Provi 98.6 4.9E-08 1.1E-12 94.9 6.7 82 47-145 64-146 (1638)
77 PRK09401 reverse gyrase; Revie 98.6 6E-08 1.3E-12 92.0 7.1 81 50-147 68-149 (1176)
78 TIGR00614 recQ_fam ATP-depende 98.6 5.7E-08 1.2E-12 84.2 6.3 92 39-138 230-342 (470)
79 PLN03137 ATP-dependent DNA hel 98.6 6.8E-08 1.5E-12 90.4 6.9 75 49-142 446-522 (1195)
80 KOG0349|consensus 98.6 1.4E-08 3.1E-13 86.4 0.6 58 40-100 2-59 (725)
81 PRK11057 ATP-dependent DNA hel 98.5 1.3E-07 2.9E-12 84.4 5.6 97 39-135 240-349 (607)
82 TIGR00580 mfd transcription-re 98.5 2.4E-07 5.1E-12 86.2 6.9 85 47-148 436-527 (926)
83 TIGR03817 DECH_helic helicase/ 98.5 1.2E-07 2.7E-12 86.4 4.8 69 70-146 335-405 (742)
84 TIGR00643 recG ATP-dependent D 98.5 2.8E-07 6.1E-12 82.7 6.4 81 49-146 223-309 (630)
85 PRK10917 ATP-dependent DNA hel 98.5 2.9E-07 6.2E-12 83.3 6.5 79 52-147 252-336 (681)
86 COG0514 RecQ Superfamily II DN 98.4 3.1E-07 6.6E-12 81.3 5.4 103 36-138 230-346 (590)
87 PRK10689 transcription-repair 98.4 7.4E-07 1.6E-11 84.6 6.9 81 49-146 588-674 (1147)
88 TIGR01389 recQ ATP-dependent D 98.3 8.8E-07 1.9E-11 78.8 5.4 97 39-135 228-337 (591)
89 PRK12898 secA preprotein trans 98.2 1.7E-06 3.7E-11 77.6 6.0 69 58-145 100-168 (656)
90 PRK12898 secA preprotein trans 98.2 1.1E-06 2.3E-11 79.0 4.4 91 37-130 474-587 (656)
91 PRK09200 preprotein translocas 98.2 2.2E-06 4.8E-11 78.4 4.9 92 36-130 428-542 (790)
92 PHA02558 uvsW UvsW helicase; P 98.0 2.8E-05 6E-10 68.1 8.6 70 60-144 112-181 (501)
93 PRK04914 ATP-dependent helicas 98.0 1.2E-05 2.7E-10 75.1 5.8 108 36-143 493-617 (956)
94 KOG0337|consensus 97.9 3.7E-06 8.1E-11 71.5 1.0 102 37-146 262-385 (529)
95 smart00487 DEXDc DEAD-like hel 97.8 4.2E-05 9E-10 56.7 5.9 75 57-145 3-78 (201)
96 COG1202 Superfamily II helicas 97.8 5.2E-05 1.1E-09 67.0 7.2 89 40-143 194-283 (830)
97 PHA02653 RNA helicase NPH-II; 97.8 5.9E-05 1.3E-09 68.3 7.1 72 65-143 167-244 (675)
98 TIGR00963 secA preprotein tran 97.8 6.5E-05 1.4E-09 68.4 6.8 94 36-130 405-518 (745)
99 PRK05298 excinuclease ABC subu 97.7 6.5E-05 1.4E-09 67.9 6.6 101 43-152 454-589 (652)
100 PRK09200 preprotein translocas 97.7 5.1E-05 1.1E-09 69.7 5.3 68 58-144 75-142 (790)
101 TIGR01407 dinG_rel DnaQ family 97.7 8.2E-05 1.8E-09 69.1 6.6 75 47-138 231-309 (850)
102 PRK12900 secA preprotein trans 97.7 7.5E-05 1.6E-09 69.5 6.1 108 36-146 598-732 (1025)
103 TIGR03714 secA2 accessory Sec 97.7 5E-05 1.1E-09 69.3 4.9 107 36-144 424-556 (762)
104 PRK05580 primosome assembly pr 97.7 0.00014 3E-09 66.1 7.2 67 62-144 144-213 (679)
105 PRK09751 putative ATP-dependen 97.6 0.00017 3.8E-09 70.0 7.7 55 69-132 332-386 (1490)
106 TIGR00963 secA preprotein tran 97.6 7E-05 1.5E-09 68.1 4.8 72 58-148 53-124 (745)
107 TIGR00631 uvrb excinuclease AB 97.5 0.00019 4.2E-09 64.9 6.3 86 43-137 450-561 (655)
108 COG1204 Superfamily II helicas 97.5 0.00011 2.3E-09 67.5 4.7 83 45-142 14-97 (766)
109 TIGR03158 cas3_cyano CRISPR-as 97.5 0.00015 3.2E-09 61.0 4.4 55 66-139 1-57 (357)
110 TIGR01587 cas3_core CRISPR-ass 97.3 0.00017 3.6E-09 60.0 3.4 52 79-144 1-52 (358)
111 KOG0349|consensus 97.3 9.8E-05 2.1E-09 63.4 2.0 103 18-128 487-614 (725)
112 PF04851 ResIII: Type III rest 97.3 0.00035 7.5E-09 51.8 4.8 61 63-142 4-71 (184)
113 KOG0351|consensus 97.3 0.0009 2E-08 62.6 8.1 94 39-132 489-595 (941)
114 smart00488 DEXDc2 DEAD-like he 97.3 0.00048 1E-08 56.4 5.3 72 63-144 9-84 (289)
115 smart00489 DEXDc3 DEAD-like he 97.3 0.00048 1E-08 56.4 5.3 72 63-144 9-84 (289)
116 PRK13767 ATP-dependent helicas 97.3 0.00055 1.2E-08 63.9 6.2 48 72-127 348-396 (876)
117 TIGR03714 secA2 accessory Sec 97.3 0.00036 7.8E-09 63.9 4.8 68 58-144 67-134 (762)
118 PRK12906 secA preprotein trans 97.2 0.0023 4.9E-08 59.0 9.0 105 36-143 440-571 (796)
119 PRK13766 Hef nuclease; Provisi 97.2 0.0011 2.3E-08 60.9 6.8 93 37-130 366-480 (773)
120 TIGR00643 recG ATP-dependent D 97.1 0.00057 1.2E-08 61.5 4.9 45 93-137 529-575 (630)
121 PRK09751 putative ATP-dependen 97.1 0.00017 3.6E-09 70.1 1.4 53 82-143 1-59 (1490)
122 KOG0952|consensus 97.1 0.00053 1.1E-08 64.0 4.4 81 58-147 106-190 (1230)
123 PRK10917 ATP-dependent DNA hel 97.1 0.0011 2.3E-08 60.3 6.1 35 93-127 552-587 (681)
124 PF00271 Helicase_C: Helicase 97.1 0.00017 3.7E-09 46.8 0.7 25 93-117 54-78 (78)
125 PHA02653 RNA helicase NPH-II; 97.1 0.00051 1.1E-08 62.4 3.9 49 73-130 455-515 (675)
126 PRK07246 bifunctional ATP-depe 97.1 0.00083 1.8E-08 62.3 5.3 70 56-143 240-314 (820)
127 COG1111 MPH1 ERCC4-like helica 97.0 0.004 8.6E-08 54.4 8.5 97 37-134 367-486 (542)
128 COG0514 RecQ Superfamily II DN 97.0 0.0019 4.1E-08 57.6 6.7 72 55-145 9-81 (590)
129 TIGR00580 mfd transcription-re 97.0 0.0015 3.3E-08 61.3 6.2 51 71-129 719-770 (926)
130 TIGR03117 cas_csf4 CRISPR-asso 96.9 0.0012 2.7E-08 59.5 4.8 59 73-145 12-70 (636)
131 PRK02362 ski2-like helicase; P 96.9 0.0019 4E-08 59.2 6.0 43 99-142 365-409 (737)
132 TIGR01587 cas3_core CRISPR-ass 96.8 0.0022 4.9E-08 53.3 5.0 26 93-120 298-323 (358)
133 PRK10689 transcription-repair 96.6 0.0024 5.2E-08 61.2 4.7 47 71-129 868-919 (1147)
134 PRK13766 Hef nuclease; Provisi 96.6 0.0032 7E-08 57.8 5.4 67 62-144 15-81 (773)
135 KOG0351|consensus 96.6 0.01 2.3E-07 55.7 8.5 69 54-141 256-324 (941)
136 PRK11664 ATP-dependent RNA hel 96.5 0.003 6.5E-08 58.6 4.2 55 72-142 15-69 (812)
137 TIGR02621 cas3_GSU0051 CRISPR- 96.5 0.0026 5.6E-08 59.0 3.7 34 93-128 356-390 (844)
138 COG4581 Superfamily II RNA hel 96.4 0.003 6.6E-08 59.5 3.7 78 51-145 109-186 (1041)
139 COG1110 Reverse gyrase [DNA re 96.3 0.01 2.2E-07 55.8 6.6 78 49-143 69-147 (1187)
140 COG1061 SSL2 DNA or RNA helica 96.3 0.0087 1.9E-07 51.8 5.9 61 62-141 36-100 (442)
141 PRK13104 secA preprotein trans 96.3 0.006 1.3E-07 56.8 5.1 72 58-148 79-150 (896)
142 PF13245 AAA_19: Part of AAA d 96.2 0.016 3.5E-07 38.0 5.3 55 75-141 7-62 (76)
143 TIGR01970 DEAH_box_HrpB ATP-de 96.1 0.0093 2E-07 55.4 5.3 55 72-142 12-66 (819)
144 cd00079 HELICc Helicase superf 96.0 0.0035 7.6E-08 43.7 1.7 87 38-124 30-130 (131)
145 TIGR00604 rad3 DNA repair heli 96.0 0.011 2.5E-07 53.9 5.4 72 60-144 8-83 (705)
146 KOG0352|consensus 95.9 0.034 7.4E-07 48.1 7.1 80 50-148 6-88 (641)
147 TIGR00603 rad25 DNA repair hel 95.9 0.019 4.1E-07 52.7 5.9 42 93-134 563-612 (732)
148 PRK12904 preprotein translocas 95.7 0.01 2.2E-07 55.0 3.7 70 58-146 78-147 (830)
149 KOG0354|consensus 95.7 0.02 4.4E-07 52.3 5.5 71 62-147 62-132 (746)
150 PF13086 AAA_11: AAA domain; P 95.6 0.02 4.4E-07 43.7 4.5 70 63-141 2-74 (236)
151 KOG0353|consensus 95.5 0.016 3.5E-07 49.4 3.9 51 47-100 78-129 (695)
152 TIGR01970 DEAH_box_HrpB ATP-de 95.5 0.0096 2.1E-07 55.3 2.8 36 93-129 283-336 (819)
153 PRK09694 helicase Cas3; Provis 95.4 0.027 5.8E-07 52.8 5.3 64 62-139 286-349 (878)
154 PF00580 UvrD-helicase: UvrD/R 95.4 0.019 4.1E-07 46.1 3.9 65 63-142 1-66 (315)
155 smart00490 HELICc helicase sup 95.4 0.011 2.3E-07 37.7 1.9 25 93-117 58-82 (82)
156 PRK08074 bifunctional ATP-depe 95.3 0.033 7.1E-07 52.5 5.6 65 59-139 255-323 (928)
157 KOG0352|consensus 95.3 0.032 6.9E-07 48.3 4.9 87 44-135 264-368 (641)
158 PRK11131 ATP-dependent RNA hel 95.2 0.012 2.6E-07 56.9 2.5 86 36-130 286-412 (1294)
159 cd00046 DEXDc DEAD-like helica 95.2 0.032 7E-07 38.4 4.2 53 79-145 2-54 (144)
160 PRK11664 ATP-dependent RNA hel 95.2 0.015 3.2E-07 54.1 2.8 36 93-129 286-339 (812)
161 PRK01172 ski2-like helicase; P 95.1 0.03 6.5E-07 50.8 4.7 41 100-142 347-389 (674)
162 PRK00254 ski2-like helicase; P 95.1 0.031 6.7E-07 51.2 4.8 35 96-130 352-389 (720)
163 PRK11448 hsdR type I restricti 94.9 0.057 1.2E-06 51.9 6.0 71 62-146 413-488 (1123)
164 PRK11747 dinG ATP-dependent DN 94.8 0.068 1.5E-06 48.9 6.0 38 59-100 23-69 (697)
165 PHA02558 uvsW UvsW helicase; P 94.8 0.023 5E-07 49.9 2.9 90 37-126 346-449 (501)
166 KOG0354|consensus 94.8 0.064 1.4E-06 49.1 5.8 89 37-127 414-527 (746)
167 TIGR01967 DEAH_box_HrpA ATP-de 94.6 0.032 7E-07 54.1 3.5 27 102-129 378-404 (1283)
168 COG1199 DinG Rad3-related DNA 93.8 0.12 2.6E-06 46.6 5.5 65 59-139 13-81 (654)
169 PRK13107 preprotein translocas 93.7 0.064 1.4E-06 50.2 3.4 68 58-144 79-146 (908)
170 PRK05580 primosome assembly pr 93.7 0.13 2.7E-06 47.1 5.3 37 94-130 504-550 (679)
171 KOG0951|consensus 93.5 0.14 3.1E-06 49.5 5.3 88 45-143 294-386 (1674)
172 COG2805 PilT Tfp pilus assembl 93.5 0.085 1.8E-06 43.8 3.4 42 33-92 99-140 (353)
173 PF13604 AAA_30: AAA domain; P 93.3 0.16 3.4E-06 39.1 4.6 63 63-141 2-66 (196)
174 TIGR03158 cas3_cyano CRISPR-as 92.9 0.056 1.2E-06 45.4 1.8 65 39-114 276-357 (357)
175 cd01126 TraG_VirD4 The TraG/Tr 92.5 0.25 5.3E-06 41.8 5.0 20 79-101 1-20 (384)
176 TIGR00595 priA primosomal prot 92.0 0.12 2.5E-06 45.7 2.6 47 82-144 2-48 (505)
177 COG0556 UvrB Helicase subunit 92.0 0.25 5.4E-06 44.0 4.5 65 59-143 10-79 (663)
178 COG5008 PilU Tfp pilus assembl 91.3 0.45 9.7E-06 39.2 5.0 97 11-112 56-174 (375)
179 COG1198 PriA Primosomal protei 91.3 0.8 1.7E-05 42.3 7.2 65 62-142 198-266 (730)
180 TIGR00376 DNA helicase, putati 91.0 0.51 1.1E-05 42.9 5.7 66 62-143 157-223 (637)
181 TIGR00595 priA primosomal prot 90.8 0.34 7.5E-06 42.7 4.3 38 93-130 335-383 (505)
182 TIGR00348 hsdR type I site-spe 90.7 0.52 1.1E-05 43.0 5.5 69 64-146 240-318 (667)
183 PF02534 T4SS-DNA_transf: Type 90.5 0.35 7.5E-06 41.8 4.0 52 78-147 45-96 (469)
184 PRK13897 type IV secretion sys 90.4 0.53 1.1E-05 42.6 5.1 21 78-101 159-179 (606)
185 TIGR00603 rad25 DNA repair hel 90.4 0.61 1.3E-05 43.1 5.6 61 63-142 256-319 (732)
186 COG4098 comFA Superfamily II D 88.7 0.76 1.7E-05 39.0 4.5 66 62-143 97-166 (441)
187 TIGR01074 rep ATP-dependent DN 88.6 0.73 1.6E-05 41.7 4.8 65 63-142 2-67 (664)
188 KOG0353|consensus 88.5 0.5 1.1E-05 40.6 3.4 86 40-130 322-468 (695)
189 PRK09694 helicase Cas3; Provis 88.0 1.3 2.9E-05 41.7 6.1 65 94-160 642-728 (878)
190 TIGR02785 addA_Gpos recombinat 87.5 0.91 2E-05 44.3 4.9 68 63-144 2-72 (1232)
191 TIGR01447 recD exodeoxyribonuc 87.3 1.4 3E-05 39.8 5.6 70 65-145 148-217 (586)
192 PF02562 PhoH: PhoH-like prote 87.3 0.51 1.1E-05 36.9 2.5 34 62-95 4-37 (205)
193 PRK10875 recD exonuclease V su 87.0 1.6 3.5E-05 39.6 5.9 70 64-145 154-223 (615)
194 PRK11054 helD DNA helicase IV; 86.9 2 4.2E-05 39.5 6.5 66 61-141 195-261 (684)
195 COG1200 RecG RecG-like helicas 86.7 0.98 2.1E-05 41.1 4.3 82 48-145 248-339 (677)
196 TIGR01448 recD_rel helicase, p 86.4 2.4 5.1E-05 39.2 6.7 35 58-93 320-354 (720)
197 PRK13850 type IV secretion sys 86.4 1 2.2E-05 41.3 4.3 21 78-101 140-160 (670)
198 PRK13822 conjugal transfer cou 86.2 1.4 3E-05 40.2 5.0 21 78-101 225-245 (641)
199 TIGR02525 plasmid_TraJ plasmid 85.7 0.82 1.8E-05 38.9 3.2 15 79-93 151-165 (372)
200 PRK13889 conjugal transfer rel 85.3 2.8 6.2E-05 40.1 6.8 64 58-138 343-407 (988)
201 PRK10919 ATP-dependent DNA hel 85.2 1.2 2.6E-05 40.7 4.2 66 63-143 3-69 (672)
202 KOG1802|consensus 85.0 3.3 7.1E-05 38.1 6.7 40 54-93 402-441 (935)
203 KOG0947|consensus 84.9 1.4 3.1E-05 41.9 4.5 35 57-92 293-327 (1248)
204 PRK13880 conjugal transfer cou 84.9 1.9 4E-05 39.3 5.2 21 78-101 176-196 (636)
205 PF07652 Flavi_DEAD: Flaviviru 84.8 0.5 1.1E-05 35.1 1.3 49 81-144 8-56 (148)
206 TIGR02768 TraA_Ti Ti-type conj 84.3 3.7 8.1E-05 38.1 7.0 61 62-138 352-413 (744)
207 TIGR00631 uvrb excinuclease AB 84.3 1.8 3.9E-05 39.5 4.9 65 59-143 7-76 (655)
208 TIGR02524 dot_icm_DotB Dot/Icm 84.2 0.94 2E-05 38.3 2.9 18 76-93 133-150 (358)
209 PRK13833 conjugal transfer pro 83.9 1.6 3.5E-05 36.4 4.1 37 55-93 123-160 (323)
210 PRK12906 secA preprotein trans 83.7 1 2.3E-05 41.9 3.1 55 58-130 77-131 (796)
211 PRK13894 conjugal transfer ATP 83.7 1.6 3.4E-05 36.3 4.0 40 52-93 124-164 (319)
212 PRK10536 hypothetical protein; 83.6 1.3 2.8E-05 36.0 3.3 37 59-95 56-92 (262)
213 PF13871 Helicase_C_4: Helicas 83.6 8.8 0.00019 31.5 8.1 73 71-143 54-144 (278)
214 COG4962 CpaF Flp pilus assembl 83.3 1.4 3E-05 37.2 3.4 34 59-92 154-188 (355)
215 COG1203 CRISPR-associated heli 83.0 2.3 4.9E-05 39.3 5.1 68 64-143 197-268 (733)
216 KOG1803|consensus 82.9 3.6 7.8E-05 37.2 6.0 61 63-138 186-247 (649)
217 TIGR01075 uvrD DNA helicase II 82.8 1.7 3.6E-05 39.9 4.1 68 61-143 3-71 (715)
218 COG1219 ClpX ATP-dependent pro 82.6 0.57 1.2E-05 39.4 0.9 19 75-93 95-113 (408)
219 PRK11773 uvrD DNA-dependent he 82.6 1.7 3.8E-05 39.9 4.1 66 62-142 9-75 (721)
220 TIGR02782 TrbB_P P-type conjug 81.7 2.3 5.1E-05 34.9 4.2 38 54-93 110-148 (299)
221 TIGR02767 TraG-Ti Ti-type conj 81.3 2.9 6.3E-05 38.0 5.0 21 78-101 212-232 (623)
222 COG1201 Lhr Lhr-like helicases 81.2 5.1 0.00011 37.6 6.6 80 38-117 255-349 (814)
223 PRK13764 ATPase; Provisional 80.7 1.4 3.1E-05 39.8 2.8 19 75-93 255-273 (602)
224 CHL00122 secA preprotein trans 80.2 2.3 5E-05 40.0 4.1 65 58-141 73-137 (870)
225 PF01935 DUF87: Domain of unkn 79.9 1.2 2.5E-05 34.6 1.8 20 75-94 21-40 (229)
226 KOG4150|consensus 79.8 2.5 5.4E-05 38.4 3.9 35 93-127 604-638 (1034)
227 COG1205 Distinct helicase fami 79.6 1.3 2.9E-05 41.6 2.4 39 89-127 381-420 (851)
228 PRK13900 type IV secretion sys 79.5 1.2 2.6E-05 37.3 1.8 20 74-93 157-176 (332)
229 PRK13851 type IV secretion sys 79.4 1.1 2.3E-05 37.8 1.5 20 74-93 159-178 (344)
230 cd01130 VirB11-like_ATPase Typ 78.3 2.8 6.1E-05 31.6 3.4 31 63-93 10-41 (186)
231 PF05970 PIF1: PIF1-like helic 78.1 3.2 7E-05 34.9 4.0 31 63-93 2-38 (364)
232 PF05049 IIGP: Interferon-indu 77.8 3.7 8E-05 35.1 4.3 94 50-148 7-144 (376)
233 smart00382 AAA ATPases associa 77.7 1.1 2.4E-05 30.4 1.0 18 77-94 2-19 (148)
234 COG0630 VirB11 Type IV secreto 77.6 2.6 5.5E-05 35.0 3.2 34 60-93 125-159 (312)
235 PRK10436 hypothetical protein; 77.5 2.9 6.2E-05 36.7 3.6 15 79-93 220-234 (462)
236 PRK11131 ATP-dependent RNA hel 77.1 4.5 9.8E-05 39.8 5.1 61 68-143 79-144 (1294)
237 PRK12326 preprotein translocas 76.6 5.1 0.00011 37.2 5.1 65 58-141 75-139 (764)
238 COG2804 PulE Type II secretory 76.4 2.6 5.7E-05 37.2 3.1 36 55-93 237-274 (500)
239 KOG1132|consensus 76.3 3.6 7.8E-05 38.7 4.0 81 63-148 22-137 (945)
240 PRK09401 reverse gyrase; Revie 76.3 0.66 1.4E-05 45.1 -0.7 77 38-114 330-429 (1176)
241 TIGR01073 pcrA ATP-dependent D 76.1 4 8.6E-05 37.6 4.3 30 62-93 4-33 (726)
242 TIGR02640 gas_vesic_GvpN gas v 75.9 2.3 5E-05 34.1 2.5 25 69-93 13-37 (262)
243 PF12775 AAA_7: P-loop contain 75.2 1.1 2.4E-05 36.4 0.4 21 74-94 30-50 (272)
244 cd00009 AAA The AAA+ (ATPases 75.0 3.1 6.8E-05 28.5 2.7 17 77-93 19-35 (151)
245 PRK13876 conjugal transfer cou 74.7 1.8 3.9E-05 39.6 1.7 21 78-101 145-165 (663)
246 KOG0949|consensus 74.3 8.3 0.00018 37.1 5.8 70 59-143 509-578 (1330)
247 cd01363 Motor_domain Myosin an 73.6 3 6.6E-05 31.6 2.5 26 69-94 14-41 (186)
248 COG3973 Superfamily I DNA and 73.4 9.6 0.00021 34.8 5.8 90 44-146 186-285 (747)
249 TIGR02533 type_II_gspE general 73.3 4.3 9.4E-05 35.8 3.7 37 54-93 220-258 (486)
250 PRK13826 Dtr system oriT relax 72.8 13 0.00029 36.1 7.0 76 48-140 368-444 (1102)
251 TIGR03743 SXT_TraD conjugative 72.6 5 0.00011 36.6 4.0 19 76-94 175-193 (634)
252 PF00437 T2SE: Type II/IV secr 71.9 1.6 3.6E-05 34.7 0.7 19 75-93 125-143 (270)
253 TIGR03754 conj_TOL_TraD conjug 71.7 5.9 0.00013 36.2 4.2 57 76-147 179-236 (643)
254 PLN03187 meiotic recombination 71.6 8.3 0.00018 32.5 4.8 27 36-62 28-54 (344)
255 TIGR02538 type_IV_pilB type IV 71.4 4.4 9.5E-05 36.3 3.3 36 55-93 295-332 (564)
256 PF00448 SRP54: SRP54-type pro 70.5 3 6.5E-05 32.1 1.9 54 80-148 4-59 (196)
257 PLN03142 Probable chromatin-re 70.1 22 0.00047 34.5 7.8 93 38-130 489-600 (1033)
258 PRK05298 excinuclease ABC subu 70.0 8.4 0.00018 35.2 4.9 65 58-142 9-78 (652)
259 PRK09183 transposase/IS protei 69.5 5 0.00011 32.2 3.0 19 74-92 99-117 (259)
260 KOG0923|consensus 69.4 10 0.00022 35.1 5.1 40 78-130 281-320 (902)
261 TIGR01967 DEAH_box_HrpA ATP-de 69.2 14 0.0003 36.5 6.4 47 57-112 59-108 (1283)
262 KOG2373|consensus 69.1 2.1 4.6E-05 36.5 0.8 33 67-99 256-295 (514)
263 PF07517 SecA_DEAD: SecA DEAD- 68.8 8.5 0.00018 31.3 4.2 56 57-130 73-128 (266)
264 PRK05973 replicative DNA helic 68.8 2.1 4.5E-05 34.2 0.6 49 45-93 23-80 (237)
265 COG1111 MPH1 ERCC4-like helica 68.4 8.1 0.00018 34.3 4.2 50 78-142 30-79 (542)
266 cd01370 KISc_KIP3_like Kinesin 68.0 5 0.00011 33.5 2.8 25 71-95 80-106 (338)
267 cd01124 KaiC KaiC is a circadi 67.9 5.1 0.00011 29.6 2.6 16 80-95 2-17 (187)
268 cd01131 PilT Pilus retraction 67.9 2.5 5.4E-05 32.4 0.9 14 80-93 4-17 (198)
269 PRK11448 hsdR type I restricti 67.9 4.4 9.6E-05 39.4 2.7 26 93-118 777-802 (1123)
270 KOG1133|consensus 67.8 3.9 8.5E-05 37.6 2.2 34 62-95 15-52 (821)
271 COG1204 Superfamily II helicas 67.8 9.4 0.0002 35.7 4.8 31 99-129 376-408 (766)
272 PF12846 AAA_10: AAA-like doma 67.6 2 4.3E-05 34.0 0.3 16 78-93 2-17 (304)
273 cd01376 KISc_KID_like Kinesin 67.3 5.5 0.00012 32.9 2.9 25 71-95 73-99 (319)
274 cd01129 PulE-GspE PulE/GspE Th 67.2 6.1 0.00013 31.8 3.1 37 54-93 58-96 (264)
275 cd01365 KISc_KIF1A_KIF1B Kines 67.1 5.4 0.00012 33.5 2.8 25 71-95 81-107 (356)
276 PRK13700 conjugal transfer pro 67.1 3.1 6.7E-05 38.5 1.5 46 48-93 156-201 (732)
277 PRK06526 transposase; Provisio 66.8 3.3 7.1E-05 33.3 1.4 20 74-93 95-114 (254)
278 TIGR02788 VirB11 P-type DNA tr 66.7 3.2 6.9E-05 34.1 1.4 20 74-93 141-160 (308)
279 cd01373 KISc_KLP2_like Kinesin 65.9 6 0.00013 33.0 2.9 25 71-95 67-93 (337)
280 cd01368 KISc_KIF23_like Kinesi 65.9 5.6 0.00012 33.3 2.7 25 71-95 81-107 (345)
281 KOG1533|consensus 65.8 5 0.00011 32.5 2.3 13 80-92 5-17 (290)
282 PRK14701 reverse gyrase; Provi 65.8 1.4 3E-05 44.3 -1.1 76 48-123 346-450 (1638)
283 PF13671 AAA_33: AAA domain; P 65.6 3 6.6E-05 29.4 1.0 14 80-93 2-15 (143)
284 cd01367 KISc_KIF2_like Kinesin 65.1 5.5 0.00012 32.9 2.5 25 71-95 77-103 (322)
285 PF13207 AAA_17: AAA domain; P 65.0 3.2 7E-05 28.4 1.0 14 80-93 2-15 (121)
286 PRK14530 adenylate kinase; Pro 64.8 3.1 6.7E-05 32.1 0.9 18 75-92 1-18 (215)
287 PRK12902 secA preprotein trans 64.6 12 0.00025 35.7 4.7 55 58-130 82-136 (939)
288 PF00004 AAA: ATPase family as 64.4 2.5 5.5E-05 29.1 0.3 14 80-93 1-14 (132)
289 COG1202 Superfamily II helicas 64.4 26 0.00056 32.1 6.5 85 39-130 443-554 (830)
290 PF13401 AAA_22: AAA domain; P 64.2 3.3 7.1E-05 28.7 0.9 19 77-95 4-22 (131)
291 TIGR02688 conserved hypothetic 64.2 8.3 0.00018 33.7 3.5 37 55-92 180-224 (449)
292 PRK12723 flagellar biosynthesi 64.1 8.9 0.00019 32.9 3.6 60 78-148 175-236 (388)
293 COG1484 DnaC DNA replication p 63.7 4.9 0.00011 32.3 1.9 51 76-143 104-154 (254)
294 TIGR03819 heli_sec_ATPase heli 63.3 12 0.00026 31.4 4.2 39 52-92 154-193 (340)
295 PF13238 AAA_18: AAA domain; P 63.3 3.6 7.8E-05 28.1 1.0 14 80-93 1-14 (129)
296 PF05729 NACHT: NACHT domain 62.8 13 0.00028 26.4 3.9 15 80-94 3-17 (166)
297 cd01369 KISc_KHC_KIF5 Kinesin 62.7 6.8 0.00015 32.3 2.6 25 71-95 69-95 (325)
298 PRK08181 transposase; Validate 62.1 10 0.00022 30.8 3.4 19 74-92 103-121 (269)
299 TIGR02238 recomb_DMC1 meiotic 62.1 23 0.0005 29.4 5.6 25 70-94 84-113 (313)
300 PRK14729 miaA tRNA delta(2)-is 61.9 3.8 8.2E-05 33.9 1.0 14 80-93 7-20 (300)
301 cd01374 KISc_CENP_E Kinesin mo 61.4 7.6 0.00017 32.0 2.7 25 71-95 66-92 (321)
302 COG1182 AcpD Acyl carrier prot 60.6 36 0.00079 26.6 6.1 91 13-115 20-118 (202)
303 cd01364 KISc_BimC_Eg5 Kinesin 60.6 7.6 0.00016 32.5 2.6 25 71-95 74-100 (352)
304 cd00106 KISc Kinesin motor dom 60.6 11 0.00023 31.1 3.4 26 70-95 70-97 (328)
305 cd01375 KISc_KIF9_like Kinesin 59.5 8.3 0.00018 32.0 2.6 25 71-95 73-99 (334)
306 COG1643 HrpA HrpA-like helicas 59.2 20 0.00043 34.0 5.2 26 78-112 66-91 (845)
307 smart00129 KISc Kinesin motor, 59.1 12 0.00025 30.9 3.4 26 70-95 71-98 (335)
308 PF13654 AAA_32: AAA domain; P 59.0 3.1 6.8E-05 36.9 0.0 72 76-153 29-109 (509)
309 cd01372 KISc_KIF4 Kinesin moto 58.8 8.5 0.00018 31.9 2.6 25 71-95 66-92 (341)
310 PF07728 AAA_5: AAA domain (dy 58.1 4.4 9.5E-05 28.6 0.6 15 79-93 1-15 (139)
311 COG0714 MoxR-like ATPases [Gen 57.8 7.1 0.00015 32.2 1.9 24 70-93 36-59 (329)
312 COG4096 HsdR Type I site-speci 57.8 13 0.00028 35.0 3.7 65 63-141 166-235 (875)
313 PF01078 Mg_chelatase: Magnesi 57.7 7 0.00015 30.6 1.8 25 69-93 13-38 (206)
314 KOG0922|consensus 57.4 19 0.00041 33.0 4.5 30 75-113 64-93 (674)
315 PRK06921 hypothetical protein; 56.8 20 0.00043 28.9 4.3 17 76-92 116-132 (266)
316 cd01371 KISc_KIF3 Kinesin moto 56.6 9.7 0.00021 31.6 2.6 25 71-95 74-100 (333)
317 PF01580 FtsK_SpoIIIE: FtsK/Sp 56.6 4.7 0.0001 30.6 0.6 17 78-94 39-55 (205)
318 TIGR01420 pilT_fam pilus retra 56.6 5.2 0.00011 33.4 0.9 18 76-93 121-138 (343)
319 PF09439 SRPRB: Signal recogni 56.5 3.5 7.6E-05 31.6 -0.1 18 77-94 3-20 (181)
320 PF13555 AAA_29: P-loop contai 56.5 6.2 0.00013 24.8 1.1 18 76-93 22-39 (62)
321 KOG0745|consensus 56.5 5.7 0.00012 34.9 1.1 19 75-93 224-242 (564)
322 KOG0926|consensus 56.3 40 0.00086 32.2 6.5 42 79-129 273-314 (1172)
323 TIGR02760 TraI_TIGR conjugativ 56.2 39 0.00085 35.1 7.1 65 62-138 1019-1085(1960)
324 PF01695 IstB_IS21: IstB-like 56.1 5.5 0.00012 30.1 0.9 19 75-93 45-63 (178)
325 TIGR03877 thermo_KaiC_1 KaiC d 55.9 11 0.00025 29.5 2.7 19 76-94 20-38 (237)
326 cd01366 KISc_C_terminal Kinesi 55.9 11 0.00024 31.0 2.8 26 70-95 69-96 (329)
327 TIGR02562 cas3_yersinia CRISPR 55.7 20 0.00044 34.8 4.7 30 64-93 410-447 (1110)
328 PF09848 DUF2075: Uncharacteri 55.7 13 0.00027 31.1 3.1 50 80-143 4-53 (352)
329 KOG0950|consensus 55.7 36 0.00079 32.6 6.2 31 103-133 583-615 (1008)
330 COG0606 Predicted ATPase with 55.7 7.5 0.00016 34.3 1.8 24 70-93 190-214 (490)
331 PRK13709 conjugal transfer nic 55.6 25 0.00055 35.9 5.6 65 62-138 967-1033(1747)
332 COG4889 Predicted helicase [Ge 55.6 31 0.00068 33.3 5.7 55 35-93 135-196 (1518)
333 KOG0948|consensus 55.6 16 0.00034 34.4 3.8 54 70-129 478-539 (1041)
334 PRK12903 secA preprotein trans 54.8 23 0.00051 33.7 4.9 69 58-144 75-149 (925)
335 KOG0948|consensus 54.8 8.9 0.00019 35.9 2.1 30 63-92 130-159 (1041)
336 PF00225 Kinesin: Kinesin moto 54.5 8.1 0.00018 31.8 1.8 25 71-95 67-93 (335)
337 KOG0333|consensus 54.3 4.1 8.9E-05 36.5 -0.0 111 35-153 516-649 (673)
338 PLN03186 DNA repair protein RA 54.2 62 0.0013 27.2 7.0 25 38-62 27-51 (342)
339 PF14532 Sigma54_activ_2: Sigm 54.2 6.4 0.00014 28.0 1.0 21 73-93 17-37 (138)
340 smart00072 GuKc Guanylate kina 54.2 7 0.00015 29.3 1.2 52 77-129 2-57 (184)
341 PRK06835 DNA replication prote 54.1 18 0.00039 30.2 3.8 17 76-92 182-198 (329)
342 COG0467 RAD55 RecA-superfamily 53.9 13 0.00028 29.5 2.8 19 76-94 22-40 (260)
343 PRK10078 ribose 1,5-bisphospho 53.7 6.6 0.00014 29.5 1.0 18 76-93 1-18 (186)
344 TIGR03015 pepcterm_ATPase puta 53.6 8.8 0.00019 30.2 1.8 15 79-93 45-59 (269)
345 cd01122 GP4d_helicase GP4d_hel 53.3 1.2 2.7E-05 35.4 -3.2 20 74-93 27-46 (271)
346 PRK13531 regulatory ATPase Rav 53.2 19 0.00042 31.9 3.9 43 50-93 13-55 (498)
347 PRK00131 aroK shikimate kinase 53.0 6.2 0.00013 28.6 0.8 18 76-93 3-20 (175)
348 cd01127 TrwB Bacterial conjuga 53.0 4 8.6E-05 35.0 -0.3 47 48-94 12-59 (410)
349 PF00176 SNF2_N: SNF2 family N 52.9 14 0.0003 29.2 2.8 54 78-141 26-81 (299)
350 COG1197 Mfd Transcription-repa 52.7 50 0.0011 32.4 6.7 85 47-149 579-671 (1139)
351 COG1061 SSL2 DNA or RNA helica 52.7 14 0.00031 32.0 3.0 17 100-116 360-376 (442)
352 PTZ00035 Rad51 protein; Provis 52.6 47 0.001 27.8 6.0 25 70-94 106-135 (337)
353 PF10412 TrwB_AAD_bind: Type I 52.6 3.5 7.6E-05 35.1 -0.7 22 72-93 10-31 (386)
354 TIGR02760 TraI_TIGR conjugativ 52.5 30 0.00065 35.9 5.6 64 62-141 429-494 (1960)
355 KOG0330|consensus 52.5 20 0.00044 31.1 3.8 44 95-148 113-156 (476)
356 PF13191 AAA_16: AAA ATPase do 52.3 6.4 0.00014 28.8 0.8 17 77-93 24-40 (185)
357 PRK04301 radA DNA repair and r 52.1 14 0.00031 30.3 2.9 18 78-95 103-120 (317)
358 PRK12904 preprotein translocas 51.6 46 0.001 31.5 6.3 39 92-130 536-574 (830)
359 COG1474 CDC6 Cdc6-related prot 51.3 13 0.00028 31.6 2.5 16 78-93 43-58 (366)
360 PLN02165 adenylate isopentenyl 50.9 7.7 0.00017 32.6 1.1 18 76-93 42-59 (334)
361 PHA00729 NTP-binding motif con 50.8 8.6 0.00019 30.5 1.3 14 79-92 19-32 (226)
362 PRK13103 secA preprotein trans 50.6 30 0.00066 33.0 4.9 66 58-142 79-144 (913)
363 PHA02244 ATPase-like protein 50.5 15 0.00034 31.4 2.8 21 73-93 115-135 (383)
364 TIGR02784 addA_alphas double-s 50.5 21 0.00045 34.8 4.0 54 78-143 11-67 (1141)
365 PRK07261 topology modulation p 50.4 7.9 0.00017 28.9 1.0 14 80-93 3-16 (171)
366 TIGR03499 FlhF flagellar biosy 50.3 7.8 0.00017 31.5 1.0 19 77-95 194-212 (282)
367 TIGR02974 phageshock_pspF psp 50.3 22 0.00049 29.5 3.8 23 72-94 17-39 (329)
368 PRK00300 gmk guanylate kinase; 50.1 8.4 0.00018 29.1 1.1 17 76-92 4-20 (205)
369 KOG0242|consensus 50.0 14 0.00031 34.0 2.7 24 71-94 79-104 (675)
370 PF04665 Pox_A32: Poxvirus A32 49.7 8.3 0.00018 30.9 1.0 16 79-94 15-30 (241)
371 COG1419 FlhF Flagellar GTP-bin 49.4 38 0.00082 29.4 5.0 59 77-148 203-263 (407)
372 PRK08118 topology modulation p 49.0 8.6 0.00019 28.6 1.0 15 79-93 3-17 (167)
373 PRK06547 hypothetical protein; 48.9 15 0.00031 27.7 2.2 13 80-92 18-30 (172)
374 cd00071 GMPK Guanosine monopho 48.9 8.6 0.00019 27.6 0.9 13 80-92 2-14 (137)
375 TIGR03420 DnaA_homol_Hda DnaA 48.8 9.4 0.0002 29.2 1.2 18 76-93 37-54 (226)
376 PRK00091 miaA tRNA delta(2)-is 48.7 8.4 0.00018 31.9 1.0 15 79-93 6-20 (307)
377 PF08887 GAD-like: GAD-like do 48.6 49 0.0011 23.1 4.7 75 17-93 2-93 (109)
378 TIGR02928 orc1/cdc6 family rep 48.3 12 0.00027 30.8 1.9 17 78-94 41-57 (365)
379 TIGR02881 spore_V_K stage V sp 47.9 9.4 0.0002 30.4 1.1 17 77-93 42-58 (261)
380 COG0324 MiaA tRNA delta(2)-iso 47.9 9 0.00019 31.9 1.0 14 80-93 6-19 (308)
381 KOG1806|consensus 47.9 31 0.00067 33.5 4.5 83 60-157 736-818 (1320)
382 COG1074 RecB ATP-dependent exo 47.8 19 0.00041 35.2 3.3 61 74-144 13-76 (1139)
383 TIGR02880 cbbX_cfxQ probable R 47.8 9.1 0.0002 31.1 1.0 17 77-93 58-74 (284)
384 TIGR03263 guanyl_kin guanylate 47.8 9.1 0.0002 28.2 1.0 16 77-92 1-16 (180)
385 cd01876 YihA_EngB The YihA (En 47.7 9.6 0.00021 26.8 1.0 15 79-93 1-15 (170)
386 PRK11331 5-methylcytosine-spec 47.7 19 0.00042 31.6 3.0 26 68-93 185-210 (459)
387 COG0761 lytB 4-Hydroxy-3-methy 47.7 1E+02 0.0022 25.5 7.0 74 14-87 42-124 (294)
388 PRK11889 flhF flagellar biosyn 47.3 25 0.00053 30.7 3.6 18 78-95 242-259 (436)
389 COG1220 HslU ATP-dependent pro 47.2 9.7 0.00021 32.5 1.1 15 78-92 51-65 (444)
390 COG1224 TIP49 DNA helicase TIP 47.2 8.8 0.00019 33.0 0.8 19 75-93 63-81 (450)
391 PRK11608 pspF phage shock prot 47.1 32 0.00069 28.5 4.2 22 73-94 25-46 (326)
392 TIGR02759 TraD_Ftype type IV c 47.0 6.5 0.00014 35.3 0.1 44 48-93 146-192 (566)
393 cd01120 RecA-like_NTPases RecA 47.0 9.6 0.00021 26.8 0.9 14 80-93 2-15 (165)
394 TIGR00665 DnaB replicative DNA 46.5 24 0.00053 30.2 3.5 25 71-95 185-213 (434)
395 TIGR03878 thermo_KaiC_2 KaiC d 46.5 30 0.00065 27.6 3.8 18 76-93 35-52 (259)
396 KOG0924|consensus 46.4 60 0.0013 30.5 5.9 48 78-140 372-419 (1042)
397 PRK00411 cdc6 cell division co 46.3 8.6 0.00019 32.2 0.7 16 78-93 56-71 (394)
398 CHL00181 cbbX CbbX; Provisiona 46.1 10 0.00022 31.0 1.0 18 76-93 58-75 (287)
399 PF06068 TIP49: TIP49 C-termin 46.0 8.7 0.00019 33.0 0.6 19 75-93 48-66 (398)
400 PF06745 KaiC: KaiC; InterPro 45.9 9.5 0.00021 29.4 0.8 19 76-94 18-36 (226)
401 PF05872 DUF853: Bacterial pro 45.9 6.7 0.00015 34.5 -0.0 27 67-93 9-35 (502)
402 TIGR01313 therm_gnt_kin carboh 45.9 9.3 0.0002 27.8 0.7 13 80-92 1-13 (163)
403 KOG1805|consensus 45.8 43 0.00094 32.3 5.1 47 45-95 656-703 (1100)
404 PTZ00454 26S protease regulato 45.3 9.6 0.00021 32.7 0.8 54 37-93 139-195 (398)
405 PRK14722 flhF flagellar biosyn 44.7 11 0.00024 32.1 1.1 20 76-95 136-155 (374)
406 KOG0245|consensus 44.5 95 0.0021 30.3 7.1 70 70-142 79-157 (1221)
407 TIGR00041 DTMP_kinase thymidyl 44.3 9.6 0.00021 28.5 0.6 17 76-92 2-18 (195)
408 PRK05748 replicative DNA helic 44.0 33 0.00071 29.7 3.9 19 77-95 203-221 (448)
409 PF00005 ABC_tran: ABC transpo 43.6 11 0.00025 26.2 0.9 19 75-93 9-27 (137)
410 TIGR00174 miaA tRNA isopenteny 43.6 11 0.00025 30.9 1.0 14 80-93 2-15 (287)
411 TIGR02322 phosphon_PhnN phosph 43.6 11 0.00024 27.8 0.8 15 79-93 3-17 (179)
412 KOG0060|consensus 43.4 12 0.00025 34.0 1.1 20 74-93 458-477 (659)
413 PF00158 Sigma54_activat: Sigm 43.3 43 0.00094 25.0 4.0 41 75-129 20-60 (168)
414 PRK14532 adenylate kinase; Pro 43.3 12 0.00025 28.0 0.9 14 79-92 2-15 (188)
415 PLN03188 kinesin-12 family pro 42.9 17 0.00037 35.7 2.1 25 71-95 158-184 (1320)
416 PRK08233 hypothetical protein; 42.9 12 0.00026 27.4 0.9 13 80-92 6-18 (182)
417 COG1136 SalX ABC-type antimicr 42.8 12 0.00026 29.7 1.0 20 74-93 28-47 (226)
418 PF08477 Miro: Miro-like prote 42.6 13 0.00028 25.1 1.0 14 80-93 2-15 (119)
419 PRK12402 replication factor C 42.2 25 0.00054 28.5 2.8 14 79-92 38-51 (337)
420 PF14475 Mso1_Sec1_bdg: Sec1-b 42.1 29 0.00062 20.1 2.2 24 129-152 18-41 (41)
421 TIGR01360 aden_kin_iso1 adenyl 42.1 13 0.00028 27.4 1.0 14 80-93 6-19 (188)
422 PRK05703 flhF flagellar biosyn 42.0 33 0.00071 29.7 3.6 19 77-95 221-239 (424)
423 PRK12903 secA preprotein trans 41.8 42 0.00091 32.1 4.4 53 92-145 502-560 (925)
424 cd00227 CPT Chloramphenicol (C 41.8 13 0.00028 27.5 1.0 17 77-93 2-18 (175)
425 COG1660 Predicted P-loop-conta 41.7 63 0.0014 26.5 4.9 63 80-143 4-75 (286)
426 COG0556 UvrB Helicase subunit 41.4 46 0.001 30.1 4.4 79 44-129 455-557 (663)
427 KOG0240|consensus 41.4 29 0.00063 31.3 3.2 22 73-94 77-100 (607)
428 PRK08903 DnaA regulatory inact 41.3 14 0.00031 28.4 1.2 16 77-92 42-57 (227)
429 TIGR01650 PD_CobS cobaltochela 40.9 16 0.00034 30.7 1.4 20 74-93 61-80 (327)
430 PF07724 AAA_2: AAA domain (Cd 40.9 14 0.00029 27.8 1.0 14 79-92 5-18 (171)
431 TIGR01359 UMP_CMP_kin_fam UMP- 40.9 14 0.0003 27.3 1.0 13 80-92 2-14 (183)
432 cd02020 CMPK Cytidine monophos 40.7 14 0.0003 25.9 1.0 13 80-92 2-14 (147)
433 cd04164 trmE TrmE (MnmE, ThdF, 40.7 13 0.00029 25.9 0.9 17 77-93 1-17 (157)
434 PF03193 DUF258: Protein of un 40.6 49 0.0011 24.8 3.9 52 49-101 2-58 (161)
435 PF13481 AAA_25: AAA domain; P 40.6 16 0.00035 27.1 1.3 20 76-95 31-50 (193)
436 PRK06217 hypothetical protein; 40.5 14 0.0003 27.7 0.9 14 79-92 3-16 (183)
437 PRK05342 clpX ATP-dependent pr 40.5 11 0.00024 32.5 0.5 16 78-93 109-124 (412)
438 PF12340 DUF3638: Protein of u 40.3 1.8E+02 0.004 23.1 7.3 52 41-95 4-58 (229)
439 cd03115 SRP The signal recogni 40.0 28 0.00061 25.5 2.6 14 80-93 3-16 (173)
440 PF01745 IPT: Isopentenyl tran 39.9 14 0.00031 29.4 0.9 14 80-93 4-17 (233)
441 KOG0733|consensus 39.8 22 0.00047 32.8 2.2 88 38-126 506-610 (802)
442 PRK00771 signal recognition pa 39.8 35 0.00077 29.7 3.5 17 79-95 97-113 (437)
443 PRK08727 hypothetical protein; 39.8 14 0.00031 29.0 0.9 14 79-92 43-56 (233)
444 PLN02199 shikimate kinase 39.7 22 0.00047 29.6 2.0 22 71-92 96-117 (303)
445 PRK05541 adenylylsulfate kinas 39.3 15 0.00033 27.1 1.0 18 75-92 5-22 (176)
446 cd01428 ADK Adenylate kinase ( 39.3 15 0.00032 27.3 1.0 13 80-92 2-14 (194)
447 TIGR02239 recomb_RAD51 DNA rep 39.0 55 0.0012 27.1 4.4 25 70-94 84-113 (316)
448 PHA00547 hypothetical protein 39.0 19 0.00041 29.7 1.5 23 80-102 78-115 (337)
449 PRK13975 thymidylate kinase; P 38.8 15 0.00032 27.5 0.9 16 77-92 2-17 (196)
450 TIGR01817 nifA Nif-specific re 38.7 45 0.00098 29.5 4.1 22 74-95 216-237 (534)
451 PRK00698 tmk thymidylate kinas 38.6 13 0.00029 27.8 0.6 17 76-92 2-18 (205)
452 COG0610 Type I site-specific r 38.4 36 0.00079 32.7 3.6 54 78-145 274-327 (962)
453 PRK10867 signal recognition pa 38.3 32 0.00069 30.0 2.9 16 80-95 103-118 (433)
454 cd04163 Era Era subfamily. Er 38.3 16 0.00035 25.5 1.0 14 79-92 5-18 (168)
455 PRK08084 DNA replication initi 38.2 19 0.00042 28.2 1.5 16 77-92 45-60 (235)
456 PRK13974 thymidylate kinase; P 38.2 57 0.0012 25.0 4.1 58 76-142 2-59 (212)
457 cd01123 Rad51_DMC1_radA Rad51_ 38.0 28 0.00061 26.7 2.4 18 77-94 19-36 (235)
458 TIGR00382 clpX endopeptidase C 37.8 16 0.00034 31.7 1.0 16 78-93 117-132 (413)
459 PRK05595 replicative DNA helic 37.7 39 0.00085 29.2 3.4 25 71-95 191-219 (444)
460 PRK12726 flagellar biosynthesi 37.7 30 0.00065 30.0 2.6 19 76-94 205-223 (407)
461 KOG4150|consensus 37.6 40 0.00087 31.0 3.5 48 47-94 270-318 (1034)
462 PRK14531 adenylate kinase; Pro 37.6 17 0.00036 27.2 1.0 14 79-92 4-17 (183)
463 KOG0090|consensus 37.6 25 0.00054 28.0 2.0 19 77-95 38-56 (238)
464 cd00984 DnaB_C DnaB helicase C 37.5 14 0.0003 28.7 0.5 18 76-93 12-29 (242)
465 cd02019 NK Nucleoside/nucleoti 37.3 18 0.00038 22.6 1.0 14 80-93 2-15 (69)
466 cd02021 GntK Gluconate kinase 36.9 17 0.00037 25.9 0.9 13 80-92 2-14 (150)
467 PRK06762 hypothetical protein; 36.8 17 0.00037 26.4 0.9 14 79-92 4-17 (166)
468 TIGR01242 26Sp45 26S proteasom 36.7 17 0.00036 30.5 1.0 16 78-93 157-172 (364)
469 cd02023 UMPK Uridine monophosp 36.6 17 0.00037 27.3 0.9 13 80-92 2-14 (198)
470 cd00464 SK Shikimate kinase (S 36.5 19 0.00041 25.5 1.1 14 79-92 1-14 (154)
471 PRK00625 shikimate kinase; Pro 36.5 17 0.00037 27.3 0.9 14 79-92 2-15 (173)
472 KOG4280|consensus 36.3 33 0.0007 31.1 2.7 23 73-95 80-104 (574)
473 PF10662 PduV-EutP: Ethanolami 36.1 49 0.0011 24.3 3.2 14 79-92 3-16 (143)
474 PRK06904 replicative DNA helic 36.0 64 0.0014 28.4 4.5 19 77-95 221-239 (472)
475 COG2909 MalT ATP-dependent tra 35.7 1.2E+02 0.0026 29.0 6.3 17 79-95 39-55 (894)
476 PRK05201 hslU ATP-dependent pr 35.7 37 0.00079 29.8 2.9 15 78-92 51-65 (443)
477 PRK06893 DNA replication initi 35.6 18 0.0004 28.2 1.0 13 80-92 42-54 (229)
478 PTZ00361 26 proteosome regulat 35.6 17 0.00037 31.7 0.8 17 77-93 217-233 (438)
479 PRK07952 DNA replication prote 35.3 37 0.00081 27.1 2.7 16 78-93 100-115 (244)
480 COG1203 CRISPR-associated heli 35.2 29 0.00064 32.1 2.4 28 100-127 519-548 (733)
481 COG0210 UvrD Superfamily I DNA 35.1 33 0.00071 31.0 2.6 30 62-93 2-31 (655)
482 TIGR02236 recomb_radA DNA repa 35.0 45 0.00098 27.1 3.3 24 71-94 84-112 (310)
483 PRK14712 conjugal transfer nic 35.0 34 0.00073 34.8 2.8 32 62-93 835-868 (1623)
484 PF00485 PRK: Phosphoribulokin 34.8 19 0.00041 27.1 1.0 13 80-92 2-14 (194)
485 PRK09825 idnK D-gluconate kina 34.5 19 0.00041 27.0 0.8 17 76-92 2-18 (176)
486 cd02028 UMPK_like Uridine mono 34.4 20 0.00042 27.0 0.9 13 80-92 2-14 (179)
487 PRK05480 uridine/cytidine kina 34.3 20 0.00042 27.3 0.9 15 79-93 8-22 (209)
488 PRK06620 hypothetical protein; 34.3 19 0.00042 27.9 0.9 14 79-92 46-59 (214)
489 cd04159 Arl10_like Arl10-like 34.2 22 0.00047 24.7 1.1 15 79-93 1-15 (159)
490 TIGR03881 KaiC_arch_4 KaiC dom 34.2 20 0.00044 27.6 1.0 18 76-93 19-36 (229)
491 PLN02390 molybdopterin synthas 34.1 39 0.00085 23.7 2.4 45 106-151 57-101 (111)
492 PRK12377 putative replication 34.1 38 0.00082 27.1 2.6 15 78-92 102-116 (248)
493 TIGR00235 udk uridine kinase. 34.1 20 0.00043 27.4 0.9 15 78-92 7-21 (207)
494 TIGR02655 circ_KaiC circadian 34.0 30 0.00065 30.3 2.2 24 70-93 251-279 (484)
495 PRK04328 hypothetical protein; 33.9 39 0.00085 26.7 2.6 18 76-93 22-39 (249)
496 KOG0738|consensus 33.8 23 0.00051 30.8 1.4 16 78-93 246-261 (491)
497 PRK14974 cell division protein 33.6 48 0.001 27.8 3.2 55 79-148 142-198 (336)
498 KOG0243|consensus 33.6 32 0.00069 33.2 2.3 22 73-94 123-146 (1041)
499 PRK05057 aroK shikimate kinase 33.6 19 0.0004 26.9 0.7 15 78-92 5-19 (172)
500 COG0419 SbcC ATPase involved i 33.5 20 0.00043 34.0 1.0 13 80-92 28-40 (908)
No 1
>KOG0336|consensus
Probab=99.93 E-value=2.9e-26 Score=191.01 Aligned_cols=92 Identities=36% Similarity=0.615 Sum_probs=83.8
Q ss_pred CCCccCChHhhcCCHHHHHHHHhhcCcEEec-------CCCCCCcccccc-CCCcHHHHHHHHhCCCCCCchHHHHHHHH
Q psy7691 2 HNHAKTQERAARLSESEVEAFRQKKEITVKG-------NNIPCPTQELTE-GCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73 (165)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~p~~i~~f~~-l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~ 73 (165)
++||++....+++|+++++.+|+++...... ..+|.|.-+|++ ...++++.+++++.||.+|||||.+|||.
T Consensus 174 knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI 253 (629)
T KOG0336|consen 174 KNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPI 253 (629)
T ss_pred hhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccce
Confidence 7899999999999999999999776544332 458999999987 59999999999999999999999999999
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
++.|.|++++|+||+|||++
T Consensus 254 ~LQG~DliGVAQTgtgKtL~ 273 (629)
T KOG0336|consen 254 LLQGIDLIGVAQTGTGKTLA 273 (629)
T ss_pred eecCcceEEEEecCCCcCHH
Confidence 99999999999999999996
No 2
>PTZ00110 helicase; Provisional
Probab=99.93 E-value=3.3e-25 Score=194.33 Aligned_cols=92 Identities=54% Similarity=0.897 Sum_probs=88.2
Q ss_pred CCCccCChHhhcCCHHHHHHHHhhcCcEE-ecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCe
Q psy7691 2 HNHAKTQERAARLSESEVEAFRQKKEITV-KGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDM 80 (165)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di 80 (165)
++||.+++.+..+++++++.++..+.+.+ .|.++|.|+..|+++++++.++++|.++||..||++|.+|||.++.|+|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dv 170 (545)
T PTZ00110 91 KNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDM 170 (545)
T ss_pred hhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCE
Confidence 58999999999999999999999999887 68999999999999999999999999999999999999999999999999
Q ss_pred eeecccCCcccce
Q psy7691 81 VGIAQTGSGKTLA 93 (165)
Q Consensus 81 ~~~a~tgsGKt~~ 93 (165)
+++|+||||||++
T Consensus 171 I~~ApTGSGKTla 183 (545)
T PTZ00110 171 IGIAETGSGKTLA 183 (545)
T ss_pred EEEeCCCChHHHH
Confidence 9999999999973
No 3
>KOG0341|consensus
Probab=99.93 E-value=1.1e-25 Score=186.66 Aligned_cols=92 Identities=45% Similarity=0.702 Sum_probs=89.1
Q ss_pred CCCccCChHhhcCCHHHHHHHHhhcCcEEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCee
Q psy7691 2 HNHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMV 81 (165)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~ 81 (165)
+-.|+++.-+..+|+++-+..|+...|.+.|.++|+||.+|.++..|..+++.|++.|+..|||||.+.+|.++.|+|.+
T Consensus 132 ~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmI 211 (610)
T KOG0341|consen 132 KTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMI 211 (610)
T ss_pred hhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCcee
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCcccce
Q psy7691 82 GIAQTGSGKTLA 93 (165)
Q Consensus 82 ~~a~tgsGKt~~ 93 (165)
++|.||||||+.
T Consensus 212 GIAfTGSGKTlv 223 (610)
T KOG0341|consen 212 GIAFTGSGKTLV 223 (610)
T ss_pred eEEeecCCceEE
Confidence 999999999984
No 4
>KOG0333|consensus
Probab=99.88 E-value=7.6e-23 Score=174.40 Aligned_cols=84 Identities=40% Similarity=0.699 Sum_probs=80.4
Q ss_pred HhhcCCHHHHHHHHhhcCcEEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCc
Q psy7691 10 RAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSG 89 (165)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsG 89 (165)
.++++++.+|..|+++..+..+|..+|.|+.+|++.++|.++++.+...||..|||||++|||..+.-+|++++|.||||
T Consensus 215 ~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsG 294 (673)
T KOG0333|consen 215 VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSG 294 (673)
T ss_pred hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCC
Confidence 46677777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccce
Q psy7691 90 KTLA 93 (165)
Q Consensus 90 Kt~~ 93 (165)
||+|
T Consensus 295 ktaa 298 (673)
T KOG0333|consen 295 KTAA 298 (673)
T ss_pred cccc
Confidence 9976
No 5
>KOG0339|consensus
Probab=99.87 E-value=2.4e-22 Score=170.99 Aligned_cols=92 Identities=35% Similarity=0.570 Sum_probs=90.4
Q ss_pred CCCccCChHhhcCCHHHHHHHHhhcCcEEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCee
Q psy7691 2 HNHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMV 81 (165)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~ 81 (165)
++||-++++|..+++.++-.+|..+.+.+.|...|+|+.+|++.+.++.|..++++..|++||++|-+++|.+++|+|++
T Consensus 185 kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvi 264 (731)
T KOG0339|consen 185 KDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVI 264 (731)
T ss_pred cccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCcccce
Q psy7691 82 GIAQTGSGKTLA 93 (165)
Q Consensus 82 ~~a~tgsGKt~~ 93 (165)
++|.||||||.|
T Consensus 265 gIAktgSgktaA 276 (731)
T KOG0339|consen 265 GIAKTGSGKTAA 276 (731)
T ss_pred heeeccCcchhH
Confidence 999999999987
No 6
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.87 E-value=1.6e-21 Score=170.25 Aligned_cols=138 Identities=30% Similarity=0.406 Sum_probs=119.5
Q ss_pred CCCccCChHhhc-CCHHHHHHHHhhcCcEEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCe
Q psy7691 2 HNHAKTQERAAR-LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDM 80 (165)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di 80 (165)
++||-.+++... +++++++.+|++..+.+.|.+.|.|+..|+++++++.++++|.+.||..||++|.+|||.++.|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dv 161 (518)
T PLN00206 82 ECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSL 161 (518)
T ss_pred CcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCE
Confidence 467777777765 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCCcccceeeecCCCCChhHHHHhhccCC---CCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCC
Q psy7691 81 VGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTG---RCASSGTAYTFFTPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 81 ~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~---r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
+++|+||||||++|+ +| .+.++.... -....+..+++++|+ ++++.|+.+.+......+
T Consensus 162 iv~ApTGSGKTlayl---lP-----il~~l~~~~~~~~~~~~~~~aLIL~PT-reLa~Qi~~~~~~l~~~~ 223 (518)
T PLN00206 162 LVSADTGSGKTASFL---VP-----IISRCCTIRSGHPSEQRNPLAMVLTPT-RELCVQVEDQAKVLGKGL 223 (518)
T ss_pred EEEecCCCCccHHHH---HH-----HHHHHHhhccccccccCCceEEEEeCC-HHHHHHHHHHHHHHhCCC
Confidence 999999999999999 99 676653221 112357789999999 999999988877655443
No 7
>KOG0328|consensus
Probab=99.84 E-value=2.2e-20 Score=149.89 Aligned_cols=67 Identities=28% Similarity=0.466 Sum_probs=60.7
Q ss_pred CcEEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 27 EITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 27 ~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
....+.++.-.++.+|++++|.+++++.+...||.+|+.+|..|++.+++|+|++++|+.|+|||.+
T Consensus 14 ~~~feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~ 80 (400)
T KOG0328|consen 14 TVEFETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTAT 80 (400)
T ss_pred ceeEeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEE
Confidence 3444455666789999999999999999999999999999999999999999999999999999985
No 8
>KOG0334|consensus
Probab=99.83 E-value=1.7e-20 Score=169.63 Aligned_cols=137 Identities=34% Similarity=0.528 Sum_probs=123.0
Q ss_pred CCCccCChHhhcCCHHHHHHHHhhcC-cEEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCe
Q psy7691 2 HNHAKTQERAARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDM 80 (165)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di 80 (165)
|+||.+.+++..++.++|+.++.... +.+.|.+.|.|+.+|.+.++...++..++++||..|++||.+|||.++.|+|+
T Consensus 326 knfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdv 405 (997)
T KOG0334|consen 326 KNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDV 405 (997)
T ss_pred hcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcce
Confidence 68999999999999999999998887 99999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCCcccceeeecCCCCChhHHHHhh--ccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCC
Q psy7691 81 VGIAQTGSGKTLAVINFDYPNSSEDYIHRI--GRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 81 ~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~--gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
+++|.||||||++|+ || .+..+ -|+.-.|. |+-.+|++|+ ++++.||.+.+..-.+.+
T Consensus 406 IgvakTgSGKT~af~---LP-----mirhi~dQr~~~~gd-GPi~li~aPt-rela~QI~r~~~kf~k~l 465 (997)
T KOG0334|consen 406 IGVAKTGSGKTLAFL---LP-----MIRHIKDQRPLEEGD-GPIALILAPT-RELAMQIHREVRKFLKLL 465 (997)
T ss_pred EEeeccCCccchhhh---cc-----hhhhhhcCCChhhCC-CceEEEEcCC-HHHHHHHHHHHHHHHhhc
Confidence 999999999999999 89 33222 24444445 9999999999 999999999988765553
No 9
>KOG0330|consensus
Probab=99.82 E-value=3.5e-20 Score=153.59 Aligned_cols=56 Identities=38% Similarity=0.625 Sum_probs=53.9
Q ss_pred CccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
...+|.+|++.+++.++++..||..||+||.++||.++.|+|+++.|.||||||.+
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~a 114 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGA 114 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhh
Confidence 45689999999999999999999999999999999999999999999999999997
No 10
>KOG0335|consensus
Probab=99.82 E-value=1.7e-20 Score=159.70 Aligned_cols=68 Identities=35% Similarity=0.578 Sum_probs=63.6
Q ss_pred cCcEEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 26 KEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 26 ~~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
..+.+.|.++|.++..|++..+++.+..+++..||..|||+|+.+||.+..|+|++++|+||||||.|
T Consensus 60 i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~a 127 (482)
T KOG0335|consen 60 IPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAA 127 (482)
T ss_pred eeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHH
Confidence 34556688999999999999999999999999999999999999999999999999999999999997
No 11
>KOG0331|consensus
Probab=99.79 E-value=7.8e-20 Score=157.57 Aligned_cols=138 Identities=42% Similarity=0.679 Sum_probs=117.0
Q ss_pred CCCccCChHhhcCCHHHHHHHHhhcCcEEecCC-CCCCccccccCC-----------------------------CcHHH
Q psy7691 2 HNHAKTQERAARLSESEVEAFRQKKEITVKGNN-IPCPTQELTEGC-----------------------------FPNAV 51 (165)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~p~~i~~f~~l~-----------------------------l~~~l 51 (165)
+++|++++........+.+..+.++.+.+.+.+ +|.|+..|+... +++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ls~~~ 102 (519)
T KOG0331|consen 23 KNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQELGLSEEL 102 (519)
T ss_pred ccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhcccccHHH
Confidence 578899999999999999999999999999876 888887776543 44556
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhcc-CCCCC-CCCceEEEECCC
Q psy7691 52 LQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGR-TGRCA-SSGTAYTFFTPN 129 (165)
Q Consensus 52 ~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr-~~r~~-~~g~~~~~~~p~ 129 (165)
.++++..||..|||||.++||.++.|+|++++|.||||||++|+ +| +++++-. .+..+ ..++.+++++|+
T Consensus 103 ~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~---lP-----~i~~l~~~~~~~~~~~~P~vLVL~PT 174 (519)
T KOG0331|consen 103 MKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYL---LP-----AIVHLNNEQGKLSRGDGPIVLVLAPT 174 (519)
T ss_pred HHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhh---hH-----HHHHHHhccccccCCCCCeEEEEcCc
Confidence 66677999999999999999999999999999999999999999 99 7777754 23333 468899999999
Q ss_pred cHHHHHHHHHHHHhcCCCC
Q psy7691 130 NGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 130 ~~~~~~~i~~~l~~~~~~~ 148 (165)
|+++.||.+.+.+....+
T Consensus 175 -RELA~QV~~~~~~~~~~~ 192 (519)
T KOG0331|consen 175 -RELAVQVQAEAREFGKSL 192 (519)
T ss_pred -HHHHHHHHHHHHHHcCCC
Confidence 999999999988865554
No 12
>KOG0326|consensus
Probab=99.71 E-value=5.6e-18 Score=138.02 Aligned_cols=60 Identities=37% Similarity=0.666 Sum_probs=56.6
Q ss_pred eeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChHHH
Q psy7691 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153 (165)
Q Consensus 94 ~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~~~ 153 (165)
|+|||.|...++|+||+||+||.|..|.++.+++-.++..+.+|++-+....+++|+.++
T Consensus 394 VINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 394 VINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred EEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 679999999999999999999999999999999999999999999999999999996543
No 13
>KOG0340|consensus
Probab=99.68 E-value=1e-16 Score=131.86 Aligned_cols=98 Identities=28% Similarity=0.421 Sum_probs=90.6
Q ss_pred ccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCC
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCAS 118 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~ 118 (165)
...|+.|++++++.+.|+.+|+..|||+|..|||.++.|+|++++|.||||||.+|. +| .++|..-. .
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFa---LP-----il~rLsed----P 73 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFA---LP-----ILNRLSED----P 73 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhh---HH-----HHHhhccC----C
Confidence 458999999999999999999999999999999999999999999999999999998 99 99998764 6
Q ss_pred CCceEEEECCCcHHHHHHHHHHHHhcCCCCC
Q psy7691 119 SGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149 (165)
Q Consensus 119 ~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p 149 (165)
.|.-.++++|+ ++++.|+.+.+...++.+.
T Consensus 74 ~giFalvlTPT-rELA~QiaEQF~alGk~l~ 103 (442)
T KOG0340|consen 74 YGIFALVLTPT-RELALQIAEQFIALGKLLN 103 (442)
T ss_pred CcceEEEecch-HHHHHHHHHHHHHhccccc
Confidence 78889999999 9999999999988877753
No 14
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.2e-16 Score=139.52 Aligned_cols=98 Identities=33% Similarity=0.511 Sum_probs=86.0
Q ss_pred cccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCC
Q psy7691 40 QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASS 119 (165)
Q Consensus 40 ~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~ 119 (165)
..|+++++.+.++++|.++||..||+||.++||.++.|+|++++|+||||||+||. +| .++++.+... ..
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~---lP-----~l~~l~~~~~--~~ 98 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFL---LP-----LLQKILKSVE--RK 98 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH---HH-----HHHHHhcccc--cC
Confidence 78999999999999999999999999999999999999999999999999999999 99 8888865311 11
Q ss_pred CceEEEECCCcHHHHHHHHHHHHhcCCCC
Q psy7691 120 GTAYTFFTPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 120 g~~~~~~~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
...+++++|+ |+++.||.+.+.......
T Consensus 99 ~~~aLil~PT-RELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 99 YVSALILAPT-RELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCceEEECCC-HHHHHHHHHHHHHHHhhc
Confidence 1128899999 899999999998877655
No 15
>KOG0343|consensus
Probab=99.66 E-value=1.1e-16 Score=137.79 Aligned_cols=123 Identities=28% Similarity=0.396 Sum_probs=107.1
Q ss_pred hhcCCHHHHHHHHhhcCcEEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcc
Q psy7691 11 AARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGK 90 (165)
Q Consensus 11 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGK 90 (165)
+....+++++.+..+..... ...+..|+++.+....++.|++.+|..+|.+|..+||.++.|.||++.|.|||||
T Consensus 45 ~~~~Eee~i~~l~~ky~ei~-----~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGK 119 (758)
T KOG0343|consen 45 LRQQEEEEIEELKQKYAEID-----STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGK 119 (758)
T ss_pred hhhhhHHHHHHHHHHHHHhh-----hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCc
Confidence 34455667777766554222 2347799999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCC
Q psy7691 91 TLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQP 147 (165)
Q Consensus 91 t~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~ 147 (165)
|+||+ +| .++++-|.++.+..|..+++++|+ |+++.|+...+...+..
T Consensus 120 TLAFl---vP-----vlE~L~r~kWs~~DGlGalIISPT-RELA~QtFevL~kvgk~ 167 (758)
T KOG0343|consen 120 TLAFL---VP-----VLEALYRLKWSPTDGLGALIISPT-RELALQTFEVLNKVGKH 167 (758)
T ss_pred eeeeh---HH-----HHHHHHHcCCCCCCCceeEEecch-HHHHHHHHHHHHHHhhc
Confidence 99999 99 899999998989999999999999 99999999999886543
No 16
>KOG0346|consensus
Probab=99.64 E-value=1e-16 Score=134.86 Aligned_cols=104 Identities=28% Similarity=0.478 Sum_probs=90.3
Q ss_pred cccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhc---cCCCC
Q psy7691 40 QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIG---RTGRC 116 (165)
Q Consensus 40 ~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~g---r~~r~ 116 (165)
..|++++|++.+++++.+.||..||-+|..|||.++.|.|+++.|.||||||+||+ +| .++.+- .++ .
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYl---iP-----llqkll~~k~t~-~ 89 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYL---IP-----LLQKLLAEKKTN-D 89 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHH---HH-----HHHHHHHhhhcc-c
Confidence 68999999999999999999999999999999999999999999999999999999 99 666542 233 6
Q ss_pred CCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChHHH
Q psy7691 117 ASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153 (165)
Q Consensus 117 ~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~~~ 153 (165)
+..|+..+++.|+ ++++.|+.+.+++...-.+.++.
T Consensus 90 ~e~~~sa~iLvPT-kEL~qQvy~viekL~~~c~k~lr 125 (569)
T KOG0346|consen 90 GEQGPSAVILVPT-KELAQQVYKVIEKLVEYCSKDLR 125 (569)
T ss_pred ccccceeEEEech-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 7889999999999 99999999888876555544443
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.64 E-value=5.7e-16 Score=131.98 Aligned_cols=98 Identities=28% Similarity=0.387 Sum_probs=83.2
Q ss_pred ccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCC---
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGR--- 115 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r--- 115 (165)
...|+++++++.++++|.++||..||++|.+|||.++.|.|++++|+||||||++|+ +| .++++-....
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~l---lp-----~l~~l~~~~~~~~ 78 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFL---TA-----TFHYLLSHPAPED 78 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHH---HH-----HHHHHHhcccccc
Confidence 468999999999999999999999999999999999999999999999999999998 89 6776643211
Q ss_pred CCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 116 CASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 116 ~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
....+..+++++|+ ++++.|+.+.+....
T Consensus 79 ~~~~~~~~lil~Pt-reLa~Qi~~~~~~l~ 107 (423)
T PRK04837 79 RKVNQPRALIMAPT-RELAVQIHADAEPLA 107 (423)
T ss_pred cccCCceEEEECCc-HHHHHHHHHHHHHHh
Confidence 11346789999999 999999887766543
No 18
>KOG0344|consensus
Probab=99.64 E-value=5.4e-16 Score=133.90 Aligned_cols=128 Identities=27% Similarity=0.438 Sum_probs=108.8
Q ss_pred HHHHHhhcCcEEecCCCCCCccccccC----CCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCccccee
Q psy7691 19 VEAFRQKKEITVKGNNIPCPTQELTEG----CFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 19 ~~~~~~~~~i~~~~~~~p~~i~~f~~l----~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~ 94 (165)
....|+.+++.+.|.++|.|+..|+.+ .++..+++++...+|..||++|++|+|.++.++|+++|+|||||||++|
T Consensus 111 ~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 111 LLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAF 190 (593)
T ss_pred cccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhh
Confidence 335567789999999999999999984 7999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCChhHHHHhhccCC-CCCCCCceEEEECCCcHHHHHHHHHHHHhcC--CCCChHHHHH
Q psy7691 95 INFDYPNSSEDYIHRIGRTG-RCASSGTAYTFFTPNNGKQAKELIAVLTEAS--QPIPPQLQDL 155 (165)
Q Consensus 95 ~~~~lP~~~~~~i~r~gr~~-r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~--~~~p~~~~~~ 155 (165)
. +| .++++--.. +.+..|...+++.|+ ++++.|+.+-+.... ...+.....+
T Consensus 191 ~---~P-----il~~L~~~~~~~~~~gl~a~Il~pt-reLa~Qi~re~~k~~~~~~t~~~a~~~ 245 (593)
T KOG0344|consen 191 N---LP-----ILQHLKDLSQEKHKVGLRALILSPT-RELAAQIYREMRKYSIDEGTSLRAAQF 245 (593)
T ss_pred h---hH-----HHHHHHHhhcccCccceEEEEecch-HHHHHHHHHHHHhcCCCCCCchhhhhc
Confidence 9 99 666663322 566788899999999 999999999998887 4444443333
No 19
>KOG0332|consensus
Probab=99.62 E-value=1.3e-15 Score=126.15 Aligned_cols=56 Identities=27% Similarity=0.489 Sum_probs=53.1
Q ss_pred CccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcC--CCeeeecccCCcccce
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G--~di~~~a~tgsGKt~~ 93 (165)
.+.+|++|+|.+++++.|..++|..|+.||..|+|.++.- +++++++..|+|||.|
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaa 145 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAA 145 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHH
Confidence 4788999999999999999999999999999999999887 7899999999999986
No 20
>KOG0338|consensus
Probab=99.60 E-value=6.1e-16 Score=132.22 Aligned_cols=96 Identities=27% Similarity=0.435 Sum_probs=83.8
Q ss_pred ccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhc-cCCCCC
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIG-RTGRCA 117 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~g-r~~r~~ 117 (165)
..+|.+|+|+..+++++..+||..|||||..+||.++.|+||+++|.||||||.||. +| .+.|+- |+.+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~---lP-----iLERLlYrPk~-- 249 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFA---LP-----ILERLLYRPKK-- 249 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhH---HH-----HHHHHhcCccc--
Confidence 458999999999999999999999999999999999999999999999999999999 99 888763 4322
Q ss_pred CCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 118 SSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 118 ~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
.....+++++|+ |+++-|+.....+..
T Consensus 250 ~~~TRVLVL~PT-RELaiQv~sV~~qla 276 (691)
T KOG0338|consen 250 VAATRVLVLVPT-RELAIQVHSVTKQLA 276 (691)
T ss_pred CcceeEEEEecc-HHHHHHHHHHHHHHH
Confidence 345578999999 999988887776643
No 21
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.59 E-value=3e-15 Score=128.89 Aligned_cols=96 Identities=27% Similarity=0.402 Sum_probs=82.2
Q ss_pred ccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCC--CCC
Q psy7691 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGR--CAS 118 (165)
Q Consensus 41 ~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r--~~~ 118 (165)
+|+++++++.++++|.++||..||++|.+|+|.++.|+|++++|+||||||++|+ +| .++++..... .+.
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~---lp-----il~~l~~~~~~~~~~ 73 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFT---LP-----LLQHLITRQPHAKGR 73 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH---HH-----HHHHhhhcccccccC
Confidence 6999999999999999999999999999999999999999999999999999999 99 7777643211 123
Q ss_pred CCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 119 SGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 119 ~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
.+..+++++|+ ++++.|+.+.+....
T Consensus 74 ~~~~aLil~Pt-reLa~Qi~~~~~~~~ 99 (456)
T PRK10590 74 RPVRALILTPT-RELAAQIGENVRDYS 99 (456)
T ss_pred CCceEEEEeCc-HHHHHHHHHHHHHHh
Confidence 34578999999 999999988877643
No 22
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.59 E-value=4.3e-15 Score=131.31 Aligned_cols=99 Identities=27% Similarity=0.339 Sum_probs=83.4
Q ss_pred ccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCC---
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGR--- 115 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r--- 115 (165)
...|++++|++.++++|.+.||..||++|.++||.++.|.|++++|+||||||++|+ +| .++++-....
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafl---lp-----il~~l~~~~~~~~ 79 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFL---VA-----VMNRLLSRPALAD 79 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHH---HH-----HHHHHHhcccccc
Confidence 357999999999999999999999999999999999999999999999999999999 89 7777632111
Q ss_pred CCCCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 116 CASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 116 ~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
....+..++|++|+ ++++.|+.+.+.....
T Consensus 80 ~~~~~~raLIl~PT-reLa~Qi~~~~~~l~~ 109 (572)
T PRK04537 80 RKPEDPRALILAPT-RELAIQIHKDAVKFGA 109 (572)
T ss_pred cccCCceEEEEeCc-HHHHHHHHHHHHHHhc
Confidence 11235689999999 9999999887766543
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.58 E-value=4.1e-15 Score=126.98 Aligned_cols=95 Identities=33% Similarity=0.478 Sum_probs=80.7
Q ss_pred ccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCC
Q psy7691 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSG 120 (165)
Q Consensus 41 ~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g 120 (165)
.|+++++++.+++.|.++||..||++|.++++.++.|.|++++|+||+|||++|+ +| .++++-...+....+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~---lp-----~l~~l~~~~~~~~~~ 73 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFL---LP-----ALQHLLDFPRRKSGP 73 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH---HH-----HHHHHhhccccCCCC
Confidence 6999999999999999999999999999999999999999999999999999998 88 676664322222234
Q ss_pred ceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 121 TAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 121 ~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
..+++++|+ ++++.|+.+.+...
T Consensus 74 ~~~lil~Pt-~eLa~Q~~~~~~~l 96 (434)
T PRK11192 74 PRILILTPT-RELAMQVADQAREL 96 (434)
T ss_pred ceEEEECCc-HHHHHHHHHHHHHH
Confidence 578999998 89999888776654
No 24
>KOG0331|consensus
Probab=99.58 E-value=9.4e-15 Score=126.31 Aligned_cols=116 Identities=38% Similarity=0.615 Sum_probs=99.4
Q ss_pred CCCccccc-cCCCcHHHHHHHHhCCCCCC------chHHHH---------------HHHHHHcCCCeeeecccCCcccce
Q psy7691 36 PCPTQELT-EGCFPNAVLQHLKGQGFEEP------TAIQAQ---------------GWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 36 p~~i~~f~-~l~l~~~l~~~l~~~g~~~~------t~~Q~~---------------a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
+..++.|. ....++++.+++...||... +..|+. |++.+.||.||..+. +
T Consensus 341 ~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~--------l 412 (519)
T KOG0331|consen 341 EGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD--------L 412 (519)
T ss_pred CCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc--------E
Confidence 34455665 56899999999999886542 222322 788888999999888 9
Q ss_pred eeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChHHHHHhhhC
Q psy7691 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQDLANSN 159 (165)
Q Consensus 94 ~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~~~~~~~~~ 159 (165)
|||||+|.++++|+||+|||||+|.+|.+++++++.+..++..+.+.++..++.+|+.+..++...
T Consensus 413 VInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~ 478 (519)
T KOG0331|consen 413 VINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVS 478 (519)
T ss_pred EEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999986654
No 25
>KOG0327|consensus
Probab=99.57 E-value=3.4e-15 Score=123.67 Aligned_cols=62 Identities=35% Similarity=0.701 Sum_probs=57.6
Q ss_pred eeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChHHHHH
Q psy7691 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQDL 155 (165)
Q Consensus 94 ~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~~~~~ 155 (165)
++|||+|...++|+||+||+||.|++|.++.+++-.+...+..+.++..-...++|....++
T Consensus 335 vinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l 396 (397)
T KOG0327|consen 335 VVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADL 396 (397)
T ss_pred eeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhc
Confidence 57999999999999999999999999999999999999999999999999999999877654
No 26
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.56 E-value=7.9e-15 Score=126.18 Aligned_cols=92 Identities=27% Similarity=0.392 Sum_probs=81.0
Q ss_pred cccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCC
Q psy7691 40 QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASS 119 (165)
Q Consensus 40 ~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~ 119 (165)
.+|+++++++.++++|.+.||..||++|.+|+|.++.|.|++++|+||||||++|. +| .++++... ..
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~---lp-----il~~l~~~----~~ 71 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFG---LG-----LLQKLDVK----RF 71 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHH---HH-----HHHHhhhc----cC
Confidence 47999999999999999999999999999999999999999999999999999998 89 78877421 23
Q ss_pred CceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 120 GTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 120 g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
+..+++++|+ ++++.|+.+.++..
T Consensus 72 ~~~~lil~Pt-reLa~Q~~~~~~~~ 95 (460)
T PRK11776 72 RVQALVLCPT-RELADQVAKEIRRL 95 (460)
T ss_pred CceEEEEeCC-HHHHHHHHHHHHHH
Confidence 4567889998 89999998877654
No 27
>KOG0348|consensus
Probab=99.56 E-value=7.7e-15 Score=126.09 Aligned_cols=103 Identities=26% Similarity=0.386 Sum_probs=89.5
Q ss_pred CccccccCCCcHHHHHHHHh-CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccC--C
Q psy7691 38 PTQELTEGCFPNAVLQHLKG-QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRT--G 114 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~-~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~--~ 114 (165)
....|.+++|++.++..|+. +++..||.+|.+|||.++.|+|+++.++||||||+||+ +| ++|++-+- .
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYl---lP-----iVq~Lq~m~~k 205 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYL---LP-----IVQSLQAMEPK 205 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHH---HH-----HHHHHHhcCcc
Confidence 45679999999999999988 79999999999999999999999999999999999999 99 77766431 1
Q ss_pred CCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCC
Q psy7691 115 RCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149 (165)
Q Consensus 115 r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p 149 (165)
-....|+-.+++.|+ |+++.|+...++....+..
T Consensus 206 i~Rs~G~~ALVivPT-REL~~Q~y~~~qKLl~~~h 239 (708)
T KOG0348|consen 206 IQRSDGPYALVIVPT-RELALQIYETVQKLLKPFH 239 (708)
T ss_pred ccccCCceEEEEech-HHHHHHHHHHHHHHhcCce
Confidence 222578889999999 9999999999999887753
No 28
>KOG0345|consensus
Probab=99.56 E-value=9e-15 Score=123.98 Aligned_cols=97 Identities=29% Similarity=0.400 Sum_probs=79.9
Q ss_pred cccccCC--CcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCC
Q psy7691 40 QELTEGC--FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCA 117 (165)
Q Consensus 40 ~~f~~l~--l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~ 117 (165)
..|++++ |.+++++++...||..+||+|..|||.++.+.|+++-|+||||||+||+ +| ++.-+-|..-..
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFl---lP-----~le~i~rr~~~~ 75 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFL---LP-----MLEIIYRREAKT 75 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHH---HH-----HHHHHHhhccCC
Confidence 3678775 4599999999999999999999999999999999999999999999999 99 666663322222
Q ss_pred CCC-ceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 118 SSG-TAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 118 ~~g-~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
..+ ...++++|+ |+++.||.+.+..-.
T Consensus 76 ~~~~vgalIIsPT-RELa~QI~~V~~~F~ 103 (567)
T KOG0345|consen 76 PPGQVGALIISPT-RELARQIREVAQPFL 103 (567)
T ss_pred CccceeEEEecCc-HHHHHHHHHHHHHHH
Confidence 333 568888888 999999998776543
No 29
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.53 E-value=1.6e-14 Score=128.87 Aligned_cols=93 Identities=30% Similarity=0.516 Sum_probs=81.7
Q ss_pred ccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCC
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCAS 118 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~ 118 (165)
...|++++|++.++++|.++||..||++|.++||.++.|.|++++|+||||||++|. +| .++++... .
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~---lp-----ll~~l~~~----~ 72 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS---LP-----LLHNLDPE----L 72 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHH---HH-----HHHHhhhc----c
Confidence 457999999999999999999999999999999999999999999999999999998 89 77777432 2
Q ss_pred CCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 119 SGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 119 ~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
.+..+++++|+ ++++.|+.+.+...
T Consensus 73 ~~~~~LIL~PT-reLa~Qv~~~l~~~ 97 (629)
T PRK11634 73 KAPQILVLAPT-RELAVQVAEAMTDF 97 (629)
T ss_pred CCCeEEEEeCc-HHHHHHHHHHHHHH
Confidence 44678999999 89999988776654
No 30
>KOG0342|consensus
Probab=99.52 E-value=1.7e-14 Score=122.63 Aligned_cols=100 Identities=30% Similarity=0.443 Sum_probs=85.8
Q ss_pred CccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCC
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCA 117 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~ 117 (165)
+...|++..|++..+++++++||..+|++|..+++.++.|+|+++.|.||||||+||+ +| -++-+-...-..
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFL---iP-----aie~l~k~~~~~ 151 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFL---LP-----AIELLRKLKFKP 151 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeeh---hH-----HHHHHHhcccCC
Confidence 3567888999999999999999999999999999999999999999999999999999 99 444443333444
Q ss_pred CCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 118 SSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 118 ~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
+.+..+++++|+ |+++.|+...++....
T Consensus 152 r~~~~vlIi~PT-RELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 152 RNGTGVLIICPT-RELAMQIFAEAKELLK 179 (543)
T ss_pred CCCeeEEEeccc-HHHHHHHHHHHHHHHh
Confidence 588899999999 9999999887776543
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.50 E-value=7.8e-14 Score=120.60 Aligned_cols=101 Identities=22% Similarity=0.256 Sum_probs=84.3
Q ss_pred CccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCC-
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRC- 116 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~- 116 (165)
....|..+++++.++++|.+.||..+|++|.+||+.++.|.|++++++||||||++|+ +| .++++......
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~---lp-----il~~l~~~~~~~ 156 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFL---IS-----IINQLLQTPPPK 156 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH---HH-----HHHHHHhcCccc
Confidence 3568999999999999999999999999999999999999999999999999999998 89 77776442111
Q ss_pred --CCCCceEEEECCCcHHHHHHHHHHHHhcCCC
Q psy7691 117 --ASSGTAYTFFTPNNGKQAKELIAVLTEASQP 147 (165)
Q Consensus 117 --~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~ 147 (165)
...+..++++.|+ ++++.|+.+.+......
T Consensus 157 ~~~~~~~~aLil~Pt-reLa~Q~~~~~~~l~~~ 188 (475)
T PRK01297 157 ERYMGEPRALIIAPT-RELVVQIAKDAAALTKY 188 (475)
T ss_pred ccccCCceEEEEeCc-HHHHHHHHHHHHHhhcc
Confidence 0124578889998 99999998888765443
No 32
>KOG0347|consensus
Probab=99.50 E-value=3.7e-14 Score=122.30 Aligned_cols=102 Identities=28% Similarity=0.403 Sum_probs=85.3
Q ss_pred CCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcC-CCeeeecccCCcccceeeecCCCCChhHHHHhhccCC
Q psy7691 36 PCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTG 114 (165)
Q Consensus 36 p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~ 114 (165)
+.-+..|.++.++.+++++|..+||..||+||..++|++.+| .||++.|.||||||+||- +| .++|.--++
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFG---IP-----iv~~l~~~s 248 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFG---IP-----IVERLLESS 248 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeec---ch-----hhhhhhhcc
Confidence 334788999999999999999999999999999999999999 899999999999999999 99 677543332
Q ss_pred CCC-------CCC--ceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 115 RCA-------SSG--TAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 115 r~~-------~~g--~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
-+. ..+ +..++++|+ |+++-|+.+.+.....
T Consensus 249 ~~s~e~~~~~~k~~k~~~LV~tPT-RELa~QV~~Hl~ai~~ 288 (731)
T KOG0347|consen 249 DDSQELSNTSAKYVKPIALVVTPT-RELAHQVKQHLKAIAE 288 (731)
T ss_pred chHhhhhhHHhccCcceeEEecCh-HHHHHHHHHHHHHhcc
Confidence 211 122 247888888 9999999999988755
No 33
>PTZ00424 helicase 45; Provisional
Probab=99.46 E-value=2.2e-13 Score=114.78 Aligned_cols=95 Identities=24% Similarity=0.372 Sum_probs=82.1
Q ss_pred CccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCC
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCA 117 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~ 117 (165)
....|+++++++.+.++|.+.||..|+++|.+|++.++.|.|++++|+||||||++|+ +| .++.+.. .
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~---l~-----~l~~~~~----~ 93 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFV---IA-----ALQLIDY----D 93 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH---HH-----HHHHhcC----C
Confidence 4678999999999999999999999999999999999999999999999999999988 78 5665532 1
Q ss_pred CCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 118 SSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 118 ~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
..+..++++.|+ ++++.|+.+.+....
T Consensus 94 ~~~~~~lil~Pt-~~L~~Q~~~~~~~~~ 120 (401)
T PTZ00424 94 LNACQALILAPT-RELAQQIQKVVLALG 120 (401)
T ss_pred CCCceEEEECCC-HHHHHHHHHHHHHHh
Confidence 345578899999 899999988776654
No 34
>KOG4284|consensus
Probab=99.44 E-value=3.3e-13 Score=118.34 Aligned_cols=61 Identities=31% Similarity=0.371 Sum_probs=56.1
Q ss_pred CCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 33 NNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 33 ~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
+..+.-...|+++.+-..++..|+..+|..||++|..|||.++.++|++++|..|+|||+.
T Consensus 18 DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlV 78 (980)
T KOG4284|consen 18 DVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLV 78 (980)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEE
Confidence 3345557799999999999999999999999999999999999999999999999999984
No 35
>KOG0337|consensus
Probab=99.39 E-value=2.8e-13 Score=113.77 Aligned_cols=95 Identities=31% Similarity=0.535 Sum_probs=86.3
Q ss_pred cccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCC
Q psy7691 40 QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASS 119 (165)
Q Consensus 40 ~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~ 119 (165)
-.|.+++|...+.+++.+.||..|||+|+.+||.++.|+|+++.|.||||||.||+ || .++++-.. . ..
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~---ip-----m~e~Lk~~--s-~~ 89 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFL---IP-----MIEKLKSH--S-QT 89 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHH---HH-----HHHHHhhc--c-cc
Confidence 48999999999999999999999999999999999999999999999999999999 99 88877443 2 67
Q ss_pred CceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 120 GTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 120 g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
|...+++.|+ ++++.|..+.+..-++
T Consensus 90 g~Ralilspt-reLa~qtlkvvkdlgr 115 (529)
T KOG0337|consen 90 GLRALILSPT-RELALQTLKVVKDLGR 115 (529)
T ss_pred ccceeeccCc-HHHHHHHHHHHHHhcc
Confidence 7889999999 9999999998887665
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.39 E-value=1e-12 Score=119.29 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=80.7
Q ss_pred CCCccccccC--CCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccC
Q psy7691 36 PCPTQELTEG--CFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRT 113 (165)
Q Consensus 36 p~~i~~f~~l--~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~ 113 (165)
|..--.|... .+++.+.++|++.||..||++|.+|++.++.|+|++++++||||||++|. +| .++++.+.
T Consensus 8 p~~~a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~---LP-----iL~~l~~~ 79 (742)
T TIGR03817 8 PARAGRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQ---LP-----VLSALADD 79 (742)
T ss_pred CCCCcccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHH---HH-----HHHHHhhC
Confidence 3333344443 58999999999999999999999999999999999999999999999999 99 88887542
Q ss_pred CCCCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 114 GRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 114 ~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
.+..+++++|+ ++++.|+.+.+....
T Consensus 80 -----~~~~aL~l~Pt-raLa~q~~~~l~~l~ 105 (742)
T TIGR03817 80 -----PRATALYLAPT-KALAADQLRAVRELT 105 (742)
T ss_pred -----CCcEEEEEcCh-HHHHHHHHHHHHHhc
Confidence 35678999999 899998888877653
No 37
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.32 E-value=6.1e-12 Score=96.49 Aligned_cols=92 Identities=34% Similarity=0.529 Sum_probs=77.8
Q ss_pred cccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCc
Q psy7691 42 LTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGT 121 (165)
Q Consensus 42 f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~ 121 (165)
|+++.+++.+.+.|.+.|+..|++.|.++++.++.|+|++++++||+|||++++ +| .++++.... ...+.
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~---~~-----~l~~~~~~~--~~~~~ 70 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFL---IP-----ILEKLDPSP--KKDGP 70 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHH---HH-----HHHHHHhhc--ccCCc
Confidence 788999999999999999999999999999999999999999999999999887 77 666664421 13566
Q ss_pred eEEEECCCcHHHHHHHHHHHHhc
Q psy7691 122 AYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 122 ~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
.+++++|+ ++++.|+.+.+...
T Consensus 71 ~viii~p~-~~L~~q~~~~~~~~ 92 (203)
T cd00268 71 QALILAPT-RELALQIAEVARKL 92 (203)
T ss_pred eEEEEcCC-HHHHHHHHHHHHHH
Confidence 78888998 88888877766554
No 38
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.1e-12 Score=113.03 Aligned_cols=98 Identities=30% Similarity=0.473 Sum_probs=80.6
Q ss_pred ccccc-cCCCcHHHHHHHHhCCCCC------CchHHH---------------HHHHHHHcCCCeeeecccCCcccceeee
Q psy7691 39 TQELT-EGCFPNAVLQHLKGQGFEE------PTAIQA---------------QGWPIALSGRDMVGIAQTGSGKTLAVIN 96 (165)
Q Consensus 39 i~~f~-~l~l~~~l~~~l~~~g~~~------~t~~Q~---------------~a~~~~l~G~di~~~a~tgsGKt~~~~~ 96 (165)
.+.|. +....+.+...|...||.. .+..++ .|++.+.||.|+..+. +|+|
T Consensus 276 ~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~--------~Vin 347 (513)
T COG0513 276 VIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVS--------HVIN 347 (513)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccc--------eeEE
Confidence 44554 4678888999999999754 222222 1677778888888887 9999
Q ss_pred cCCCCChhHHHHhhccCCCCCCCCceEEEECCC-cHHHHHHHHHHHHhc
Q psy7691 97 FDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN-NGKQAKELIAVLTEA 144 (165)
Q Consensus 97 ~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~-~~~~~~~i~~~l~~~ 144 (165)
||+|.+.++|+||+|||||+|+.|.+++|++|. +...+..+.+.+...
T Consensus 348 yD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 348 YDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred ccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999996 788899999998766
No 39
>KOG0340|consensus
Probab=99.30 E-value=3.3e-12 Score=105.50 Aligned_cols=105 Identities=22% Similarity=0.289 Sum_probs=82.9
Q ss_pred CCccccccCCCcHHHH-HHHHhCCCCCCch----HHHH-----------------HHHHHHcCCCeeeecccCCccccee
Q psy7691 37 CPTQELTEGCFPNAVL-QHLKGQGFEEPTA----IQAQ-----------------GWPIALSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~-~~l~~~g~~~~t~----~Q~~-----------------a~~~~l~G~di~~~a~tgsGKt~~~ 94 (165)
..++.|.+.....+++ --|+..+++...- .|.+ |++.+.||.||+.+. .|
T Consensus 255 ~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~--------LV 326 (442)
T KOG0340|consen 255 GSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE--------LV 326 (442)
T ss_pred ceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee--------EE
Confidence 3467777654444444 4466677765322 1222 677888999999888 89
Q ss_pred eecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCC
Q psy7691 95 INFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149 (165)
Q Consensus 95 ~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p 149 (165)
+|||+|.++.+|+||+||++|+|+.|.+++|+++.+.+++..|++-+.....+.+
T Consensus 327 vN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 327 VNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred EecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999998887666554
No 40
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.29 E-value=5.6e-12 Score=110.35 Aligned_cols=79 Identities=33% Similarity=0.558 Sum_probs=70.2
Q ss_pred HHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCC
Q psy7691 70 GWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149 (165)
Q Consensus 70 a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p 149 (165)
|++.+.+|.|+..+. +|+|||+|.+.++|+||+||+||.|..|.+++|+.+.+...+.++.+.++..++++|
T Consensus 424 aTdvl~rGiDip~v~--------~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp 495 (518)
T PLN00206 424 ATGVLGRGVDLLRVR--------QVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIP 495 (518)
T ss_pred EecHhhccCCcccCC--------EEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCC
Confidence 445555666666665 899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHh
Q psy7691 150 PQLQDLA 156 (165)
Q Consensus 150 ~~~~~~~ 156 (165)
.++....
T Consensus 496 ~~l~~~~ 502 (518)
T PLN00206 496 RELANSR 502 (518)
T ss_pred HHHHhCh
Confidence 9998754
No 41
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.27 E-value=5.7e-12 Score=114.28 Aligned_cols=90 Identities=27% Similarity=0.302 Sum_probs=74.3
Q ss_pred CCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCC-CCCCCCceEE
Q psy7691 46 CFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTG-RCASSGTAYT 124 (165)
Q Consensus 46 ~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~-r~~~~g~~~~ 124 (165)
-+++.+.+++... |+.||+.|.+|||.+..|.|++++||||||||+|-+ || .+.++-.-+ .....|..++
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAf---Lp-----il~~l~~~~~~~~~~~i~~l 77 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAF---LP-----VINELLSLGKGKLEDGIYAL 77 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHH---HH-----HHHHHHhccCCCCCCceEEE
Confidence 3889999999998 999999999999999999999999999999999998 89 677664442 3335688999
Q ss_pred EECCCcHHHHHHHHHHHHhcC
Q psy7691 125 FFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 125 ~~~p~~~~~~~~i~~~l~~~~ 145 (165)
+++|. +.+..++.+.++...
T Consensus 78 YIsPL-kALn~Di~~rL~~~~ 97 (814)
T COG1201 78 YISPL-KALNNDIRRRLEEPL 97 (814)
T ss_pred EeCcH-HHHHHHHHHHHHHHH
Confidence 99999 666666666555443
No 42
>KOG0344|consensus
Probab=99.26 E-value=9.2e-12 Score=107.95 Aligned_cols=116 Identities=27% Similarity=0.450 Sum_probs=94.5
Q ss_pred CCCCccccc-cCCCcHHHHHHHH-------hCCCCCCchHHHH---------------HHHHHHcCCCeeeecccCCccc
Q psy7691 35 IPCPTQELT-EGCFPNAVLQHLK-------GQGFEEPTAIQAQ---------------GWPIALSGRDMVGIAQTGSGKT 91 (165)
Q Consensus 35 ~p~~i~~f~-~l~l~~~l~~~l~-------~~g~~~~t~~Q~~---------------a~~~~l~G~di~~~a~tgsGKt 91 (165)
.++|+..|. ++.-+.+|...|. ..=+..-+..|.. |++.+.||.|+-++.
T Consensus 386 ~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn------- 458 (593)
T KOG0344|consen 386 FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVN------- 458 (593)
T ss_pred CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcc-------
Confidence 566666665 4577778888773 2223334555543 677778888887776
Q ss_pred ceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChHHHHHhhh
Q psy7691 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQDLANS 158 (165)
Q Consensus 92 ~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~~~~~~~~ 158 (165)
.|+|||+|.+...|+||+||+||+|+.|.+++|++-.+.....-+...++..+-+||.|.-.+..-
T Consensus 459 -~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m~~~k~ 524 (593)
T KOG0344|consen 459 -LVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIMGIKKL 524 (593)
T ss_pred -eEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHHhhhhh
Confidence 899999999999999999999999999999999999999999999999999999999999888753
No 43
>KOG0342|consensus
Probab=99.24 E-value=7.3e-12 Score=106.83 Aligned_cols=61 Identities=31% Similarity=0.477 Sum_probs=57.4
Q ss_pred HHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 70 GWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 70 a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
|++.+.||+|++.+. ++++||.|.+.++||||+|||||.|..|.++++++|.+...+..+.
T Consensus 386 cTDVaARGlD~P~V~--------~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 386 CTDVAARGLDIPDVD--------WVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ecchhhccCCCCCce--------EEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 889999999999999 9999999999999999999999999999999999999877777766
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=99.19 E-value=3.6e-11 Score=109.21 Aligned_cols=88 Identities=25% Similarity=0.362 Sum_probs=76.2
Q ss_pred ccccCCCcHHHHHHHHhCCCCCCchHHHHHHHH-HHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCC
Q psy7691 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI-ALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASS 119 (165)
Q Consensus 41 ~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~-~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~ 119 (165)
.|+++++++.+.+++.+.||..++|+|.+|++. ++.|.|++++||||||||+++. +| .++++.+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~---la-----il~~l~~------- 66 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAE---LA-----MLKAIAR------- 66 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHH---HH-----HHHHHhc-------
Confidence 688999999999999999999999999999998 7889999999999999999988 77 6776632
Q ss_pred CceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 120 GTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 120 g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
+..++++.|+ ++++.|..+.+...
T Consensus 67 ~~kal~i~P~-raLa~q~~~~~~~~ 90 (737)
T PRK02362 67 GGKALYIVPL-RALASEKFEEFERF 90 (737)
T ss_pred CCcEEEEeCh-HHHHHHHHHHHHHh
Confidence 3358889999 88888888777653
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.18 E-value=5e-11 Score=110.12 Aligned_cols=87 Identities=24% Similarity=0.289 Sum_probs=70.7
Q ss_pred CCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCC--CCCceE
Q psy7691 46 CFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCA--SSGTAY 123 (165)
Q Consensus 46 ~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~--~~g~~~ 123 (165)
.+++.+.+++.+ +|..||++|.+|||.++.|.|++++||||||||++++ +| .++++-+.+..+ ..+..+
T Consensus 17 ~l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~---Lp-----il~~l~~~~~~~~~~~~~~~ 87 (876)
T PRK13767 17 LLRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAF---LA-----IIDELFRLGREGELEDKVYC 87 (876)
T ss_pred hcCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHH---HH-----HHHHHHhhccccCCCCCeEE
Confidence 377788888776 7999999999999999999999999999999999999 88 676664322222 356789
Q ss_pred EEECCCcHHHHHHHHHHHH
Q psy7691 124 TFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 124 ~~~~p~~~~~~~~i~~~l~ 142 (165)
++++|+ ++++.|+.+.+.
T Consensus 88 LyIsPt-raLa~di~~~L~ 105 (876)
T PRK13767 88 LYVSPL-RALNNDIHRNLE 105 (876)
T ss_pred EEEcCH-HHHHHHHHHHHH
Confidence 999998 888888876554
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=99.12 E-value=1.3e-10 Score=105.37 Aligned_cols=88 Identities=25% Similarity=0.309 Sum_probs=74.9
Q ss_pred ccccCCCcHHHHHHHHhCCCCCCchHHHHHHHH-HHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCC
Q psy7691 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI-ALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASS 119 (165)
Q Consensus 41 ~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~-~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~ 119 (165)
.|+++++++.+.+.|++.||..++++|.+|++. ++.|.|+++++|||||||+++. +| .++++-+ .
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~---l~-----il~~l~~------~ 67 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAE---IV-----MVNKLLR------E 67 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHH---HH-----HHHHHHh------c
Confidence 578899999999999999999999999999986 7999999999999999999987 78 6666533 1
Q ss_pred CceEEEECCCcHHHHHHHHHHHHh
Q psy7691 120 GTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 120 g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
+..+++++|+ ++++.|..+.+..
T Consensus 68 ~~~~l~l~P~-~aLa~q~~~~~~~ 90 (720)
T PRK00254 68 GGKAVYLVPL-KALAEEKYREFKD 90 (720)
T ss_pred CCeEEEEeCh-HHHHHHHHHHHHH
Confidence 3457788998 8888888776653
No 47
>KOG0334|consensus
Probab=99.09 E-value=2.3e-10 Score=104.59 Aligned_cols=135 Identities=29% Similarity=0.443 Sum_probs=103.5
Q ss_pred CCHHHHHHHHhhcCcEEecCCCCCCcccccc-CCCcHHHHHHHHhCCCCCCchH----HH-----------------HHH
Q psy7691 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTE-GCFPNAVLQHLKGQGFEEPTAI----QA-----------------QGW 71 (165)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~~~~p~~i~~f~~-l~l~~~l~~~l~~~g~~~~t~~----Q~-----------------~a~ 71 (165)
..++++..+.+..+.-.. ..+++.|++ ..-+..+.+.|.+.||.+.+.. |. .|+
T Consensus 595 ~e~eKf~kL~eLl~e~~e----~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaT 670 (997)
T KOG0334|consen 595 IENEKFLKLLELLGERYE----DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVAT 670 (997)
T ss_pred CchHHHHHHHHHHHHHhh----cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEeh
Confidence 345566666554443333 334556654 5899999999999999765421 21 145
Q ss_pred HHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChH
Q psy7691 72 PIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151 (165)
Q Consensus 72 ~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~ 151 (165)
..+.+|.|+.-.- .++|||.|+-.++|+||+|||||+|++|.+++|+.|.+...+..|.+.+....+++|+.
T Consensus 671 svvarGLdv~~l~--------Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~ 742 (997)
T KOG0334|consen 671 SVVARGLDVKELI--------LVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKL 742 (997)
T ss_pred hhhhcccccccce--------EEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchH
Confidence 5566666654443 89999999999999999999999999999999999988899999999999999999999
Q ss_pred HHHHhhhCC
Q psy7691 152 LQDLANSNP 160 (165)
Q Consensus 152 ~~~~~~~~~ 160 (165)
+..+++...
T Consensus 743 l~~l~~~f~ 751 (997)
T KOG0334|consen 743 LQALSERFK 751 (997)
T ss_pred HHHHHHHHH
Confidence 988876543
No 48
>KOG0338|consensus
Probab=99.08 E-value=1.6e-10 Score=99.46 Aligned_cols=67 Identities=36% Similarity=0.601 Sum_probs=61.7
Q ss_pred HHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 70 GWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 70 a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
|++.+.||.||.++- .||||++|.+.+.|+||+|||+|+|+.|.+++++.-.+|.++..|.+.....
T Consensus 482 aTDvAsRGLDI~gV~--------tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a 548 (691)
T KOG0338|consen 482 ATDVASRGLDIEGVQ--------TVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKA 548 (691)
T ss_pred EechhhccCCcccee--------EEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhc
Confidence 778889999999887 8999999999999999999999999999999999999999999998885443
No 49
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.06 E-value=1.4e-10 Score=98.93 Aligned_cols=108 Identities=20% Similarity=0.321 Sum_probs=80.5
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCCCC------ch-HHHH--------------HHHHHHcCCCeeeecccCCcccceee
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFEEP------TA-IQAQ--------------GWPIALSGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~~~------t~-~Q~~--------------a~~~~l~G~di~~~a~tgsGKt~~~~ 95 (165)
.++.|. ...-++.+.+.|...|+... +. .+.. |++.+.+|.|+..+. +|+
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~--------~VI 328 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT--------HVF 328 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC--------EEE
Confidence 344454 45678888888988887531 11 1222 344556777777666 899
Q ss_pred ecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChHHH
Q psy7691 96 NFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153 (165)
Q Consensus 96 ~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~~~ 153 (165)
|||+|.+.++|+||+||+||.|+.|.+++|+++.+......+.+++.......+....
T Consensus 329 ~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 386 (423)
T PRK04837 329 NYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYDSD 386 (423)
T ss_pred EeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChh
Confidence 9999999999999999999999999999999999888888888888776544443333
No 50
>KOG0350|consensus
Probab=99.04 E-value=4.1e-10 Score=96.62 Aligned_cols=77 Identities=29% Similarity=0.399 Sum_probs=61.9
Q ss_pred HHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHh----c
Q psy7691 69 QGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE----A 144 (165)
Q Consensus 69 ~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~----~ 144 (165)
.|.+.+.||.|+-.+. .|||||+|.+..+|+||+|||+|+|+.|.+++++.-.+..+...+.+..+. .
T Consensus 488 IcSD~laRGiDv~~v~--------~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~d~~~ 559 (620)
T KOG0350|consen 488 ICSDALARGIDVNDVD--------NVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLWDGVE 559 (620)
T ss_pred EehhhhhcCCcccccc--------eEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcccCCcc
Confidence 4788899999998877 899999999999999999999999999999999998876665555554444 3
Q ss_pred CCCCChHHH
Q psy7691 145 SQPIPPQLQ 153 (165)
Q Consensus 145 ~~~~p~~~~ 153 (165)
.+++|+...
T Consensus 560 i~~~e~~~~ 568 (620)
T KOG0350|consen 560 IQPIEYIFI 568 (620)
T ss_pred eeecCchHH
Confidence 444444433
No 51
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.99 E-value=9.1e-10 Score=98.57 Aligned_cols=102 Identities=25% Similarity=0.393 Sum_probs=77.7
Q ss_pred ccccccCCCcHHHHHHHHhCCCCC------CchHHH-H--------------HHHHHHcCCCeeeecccCCcccceeeec
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEE------PTAIQA-Q--------------GWPIALSGRDMVGIAQTGSGKTLAVINF 97 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~------~t~~Q~-~--------------a~~~~l~G~di~~~a~tgsGKt~~~~~~ 97 (165)
++.+.+..-...+...|...||.. .+..|. + |++.+.+|.|+..+. +|+||
T Consensus 249 IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~--------~VI~~ 320 (629)
T PRK11634 249 IIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS--------LVVNY 320 (629)
T ss_pred EEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC--------EEEEe
Confidence 333344567788888898888753 222222 2 445556667766666 89999
Q ss_pred CCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCC
Q psy7691 98 DYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 98 ~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
|+|.+.++|+||+||+||+|+.|.+++++.+.+...+..|.+.+.....++
T Consensus 321 d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~ 371 (629)
T PRK11634 321 DIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 371 (629)
T ss_pred CCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCccee
Confidence 999999999999999999999999999999988888888888776665444
No 52
>KOG0329|consensus
Probab=98.99 E-value=1.4e-09 Score=87.12 Aligned_cols=97 Identities=21% Similarity=0.326 Sum_probs=79.9
Q ss_pred cccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCC
Q psy7691 40 QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASS 119 (165)
Q Consensus 40 ~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~ 119 (165)
.-|.+.-|-+++++++.+.||..|+.+|.+|||.+.-|+|++++|..|.|||..|+ +. -+|++.- -.
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfv---l~-----tlqqiep-----v~ 108 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV---LA-----TLQQIEP-----VD 108 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeee---hh-----hhhhcCC-----CC
Confidence 34556678999999999999999999999999999999999999999999999888 66 5666632 23
Q ss_pred C-ceEEEECCCcHHHHHHHHHHHHhcCCCCCh
Q psy7691 120 G-TAYTFFTPNNGKQAKELIAVLTEASQPIPP 150 (165)
Q Consensus 120 g-~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~ 150 (165)
| ..+++++.+ |+++.||.+-.++-.+-+|.
T Consensus 109 g~vsvlvmcht-relafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 109 GQVSVLVMCHT-RELAFQISKEYERFSKYMPS 139 (387)
T ss_pred CeEEEEEEecc-HHHHHHHHHHHHHHHhhCCC
Confidence 3 456667776 99999999888776665554
No 53
>KOG0348|consensus
Probab=98.99 E-value=5.1e-10 Score=96.78 Aligned_cols=67 Identities=30% Similarity=0.482 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 67 QAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 67 Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
-.-|++.+.||.|++.+. +++.||.|....+|+||+|||+|+|.+|.+++|+.|.+.+..+.+....
T Consensus 500 VLLcTDVAaRGLDlP~V~--------~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 500 VLLCTDVAARGLDLPHVG--------LVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred EEEehhhhhccCCCCCcC--------eEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 345899999999999998 9999999999999999999999999999999999999877665555443
No 54
>KOG0347|consensus
Probab=98.98 E-value=4.9e-10 Score=97.15 Aligned_cols=101 Identities=29% Similarity=0.393 Sum_probs=81.6
Q ss_pred CCCCcccccc-CCCcHHHHHHHHhCCCCCCch-----HHHH-----------------HHHHHHcCCCeeeecccCCccc
Q psy7691 35 IPCPTQELTE-GCFPNAVLQHLKGQGFEEPTA-----IQAQ-----------------GWPIALSGRDMVGIAQTGSGKT 91 (165)
Q Consensus 35 ~p~~i~~f~~-l~l~~~l~~~l~~~g~~~~t~-----~Q~~-----------------a~~~~l~G~di~~~a~tgsGKt 91 (165)
.|+..+.|.+ ...-..+.-.|+..++. |.+ +|.+ |++.+.||.||+.+.
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L~i~-p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~------- 533 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNLDIP-PLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQ------- 533 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhcCCC-CchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcc-------
Confidence 6777667765 34555666666666765 444 2332 788999999999998
Q ss_pred ceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 92 ~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
+||||.+|...+-|+||.|||+|++..|..+.++.|.+...+..|.+-+...
T Consensus 534 -HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 534 -HVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKK 585 (731)
T ss_pred -eEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999988888888777654
No 55
>KOG0346|consensus
Probab=98.97 E-value=8.5e-10 Score=93.56 Aligned_cols=62 Identities=35% Similarity=0.685 Sum_probs=54.0
Q ss_pred HHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 74 ALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
+.||.|+=.++ +|+|||+|.+++.||||+|||+|+++.|.+++|+.|.++.-...|+..+..
T Consensus 363 VsRGIDF~~V~--------~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 363 VSRGIDFHHVS--------NVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKD 424 (569)
T ss_pred hhccccchhee--------eeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhh
Confidence 57888887777 999999999999999999999999999999999999987755566655544
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=98.96 E-value=1.1e-09 Score=98.51 Aligned_cols=86 Identities=19% Similarity=0.219 Sum_probs=71.1
Q ss_pred ccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCC
Q psy7691 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSG 120 (165)
Q Consensus 41 ~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g 120 (165)
.|+++++++.+.+.+.+.+|. ++++|.+|++.+..|.|+++++|||||||+++. ++ .++.+.+ +
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~---la-----il~~l~~-------~ 65 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAY---SA-----IYETFLA-------G 65 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHH---HH-----HHHHHHh-------C
Confidence 588899999999999999997 999999999999999999999999999999876 55 4444422 2
Q ss_pred ceEEEECCCcHHHHHHHHHHHHh
Q psy7691 121 TAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 121 ~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
..+++++|+ ++++.|..+.+..
T Consensus 66 ~k~v~i~P~-raLa~q~~~~~~~ 87 (674)
T PRK01172 66 LKSIYIVPL-RSLAMEKYEELSR 87 (674)
T ss_pred CcEEEEech-HHHHHHHHHHHHH
Confidence 346677788 8888887776653
No 57
>KOG0350|consensus
Probab=98.94 E-value=2.3e-09 Score=92.12 Aligned_cols=99 Identities=20% Similarity=0.163 Sum_probs=78.4
Q ss_pred CccccccCCCcHHHHHH----------HHhCCCCCCchHHHHHHHHHH---------cCCCeeeecccCCcccceeeecC
Q psy7691 38 PTQELTEGCFPNAVLQH----------LKGQGFEEPTAIQAQGWPIAL---------SGRDMVGIAQTGSGKTLAVINFD 98 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~----------l~~~g~~~~t~~Q~~a~~~~l---------~G~di~~~a~tgsGKt~~~~~~~ 98 (165)
....|+.+++.+.+... +.++++....|+|...+|.++ +++||.+.|+||||||++|.
T Consensus 125 slq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~--- 201 (620)
T KOG0350|consen 125 SLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYV--- 201 (620)
T ss_pred ceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeeh---
Confidence 46677888777665554 899999999999988887663 57999999999999999999
Q ss_pred CCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCC
Q psy7691 99 YPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 99 lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
+| +++-++. |. -+-...+++.|+ ++++.|+.+.+.+.+...
T Consensus 202 iP-----IVQ~L~~--R~-v~~LRavVivPt-r~L~~QV~~~f~~~~~~t 242 (620)
T KOG0350|consen 202 IP-----IVQLLSS--RP-VKRLRAVVIVPT-RELALQVYDTFKRLNSGT 242 (620)
T ss_pred hH-----HHHHHcc--CC-ccceEEEEEeeH-HHHHHHHHHHHHHhccCC
Confidence 99 7876642 21 122567888888 999999999998876654
No 58
>KOG0345|consensus
Probab=98.92 E-value=1.3e-09 Score=93.05 Aligned_cols=54 Identities=35% Similarity=0.648 Sum_probs=51.1
Q ss_pred HHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 69 QGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 69 ~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
-|++.+.||.||.++. +|++||.|.+.+.++||+|||+|+|+.|.+++++.|.+
T Consensus 312 ~~TDVaARGlDip~iD--------~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E 365 (567)
T KOG0345|consen 312 FCTDVAARGLDIPGID--------LVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPRE 365 (567)
T ss_pred EeehhhhccCCCCCce--------EEEecCCCCChhHHHhhcchhhhccCccceEEEecccH
Confidence 3788999999999999 99999999999999999999999999999999999964
No 59
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.91 E-value=2.1e-09 Score=92.61 Aligned_cols=102 Identities=26% Similarity=0.330 Sum_probs=74.2
Q ss_pred CCcccccc-CCCcHHHHHHHHhCCCCC------Cch-HHHHHHHHH--------------HcCCCeeeecccCCccccee
Q psy7691 37 CPTQELTE-GCFPNAVLQHLKGQGFEE------PTA-IQAQGWPIA--------------LSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 37 ~~i~~f~~-l~l~~~l~~~l~~~g~~~------~t~-~Q~~a~~~~--------------l~G~di~~~a~tgsGKt~~~ 94 (165)
..++.|.. ..-.+.+.+.|...|+.. .+. .+.+++..+ .+|.|+..+. ++
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~--------~V 314 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALE--------AV 314 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCC--------eE
Confidence 34455544 467778888888877643 122 233333333 4445544444 89
Q ss_pred eecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 95 INFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 95 ~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
+|||+|.+.++|+||+||+||+|..|.+++++.+.+...+..+.+.+.....
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~ 366 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLN 366 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999988888888888766443
No 60
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.88 E-value=3.5e-09 Score=93.89 Aligned_cols=99 Identities=26% Similarity=0.429 Sum_probs=74.2
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCCCC------chH-HHH--------------HHHHHHcCCCeeeecccCCcccceee
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFEEP------TAI-QAQ--------------GWPIALSGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~~~------t~~-Q~~--------------a~~~~l~G~di~~~a~tgsGKt~~~~ 95 (165)
.++.|. .....+.+.+.|.+.|+... +.. +.. |++.+.+|.|+..+. +|+
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~--------~VI 330 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK--------YVY 330 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC--------EEE
Confidence 344554 45678888888988887531 222 222 344455566665555 899
Q ss_pred ecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 96 NFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 96 ~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
|||+|.+.++|+||+||+||.|..|.+++|+++.+...+.++.+.+...
T Consensus 331 nyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 331 NYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred EcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999998777788888877654
No 61
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.87 E-value=2.3e-09 Score=92.44 Aligned_cols=100 Identities=28% Similarity=0.474 Sum_probs=76.2
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCCCC------chH-HHH--------------HHHHHHcCCCeeeecccCCcccceee
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFEEP------TAI-QAQ--------------GWPIALSGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~~~------t~~-Q~~--------------a~~~~l~G~di~~~a~tgsGKt~~~~ 95 (165)
.++.|. +..-.+.+.+.|...|+... +.. ..+ |++.+.+|.|+..+. +|+
T Consensus 247 ~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~--------~VI 318 (456)
T PRK10590 247 QVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELP--------HVV 318 (456)
T ss_pred cEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCC--------EEE
Confidence 344454 34567778888888777432 111 112 455566777776666 899
Q ss_pred ecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 96 NFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 96 ~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
|||+|.+.++|+||+||+||+|..|.+++++++.+..++..+++.+....
T Consensus 319 ~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 319 NYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred EeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999998889999998877654
No 62
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.86 E-value=4e-09 Score=90.14 Aligned_cols=107 Identities=24% Similarity=0.354 Sum_probs=72.9
Q ss_pred Ccccc-ccCCCcHHHHHHHHhCCCCCC------c-hHHHHHHHHHHcCC-Ceeeec-ccCCcc----cceeeecCCCCCh
Q psy7691 38 PTQEL-TEGCFPNAVLQHLKGQGFEEP------T-AIQAQGWPIALSGR-DMVGIA-QTGSGK----TLAVINFDYPNSS 103 (165)
Q Consensus 38 ~i~~f-~~l~l~~~l~~~l~~~g~~~~------t-~~Q~~a~~~~l~G~-di~~~a-~tgsGK----t~~~~~~~lP~~~ 103 (165)
.++.| .+..-.+.+.+.|...|+... + ..+..++..+..|. +++++. .-+.|- .-+|+|||+|.+.
T Consensus 247 ~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~ 326 (434)
T PRK11192 247 RSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSA 326 (434)
T ss_pred eEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCH
Confidence 34444 445677788888888877531 2 22333444444442 222211 111221 1279999999999
Q ss_pred hHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 104 EDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 104 ~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
+.|+||+||+||+|..|.+++++...+...+..+.+++...
T Consensus 327 ~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 327 DTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred HHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998888888888877654
No 63
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.86 E-value=3.3e-09 Score=91.87 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=56.6
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.||..++|+|.++++.++.|+|+++++|||+|||++|. +| .+.. +...++++|+ ++++.+.
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~---lp-----~l~~----------~~~~lVi~P~-~~L~~dq 67 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQ---LP-----ALCS----------DGITLVISPL-ISLMEDQ 67 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHH---HH-----HHHc----------CCcEEEEecH-HHHHHHH
Confidence 69999999999999999999999999999999999988 88 3321 1235778888 8887777
Q ss_pred HHHHHhcC
Q psy7691 138 IAVLTEAS 145 (165)
Q Consensus 138 ~~~l~~~~ 145 (165)
.+.+...+
T Consensus 68 ~~~l~~~g 75 (470)
T TIGR00614 68 VLQLKASG 75 (470)
T ss_pred HHHHHHcC
Confidence 66666544
No 64
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.84 E-value=4.7e-09 Score=96.34 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=85.9
Q ss_pred hHhhcCCHHHHHH----HHhhcCcEEecCCCCCCccccccCCCcHHHHHHHH-----hCCCCCC---chHHHHHHHHHHc
Q psy7691 9 ERAARLSESEVEA----FRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLK-----GQGFEEP---TAIQAQGWPIALS 76 (165)
Q Consensus 9 ~~~~~~~~~~~~~----~~~~~~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~-----~~g~~~~---t~~Q~~a~~~~l~ 76 (165)
+.+..+|++++.. |+.... .|..+.. .--+.+.+..++.+.+. .+||..| +|+|.+++|.++.
T Consensus 32 ~~~~~lsd~eL~~kt~~~k~~l~---~~~~ld~--~l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l 106 (970)
T PRK12899 32 EKFSSLSDDELRNKTAELKQRYQ---DGESLDK--LLPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAM 106 (970)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHH---cCCchHH--HHHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhc
Confidence 3566777766543 443322 2222111 12355788888888877 6899999 9999999999999
Q ss_pred CCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCC
Q psy7691 77 GRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQP 147 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~ 147 (165)
+.|+++.++||+|||++|+ +| .++++-. ++ .+.+++|+ ++++.|+.+.+......
T Consensus 107 ~~gvIAeaqTGeGKTLAf~---LP-----~l~~aL~-g~------~v~IVTpT-rELA~Qdae~m~~L~k~ 161 (970)
T PRK12899 107 HKGFITEMQTGEGKTLTAV---MP-----LYLNALT-GK------PVHLVTVN-DYLAQRDCEWVGSVLRW 161 (970)
T ss_pred CCCeEEEeCCCCChHHHHH---HH-----HHHHHhh-cC------CeEEEeCC-HHHHHHHHHHHHHHHhh
Confidence 9999999999999999999 99 5655532 11 26788997 88999999998876443
No 65
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.78 E-value=1.4e-08 Score=90.71 Aligned_cols=75 Identities=25% Similarity=0.260 Sum_probs=58.9
Q ss_pred HHHHHh-CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 52 LQHLKG-QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 52 ~~~l~~-~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
.+.|++ .||..++++|.++++.++.|.|+++++|||+|||++|. +| .+.+-| .+++++|+
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~---lp-----al~~~g----------~tlVisPl- 74 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQ---IP-----ALVLDG----------LTLVVSPL- 74 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH---HH-----HHHcCC----------CEEEEecH-
Confidence 334444 59999999999999999999999999999999999988 88 443321 35777887
Q ss_pred HHHHHHHHHHHHhcC
Q psy7691 131 GKQAKELIAVLTEAS 145 (165)
Q Consensus 131 ~~~~~~i~~~l~~~~ 145 (165)
.+++.+..+.+...+
T Consensus 75 ~sL~~dqv~~l~~~g 89 (607)
T PRK11057 75 ISLMKDQVDQLLANG 89 (607)
T ss_pred HHHHHHHHHHHHHcC
Confidence 788777766666543
No 66
>KOG0343|consensus
Probab=98.77 E-value=7.3e-09 Score=90.09 Aligned_cols=62 Identities=32% Similarity=0.535 Sum_probs=54.9
Q ss_pred HHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHH-HHHHHHH
Q psy7691 70 GWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGK-QAKELIA 139 (165)
Q Consensus 70 a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~-~~~~i~~ 139 (165)
|++.+.||.|+.++. +|++||-|.++++||||+||++|.+..|.++++++|.+.+ +...|.+
T Consensus 371 ~TDv~aRGLDFpaVd--------wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 371 CTDVAARGLDFPAVD--------WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred eehhhhccCCCcccc--------eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHH
Confidence 778889999999998 9999999999999999999999999999999999999844 4444443
No 67
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.76 E-value=1.6e-08 Score=93.13 Aligned_cols=87 Identities=23% Similarity=0.326 Sum_probs=73.8
Q ss_pred CcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEE
Q psy7691 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFF 126 (165)
Q Consensus 47 l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~ 126 (165)
....+..+|.+.|...++++|.+|+..+..|+|++++++||||||++|. +| .++.+.+...+ .++++
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~Fl---lP-----Ild~~l~~~~a-----~AL~l 121 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFL---LP-----ILDHLLRDPSA-----RALLL 121 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHH---HH-----HHHHHhhCcCc-----cEEEE
Confidence 4455688899999999999999999999999999999999999999999 99 99988775333 78999
Q ss_pred CCCc---HHHHHHHHHHHHhcCC
Q psy7691 127 TPNN---GKQAKELIAVLTEASQ 146 (165)
Q Consensus 127 ~p~~---~~~~~~i~~~l~~~~~ 146 (165)
.|++ ++++..+.+++.....
T Consensus 122 YPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 122 YPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred echhhhHhhHHHHHHHHHHhCCC
Confidence 9997 5677777777776654
No 68
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.73 E-value=2e-08 Score=91.93 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=60.9
Q ss_pred HHHHHh-CCCCCCchHHHHHHHHHHcCC-CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCC
Q psy7691 52 LQHLKG-QGFEEPTAIQAQGWPIALSGR-DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129 (165)
Q Consensus 52 ~~~l~~-~g~~~~t~~Q~~a~~~~l~G~-di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~ 129 (165)
.++++. .||. ||++|.+++|.++.|+ +++++++||||||.+|..|.+|. .. ......++++++|+
T Consensus 5 ~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~---------~~---~~~~~~rLv~~vPt 71 (844)
T TIGR02621 5 DEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV---------EI---GAKVPRRLVYVVNR 71 (844)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc---------cc---cccccceEEEeCch
Confidence 445555 5998 9999999999999998 57778999999999665344551 11 11122355556677
Q ss_pred cHHHHHHHHHHHHhcCCCC
Q psy7691 130 NGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 130 ~~~~~~~i~~~l~~~~~~~ 148 (165)
|+++.|+.+.++...+.+
T Consensus 72 -ReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 72 -RTVVDQVTEEAEKIGERL 89 (844)
T ss_pred -HHHHHHHHHHHHHHHHHh
Confidence 999999999988877655
No 69
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.73 E-value=1.4e-08 Score=88.00 Aligned_cols=99 Identities=27% Similarity=0.412 Sum_probs=72.5
Q ss_pred ccccc-cCCCcHHHHHHHHhCCCCC-------CchHHHHHHHHH--------------HcCCCeeeecccCCcccceeee
Q psy7691 39 TQELT-EGCFPNAVLQHLKGQGFEE-------PTAIQAQGWPIA--------------LSGRDMVGIAQTGSGKTLAVIN 96 (165)
Q Consensus 39 i~~f~-~l~l~~~l~~~l~~~g~~~-------~t~~Q~~a~~~~--------------l~G~di~~~a~tgsGKt~~~~~ 96 (165)
++.|. ...-.+.+.+.|...|+.. +...+.+....+ .+|.|+..+. ++++
T Consensus 338 ~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~--------~VI~ 409 (475)
T PRK01297 338 VMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS--------HVIN 409 (475)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCC--------EEEE
Confidence 44444 4456677777888777643 112222333333 3444444444 7999
Q ss_pred cCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 97 FDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 97 ~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
||+|.+..+|+||+||+||.|..|.+++|+...+...+..+.+++....
T Consensus 410 ~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 410 FTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred eCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999888888889988887764
No 70
>PTZ00424 helicase 45; Provisional
Probab=98.68 E-value=1e-08 Score=86.40 Aligned_cols=113 Identities=26% Similarity=0.347 Sum_probs=77.2
Q ss_pred ccccccCCCcHHHHHHHHhCCCCC------C-chHHHHHHHHHHcC-CCeeeeccc-CCc----ccceeeecCCCCChhH
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEE------P-TAIQAQGWPIALSG-RDMVGIAQT-GSG----KTLAVINFDYPNSSED 105 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~------~-t~~Q~~a~~~~l~G-~di~~~a~t-gsG----Kt~~~~~~~lP~~~~~ 105 (165)
++.+.+..-.+.+.+.|...|+.. . ...+...+..+..| .+++++... +.| ...++++||+|.+..+
T Consensus 271 ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~ 350 (401)
T PTZ00424 271 IIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPEN 350 (401)
T ss_pred EEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHH
Confidence 333344456677777787776632 1 22233334444444 233322211 112 1227999999999999
Q ss_pred HHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChH
Q psy7691 106 YIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151 (165)
Q Consensus 106 ~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~ 151 (165)
|+||+||+||.|+.|.+++++.+.+.+.+..+.+.+.....+.+..
T Consensus 351 y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 351 YIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred EeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 9999999999999999999999999999999999988877776543
No 71
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.68 E-value=3.1e-08 Score=88.08 Aligned_cols=75 Identities=25% Similarity=0.313 Sum_probs=58.3
Q ss_pred HHHh-CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHH
Q psy7691 54 HLKG-QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGK 132 (165)
Q Consensus 54 ~l~~-~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~ 132 (165)
.|++ .||..++++|.++++.++.|.|+++++|||+|||++|. +| .+.+ .| ..++++|+ ..
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~---lp-----al~~---------~g-~~lVisPl-~s 64 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQ---VP-----ALLL---------KG-LTVVISPL-IS 64 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHH---HH-----HHHc---------CC-cEEEEcCC-HH
Confidence 3444 69999999999999999999999999999999999988 88 3422 12 35677888 77
Q ss_pred HHHHHHHHHHhcCCC
Q psy7691 133 QAKELIAVLTEASQP 147 (165)
Q Consensus 133 ~~~~i~~~l~~~~~~ 147 (165)
++.+..+.+...+.+
T Consensus 65 L~~dq~~~l~~~gi~ 79 (591)
T TIGR01389 65 LMKDQVDQLRAAGVA 79 (591)
T ss_pred HHHHHHHHHHHcCCc
Confidence 777666666665443
No 72
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.67 E-value=4.3e-08 Score=93.01 Aligned_cols=84 Identities=19% Similarity=0.135 Sum_probs=63.6
Q ss_pred CcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEE
Q psy7691 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFF 126 (165)
Q Consensus 47 l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~ 126 (165)
.-.++.+.+.+.....|+++|..++|.++.|+|++++|+||+|||. |. +| ..+.+.. .|..++++
T Consensus 63 ~~~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~---l~-----~~~~l~~------~g~~vLIL 127 (1171)
T TIGR01054 63 ELKEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FG---LA-----MSLFLAK------KGKRCYII 127 (1171)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HH---HH-----HHHHHHh------cCCeEEEE
Confidence 3445666676643446999999999999999999999999999996 54 56 3333321 25678999
Q ss_pred CCCcHHHHHHHHHHHHhcCC
Q psy7691 127 TPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 127 ~p~~~~~~~~i~~~l~~~~~ 146 (165)
+|+ ++++.|+.+.+.....
T Consensus 128 ~PT-reLa~Qi~~~l~~l~~ 146 (1171)
T TIGR01054 128 LPT-TLLVIQVAEKISSLAE 146 (1171)
T ss_pred eCH-HHHHHHHHHHHHHHHH
Confidence 999 9999998887776543
No 73
>KOG0329|consensus
Probab=98.66 E-value=1.8e-08 Score=80.72 Aligned_cols=76 Identities=26% Similarity=0.484 Sum_probs=64.1
Q ss_pred HHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc-HHHHHHHHHHHHhcCCC
Q psy7691 69 QGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN-GKQAKELIAVLTEASQP 147 (165)
Q Consensus 69 ~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~-~~~~~~i~~~l~~~~~~ 147 (165)
.|++.+-+|+|+=-+. .++|||+|.+.++|+||++|+||.|.+|.++.+++..+ ...+..+..-++....+
T Consensus 303 vat~lfgrgmdiervN--------i~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~e 374 (387)
T KOG0329|consen 303 VATDLFGRGMDIERVN--------IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKE 374 (387)
T ss_pred HHhhhhccccCcccce--------eeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhh
Confidence 3566677888875554 89999999999999999999999999999999998764 45677888888888888
Q ss_pred CChHH
Q psy7691 148 IPPQL 152 (165)
Q Consensus 148 ~p~~~ 152 (165)
+|..+
T Consensus 375 Lpdei 379 (387)
T KOG0329|consen 375 LPDEI 379 (387)
T ss_pred cCccc
Confidence 88873
No 74
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.66 E-value=3.4e-08 Score=73.06 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 64 TAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 64 t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
|+.|.++++.+..|.|+++.++||+|||.++. +| .++.+.+. ....++++.|+ ++++.++.+.+..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~---~~-----~l~~~~~~-----~~~~~lii~P~-~~l~~q~~~~~~~ 66 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYI---LP-----ALNRLQEG-----KDARVLIIVPT-RALAEQQFERLRK 66 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHH---HH-----HHHHHHTT-----SSSEEEEEESS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHH---HH-----HHhhhccC-----CCceEEEEeec-ccccccccccccc
Confidence 78999999999999999999999999999988 66 66655442 22378889998 7888888877776
Q ss_pred cCCC
Q psy7691 144 ASQP 147 (165)
Q Consensus 144 ~~~~ 147 (165)
....
T Consensus 67 ~~~~ 70 (169)
T PF00270_consen 67 FFSN 70 (169)
T ss_dssp HTTT
T ss_pred cccc
Confidence 6554
No 75
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.65 E-value=5.1e-08 Score=91.27 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=62.2
Q ss_pred ccccccCCCcHHHHHHHHhCCCCCC------chHHH-H--------------HHHHHHcCCCeeeecccCCcccceeeec
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEEP------TAIQA-Q--------------GWPIALSGRDMVGIAQTGSGKTLAVINF 97 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~~------t~~Q~-~--------------a~~~~l~G~di~~~a~tgsGKt~~~~~~ 97 (165)
|+.+..-.-++.+...|...|+... ++.++ . |+.++.+|.|+..+. .||||
T Consensus 684 IIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR--------~VIHy 755 (1195)
T PLN03137 684 IIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVR--------FVIHH 755 (1195)
T ss_pred eeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCc--------EEEEc
Confidence 3333444677888888988888652 22222 2 233334444444444 79999
Q ss_pred CCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHH
Q psy7691 98 DYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ 133 (165)
Q Consensus 98 ~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~ 133 (165)
++|.+.+.|+||+||+||+|..+.+++++.+.+...
T Consensus 756 dlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~ 791 (1195)
T PLN03137 756 SLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIR 791 (1195)
T ss_pred CCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHH
Confidence 999999999999999999999999999998765443
No 76
>PRK14701 reverse gyrase; Provisional
Probab=98.64 E-value=4.9e-08 Score=94.88 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=63.2
Q ss_pred CcHHHHHHHHh-CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEE
Q psy7691 47 FPNAVLQHLKG-QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTF 125 (165)
Q Consensus 47 l~~~l~~~l~~-~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~ 125 (165)
--.++.+.|++ .|| .|+++|..+++.++.|+|++++||||+|||+++. ++ .+... ..|..+++
T Consensus 64 ~~~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~---~~-----al~~~-------~~g~~aLV 127 (1638)
T PRK14701 64 EVEEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGA---FI-----ALFLA-------LKGKKCYI 127 (1638)
T ss_pred HHHHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHH---HH-----HHHHH-------hcCCeEEE
Confidence 34455666776 799 5999999999999999999999999999998433 23 11111 13557889
Q ss_pred ECCCcHHHHHHHHHHHHhcC
Q psy7691 126 FTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 126 ~~p~~~~~~~~i~~~l~~~~ 145 (165)
++|+ ++++.|+.+.+....
T Consensus 128 l~PT-reLa~Qi~~~l~~l~ 146 (1638)
T PRK14701 128 ILPT-TLLVKQTVEKIESFC 146 (1638)
T ss_pred EECH-HHHHHHHHHHHHHHH
Confidence 9999 999999988887744
No 77
>PRK09401 reverse gyrase; Reviewed
Probab=98.64 E-value=6e-08 Score=92.02 Aligned_cols=81 Identities=20% Similarity=0.207 Sum_probs=62.5
Q ss_pred HHHHHHHhC-CCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECC
Q psy7691 50 AVLQHLKGQ-GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTP 128 (165)
Q Consensus 50 ~l~~~l~~~-g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p 128 (165)
+..+.+++. |+ .||++|..++|.++.|.|++++|+||+|||. |. +| ....+.+ .|..+++++|
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~---l~-----~~~~l~~------~g~~alIL~P 131 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FG---LV-----MSLYLAK------KGKKSYIIFP 131 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HH---HH-----HHHHHHh------cCCeEEEEec
Confidence 444456554 78 6999999999999999999999999999996 44 44 2333322 3567899999
Q ss_pred CcHHHHHHHHHHHHhcCCC
Q psy7691 129 NNGKQAKELIAVLTEASQP 147 (165)
Q Consensus 129 ~~~~~~~~i~~~l~~~~~~ 147 (165)
+ ++++.|+.+.++.....
T Consensus 132 T-reLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 132 T-RLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred c-HHHHHHHHHHHHHHhhh
Confidence 9 99999999888876543
No 78
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=5.7e-08 Score=84.19 Aligned_cols=92 Identities=18% Similarity=0.250 Sum_probs=65.1
Q ss_pred ccccccCCCcHHHHHHHHhCCCCCC------ch-HHHHHHH--------------HHHcCCCeeeecccCCcccceeeec
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEEP------TA-IQAQGWP--------------IALSGRDMVGIAQTGSGKTLAVINF 97 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~~------t~-~Q~~a~~--------------~~l~G~di~~~a~tgsGKt~~~~~~ 97 (165)
|+.+.+...++.+...|...|+... ++ ...+... .+.+|.|+..+. .|+||
T Consensus 230 IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~--------~VI~~ 301 (470)
T TIGR00614 230 IIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVR--------FVIHY 301 (470)
T ss_pred EEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccce--------EEEEe
Confidence 3334455778888888888877531 22 2222333 334445554444 89999
Q ss_pred CCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 98 DYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 98 ~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
++|.+.+.|+||+||+||.|..|.+++++.+.+......+.
T Consensus 302 ~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 302 SLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred CCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 99999999999999999999999999999998765444443
No 79
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.63 E-value=6.8e-08 Score=90.44 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=58.7
Q ss_pred HHHHHHHHh-CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEEC
Q psy7691 49 NAVLQHLKG-QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127 (165)
Q Consensus 49 ~~l~~~l~~-~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~ 127 (165)
..+...++. .||..++++|.++|+.++.|+|+++++|||+|||++|. +| .+.+. ..+++++
T Consensus 446 ~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQ---LP-----AL~~~----------GiTLVIS 507 (1195)
T PLN03137 446 KKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQ---LP-----ALICP----------GITLVIS 507 (1195)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHH---HH-----HHHcC----------CcEEEEe
Confidence 344445554 69999999999999999999999999999999999998 88 45432 2468888
Q ss_pred CCcHHHHH-HHHHHHH
Q psy7691 128 PNNGKQAK-ELIAVLT 142 (165)
Q Consensus 128 p~~~~~~~-~i~~~l~ 142 (165)
|+ ++++. |+.++..
T Consensus 508 PL-iSLmqDQV~~L~~ 522 (1195)
T PLN03137 508 PL-VSLIQDQIMNLLQ 522 (1195)
T ss_pred CH-HHHHHHHHHHHHh
Confidence 88 77765 5555543
No 80
>KOG0349|consensus
Probab=98.56 E-value=1.4e-08 Score=86.35 Aligned_cols=58 Identities=31% Similarity=0.361 Sum_probs=56.0
Q ss_pred cccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCC
Q psy7691 40 QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYP 100 (165)
Q Consensus 40 ~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP 100 (165)
..|+++++-+++..+..++.|.-||.+|.++||.++.|-|++..|.||||||.||+ +|
T Consensus 2 ~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~---lp 59 (725)
T KOG0349|consen 2 TAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFC---LP 59 (725)
T ss_pred cchHhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCcccee---hh
Confidence 46899999999999999999999999999999999999999999999999999999 99
No 81
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.52 E-value=1.3e-07 Score=84.42 Aligned_cols=97 Identities=20% Similarity=0.282 Sum_probs=63.9
Q ss_pred ccccccCCCcHHHHHHHHhCCCCC------Cch-HHHHHHHHHHcCC-Cee-eecccCCccc----ceeeecCCCCChhH
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEE------PTA-IQAQGWPIALSGR-DMV-GIAQTGSGKT----LAVINFDYPNSSED 105 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~------~t~-~Q~~a~~~~l~G~-di~-~~a~tgsGKt----~~~~~~~lP~~~~~ 105 (165)
|+.+.+-.-++.+.+.|.+.|+.. .++ ...+....+..|. +++ ++..-|.|=. -.|+|||+|.+.++
T Consensus 240 IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~ 319 (607)
T PRK11057 240 IIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIES 319 (607)
T ss_pred EEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHH
Confidence 333344467778888888877643 122 2233334444443 322 2222234421 27999999999999
Q ss_pred HHHhhccCCCCCCCCceEEEECCCcHHHHH
Q psy7691 106 YIHRIGRTGRCASSGTAYTFFTPNNGKQAK 135 (165)
Q Consensus 106 ~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~ 135 (165)
|+||+||+||.|..|.+++++.|.+.....
T Consensus 320 y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~ 349 (607)
T PRK11057 320 YYQETGRAGRDGLPAEAMLFYDPADMAWLR 349 (607)
T ss_pred HHHHhhhccCCCCCceEEEEeCHHHHHHHH
Confidence 999999999999999999999998654433
No 82
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.50 E-value=2.4e-07 Score=86.21 Aligned_cols=85 Identities=16% Similarity=0.109 Sum_probs=66.1
Q ss_pred CcHHHHHHHHh-CCCCCCchHHHHHHHHHHcC------CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCC
Q psy7691 47 FPNAVLQHLKG-QGFEEPTAIQAQGWPIALSG------RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASS 119 (165)
Q Consensus 47 l~~~l~~~l~~-~g~~~~t~~Q~~a~~~~l~G------~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~ 119 (165)
.+..+.+.+.+ .+|. ||++|..||+.++.+ +|.+++++||+|||.+++ +| .++.+. .
T Consensus 436 ~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val---~a-----~l~al~-------~ 499 (926)
T TIGR00580 436 PDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAM---RA-----AFKAVL-------D 499 (926)
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHH---HH-----HHHHHH-------h
Confidence 34555555555 6995 999999999999875 799999999999999887 66 444442 2
Q ss_pred CceEEEECCCcHHHHHHHHHHHHhcCCCC
Q psy7691 120 GTAYTFFTPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 120 g~~~~~~~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
|..+++++|+ +.++.|..+.+......+
T Consensus 500 g~qvlvLvPT-~~LA~Q~~~~f~~~~~~~ 527 (926)
T TIGR00580 500 GKQVAVLVPT-TLLAQQHFETFKERFANF 527 (926)
T ss_pred CCeEEEEeCc-HHHHHHHHHHHHHHhccC
Confidence 3578999999 899999988887755443
No 83
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.49 E-value=1.2e-07 Score=86.40 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=54.4
Q ss_pred HHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEEC--CCcHHHHHHHHHHHHhcCC
Q psy7691 70 GWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT--PNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 70 a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~--p~~~~~~~~i~~~l~~~~~ 146 (165)
|++.+.+|.|+..+. +|+||++|.+.++|+||+||+||.|+.|.+++++. |.+...+..+.+.++....
T Consensus 335 aTd~lerGIDI~~vd--------~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e 405 (742)
T TIGR03817 335 TTNALELGVDISGLD--------AVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVE 405 (742)
T ss_pred ECchHhccCCccccc--------EEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCc
Confidence 555666777777666 89999999999999999999999999999998886 4455556666666665433
No 84
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.47 E-value=2.8e-07 Score=82.70 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=63.8
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHcC------CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCce
Q psy7691 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSG------RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTA 122 (165)
Q Consensus 49 ~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G------~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~ 122 (165)
..+.+.+...+| .+|+.|.+|++.++.+ ++.+++++||||||++++ +| .++.+. .|..
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~---l~-----il~~~~-------~g~q 286 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAA---LA-----MLAAIE-------AGYQ 286 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHH---HH-----HHHHHH-------cCCc
Confidence 344556777899 5999999999999877 367999999999999887 67 555442 3557
Q ss_pred EEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 123 YTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 123 ~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
+++++|+ +.++.|+.+.+.....
T Consensus 287 vlilaPT-~~LA~Q~~~~~~~l~~ 309 (630)
T TIGR00643 287 VALMAPT-EILAEQHYNSLRNLLA 309 (630)
T ss_pred EEEECCH-HHHHHHHHHHHHHHhc
Confidence 8999999 8899998888776544
No 85
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.47 E-value=2.9e-07 Score=83.33 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=62.9
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHHcC------CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEE
Q psy7691 52 LQHLKGQGFEEPTAIQAQGWPIALSG------RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTF 125 (165)
Q Consensus 52 ~~~l~~~g~~~~t~~Q~~a~~~~l~G------~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~ 125 (165)
.+.+...+|. +|++|.+|++.+..+ +|.+++++||||||++++ +| .++.+. .|..+++
T Consensus 252 ~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~---~~-----il~~~~-------~g~q~li 315 (681)
T PRK10917 252 KKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAA---LA-----ALAAIE-------AGYQAAL 315 (681)
T ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHH---HH-----HHHHHH-------cCCeEEE
Confidence 3345557895 999999999999887 489999999999999988 77 555552 3567899
Q ss_pred ECCCcHHHHHHHHHHHHhcCCC
Q psy7691 126 FTPNNGKQAKELIAVLTEASQP 147 (165)
Q Consensus 126 ~~p~~~~~~~~i~~~l~~~~~~ 147 (165)
++|+ +.++.|+.+.+......
T Consensus 316 laPT-~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 316 MAPT-EILAEQHYENLKKLLEP 336 (681)
T ss_pred Eecc-HHHHHHHHHHHHHHHhh
Confidence 9999 88999888887765433
No 86
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.43 E-value=3.1e-07 Score=81.28 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=72.7
Q ss_pred CCC-ccccccCCCcHHHHHHHHhCCCCCCc------hHHHHHHH-HHHcCC-C-eeeecccCCc--ccc--eeeecCCCC
Q psy7691 36 PCP-TQELTEGCFPNAVLQHLKGQGFEEPT------AIQAQGWP-IALSGR-D-MVGIAQTGSG--KTL--AVINFDYPN 101 (165)
Q Consensus 36 p~~-i~~f~~l~l~~~l~~~l~~~g~~~~t------~~Q~~a~~-~~l~G~-d-i~~~a~tgsG--Kt~--~~~~~~lP~ 101 (165)
..+ |+.+.+-.-.+++.++|...|+.... ...++... .++.+. . ++++-..|.| |.. .|+|||+|.
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~ 309 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG 309 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCC
Confidence 344 66666778999999999999887632 22222222 244443 2 2233444555 332 489999999
Q ss_pred ChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 102 SSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 102 ~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
++++|.|.+||+||+|....+++++.|.+......+.
T Consensus 310 s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i 346 (590)
T COG0514 310 SIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLI 346 (590)
T ss_pred CHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHH
Confidence 9999999999999999999999999999855444443
No 87
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.37 E-value=7.4e-07 Score=84.57 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=62.4
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHcC------CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCce
Q psy7691 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSG------RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTA 122 (165)
Q Consensus 49 ~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G------~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~ 122 (165)
+...+...+..| .||++|.+||+.++.+ +|++++++||+|||..++ .+ ....+ ..|..
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val---~a-----a~~~~-------~~g~q 651 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM---RA-----AFLAV-------ENHKQ 651 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHH---HH-----HHHHH-------HcCCe
Confidence 344555677899 5999999999999887 899999999999998655 33 11112 13567
Q ss_pred EEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 123 YTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 123 ~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
+++++|+ +.++.|+.+.+.....
T Consensus 652 vlvLvPT-~eLA~Q~~~~f~~~~~ 674 (1147)
T PRK10689 652 VAVLVPT-TLLAQQHYDNFRDRFA 674 (1147)
T ss_pred EEEEeCc-HHHHHHHHHHHHHhhc
Confidence 9999999 9999999888876443
No 88
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.30 E-value=8.8e-07 Score=78.81 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=64.6
Q ss_pred ccccccCCCcHHHHHHHHhCCCCC------Cch-HHHHHHHHHHcCC-Ceeee-cccCCccc----ceeeecCCCCChhH
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEE------PTA-IQAQGWPIALSGR-DMVGI-AQTGSGKT----LAVINFDYPNSSED 105 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~------~t~-~Q~~a~~~~l~G~-di~~~-a~tgsGKt----~~~~~~~lP~~~~~ 105 (165)
|+.+.+...++.+.+.|...|+.. .+. ........+..|. +++++ ..-|.|-. -.|+||++|.+.++
T Consensus 228 IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~ 307 (591)
T TIGR01389 228 IIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLES 307 (591)
T ss_pred EEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHH
Confidence 333344567888888888877643 222 2233334455553 43332 22234422 26899999999999
Q ss_pred HHHhhccCCCCCCCCceEEEECCCcHHHHH
Q psy7691 106 YIHRIGRTGRCASSGTAYTFFTPNNGKQAK 135 (165)
Q Consensus 106 ~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~ 135 (165)
|+|++||+||.|..+.+++++.+.+.....
T Consensus 308 y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~ 337 (591)
T TIGR01389 308 YYQEAGRAGRDGLPAEAILLYSPADIALLK 337 (591)
T ss_pred HhhhhccccCCCCCceEEEecCHHHHHHHH
Confidence 999999999999999999998887654433
No 89
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.25 E-value=1.7e-06 Score=77.63 Aligned_cols=69 Identities=28% Similarity=0.245 Sum_probs=57.3
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.|.. |+++|..+++.++.|+ ++.+.||+|||+++. +| .+... ..|..+.+++|+ +.++.|.
T Consensus 100 lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~---lp-----~~~~a-------l~G~~v~VvTpt-reLA~qd 160 (656)
T PRK12898 100 LGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTAT---LP-----AGTAA-------LAGLPVHVITVN-DYLAERD 160 (656)
T ss_pred hCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHH---HH-----HHHHh-------hcCCeEEEEcCc-HHHHHHH
Confidence 4775 8999999999999998 899999999999999 88 34332 245689999999 8999888
Q ss_pred HHHHHhcC
Q psy7691 138 IAVLTEAS 145 (165)
Q Consensus 138 ~~~l~~~~ 145 (165)
.+.+....
T Consensus 161 ae~~~~l~ 168 (656)
T PRK12898 161 AELMRPLY 168 (656)
T ss_pred HHHHHHHH
Confidence 88887643
No 90
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.24 E-value=1.1e-06 Score=78.96 Aligned_cols=91 Identities=21% Similarity=0.225 Sum_probs=64.1
Q ss_pred CCccccc-cCCCcHHHHHHHHhCCCCCCc----hHHHH---------------HHHHHHcCCCee---eecccCCcccce
Q psy7691 37 CPTQELT-EGCFPNAVLQHLKGQGFEEPT----AIQAQ---------------GWPIALSGRDMV---GIAQTGSGKTLA 93 (165)
Q Consensus 37 ~~i~~f~-~l~l~~~l~~~l~~~g~~~~t----~~Q~~---------------a~~~~l~G~di~---~~a~tgsGKt~~ 93 (165)
.|+..|. +..-++.+.+.|...|+.... -.|.+ |++.+.||.||. .+..-| -++
T Consensus 474 ~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~G---GLh 550 (656)
T PRK12898 474 RPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARG---GLH 550 (656)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcC---CCE
Confidence 4555554 457788888889988886522 11222 344445555554 111101 148
Q ss_pred eeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 94 ~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
|+|||+|.+...|+||+||+||.|..|.++.|+++.+
T Consensus 551 VI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 551 VILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 9999999999999999999999999999999999875
No 91
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.16 E-value=2.2e-06 Score=78.42 Aligned_cols=92 Identities=22% Similarity=0.231 Sum_probs=64.5
Q ss_pred CCCcccccc-CCCcHHHHHHHHhCCCCCCch----HHHH---------------HHHHHHcCCCee---eecccCCcccc
Q psy7691 36 PCPTQELTE-GCFPNAVLQHLKGQGFEEPTA----IQAQ---------------GWPIALSGRDMV---GIAQTGSGKTL 92 (165)
Q Consensus 36 p~~i~~f~~-l~l~~~l~~~l~~~g~~~~t~----~Q~~---------------a~~~~l~G~di~---~~a~tgsGKt~ 92 (165)
..|+..|.. ...++.+.+.|.+.|+..-.- .|.+ |++.+.||.|+. .+..-| -+
T Consensus 428 ~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g~VlIATdmAgRG~DI~l~~~V~~~G---GL 504 (790)
T PRK09200 428 GRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGAVTVATNMAGRGTDIKLGEGVHELG---GL 504 (790)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCCeEEEEccchhcCcCCCccccccccc---Cc
Confidence 445556654 567788888898888854210 1222 344455666652 111111 14
Q ss_pred eeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
+|+|||+|.+...|+||+||+||.|..|.+..++++.+
T Consensus 505 ~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 505 AVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred EEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 89999999999999999999999999999999999874
No 92
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.01 E-value=2.8e-05 Score=68.14 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=52.3
Q ss_pred CCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 60 FEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 60 ~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
...|++.|.+|++.++.+.+.+++++||+|||+... .+.+.-... ....+++++|+ ++++.|..+
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~----------~l~~~~~~~----~~~~vLilvpt-~eL~~Q~~~ 176 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQY----------LLSRYYLEN----YEGKVLIIVPT-TSLVTQMID 176 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHH----------HHHHHHHhc----CCCeEEEEECc-HHHHHHHHH
Confidence 346999999999999999999999999999998543 121110111 12268888898 899999988
Q ss_pred HHHhc
Q psy7691 140 VLTEA 144 (165)
Q Consensus 140 ~l~~~ 144 (165)
.+..-
T Consensus 177 ~l~~~ 181 (501)
T PHA02558 177 DFVDY 181 (501)
T ss_pred HHHHh
Confidence 88764
No 93
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=97.96 E-value=1.2e-05 Score=75.07 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=70.4
Q ss_pred CCCcccccc-CCCcHHHHHHHH-hCCCCC------CchHHH-HHHHHHHc---CCCeeeecccC-Ccccc----eeeecC
Q psy7691 36 PCPTQELTE-GCFPNAVLQHLK-GQGFEE------PTAIQA-QGWPIALS---GRDMVGIAQTG-SGKTL----AVINFD 98 (165)
Q Consensus 36 p~~i~~f~~-l~l~~~l~~~l~-~~g~~~------~t~~Q~-~a~~~~l~---G~di~~~a~tg-sGKt~----~~~~~~ 98 (165)
++.++.|.+ ......+.+.|. ..||.. .+..++ +++..+.. +..+++++.-| .|-.+ +++|||
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfD 572 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFD 572 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEec
Confidence 334555554 578888888884 557754 223333 34445544 23455444333 34322 789999
Q ss_pred CCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 99 YPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 99 lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
+|.+++.|.||+||++|.|.++.+.+++...+...-..+.+++..
T Consensus 573 lP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 573 LPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred CCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 999999999999999999999887666665554445556655555
No 94
>KOG0337|consensus
Probab=97.90 E-value=3.7e-06 Score=71.45 Aligned_cols=102 Identities=24% Similarity=0.310 Sum_probs=71.9
Q ss_pred CCccccccC-CCcHHHHHHHHhCCCCCCc----hHHHH-----------------HHHHHHcCCCeeeecccCCccccee
Q psy7691 37 CPTQELTEG-CFPNAVLQHLKGQGFEEPT----AIQAQ-----------------GWPIALSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 37 ~~i~~f~~l-~l~~~l~~~l~~~g~~~~t----~~Q~~-----------------a~~~~l~G~di~~~a~tgsGKt~~~ 94 (165)
+....|... .=.+.+..-+...|+..-. --|.. .++.+.+|.|++.-+ .+
T Consensus 262 ~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplld--------nv 333 (529)
T KOG0337|consen 262 KQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLD--------NV 333 (529)
T ss_pred cceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccc--------cc
Confidence 344455544 4444555557777776421 01111 244556677766666 79
Q ss_pred eecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 95 INFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 95 ~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
+|||+|.+..-|+||+||..|+|+.|.++.++++++..-+.+|.-.+.....
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCcee
Confidence 9999999999999999999999999999999999987777777776665433
No 95
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.85 E-value=4.2e-05 Score=56.65 Aligned_cols=75 Identities=32% Similarity=0.443 Sum_probs=53.7
Q ss_pred hCCCCCCchHHHHHHHHHHcC-CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHH
Q psy7691 57 GQGFEEPTAIQAQGWPIALSG-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAK 135 (165)
Q Consensus 57 ~~g~~~~t~~Q~~a~~~~l~G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~ 135 (165)
..++..+++.|.++++.++.+ ..++..+++|+|||..+. .+ ..+...+. ....+++++|+ ..++.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~---~~-----~~~~~~~~-----~~~~~l~~~p~-~~~~~ 68 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAAL---LP-----ALEALKRG-----KGKRVLVLVPT-RELAE 68 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHH---HH-----HHHHhccc-----CCCcEEEEeCC-HHHHH
Confidence 346778999999999999998 999999999999999665 33 23322221 13468888887 66666
Q ss_pred HHHHHHHhcC
Q psy7691 136 ELIAVLTEAS 145 (165)
Q Consensus 136 ~i~~~l~~~~ 145 (165)
++.+.+....
T Consensus 69 ~~~~~~~~~~ 78 (201)
T smart00487 69 QWAEELKKLG 78 (201)
T ss_pred HHHHHHHHHh
Confidence 6666555443
No 96
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=97.85 E-value=5.2e-05 Score=67.00 Aligned_cols=89 Identities=27% Similarity=0.317 Sum_probs=69.1
Q ss_pred cccccCCCcHHHHHHHHhCCCCCCchHHHHHHHH-HHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCC
Q psy7691 40 QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI-ALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCAS 118 (165)
Q Consensus 40 ~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~-~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~ 118 (165)
...+++.+|+.+.+-|+..|+....|+|..|+.. ++.|.|.+++++|+||||+.-=...+| +. -.
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~--------~~------l~ 259 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIP--------RL------LS 259 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcH--------HH------Hh
Confidence 4667899999999999999999999999999887 479999999999999999832211122 22 23
Q ss_pred CCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 119 SGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 119 ~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
.|.-.+++.|. ..+++|-.+-+..
T Consensus 260 ~g~KmlfLvPL-VALANQKy~dF~~ 283 (830)
T COG1202 260 GGKKMLFLVPL-VALANQKYEDFKE 283 (830)
T ss_pred CCCeEEEEehh-HHhhcchHHHHHH
Confidence 45578999998 8888776554443
No 97
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.80 E-value=5.9e-05 Score=68.33 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHcCCCeeeecccCCcccceee------ecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 65 AIQAQGWPIALSGRDMVGIAQTGSGKTLAVI------NFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 65 ~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~------~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
.+|.+.++.++.|+|++++|+||||||.++- +|-+| .++.+.+-. ....+..++++.|+ ++++.|+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~-----~l~~l~~~~-~~~~~~~ilvt~Pr-reLa~qi~ 239 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFG-----GFDNLDKID-PNFIERPIVLSLPR-VALVRLHS 239 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccc-----hhhhhhhcc-cccCCcEEEEECcH-HHHHHHHH
Confidence 3899999999999999999999999999731 12234 233322110 01234478888888 99999988
Q ss_pred HHHHh
Q psy7691 139 AVLTE 143 (165)
Q Consensus 139 ~~l~~ 143 (165)
..+.+
T Consensus 240 ~~i~~ 244 (675)
T PHA02653 240 ITLLK 244 (675)
T ss_pred HHHHH
Confidence 77754
No 98
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=97.76 E-value=6.5e-05 Score=68.36 Aligned_cols=94 Identities=21% Similarity=0.155 Sum_probs=64.4
Q ss_pred CCCcccccc-CCCcHHHHHHHHhCCCCCCc--hHHH--H---------------HHHHHHcCCCeeeecccCCcccceee
Q psy7691 36 PCPTQELTE-GCFPNAVLQHLKGQGFEEPT--AIQA--Q---------------GWPIALSGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 36 p~~i~~f~~-l~l~~~l~~~l~~~g~~~~t--~~Q~--~---------------a~~~~l~G~di~~~a~tgsGKt~~~~ 95 (165)
..|+..|.. ..-.+.+.+.|.+.|+..-. .-|. + |++.+.||.||..-.-...| -++|+
T Consensus 405 grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~G-Gl~VI 483 (745)
T TIGR00963 405 GQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELG-GLYVI 483 (745)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCChHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcC-CcEEE
Confidence 456666654 46677888888888875521 1122 1 33444455555430000000 24899
Q ss_pred ecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 96 NFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 96 ~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
+|++|.+...|.|+.||+||.|..|.+..+++..+
T Consensus 484 ~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 484 GTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred ecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 99999999999999999999999999999999885
No 99
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=97.75 E-value=6.5e-05 Score=67.90 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=66.5
Q ss_pred ccCCCcHHHHHHHHhCCCCC------Cch-HHHHHHH--------------HHHcCCCeeeecccCCcccceeeecCC--
Q psy7691 43 TEGCFPNAVLQHLKGQGFEE------PTA-IQAQGWP--------------IALSGRDMVGIAQTGSGKTLAVINFDY-- 99 (165)
Q Consensus 43 ~~l~l~~~l~~~l~~~g~~~------~t~-~Q~~a~~--------------~~l~G~di~~~a~tgsGKt~~~~~~~l-- 99 (165)
.+....+.+.+.|.+.|+.. ... ....++. .+.+|.|+..+. .++++|.
T Consensus 454 ~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~--------lVii~d~ei 525 (652)
T PRK05298 454 LTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVS--------LVAILDADK 525 (652)
T ss_pred CCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCc--------EEEEeCCcc
Confidence 34567778888888887732 111 1122222 333444444443 5777775
Q ss_pred ---CCChhHHHHhhccCCCCCCCCceEEEECCC---------cHHHHHHHHHHHHhcCCCCChHH
Q psy7691 100 ---PNSSEDYIHRIGRTGRCASSGTAYTFFTPN---------NGKQAKELIAVLTEASQPIPPQL 152 (165)
Q Consensus 100 ---P~~~~~~i~r~gr~~r~~~~g~~~~~~~p~---------~~~~~~~i~~~l~~~~~~~p~~~ 152 (165)
|.+..+|+||+||+||. ..|.+++++... +.....++...++....-+|...
T Consensus 526 fG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 526 EGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred cccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 77899999999999996 789999999843 34556677777777777777554
No 100
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=97.71 E-value=5.1e-05 Score=69.66 Aligned_cols=68 Identities=28% Similarity=0.406 Sum_probs=54.7
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.|.. |+++|..+.+.++.|. ++.+.||+|||+++. +|. |++.. .|..+.+++|+ +.+|.|.
T Consensus 75 ~g~~-p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~---lp~----~l~al--------~G~~v~VvTpt-~~LA~qd 135 (790)
T PRK09200 75 LGMR-PYDVQLIGALVLHEGN--IAEMQTGEGKTLTAT---MPL----YLNAL--------EGKGVHLITVN-DYLAKRD 135 (790)
T ss_pred hCCC-CchHHHHhHHHHcCCc--eeeecCCCcchHHHH---HHH----HHHHH--------cCCCeEEEeCC-HHHHHHH
Confidence 4774 9999999999999987 899999999999998 882 33333 35578999999 8888887
Q ss_pred HHHHHhc
Q psy7691 138 IAVLTEA 144 (165)
Q Consensus 138 ~~~l~~~ 144 (165)
.+.+...
T Consensus 136 ~e~~~~l 142 (790)
T PRK09200 136 AEEMGQV 142 (790)
T ss_pred HHHHHHH
Confidence 7776654
No 101
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.70 E-value=8.2e-05 Score=69.07 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=55.5
Q ss_pred CcHHHHHHHHhCCCCCCchHHHHHHH----HHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCce
Q psy7691 47 FPNAVLQHLKGQGFEEPTAIQAQGWP----IALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTA 122 (165)
Q Consensus 47 l~~~l~~~l~~~g~~~~t~~Q~~a~~----~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~ 122 (165)
+.+...+.+...||. +.+.|.+.+. .+..|.++++.|+||+|||++|+ +| .+...- .+..
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayL---lp-----~~~~~~-------~~~~ 294 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYL---LP-----ALYYAI-------TEKP 294 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHH---HH-----HHHHhc-------CCCe
Confidence 344677778888997 7899997555 45678899999999999999999 88 444331 1236
Q ss_pred EEEECCCcHHHHHHHH
Q psy7691 123 YTFFTPNNGKQAKELI 138 (165)
Q Consensus 123 ~~~~~p~~~~~~~~i~ 138 (165)
+++.+|+ +.+..|+.
T Consensus 295 vvi~t~t-~~Lq~Ql~ 309 (850)
T TIGR01407 295 VVISTNT-KVLQSQLL 309 (850)
T ss_pred EEEEeCc-HHHHHHHH
Confidence 8888888 66666653
No 102
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.69 E-value=7.5e-05 Score=69.54 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCCcccccc-CCCcHHHHHHHHhCCCCCC--chHH--HH---------------HHHHHHcCCCeee---ecccCCcccc
Q psy7691 36 PCPTQELTE-GCFPNAVLQHLKGQGFEEP--TAIQ--AQ---------------GWPIALSGRDMVG---IAQTGSGKTL 92 (165)
Q Consensus 36 p~~i~~f~~-l~l~~~l~~~l~~~g~~~~--t~~Q--~~---------------a~~~~l~G~di~~---~a~tgsGKt~ 92 (165)
..|+..|.. ...++.+.+.|...|+..- ..-| .+ |++.+.||.||.. +..-| -+
T Consensus 598 grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLnakq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vG---GL 674 (1025)
T PRK12900 598 GQPVLVGTASVEVSETLSRMLRAKRIAHNVLNAKQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELG---GL 674 (1025)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCCceeecCCHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhC---Cc
Confidence 456666654 4677888888888887642 1112 22 3444455666541 11000 24
Q ss_pred eeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHH----HHHHHHHHHhcCC
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ----AKELIAVLTEASQ 146 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~----~~~i~~~l~~~~~ 146 (165)
++++++.|.+...|.|+.||+||.|..|.+..|++..+.-+ ...+.+++...+.
T Consensus 675 ~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~~ 732 (1025)
T PRK12900 675 FILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLGH 732 (1025)
T ss_pred eeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcCC
Confidence 78999999999999999999999999999999999885322 1256666665544
No 103
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.69 E-value=5e-05 Score=69.34 Aligned_cols=107 Identities=18% Similarity=0.162 Sum_probs=68.6
Q ss_pred CCCcccccc-CCCcHHHHHHHHhCCCCCCc----hHHHH---------------HHHHHHcCCCee-eecccCCccccee
Q psy7691 36 PCPTQELTE-GCFPNAVLQHLKGQGFEEPT----AIQAQ---------------GWPIALSGRDMV-GIAQTGSGKTLAV 94 (165)
Q Consensus 36 p~~i~~f~~-l~l~~~l~~~l~~~g~~~~t----~~Q~~---------------a~~~~l~G~di~-~~a~tgsGKt~~~ 94 (165)
..|+..|.. ....+.+.+.|.+.|+..-. -.|.+ |++.+.||.|+. +-.-...|---.+
T Consensus 424 ~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g~VlIATdmAgRGtDI~l~~~v~~~GGL~vI 503 (762)
T TIGR03714 424 GQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATSMAGRGTDIKLGKGVAELGGLAVI 503 (762)
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCCeEEEEccccccccCCCCCccccccCCeEEE
Confidence 345555544 46777788888888875421 12322 344555666664 1111112233368
Q ss_pred eecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHH-----HHHHHHHHhc
Q psy7691 95 INFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-----KELIAVLTEA 144 (165)
Q Consensus 95 ~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~-----~~i~~~l~~~ 144 (165)
++|++|...++ +||.||+||.|..|.+..++++.+ .++ ..+.+++...
T Consensus 504 it~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD-~l~~~~~~~~~~~~~~~~ 556 (762)
T TIGR03714 504 GTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLED-DLIKRWSPSWLKKYYKKY 556 (762)
T ss_pred EecCCCCcHHH-HHhhhcccCCCCceeEEEEEccch-hhhhhcchHHHHHHHHHc
Confidence 89999988777 999999999999999999999875 332 3555555543
No 104
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.66 E-value=0.00014 Score=66.10 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=51.3
Q ss_pred CCchHHHHHHHHHHcC---CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSG---RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G---~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
.+|+.|.++++.+..+ .+++..++||||||.+++ .+ ..+.+. .|..++++.|+ .+++.|+.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l---~~-----i~~~l~-------~g~~vLvLvPt-~~L~~Q~~ 207 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYL---QA-----IAEVLA-------QGKQALVLVPE-IALTPQML 207 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHH---HH-----HHHHHH-------cCCeEEEEeCc-HHHHHHHH
Confidence 3789999999999874 789999999999999876 33 222221 23468889998 88888888
Q ss_pred HHHHhc
Q psy7691 139 AVLTEA 144 (165)
Q Consensus 139 ~~l~~~ 144 (165)
+.+...
T Consensus 208 ~~l~~~ 213 (679)
T PRK05580 208 ARFRAR 213 (679)
T ss_pred HHHHHH
Confidence 887653
No 105
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=97.62 E-value=0.00017 Score=70.03 Aligned_cols=55 Identities=27% Similarity=0.356 Sum_probs=44.0
Q ss_pred HHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHH
Q psy7691 69 QGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGK 132 (165)
Q Consensus 69 ~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~ 132 (165)
.|++.+..|.|+-.+. .||||+.|.++.+|+||+||+||. ..+.+..++.|.++.
T Consensus 332 VATssLELGIDIg~VD--------lVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~ 386 (1490)
T PRK09751 332 VATSSLELGIDMGAVD--------LVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRR 386 (1490)
T ss_pred EeCcHHHccCCcccCC--------EEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHH
Confidence 3666677788877666 899999999999999999999997 456666667777654
No 106
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=97.62 E-value=7e-05 Score=68.14 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=57.4
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.|.. |+++|..+.+.++.|. ++.++||+|||+++. +|. |++.+. |..+.+++|+ +.+|.|.
T Consensus 53 lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~---lpa----~l~aL~--------G~~V~VvTpt-~~LA~qd 113 (745)
T TIGR00963 53 LGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTAT---LPA----YLNALT--------GKGVHVVTVN-DYLAQRD 113 (745)
T ss_pred hCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHH---HHH----HHHHHh--------CCCEEEEcCC-HHHHHHH
Confidence 4775 8999999998888886 899999999999988 883 455552 2247899999 8899988
Q ss_pred HHHHHhcCCCC
Q psy7691 138 IAVLTEASQPI 148 (165)
Q Consensus 138 ~~~l~~~~~~~ 148 (165)
.+.+......+
T Consensus 114 ae~~~~l~~~L 124 (745)
T TIGR00963 114 AEWMGQVYRFL 124 (745)
T ss_pred HHHHHHHhccC
Confidence 88887765543
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=97.53 E-value=0.00019 Score=64.87 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=56.4
Q ss_pred ccCCCcHHHHHHHHhCCCCCCc------hH-HHHHHH--------------HHHcCCCeeeecccCCcccceeeecC---
Q psy7691 43 TEGCFPNAVLQHLKGQGFEEPT------AI-QAQGWP--------------IALSGRDMVGIAQTGSGKTLAVINFD--- 98 (165)
Q Consensus 43 ~~l~l~~~l~~~l~~~g~~~~t------~~-Q~~a~~--------------~~l~G~di~~~a~tgsGKt~~~~~~~--- 98 (165)
.+....+.+.+.|.+.|+.... .. ....+. .+.+|.|+..+. +++++|
T Consensus 450 ~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~--------lVvi~Dadi 521 (655)
T TIGR00631 450 LTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVS--------LVAILDADK 521 (655)
T ss_pred CCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCc--------EEEEeCccc
Confidence 3456778888888888874311 11 112222 233444444333 677888
Q ss_pred --CCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 99 --YPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 99 --lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.|.+..+|+||+||+||. ..|.+++++...+..+...|
T Consensus 522 fG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 522 EGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred ccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 799999999999999998 68999988887664444333
No 108
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.53 E-value=0.00011 Score=67.52 Aligned_cols=83 Identities=27% Similarity=0.323 Sum_probs=64.0
Q ss_pred CCCcHHHHHHHHhCCCCCCchHHHHHHHHH-HcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceE
Q psy7691 45 GCFPNAVLQHLKGQGFEEPTAIQAQGWPIA-LSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAY 123 (165)
Q Consensus 45 l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~-l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~ 123 (165)
+.+++.+...+...|+....+-|+.++... ..|.|+++++|||||||+... |- .++.+.+. +..+
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~---la-----i~~~l~~~------~~k~ 79 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIAL---LA-----ILSTLLEG------GGKV 79 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHH---HH-----HHHHHHhc------CCcE
Confidence 357888888888889988888887777665 455999999999999999655 33 45555442 4568
Q ss_pred EEECCCcHHHHHHHHHHHH
Q psy7691 124 TFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 124 ~~~~p~~~~~~~~i~~~l~ 142 (165)
++++|. +.++.+..+-+.
T Consensus 80 vYivPl-kALa~Ek~~~~~ 97 (766)
T COG1204 80 VYIVPL-KALAEEKYEEFS 97 (766)
T ss_pred EEEeCh-HHHHHHHHHHhh
Confidence 899999 888888887776
No 109
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.46 E-value=0.00015 Score=60.98 Aligned_cols=55 Identities=24% Similarity=0.296 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCC--eeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 66 IQAQGWPIALSGRD--MVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 66 ~Q~~a~~~~l~G~d--i~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
.|.++++.+..+.+ ++++|+||||||.+++ +| .++. +...+++.|+ +.++.+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~---~~-----~l~~----------~~~~~~~~P~-~aL~~~~~~ 57 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWL---TP-----LLHG----------ENDTIALYPT-NALIEDQTE 57 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHH---HH-----HHHc----------CCCEEEEeCh-HHHHHHHHH
Confidence 48999999999975 6789999999999988 77 4431 1135788888 555554333
No 110
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.35 E-value=0.00017 Score=60.04 Aligned_cols=52 Identities=23% Similarity=0.173 Sum_probs=39.5
Q ss_pred CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 79 DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 79 di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
|++++++||||||++++ +| .++.+.+ ..+..++++.|+ +.++.|+.+.+...
T Consensus 1 ~vvi~apTGsGKT~~~~---~~-----~l~~~~~-----~~~~~ii~v~P~-~~L~~q~~~~l~~~ 52 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAAL---LW-----ALHSIKS-----QKADRVIIALPT-RATINAMYRRAKEL 52 (358)
T ss_pred CEEEEeCCCCCHHHHHH---HH-----HHHHHhh-----CCCCeEEEEeeh-HHHHHHHHHHHHHH
Confidence 68899999999999988 66 5555432 233467888898 88888888777665
No 111
>KOG0349|consensus
Probab=97.35 E-value=9.8e-05 Score=63.43 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=67.2
Q ss_pred HHHHHHhhcCcEEecCCCCCCcccc-ccCCCcHHHHHHHHhCCCCC---------CchHHH---------------HHHH
Q psy7691 18 EVEAFRQKKEITVKGNNIPCPTQEL-TEGCFPNAVLQHLKGQGFEE---------PTAIQA---------------QGWP 72 (165)
Q Consensus 18 ~~~~~~~~~~i~~~~~~~p~~i~~f-~~l~l~~~l~~~l~~~g~~~---------~t~~Q~---------------~a~~ 72 (165)
.+..++....+.-.....-..-+.| .+..-|+.+-+.+.+.|-.. ..|..+ .|++
T Consensus 487 a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictd 566 (725)
T KOG0349|consen 487 ATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTD 566 (725)
T ss_pred hhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEeh
Confidence 3444444444333332222233344 44566777878777765422 112111 2677
Q ss_pred HHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECC
Q psy7691 73 IALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTP 128 (165)
Q Consensus 73 ~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p 128 (165)
.+.+|.||-+.- .+||.-||.+..+|+|||||-||+.+-|.+++++..
T Consensus 567 vaargldi~g~p--------~~invtlpd~k~nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 567 VAARGLDITGLP--------FMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred hhhccccccCCc--------eEEEEecCcccchhhhhhhccchhhhcceeEEEeec
Confidence 778888876655 789999999999999999999999999999988763
No 112
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.34 E-value=0.00035 Score=51.77 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=47.6
Q ss_pred CchHHHHHHHHHHc-------CCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHH
Q psy7691 63 PTAIQAQGWPIALS-------GRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAK 135 (165)
Q Consensus 63 ~t~~Q~~a~~~~l~-------G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~ 135 (165)
+.+.|.+|+..+.. ...++..++||+|||...+. ++.++.+ .+++++|+ ..++.
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~---------~~~~l~~---------~~l~~~p~-~~l~~ 64 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALA---------LILELAR---------KVLIVAPN-ISLLE 64 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH---------HHHHHHC---------EEEEEESS-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhh---------hhhcccc---------ceeEecCH-HHHHH
Confidence 67889999988873 68899999999999997651 4555654 67888888 78888
Q ss_pred HHHHHHH
Q psy7691 136 ELIAVLT 142 (165)
Q Consensus 136 ~i~~~l~ 142 (165)
|..+.+.
T Consensus 65 Q~~~~~~ 71 (184)
T PF04851_consen 65 QWYDEFD 71 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888773
No 113
>KOG0351|consensus
Probab=97.32 E-value=0.0009 Score=62.63 Aligned_cols=94 Identities=19% Similarity=0.150 Sum_probs=64.8
Q ss_pred ccccccCCCcHHHHHHHHhCCCCC------CchHHHHHHHH-HHcCCCeeeec--ccCCcc----cceeeecCCCCChhH
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEE------PTAIQAQGWPI-ALSGRDMVGIA--QTGSGK----TLAVINFDYPNSSED 105 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~------~t~~Q~~a~~~-~l~G~di~~~a--~tgsGK----t~~~~~~~lP~~~~~ 105 (165)
|+..-....++.+...|.+.|... +.+-+++.+.. ++++.=-+++| ..|.|- +-+|+||.+|.+.+.
T Consensus 489 IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~ 568 (941)
T KOG0351|consen 489 IIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEG 568 (941)
T ss_pred EEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHH
Confidence 445556688999999998888543 33444443332 33443212222 233331 227899999999999
Q ss_pred HHHhhccCCCCCCCCceEEEECCCcHH
Q psy7691 106 YIHRIGRTGRCASSGTAYTFFTPNNGK 132 (165)
Q Consensus 106 ~i~r~gr~~r~~~~g~~~~~~~p~~~~ 132 (165)
|.|.+||+||+|....+++++.+.+..
T Consensus 569 YYQE~GRAGRDG~~s~C~l~y~~~D~~ 595 (941)
T KOG0351|consen 569 YYQEAGRAGRDGLPSSCVLLYGYADIS 595 (941)
T ss_pred HHHhccccCcCCCcceeEEecchhHHH
Confidence 999999999999999999999988543
No 114
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.28 E-value=0.00048 Score=56.38 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=46.0
Q ss_pred CchHHHH----HHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 63 PTAIQAQ----GWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 63 ~t~~Q~~----a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
|.+.|.+ ....+..|.++++.||||+|||++++ +|. ..|....+.. ..+..+.+.+++ ..+..+..
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L---~~a--l~~~~~~~~~----~~~~kvi~~t~T-~~~~~q~i 78 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLL---CLT--LTWLRSFPER----IQKIKLIYLSRT-VSEIEKRL 78 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHH---HHH--HHHHHhCccc----ccccceeEEecc-HHHHHHHH
Confidence 5888887 45556788999999999999999999 772 1133222211 123467777776 44555554
Q ss_pred HHHHhc
Q psy7691 139 AVLTEA 144 (165)
Q Consensus 139 ~~l~~~ 144 (165)
..++..
T Consensus 79 ~~l~~~ 84 (289)
T smart00488 79 EELRKL 84 (289)
T ss_pred HHHHhc
Confidence 444443
No 115
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.28 E-value=0.00048 Score=56.38 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=46.0
Q ss_pred CchHHHH----HHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 63 PTAIQAQ----GWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 63 ~t~~Q~~----a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
|.+.|.+ ....+..|.++++.||||+|||++++ +|. ..|....+.. ..+..+.+.+++ ..+..+..
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L---~~a--l~~~~~~~~~----~~~~kvi~~t~T-~~~~~q~i 78 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLL---CLT--LTWLRSFPER----IQKIKLIYLSRT-VSEIEKRL 78 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHH---HHH--HHHHHhCccc----ccccceeEEecc-HHHHHHHH
Confidence 5888887 45556788999999999999999999 772 1133222211 123467777776 44555554
Q ss_pred HHHHhc
Q psy7691 139 AVLTEA 144 (165)
Q Consensus 139 ~~l~~~ 144 (165)
..++..
T Consensus 79 ~~l~~~ 84 (289)
T smart00489 79 EELRKL 84 (289)
T ss_pred HHHHhc
Confidence 444443
No 116
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.27 E-value=0.00055 Score=63.90 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=33.8
Q ss_pred HHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCC-CCceEEEEC
Q psy7691 72 PIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCAS-SGTAYTFFT 127 (165)
Q Consensus 72 ~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~-~g~~~~~~~ 127 (165)
+.+.+|.|+..+. .|++|+.|.+..+|+||+||+||.+. .+...++..
T Consensus 348 s~Le~GIDip~Vd--------~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 348 TSLELGIDIGYID--------LVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred ChHHhcCCCCCCc--------EEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 3344455554444 89999999999999999999998743 344444443
No 117
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.26 E-value=0.00036 Score=63.87 Aligned_cols=68 Identities=28% Similarity=0.372 Sum_probs=51.0
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.|. .|+++|..+...+..| .++..+||+|||+++. +|. |++-. + |..+.+++|+ +.++.|.
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~---Lpa----~l~aL--~------g~~V~VVTpn-~yLA~Rd 127 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTAT---MPL----YLNAL--T------GKGAMLVTTN-DYLAKRD 127 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHH---HHH----HHHhh--c------CCceEEeCCC-HHHHHHH
Confidence 466 4888888887777777 5889999999999999 882 44433 2 2348899999 8888888
Q ss_pred HHHHHhc
Q psy7691 138 IAVLTEA 144 (165)
Q Consensus 138 ~~~l~~~ 144 (165)
.+.+...
T Consensus 128 ae~m~~l 134 (762)
T TIGR03714 128 AEEMGPV 134 (762)
T ss_pred HHHHHHH
Confidence 7777443
No 118
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=97.18 E-value=0.0023 Score=58.98 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=68.3
Q ss_pred CCCcccccc-CCCcHHHHHHHHhCCCCCCc----hHHHH---------------HHHHHHcCCCee---eecccCCcccc
Q psy7691 36 PCPTQELTE-GCFPNAVLQHLKGQGFEEPT----AIQAQ---------------GWPIALSGRDMV---GIAQTGSGKTL 92 (165)
Q Consensus 36 p~~i~~f~~-l~l~~~l~~~l~~~g~~~~t----~~Q~~---------------a~~~~l~G~di~---~~a~tgsGKt~ 92 (165)
..|+..|.. ..-.+.+.+.|.+.|+..-. -.|.+ |+..+-||.||. .+..-| -+
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~VtIATnmAGRGtDI~l~~~V~~~G---GL 516 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPGVKELG---GL 516 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCceEEEEeccccCCCCCCCCcchhhhC---Cc
Confidence 456556654 46677888888888875421 12333 233334555542 111111 24
Q ss_pred eeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHH----HHHHHHHHHh
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ----AKELIAVLTE 143 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~----~~~i~~~l~~ 143 (165)
+|+++++|.+...|.|+.||+||.|..|.+..+++..+.-+ ...+.+++..
T Consensus 517 hVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~~~f~~~~~~~~~~~ 571 (796)
T PRK12906 517 AVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDR 571 (796)
T ss_pred EEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHHHhhCcHHHHHHHHH
Confidence 89999999999999999999999999999999999885222 1245555544
No 119
>PRK13766 Hef nuclease; Provisional
Probab=97.16 E-value=0.0011 Score=60.92 Aligned_cols=93 Identities=18% Similarity=0.180 Sum_probs=61.7
Q ss_pred CCccccccC-CCcHHHHHHHHhCCCCC--------------Cc-hHHHHHHHHHHcC-CCeeeecccCC-c----cccee
Q psy7691 37 CPTQELTEG-CFPNAVLQHLKGQGFEE--------------PT-AIQAQGWPIALSG-RDMVGIAQTGS-G----KTLAV 94 (165)
Q Consensus 37 ~~i~~f~~l-~l~~~l~~~l~~~g~~~--------------~t-~~Q~~a~~~~l~G-~di~~~a~tgs-G----Kt~~~ 94 (165)
..++.|.+. ..+..+.+.|...|+.. .+ ..|..++..+..| .++++....++ | ..-.+
T Consensus 366 ~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~V 445 (773)
T PRK13766 366 SRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLV 445 (773)
T ss_pred CeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEE
Confidence 456677654 68888888888777642 12 2344455555555 34443333222 3 22379
Q ss_pred eecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 95 INFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 95 ~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
++||.|.+...|+||+||+||.+. |.++.+++..+
T Consensus 446 I~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 446 IFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred EEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 999999999999999999999866 66777776555
No 120
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=97.15 E-value=0.00057 Score=61.54 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=33.7
Q ss_pred eeeecCCCCC-hhHHHHhhccCCCCCCCCceEEEE-CCCcHHHHHHH
Q psy7691 93 AVINFDYPNS-SEDYIHRIGRTGRCASSGTAYTFF-TPNNGKQAKEL 137 (165)
Q Consensus 93 ~~~~~~lP~~-~~~~i~r~gr~~r~~~~g~~~~~~-~p~~~~~~~~i 137 (165)
.+++|+.|.. ...|.|+.||+||.|..|.|+++. .|.......++
T Consensus 529 ~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl 575 (630)
T TIGR00643 529 VMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRL 575 (630)
T ss_pred EEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHH
Confidence 6888999864 566777999999999999999998 44433333333
No 121
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=97.13 E-value=0.00017 Score=70.12 Aligned_cols=53 Identities=28% Similarity=0.325 Sum_probs=41.0
Q ss_pred eecccCCcccceeeecCCCCChhHHHHhhccCCC------CCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 82 GIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGR------CASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 82 ~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r------~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
++|+||||||++++ || .++++-+... ....+..+++++|+ ++++.|+.+.++.
T Consensus 1 V~APTGSGKTLAA~---Lp-----aL~~Ll~~~~~~~~~~~~~~~~raLYISPL-KALa~Dv~~~L~~ 59 (1490)
T PRK09751 1 VIAPTGSGKTLAAF---LY-----ALDRLFREGGEDTREAHKRKTSRILYISPI-KALGTDVQRNLQI 59 (1490)
T ss_pred CcCCCCcHHHHHHH---HH-----HHHHHHhcccccccccccCCCCEEEEEeCh-HHHHHHHHHHHHH
Confidence 47999999999999 89 7777644321 11346789999999 9999999988765
No 122
>KOG0952|consensus
Probab=97.13 E-value=0.00053 Score=64.04 Aligned_cols=81 Identities=27% Similarity=0.389 Sum_probs=60.5
Q ss_pred CCCCCCchHHHHHHHHHHcC-CCeeeecccCCcccceeeecCCCCChhHHHHhhcc---CCCCCCCCceEEEECCCcHHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSG-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGR---TGRCASSGTAYTFFTPNNGKQ 133 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr---~~r~~~~g~~~~~~~p~~~~~ 133 (165)
.+|+....+|.+++|.+... .+.++|||||+|||..+. |- +++-+.- .+--.+.+.-+.+++|. +.+
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~---L~-----ILr~ik~~~~~~~i~k~~fKiVYIaPm-KAL 176 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAE---LC-----ILRTIKEHEEQGDIAKDDFKIVYIAPM-KAL 176 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHH---HH-----HHHHHHhhccccccccCCceEEEEech-HHH
Confidence 37888889999999998765 689999999999999776 44 4544421 12223566789999999 888
Q ss_pred HHHHHHHHHhcCCC
Q psy7691 134 AKELIAVLTEASQP 147 (165)
Q Consensus 134 ~~~i~~~l~~~~~~ 147 (165)
+..+.+...+...+
T Consensus 177 a~Em~~~~~kkl~~ 190 (1230)
T KOG0952|consen 177 AAEMVDKFSKKLAP 190 (1230)
T ss_pred HHHHHHHHhhhccc
Confidence 88888777665543
No 123
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.10 E-value=0.0011 Score=60.34 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=30.0
Q ss_pred eeeecCCCCC-hhHHHHhhccCCCCCCCCceEEEEC
Q psy7691 93 AVINFDYPNS-SEDYIHRIGRTGRCASSGTAYTFFT 127 (165)
Q Consensus 93 ~~~~~~lP~~-~~~~i~r~gr~~r~~~~g~~~~~~~ 127 (165)
.+++|+.|.. ...|.|+.||+||.|..|.|+++..
T Consensus 552 ~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 552 VMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 6889999974 5566669999999999999999995
No 124
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=97.10 E-value=0.00017 Score=46.85 Aligned_cols=25 Identities=56% Similarity=0.898 Sum_probs=23.5
Q ss_pred eeeecCCCCChhHHHHhhccCCCCC
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCA 117 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~ 117 (165)
.++.|++|.+..+|.|++||.+|.|
T Consensus 54 ~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 54 HVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp EEEESSSESSHHHHHHHHTTSSTTT
T ss_pred cccccccCCCHHHHHHHhhcCCCCC
Confidence 7899999999999999999999976
No 125
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.09 E-value=0.00051 Score=62.37 Aligned_cols=49 Identities=27% Similarity=0.308 Sum_probs=37.8
Q ss_pred HHHcCCCeeeecccCCcccceeeecC---CCC---------ChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 73 IALSGRDMVGIAQTGSGKTLAVINFD---YPN---------SSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 73 ~~l~G~di~~~a~tgsGKt~~~~~~~---lP~---------~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
.+.+|.|+..+. +|++++ .|. +..+|+||.||+||. +.|.++.++++.+
T Consensus 455 IAERGIDIp~V~--------~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 455 YLESSVTIRNAT--------HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred hhhccccccCee--------EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 334455555444 789998 665 677999999999999 7899999998664
No 126
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.07 E-value=0.00083 Score=62.29 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=50.1
Q ss_pred HhCCCCCCchHHHHHHH----HHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcH
Q psy7691 56 KGQGFEEPTAIQAQGWP----IALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNG 131 (165)
Q Consensus 56 ~~~g~~~~t~~Q~~a~~----~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~ 131 (165)
..-||. +.+.|.+-.. .+..|.++++.|+||+|||++|+ +| ++... .+..+++.+|+ +
T Consensus 240 ~~~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayl---lp-----~l~~~--------~~~~vvI~t~T-~ 301 (820)
T PRK07246 240 ALLGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYL---LP-----LLAQS--------DQRQIIVSVPT-K 301 (820)
T ss_pred ccCCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHH---HH-----HHHhc--------CCCcEEEEeCc-H
Confidence 334675 6777876333 23566889999999999999999 99 66643 23568888998 8
Q ss_pred HHHHHHH-HHHHh
Q psy7691 132 KQAKELI-AVLTE 143 (165)
Q Consensus 132 ~~~~~i~-~~l~~ 143 (165)
++..|+. +-+..
T Consensus 302 ~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 302 ILQDQIMAEEVKA 314 (820)
T ss_pred HHHHHHHHHHHHH
Confidence 8888883 43433
No 127
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.004 Score=54.36 Aligned_cols=97 Identities=22% Similarity=0.197 Sum_probs=72.0
Q ss_pred CCccccccC-CCcHHHHHHHHhCCCCCC----------------chHHHHHHHHHHcCC-CeeeecccC-----Ccccce
Q psy7691 37 CPTQELTEG-CFPNAVLQHLKGQGFEEP----------------TAIQAQGWPIALSGR-DMVGIAQTG-----SGKTLA 93 (165)
Q Consensus 37 ~~i~~f~~l-~l~~~l~~~l~~~g~~~~----------------t~~Q~~a~~~~l~G~-di~~~a~tg-----sGKt~~ 93 (165)
..++.|.+. .-.+.+.+.|.+.|.... ...|.+.|..+-+|. +++++..-| -|-|-.
T Consensus 367 ~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDl 446 (542)
T COG1111 367 SRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDL 446 (542)
T ss_pred ceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccE
Confidence 468899988 566788888887766542 136888999998873 555444333 234557
Q ss_pred eeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHH
Q psy7691 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA 134 (165)
Q Consensus 94 ~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~ 134 (165)
++-|+.-.+..-++||.|||||. +.|.++.+++..+++.+
T Consensus 447 VifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrdea 486 (542)
T COG1111 447 VIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDEA 486 (542)
T ss_pred EEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchHHH
Confidence 88899777788999999999998 88999999998865544
No 128
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.0019 Score=57.60 Aligned_cols=72 Identities=26% Similarity=0.310 Sum_probs=53.6
Q ss_pred HHh-CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHH
Q psy7691 55 LKG-QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ 133 (165)
Q Consensus 55 l~~-~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~ 133 (165)
|+. .||...-+-|.+.|..++.|.|.+++=|||.||+++|- +|. ++ + .| ..++++|. -.+
T Consensus 9 L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQ---iPA----ll----~------~G-~TLVVSPL-iSL 69 (590)
T COG0514 9 LKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQ---IPA----LL----L------EG-LTLVVSPL-ISL 69 (590)
T ss_pred HHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhh---hHH----Hh----c------CC-CEEEECch-HHH
Confidence 444 48999999999999999999999999999999999998 883 11 1 22 56677777 555
Q ss_pred HHHHHHHHHhcC
Q psy7691 134 AKELIAVLTEAS 145 (165)
Q Consensus 134 ~~~i~~~l~~~~ 145 (165)
+.+=.+.++..+
T Consensus 70 M~DQV~~l~~~G 81 (590)
T COG0514 70 MKDQVDQLEAAG 81 (590)
T ss_pred HHHHHHHHHHcC
Confidence 554444444444
No 129
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.99 E-value=0.0015 Score=61.27 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=38.2
Q ss_pred HHHHHcCCCeeeecccCCcccceeeecCCCC-ChhHHHHhhccCCCCCCCCceEEEECCC
Q psy7691 71 WPIALSGRDMVGIAQTGSGKTLAVINFDYPN-SSEDYIHRIGRTGRCASSGTAYTFFTPN 129 (165)
Q Consensus 71 ~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~-~~~~~i~r~gr~~r~~~~g~~~~~~~p~ 129 (165)
+..+.+|.|+..+. .+++++.|. ...+|.||+||+||.|+.|.|++++.+.
T Consensus 719 T~iie~GIDIp~v~--------~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 719 TTIIETGIDIPNAN--------TIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CChhhcccccccCC--------EEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 33444555555444 678888764 4668999999999999999999998764
No 130
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.92 E-value=0.0012 Score=59.46 Aligned_cols=59 Identities=22% Similarity=0.159 Sum_probs=43.9
Q ss_pred HHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 73 IALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 73 ~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
.+..+..+++.|+||+|||++|+ +| .+..+.. ..+..+++.+|+ +++..|+.+-+....
T Consensus 12 al~~~~~lliEA~TGtGKTlAYL---lp-----al~~~~~-----~~~~rvlIstpT-~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMI---MA-----ALTMLKE-----RPDQKIAIAVPT-LALMGQLWSELERLT 70 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHH---HH-----HHHHHHh-----ccCceEEEECCc-HHHHHHHHHHHHHHH
Confidence 44667889999999999999999 88 5554321 123578889998 888888887665544
No 131
>PRK02362 ski2-like helicase; Provisional
Probab=96.91 E-value=0.0019 Score=59.22 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=29.7
Q ss_pred CCCChhHHHHhhccCCCCCCC--CceEEEECCCcHHHHHHHHHHHH
Q psy7691 99 YPNSSEDYIHRIGRTGRCASS--GTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 99 lP~~~~~~i~r~gr~~r~~~~--g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
.|.+..+|+|++||+||.|.. |.++++..+. .+......+++.
T Consensus 365 ~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~-~~~~~~~~~~l~ 409 (737)
T PRK02362 365 QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY-DELDELFERYIW 409 (737)
T ss_pred eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc-hhHHHHHHHHHh
Confidence 588899999999999999965 7677766544 222223344554
No 132
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=96.77 E-value=0.0022 Score=53.26 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=20.7
Q ss_pred eeeecCCCCChhHHHHhhccCCCCCCCC
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCASSG 120 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~~~g 120 (165)
.+++|+.| .++|+||+||+||.|+..
T Consensus 298 ~vi~~~~~--~~~~iqr~GR~gR~g~~~ 323 (358)
T TIGR01587 298 VMITELAP--IDSLIQRLGRLHRYGRKN 323 (358)
T ss_pred EEEEcCCC--HHHHHHHhccccCCCCCC
Confidence 45666666 788999999999998654
No 133
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.64 E-value=0.0024 Score=61.19 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=33.4
Q ss_pred HHHHHcCCCeeeecccCCcccceee-----ecCCCCChhHHHHhhccCCCCCCCCceEEEECCC
Q psy7691 71 WPIALSGRDMVGIAQTGSGKTLAVI-----NFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129 (165)
Q Consensus 71 ~~~~l~G~di~~~a~tgsGKt~~~~-----~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~ 129 (165)
+..+.+|.|+..+. +++ ||++| +|+||+||+||.|+.|.++++..+.
T Consensus 868 TdIierGIDIP~v~--------~VIi~~ad~fgla----q~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 868 TTIIETGIDIPTAN--------TIIIERADHFGLA----QLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CchhhcccccccCC--------EEEEecCCCCCHH----HHHHHhhccCCCCCceEEEEEeCCC
Confidence 34444555555444 555 66665 5999999999999999999877543
No 134
>PRK13766 Hef nuclease; Provisional
Probab=96.64 E-value=0.0032 Score=57.78 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=49.5
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
.+.+.|.+....++.+ |++++++||+|||..++ ++ ..+++ + ..+..+++++|+ ..++.|..+.+
T Consensus 15 ~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~---~~-----i~~~l-~-----~~~~~vLvl~Pt-~~L~~Q~~~~~ 78 (773)
T PRK13766 15 EARLYQQLLAATALKK-NTLVVLPTGLGKTAIAL---LV-----IAERL-H-----KKGGKVLILAPT-KPLVEQHAEFF 78 (773)
T ss_pred CccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHH---HH-----HHHHH-H-----hCCCeEEEEeCc-HHHHHHHHHHH
Confidence 5678898888777777 99999999999998766 44 44444 1 133468899998 77777777666
Q ss_pred Hhc
Q psy7691 142 TEA 144 (165)
Q Consensus 142 ~~~ 144 (165)
...
T Consensus 79 ~~~ 81 (773)
T PRK13766 79 RKF 81 (773)
T ss_pred HHH
Confidence 653
No 135
>KOG0351|consensus
Probab=96.60 E-value=0.01 Score=55.70 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=52.4
Q ss_pred HHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHH
Q psy7691 54 HLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ 133 (165)
Q Consensus 54 ~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~ 133 (165)
.....|+....+.|.++|-..+.|+|.++.-+||.||.++|- ||.- + .+...++|+|. ..|
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQ---lPA~----l-----------~~gitvVISPL-~SL 316 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQ---LPAL----L-----------LGGVTVVISPL-ISL 316 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEee---cccc----c-----------cCCceEEeccH-HHH
Confidence 344469999999999999999999999999999999999998 8831 1 11266777777 555
Q ss_pred HHHHHHHH
Q psy7691 134 AKELIAVL 141 (165)
Q Consensus 134 ~~~i~~~l 141 (165)
+.+-...+
T Consensus 317 m~DQv~~L 324 (941)
T KOG0351|consen 317 MQDQVTHL 324 (941)
T ss_pred HHHHHHhh
Confidence 55444444
No 136
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=96.49 E-value=0.003 Score=58.62 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=41.0
Q ss_pred HHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHH
Q psy7691 72 PIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 72 ~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
..+..+.|++++|+||||||.+|. +| .+++... .+ .++++.|+ +.++.++.+.+.
T Consensus 15 ~~l~~~~~vvv~A~TGSGKTt~~p---l~-----lL~~~~~------~~-~ilvlqPr-R~aA~qia~rva 69 (812)
T PRK11664 15 TALKTAPQVLLKAPTGAGKSTWLP---LQ-----LLQHGGI------NG-KIIMLEPR-RLAARNVAQRLA 69 (812)
T ss_pred HHHHhCCCEEEEcCCCCCHHHHHH---HH-----HHHcCCc------CC-eEEEECCh-HHHHHHHHHHHH
Confidence 345677899999999999999987 55 5544311 22 57788888 888888888774
No 137
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=96.49 E-value=0.0026 Score=58.98 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=26.8
Q ss_pred eeeecCCCCChhHHHHhhccCCCCCCCC-ceEEEECC
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCASSG-TAYTFFTP 128 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~~~g-~~~~~~~p 128 (165)
.+++++.| .++|+||+||++|.|+.+ ..+.++.+
T Consensus 356 ~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 356 HLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred eEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 57777776 689999999999999864 45666655
No 138
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.003 Score=59.48 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=53.7
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 51 l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
+.......+|. +-++|++|+..+.+|..++++|+||+|||. |-.|- +++..| .|..+.+.+|.
T Consensus 109 ~~~~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTv-VaeyA--------i~~al~------~~qrviYTsPI- 171 (1041)
T COG4581 109 LAPPAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTV-VAEYA--------IALALR------DGQRVIYTSPI- 171 (1041)
T ss_pred cCcHHHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcch-HHHHH--------HHHHHH------cCCceEeccch-
Confidence 34455667896 789999999999999999999999999997 33222 333333 22236666666
Q ss_pred HHHHHHHHHHHHhcC
Q psy7691 131 GKQAKELIAVLTEAS 145 (165)
Q Consensus 131 ~~~~~~i~~~l~~~~ 145 (165)
..+.+|..+-+...-
T Consensus 172 KALsNQKyrdl~~~f 186 (1041)
T COG4581 172 KALSNQKYRDLLAKF 186 (1041)
T ss_pred hhhhhhHHHHHHHHh
Confidence 666666655554433
No 139
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.35 E-value=0.01 Score=55.79 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=53.5
Q ss_pred HHHHHHHHhC-CCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEEC
Q psy7691 49 NAVLQHLKGQ-GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127 (165)
Q Consensus 49 ~~l~~~l~~~-g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~ 127 (165)
+++.+.+.++ || .|+..|.-..-.+.+|..+-++||||.|||..-..+ .-|+-. +|....++.
T Consensus 69 e~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~------sl~~a~---------kgkr~yii~ 132 (1187)
T COG1110 69 EEFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLM------SLYLAK---------KGKRVYIIV 132 (1187)
T ss_pred HHHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHH------HHHHHh---------cCCeEEEEe
Confidence 3444455665 66 699999999999999999999999999999733211 114432 334677888
Q ss_pred CCcHHHHHHHHHHHHh
Q psy7691 128 PNNGKQAKELIAVLTE 143 (165)
Q Consensus 128 p~~~~~~~~i~~~l~~ 143 (165)
|| ..++.|..+-++.
T Consensus 133 PT-~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 133 PT-TTLVRQVYERLKK 147 (1187)
T ss_pred cC-HHHHHHHHHHHHH
Confidence 88 5565555555544
No 140
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=96.32 E-value=0.0087 Score=51.81 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=46.3
Q ss_pred CCchHHHHHHHHHHc----CCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALS----GRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~----G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.+.+.|.+|+..+.. ++..+++.|||+|||.... - .+.++++. +++++|+ .+++.|-
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~----~-----~~~~~~~~---------~Lvlv~~-~~L~~Qw 96 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAA----E-----AIAELKRS---------TLVLVPT-KELLDQW 96 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHH----H-----HHHHhcCC---------EEEEECc-HHHHHHH
Confidence 478899999999988 8999999999999998543 1 44444331 8888888 7887777
Q ss_pred HHHH
Q psy7691 138 IAVL 141 (165)
Q Consensus 138 ~~~l 141 (165)
.+.+
T Consensus 97 ~~~~ 100 (442)
T COG1061 97 AEAL 100 (442)
T ss_pred HHHH
Confidence 5433
No 141
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.32 E-value=0.006 Score=56.81 Aligned_cols=72 Identities=25% Similarity=0.325 Sum_probs=52.3
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.|.. |+++|..+--.+..|. ++.++||+|||+++. +|. |++-. + |..+.+++|+ +.|+.|.
T Consensus 79 lg~~-~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~---Lpa----~~~al--~------G~~V~VvTpn-~yLA~qd 139 (896)
T PRK13104 79 LGLR-HFDVQLIGGMVLHEGN--IAEMRTGEGKTLVAT---LPA----YLNAI--S------GRGVHIVTVN-DYLAKRD 139 (896)
T ss_pred cCCC-cchHHHhhhhhhccCc--cccccCCCCchHHHH---HHH----HHHHh--c------CCCEEEEcCC-HHHHHHH
Confidence 4665 7889987655556664 579999999999998 883 33322 2 2347799999 8999999
Q ss_pred HHHHHhcCCCC
Q psy7691 138 IAVLTEASQPI 148 (165)
Q Consensus 138 ~~~l~~~~~~~ 148 (165)
.+.+......+
T Consensus 140 ~e~m~~l~~~l 150 (896)
T PRK13104 140 SQWMKPIYEFL 150 (896)
T ss_pred HHHHHHHhccc
Confidence 88887754443
No 142
>PF13245 AAA_19: Part of AAA domain
Probab=96.18 E-value=0.016 Score=38.01 Aligned_cols=55 Identities=25% Similarity=0.352 Sum_probs=35.1
Q ss_pred HcCCCee-eecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 75 LSGRDMV-GIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 75 l~G~di~-~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
+.+..++ +.++.|||||..+.+ .+.+.-+. +... +..+++++|+ +..+..|.+.+
T Consensus 7 l~~~~~~vv~g~pGtGKT~~~~~---------~i~~l~~~-~~~~-~~~vlv~a~t-~~aa~~l~~rl 62 (76)
T PF13245_consen 7 LAGSPLFVVQGPPGTGKTTTLAA---------RIAELLAA-RADP-GKRVLVLAPT-RAAADELRERL 62 (76)
T ss_pred HhhCCeEEEECCCCCCHHHHHHH---------HHHHHHHH-hcCC-CCeEEEECCC-HHHHHHHHHHH
Confidence 3344544 599999999964431 33333221 2223 6789999999 77777887777
No 143
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.13 E-value=0.0093 Score=55.44 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=41.4
Q ss_pred HHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHH
Q psy7691 72 PIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 72 ~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
..+..+.+++++|+||||||.+|. +| +++... .+..++++.|+ +.++.++.+.+.
T Consensus 12 ~~l~~~~~vIi~a~TGSGKTT~vp---l~-----lL~~~~-------~~~~ilvlqPr-R~aA~qiA~rva 66 (819)
T TIGR01970 12 DALAAHPQVVLEAPPGAGKSTAVP---LA-----LLDAPG-------IGGKIIMLEPR-RLAARSAAQRLA 66 (819)
T ss_pred HHHHcCCcEEEECCCCCCHHHHHH---HH-----HHHhhc-------cCCeEEEEeCc-HHHHHHHHHHHH
Confidence 345567899999999999999987 66 555542 12367888888 888888888774
No 144
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=96.04 E-value=0.0035 Score=43.73 Aligned_cols=87 Identities=23% Similarity=0.343 Sum_probs=50.7
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCC------CCch-HHHHHHHHHHcCC-Ceeeecc-cCCccc----ceeeecCCCCCh
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFE------EPTA-IQAQGWPIALSGR-DMVGIAQ-TGSGKT----LAVINFDYPNSS 103 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~------~~t~-~Q~~a~~~~l~G~-di~~~a~-tgsGKt----~~~~~~~lP~~~ 103 (165)
++..|. .....+.+.+.|.+.++. ..++ .....+..+..|. .++.+.. -|.|-. ..++.++.|.+.
T Consensus 30 ~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~ 109 (131)
T cd00079 30 KVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSP 109 (131)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCH
Confidence 344444 445667777777764442 1111 1222333344443 3332222 233432 257778899999
Q ss_pred hHHHHhhccCCCCCCCCceEE
Q psy7691 104 EDYIHRIGRTGRCASSGTAYT 124 (165)
Q Consensus 104 ~~~i~r~gr~~r~~~~g~~~~ 124 (165)
.+++|++||++|.|..|.+..
T Consensus 110 ~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 110 SSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred HHheecccccccCCCCceEEe
Confidence 999999999999998776554
No 145
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.03 E-value=0.011 Score=53.91 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=47.9
Q ss_pred CCCCchHHHHHH----HHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHH
Q psy7691 60 FEEPTAIQAQGW----PIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAK 135 (165)
Q Consensus 60 ~~~~t~~Q~~a~----~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~ 135 (165)
|..+.|.|.+.. ..+..|.+++.-+|||+|||++.+ .| ...|..+-+ ....+.+.+.+ ..++.
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL---~~--aL~~~~~~~-------~~~kIiy~sRT-hsQl~ 74 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLL---SL--ILAYQQEKP-------EVRKIIYASRT-HSQLE 74 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHH---HH--HHHHHHhcc-------ccccEEEEccc-chHHH
Confidence 555578887644 345677899999999999999887 45 112433321 12356666666 67777
Q ss_pred HHHHHHHhc
Q psy7691 136 ELIAVLTEA 144 (165)
Q Consensus 136 ~i~~~l~~~ 144 (165)
|+.+-+...
T Consensus 75 q~i~Elk~~ 83 (705)
T TIGR00604 75 QATEELRKL 83 (705)
T ss_pred HHHHHHHhh
Confidence 777777664
No 146
>KOG0352|consensus
Probab=95.86 E-value=0.034 Score=48.14 Aligned_cols=80 Identities=25% Similarity=0.296 Sum_probs=54.7
Q ss_pred HHHHHHHh-CCCCCC-chHHHHHHHHHHcC-CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEE
Q psy7691 50 AVLQHLKG-QGFEEP-TAIQAQGWPIALSG-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFF 126 (165)
Q Consensus 50 ~l~~~l~~-~g~~~~-t~~Q~~a~~~~l~G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~ 126 (165)
.+..+|++ .||... |+.|..|+..+..+ .||.++=|||+||+++|- ||. .++ .| ..+++
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQ---LPa----L~~----------~g-ITIV~ 67 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQ---LPA----LVH----------GG-ITIVI 67 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhh---chH----HHh----------CC-eEEEe
Confidence 45556666 477664 78999999988766 699999999999999988 882 111 22 33444
Q ss_pred CCCcHHHHHHHHHHHHhcCCCC
Q psy7691 127 TPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 127 ~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
+|. -.+..+=...+.....++
T Consensus 68 SPL-iALIkDQiDHL~~LKVp~ 88 (641)
T KOG0352|consen 68 SPL-IALIKDQIDHLKRLKVPC 88 (641)
T ss_pred hHH-HHHHHHHHHHHHhcCCch
Confidence 555 666666566666554443
No 147
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.85 E-value=0.019 Score=52.72 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=34.3
Q ss_pred eeeecCCC-CChhHHHHhhccCCCCCCCCce-------EEEECCCcHHHH
Q psy7691 93 AVINFDYP-NSSEDYIHRIGRTGRCASSGTA-------YTFFTPNNGKQA 134 (165)
Q Consensus 93 ~~~~~~lP-~~~~~~i~r~gr~~r~~~~g~~-------~~~~~p~~~~~~ 134 (165)
.+++++.| .+..+|+||+||.+|.+..|.+ +.++++.+.+..
T Consensus 563 vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~ 612 (732)
T TIGR00603 563 VLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMY 612 (732)
T ss_pred EEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHH
Confidence 68888887 4889999999999999877664 788888876543
No 148
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=95.74 E-value=0.01 Score=55.02 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=51.8
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.|.. |+++|..+-=.+..|. ++..+||+|||+++. +|. |++.+ + |..+-+++|+ +.+|.|.
T Consensus 78 lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~---lpa----~l~aL--~------G~~V~IvTpn-~yLA~rd 138 (830)
T PRK12904 78 LGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVAT---LPA----YLNAL--T------GKGVHVVTVN-DYLAKRD 138 (830)
T ss_pred hCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHH---HHH----HHHHH--c------CCCEEEEecC-HHHHHHH
Confidence 5775 8999998766667774 689999999999988 883 56665 1 1235589999 7888877
Q ss_pred HHHHHhcCC
Q psy7691 138 IAVLTEASQ 146 (165)
Q Consensus 138 ~~~l~~~~~ 146 (165)
.+.+.....
T Consensus 139 ~e~~~~l~~ 147 (830)
T PRK12904 139 AEWMGPLYE 147 (830)
T ss_pred HHHHHHHHh
Confidence 777766433
No 149
>KOG0354|consensus
Probab=95.72 E-value=0.02 Score=52.25 Aligned_cols=71 Identities=24% Similarity=0.243 Sum_probs=45.4
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
.+-.-|.+-...+| |.++++++|||+|||..-.. . ..+.. |. + ..--++|++|+ +.++.|-...+
T Consensus 62 ~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~-----V---m~nh~-rw-~---p~~KiVF~aP~-~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAV-----I---MKNHF-EW-R---PKGKVVFLAPT-RPLVNQQIACF 126 (746)
T ss_pred cccHHHHHHhHHhh-cCCeEEEeecCCCccchHHH-----H---HHHHH-hc-C---CcceEEEeeCC-chHHHHHHHHH
Confidence 35567888778888 99999999999999984320 0 11111 32 2 22568889999 44444433666
Q ss_pred HhcCCC
Q psy7691 142 TEASQP 147 (165)
Q Consensus 142 ~~~~~~ 147 (165)
...+.+
T Consensus 127 ~~~~~~ 132 (746)
T KOG0354|consen 127 SIYLIP 132 (746)
T ss_pred hhccCc
Confidence 555544
No 150
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.59 E-value=0.02 Score=43.69 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=42.0
Q ss_pred CchHHHHHHHHHHcCCC-eeeecccCCcccceeeecCCCCChhHHHHhhccC--CCCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 63 PTAIQAQGWPIALSGRD-MVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRT--GRCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 63 ~t~~Q~~a~~~~l~G~d-i~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~--~r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
..+.|..|+..++...+ .++.+|+|+|||..+.. .+..+.+. .+....+..+++++++....-.-+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~---------~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~ 72 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS---------IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILER 72 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH---------HHHHH-------HCCCSS-EEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH---------HHHHhccchhhhhhhccccceeecCCchhHHHHHHH
Confidence 45789999999988888 88999999999964331 33333110 12234667899999995443333333
Q ss_pred HH
Q psy7691 140 VL 141 (165)
Q Consensus 140 ~l 141 (165)
+.
T Consensus 73 l~ 74 (236)
T PF13086_consen 73 LK 74 (236)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 151
>KOG0353|consensus
Probab=95.52 E-value=0.016 Score=49.40 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=41.2
Q ss_pred CcHHHHHHHHh-CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCC
Q psy7691 47 FPNAVLQHLKG-QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYP 100 (165)
Q Consensus 47 l~~~l~~~l~~-~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP 100 (165)
-..+..+.|++ ....+..|.|..+|...+.|.|++.+-+||.||+++|- ||
T Consensus 78 ws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyq---lp 129 (695)
T KOG0353|consen 78 WSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQ---LP 129 (695)
T ss_pred CchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhh---hh
Confidence 33455555554 25567788999999999999999999999999999987 77
No 152
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=95.51 E-value=0.0096 Score=55.33 Aligned_cols=36 Identities=25% Similarity=0.502 Sum_probs=30.2
Q ss_pred eeeecCCCCC------------------hhHHHHhhccCCCCCCCCceEEEECCC
Q psy7691 93 AVINFDYPNS------------------SEDYIHRIGRTGRCASSGTAYTFFTPN 129 (165)
Q Consensus 93 ~~~~~~lP~~------------------~~~~i~r~gr~~r~~~~g~~~~~~~p~ 129 (165)
.||++++|.. ..+|+||.||+||. ..|.|+.+++..
T Consensus 283 ~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~ 336 (819)
T TIGR01970 283 VVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEE 336 (819)
T ss_pred EEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHH
Confidence 7999999853 23589999999999 899999999755
No 153
>PRK09694 helicase Cas3; Provisional
Probab=95.42 E-value=0.027 Score=52.78 Aligned_cols=64 Identities=27% Similarity=0.319 Sum_probs=40.6
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
.|+|.|..+......+.-++..|+||+|||.+.+ + ..+++...+. ...+.+..|+ +..++++.+
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL---~------~A~~l~~~~~----~~gi~~aLPT-~Atan~m~~ 349 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAAL---A------YAWRLIDQGL----ADSIIFALPT-QATANAMLS 349 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHH---H------HHHHHHHhCC----CCeEEEECcH-HHHHHHHHH
Confidence 5899999875443344567889999999999865 2 3444432211 2357788887 544444443
No 154
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.41 E-value=0.019 Score=46.09 Aligned_cols=65 Identities=20% Similarity=0.099 Sum_probs=38.2
Q ss_pred CchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCC-CCCceEEEECCCcHHHHHHHHHHH
Q psy7691 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCA-SSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 63 ~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~-~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
+|+.|.+++.. ...++++.|..|||||... ++|+.+.-..+ -....+++++.+ +..+..+...+
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l------------~~ri~~ll~~~~~~~~~Il~lTft-~~aa~e~~~ri 65 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTL------------LERIAYLLYEGGVPPERILVLTFT-NAAAQEMRERI 65 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHH------------HHHHHHHHHTSSSTGGGEEEEESS-HHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHH------------HHHHHHhhccccCChHHheecccC-HHHHHHHHHHH
Confidence 36788887755 5568899999999999843 34432211111 334469999998 44444444333
Q ss_pred H
Q psy7691 142 T 142 (165)
Q Consensus 142 ~ 142 (165)
.
T Consensus 66 ~ 66 (315)
T PF00580_consen 66 R 66 (315)
T ss_dssp H
T ss_pred H
Confidence 3
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=95.37 E-value=0.011 Score=37.69 Aligned_cols=25 Identities=52% Similarity=0.882 Sum_probs=22.3
Q ss_pred eeeecCCCCChhHHHHhhccCCCCC
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCA 117 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~ 117 (165)
.++.++.|.+..+|.|++||++|.|
T Consensus 58 ~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 58 LVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred EEEEeCCCCCHHHHHHhhcccccCC
Confidence 6788899999999999999998865
No 156
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.32 E-value=0.033 Score=52.55 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=44.3
Q ss_pred CCCCCchHHHHHHH----HHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHH
Q psy7691 59 GFEEPTAIQAQGWP----IALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA 134 (165)
Q Consensus 59 g~~~~t~~Q~~a~~----~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~ 134 (165)
||. +-+-|.+-.. .+..+.++++-|+||+|||++|+ +| .+... + ..+..+++.++| ..+-
T Consensus 255 ~~e-~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYL---lp-----a~~~a-~-----~~~~~vvIsT~T-~~LQ 318 (928)
T PRK08074 255 KYE-KREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYL---LP-----AAYFA-K-----KKEEPVVISTYT-IQLQ 318 (928)
T ss_pred CCc-CCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHH---HH-----HHHHh-h-----ccCCeEEEEcCC-HHHH
Confidence 665 6777776333 34567889999999999999999 89 44322 1 234567777877 6665
Q ss_pred HHHHH
Q psy7691 135 KELIA 139 (165)
Q Consensus 135 ~~i~~ 139 (165)
.|+..
T Consensus 319 ~Ql~~ 323 (928)
T PRK08074 319 QQLLE 323 (928)
T ss_pred HHHHH
Confidence 66543
No 157
>KOG0352|consensus
Probab=95.27 E-value=0.032 Score=48.32 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=60.5
Q ss_pred cCCCcHHHHHHHHhCCCCCC-----------chHHHHHHHHHHcCCCeeeeccc---CCc--c--cceeeecCCCCChhH
Q psy7691 44 EGCFPNAVLQHLKGQGFEEP-----------TAIQAQGWPIALSGRDMVGIAQT---GSG--K--TLAVINFDYPNSSED 105 (165)
Q Consensus 44 ~l~l~~~l~~~l~~~g~~~~-----------t~~Q~~a~~~~l~G~di~~~a~t---gsG--K--t~~~~~~~lP~~~~~ 105 (165)
+-+-++++.=.|...|+... |.+|.. .|++ +++++..| |.| | .-.|+||++|.++.-
T Consensus 264 TR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~----WM~~-~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~Ag 338 (641)
T KOG0352|consen 264 TRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEK----WMNN-EIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAG 338 (641)
T ss_pred cHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHH----HhcC-CCCEEEEEeccccccCCcceeEEEecCchhhhHH
Confidence 33556666666666666432 445543 4455 44444443 444 2 225899999999999
Q ss_pred HHHhhccCCCCCCCCceEEEECCCcHHHHH
Q psy7691 106 YIHRIGRTGRCASSGTAYTFFTPNNGKQAK 135 (165)
Q Consensus 106 ~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~ 135 (165)
|-|..||+||+|..+.+-+++...++....
T Consensus 339 YYQESGRAGRDGk~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 339 YYQESGRAGRDGKRSYCRLYYSRQDKNALN 368 (641)
T ss_pred HHHhccccccCCCccceeeeecccchHHHH
Confidence 999999999999999999999988865543
No 158
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=95.24 E-value=0.012 Score=56.93 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=53.5
Q ss_pred CCCcccccc-CCCcHHHHHHHHhCCCCC---------Cc-hHHHHH------------HHHHHcCCCeeeecccCCcccc
Q psy7691 36 PCPTQELTE-GCFPNAVLQHLKGQGFEE---------PT-AIQAQG------------WPIALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 36 p~~i~~f~~-l~l~~~l~~~l~~~g~~~---------~t-~~Q~~a------------~~~~l~G~di~~~a~tgsGKt~ 92 (165)
+..++.|-. ..-.+.+.+.|.+.++.. .+ ..|..+ ++.+.+|.||..+.
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIAEtSITIpgI~-------- 357 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIK-------- 357 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEeccHHhhccccCcce--------
Confidence 344666644 345566777777766542 12 234333 33333444444443
Q ss_pred eeeecC---------------CCC---ChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 93 AVINFD---------------YPN---SSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 93 ~~~~~~---------------lP~---~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
.||+++ +|. +..+|.||.||+||. ..|.|+.+++..+
T Consensus 358 yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 358 YVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred EEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHH
Confidence 788875 453 347899999999999 7899999998653
No 159
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.23 E-value=0.032 Score=38.44 Aligned_cols=53 Identities=30% Similarity=0.347 Sum_probs=34.7
Q ss_pred CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 79 DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 79 di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
.++..++||+|||..++ . ++.+..+. .....+++++|. ..+..+..+.+....
T Consensus 2 ~~~i~~~~G~GKT~~~~---~------~~~~~~~~----~~~~~~lv~~p~-~~l~~~~~~~~~~~~ 54 (144)
T cd00046 2 DVLLAAPTGSGKTLAAL---L------PILELLDS----LKGGQVLVLAPT-RELANQVAERLKELF 54 (144)
T ss_pred CEEEECCCCCchhHHHH---H------HHHHHHhc----ccCCCEEEEcCc-HHHHHHHHHHHHHHh
Confidence 57889999999998765 2 34333332 123467888888 677776666655544
No 160
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=95.16 E-value=0.015 Score=54.08 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=29.8
Q ss_pred eeeecCCCCC------------------hhHHHHhhccCCCCCCCCceEEEECCC
Q psy7691 93 AVINFDYPNS------------------SEDYIHRIGRTGRCASSGTAYTFFTPN 129 (165)
Q Consensus 93 ~~~~~~lP~~------------------~~~~i~r~gr~~r~~~~g~~~~~~~p~ 129 (165)
.||++++|.. ..+|+||.||+||. ..|.|+.+++..
T Consensus 286 ~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 286 LVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred EEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 7899888753 24799999999998 689999998855
No 161
>PRK01172 ski2-like helicase; Provisional
Probab=95.15 E-value=0.03 Score=50.80 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=26.4
Q ss_pred CCChhHHHHhhccCCCCCC--CCceEEEECCCcHHHHHHHHHHHH
Q psy7691 100 PNSSEDYIHRIGRTGRCAS--SGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 100 P~~~~~~i~r~gr~~r~~~--~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
|-+..+|.||+||+||.|. .|.+++++...+ ....+.+++.
T Consensus 347 ~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~--~~~~~~~~l~ 389 (674)
T PRK01172 347 YLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA--SYDAAKKYLS 389 (674)
T ss_pred eCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc--cHHHHHHHHc
Confidence 3457789999999999995 455666655432 1233455553
No 162
>PRK00254 ski2-like helicase; Provisional
Probab=95.14 E-value=0.031 Score=51.19 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=25.3
Q ss_pred ecCCCC-ChhHHHHhhccCCCCC--CCCceEEEECCCc
Q psy7691 96 NFDYPN-SSEDYIHRIGRTGRCA--SSGTAYTFFTPNN 130 (165)
Q Consensus 96 ~~~lP~-~~~~~i~r~gr~~r~~--~~g~~~~~~~p~~ 130 (165)
+|+.|. ...+|+||+||+||.| ..|.++++..+.+
T Consensus 352 ~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 352 NFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 355543 3568999999999976 5677887776654
No 163
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=94.90 E-value=0.057 Score=51.95 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=51.0
Q ss_pred CCchHHHHHHHHHH----cC-CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHH
Q psy7691 62 EPTAIQAQGWPIAL----SG-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKE 136 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l----~G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~ 136 (165)
.+.+.|.+|+..+. .| +.++++.+||||||...+ . ++.++-+.++ ...++|+++. .++..|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai----~-----li~~L~~~~~----~~rVLfLvDR-~~L~~Q 478 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI----A-----LMYRLLKAKR----FRRILFLVDR-SALGEQ 478 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH----H-----HHHHHHhcCc----cCeEEEEecH-HHHHHH
Confidence 36889999987764 34 578899999999997543 2 5555544432 2367888877 889999
Q ss_pred HHHHHHhcCC
Q psy7691 137 LIAVLTEASQ 146 (165)
Q Consensus 137 i~~~l~~~~~ 146 (165)
..+.+.....
T Consensus 479 a~~~F~~~~~ 488 (1123)
T PRK11448 479 AEDAFKDTKI 488 (1123)
T ss_pred HHHHHHhccc
Confidence 8888877543
No 164
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.81 E-value=0.068 Score=48.94 Aligned_cols=38 Identities=45% Similarity=0.474 Sum_probs=27.9
Q ss_pred CCCCCchHHHHHHHHH---HcC------CCeeeecccCCcccceeeecCCC
Q psy7691 59 GFEEPTAIQAQGWPIA---LSG------RDMVGIAQTGSGKTLAVINFDYP 100 (165)
Q Consensus 59 g~~~~t~~Q~~a~~~~---l~G------~di~~~a~tgsGKt~~~~~~~lP 100 (165)
||. +-+-|.+-...+ +.+ ..+++-|+||+|||++|+ +|
T Consensus 23 ~~e-~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYL---lP 69 (697)
T PRK11747 23 GFI-PRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYL---LA 69 (697)
T ss_pred CCC-cCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHH---HH
Confidence 675 567777633333 333 568899999999999999 88
No 165
>PHA02558 uvsW UvsW helicase; Provisional
Probab=94.81 E-value=0.023 Score=49.86 Aligned_cols=90 Identities=16% Similarity=0.012 Sum_probs=55.0
Q ss_pred CCccccccCCCcHHHHHHHHhCCCCC------CchHHHHHHHH-HHcCCC-eeee--cccCCcc----cceeeecCCCCC
Q psy7691 37 CPTQELTEGCFPNAVLQHLKGQGFEE------PTAIQAQGWPI-ALSGRD-MVGI--AQTGSGK----TLAVINFDYPNS 102 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~~~l~~~g~~~------~t~~Q~~a~~~-~l~G~d-i~~~--a~tgsGK----t~~~~~~~lP~~ 102 (165)
.+++.|....-.+.+.+.|.+.|+.. .+..++..+-. +..|.. ++++ +--|.|= .-++++++.|.+
T Consensus 346 ~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s 425 (501)
T PHA02558 346 NTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKS 425 (501)
T ss_pred CEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcc
Confidence 45666666555677788888877643 23344443322 333443 2222 2334442 225677888888
Q ss_pred hhHHHHhhccCCCCCCCCceEEEE
Q psy7691 103 SEDYIHRIGRTGRCASSGTAYTFF 126 (165)
Q Consensus 103 ~~~~i~r~gr~~r~~~~g~~~~~~ 126 (165)
...|+||+||++|.+..+..+.++
T Consensus 426 ~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 426 KIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred hhhhhhhhhccccCCCCCceEEEE
Confidence 889999999999998766555544
No 166
>KOG0354|consensus
Probab=94.80 E-value=0.064 Score=49.10 Aligned_cols=89 Identities=19% Similarity=0.195 Sum_probs=60.6
Q ss_pred CCccccccC-CCcHHHHHHHHh-CCC-----------------CCCchHHHHHHHHHHcCC-CeeeecccC-----Cccc
Q psy7691 37 CPTQELTEG-CFPNAVLQHLKG-QGF-----------------EEPTAIQAQGWPIALSGR-DMVGIAQTG-----SGKT 91 (165)
Q Consensus 37 ~~i~~f~~l-~l~~~l~~~l~~-~g~-----------------~~~t~~Q~~a~~~~l~G~-di~~~a~tg-----sGKt 91 (165)
..++.|.+. .....|.++|.+ ... ..-...|.+.+..+..|. ++++...-| -|-.
T Consensus 414 sR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec 493 (746)
T KOG0354|consen 414 SRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGEC 493 (746)
T ss_pred ccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccc
Confidence 457788887 677788888773 111 111247888888887773 444332221 2233
Q ss_pred ceeeecCCCCChhHHHHhhccCCCCCCCCceEEEEC
Q psy7691 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127 (165)
Q Consensus 92 ~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~ 127 (165)
..+|-||.-.+....+||.|| ||+ ++|.++++.+
T Consensus 494 ~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t 527 (746)
T KOG0354|consen 494 NLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTT 527 (746)
T ss_pred cEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEc
Confidence 378999999999999999999 887 6677888877
No 167
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=94.58 E-value=0.032 Score=54.07 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=23.1
Q ss_pred ChhHHHHhhccCCCCCCCCceEEEECCC
Q psy7691 102 SSEDYIHRIGRTGRCASSGTAYTFFTPN 129 (165)
Q Consensus 102 ~~~~~i~r~gr~~r~~~~g~~~~~~~p~ 129 (165)
+..+|+||.||+||.+ .|.|+.+++..
T Consensus 378 Skasa~QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 378 SQASANQRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred CHHHHHHHhhhhCCCC-CceEEEecCHH
Confidence 3468999999999997 89999998754
No 168
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=93.82 E-value=0.12 Score=46.60 Aligned_cols=65 Identities=29% Similarity=0.385 Sum_probs=41.5
Q ss_pred CCCCCchHHHHHHHHH----HcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHH
Q psy7691 59 GFEEPTAIQAQGWPIA----LSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA 134 (165)
Q Consensus 59 g~~~~t~~Q~~a~~~~----l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~ 134 (165)
|| .+.+.|.+.+..+ ..|..+++.|+||+|||++++ +| -+... + ..+..+.+.+.+ ..+.
T Consensus 13 ~~-~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL---~~-----al~~~-~-----~~~~~viist~t-~~lq 76 (654)
T COG1199 13 GF-EPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYL---LP-----ALAYA-R-----EEGKKVIISTRT-KALQ 76 (654)
T ss_pred CC-CCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHH---HH-----HHHHH-H-----HcCCcEEEECCC-HHHH
Confidence 44 4888998766433 445559999999999999999 77 23222 1 122456666666 5554
Q ss_pred HHHHH
Q psy7691 135 KELIA 139 (165)
Q Consensus 135 ~~i~~ 139 (165)
.|+.+
T Consensus 77 ~q~~~ 81 (654)
T COG1199 77 EQLLE 81 (654)
T ss_pred HHHHH
Confidence 55443
No 169
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=93.70 E-value=0.064 Score=50.19 Aligned_cols=68 Identities=24% Similarity=0.271 Sum_probs=48.0
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.|.. |+++|..+--.+..|. ++..+||+|||+++. ||. |++-. .|..+.+++|+ ..++.+.
T Consensus 79 lgm~-~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~---lp~----~l~al--------~g~~VhIvT~n-dyLA~RD 139 (908)
T PRK13107 79 FEMR-HFDVQLLGGMVLDSNR--IAEMRTGEGKTLTAT---LPA----YLNAL--------TGKGVHVITVN-DYLARRD 139 (908)
T ss_pred hCCC-cCchHHhcchHhcCCc--cccccCCCCchHHHH---HHH----HHHHh--------cCCCEEEEeCC-HHHHHHH
Confidence 4665 7889977544445553 579999999999998 883 44432 22348899999 7788877
Q ss_pred HHHHHhc
Q psy7691 138 IAVLTEA 144 (165)
Q Consensus 138 ~~~l~~~ 144 (165)
.+++...
T Consensus 140 ~e~m~~l 146 (908)
T PRK13107 140 AENNRPL 146 (908)
T ss_pred HHHHHHH
Confidence 7776553
No 170
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.68 E-value=0.13 Score=47.07 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=28.3
Q ss_pred eeecCCCCCh----------hHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 94 VINFDYPNSS----------EDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 94 ~~~~~lP~~~----------~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
++++|.+... ..|+|+.||+||.+..|.+++....++
T Consensus 504 il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 504 VLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred EEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 4677777553 568999999999999998887665443
No 171
>KOG0951|consensus
Probab=93.50 E-value=0.14 Score=49.47 Aligned_cols=88 Identities=22% Similarity=0.317 Sum_probs=62.4
Q ss_pred CCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcC-CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCC-C---C
Q psy7691 45 GCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCA-S---S 119 (165)
Q Consensus 45 l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~-~---~ 119 (165)
+.+|++-..++. |......+|..-.+.++++ .+++.|||||+|||.--+ + +.++.+++..|.. . .
T Consensus 294 selP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAv---L-----tiLqel~~h~r~dgs~nl~ 363 (1674)
T KOG0951|consen 294 SELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAV---L-----TILQELGNHLREDGSVNLA 363 (1674)
T ss_pred cCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHH---H-----HHHHHHhcccccccceecc
Confidence 367777777776 5666889999999999888 579999999999998443 3 3888888754421 1 1
Q ss_pred CceEEEECCCcHHHHHHHHHHHHh
Q psy7691 120 GTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 120 g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
..-+.++.|. ..++..+...+..
T Consensus 364 ~fKIVYIAPm-KaLvqE~VgsfSk 386 (1674)
T KOG0951|consen 364 PFKIVYIAPM-KALVQEMVGSFSK 386 (1674)
T ss_pred cceEEEEeeH-HHHHHHHHHHHHh
Confidence 2257778887 6666666554443
No 172
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.46 E-value=0.085 Score=43.80 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=30.7
Q ss_pred CCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccc
Q psy7691 33 NNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 33 ~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~ 92 (165)
..+|..+..|++|++|+-+.+.+.. -+| =|++.+||||||+.
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~-----------------~~G-LILVTGpTGSGKST 140 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAES-----------------PRG-LILVTGPTGSGKST 140 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhC-----------------CCc-eEEEeCCCCCcHHH
Confidence 3478888899999888887773321 122 37899999999965
No 173
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.32 E-value=0.16 Score=39.12 Aligned_cols=63 Identities=24% Similarity=0.196 Sum_probs=40.5
Q ss_pred CchHHHHHHHHHHcCCC--eeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHH
Q psy7691 63 PTAIQAQGWPIALSGRD--MVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAV 140 (165)
Q Consensus 63 ~t~~Q~~a~~~~l~G~d--i~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~ 140 (165)
.++-|.+++..++...| .+++++.|+|||.... .+.+.-.. .|..+.+++|+ ...+..+.+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~----------~~~~~~~~-----~g~~v~~~apT-~~Aa~~L~~~ 65 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLK----------ALAEALEA-----AGKRVIGLAPT-NKAAKELREK 65 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHH----------HHHHHHHH-----TT--EEEEESS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHH----------HHHHHHHh-----CCCeEEEECCc-HHHHHHHHHh
Confidence 57889999999876543 5577999999997533 12111111 35678999999 5556666655
Q ss_pred H
Q psy7691 141 L 141 (165)
Q Consensus 141 l 141 (165)
+
T Consensus 66 ~ 66 (196)
T PF13604_consen 66 T 66 (196)
T ss_dssp H
T ss_pred h
Confidence 4
No 174
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=92.94 E-value=0.056 Score=45.41 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=40.1
Q ss_pred ccccccCCCcHHHHHHHHhCCCC--C------CchHHH---------HHHHHHHcCCCeeeecccCCcccceeeecCCCC
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFE--E------PTAIQA---------QGWPIALSGRDMVGIAQTGSGKTLAVINFDYPN 101 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~--~------~t~~Q~---------~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~ 101 (165)
++.+.+..-.+.+.+.|++.|+. . ....++ .|++.+.+|.|+... .++ ++ |.
T Consensus 276 LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~~~~iLVaTdv~~rGiDi~~~---------~vi-~~-p~ 344 (357)
T TIGR03158 276 AIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAMQFDILLGTSTVDVGVDFKRD---------WLI-FS-AR 344 (357)
T ss_pred EEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhccCCEEEEecHHhcccCCCCc---------eEE-EC-CC
Confidence 44555567777888888775432 1 011111 145556677776432 344 45 88
Q ss_pred ChhHHHHhhccCC
Q psy7691 102 SSEDYIHRIGRTG 114 (165)
Q Consensus 102 ~~~~~i~r~gr~~ 114 (165)
+.++|+||+||+|
T Consensus 345 ~~~~yiqR~GR~g 357 (357)
T TIGR03158 345 DAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHhhhcccCC
Confidence 9999999999985
No 175
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.47 E-value=0.25 Score=41.77 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=17.6
Q ss_pred CeeeecccCCcccceeeecCCCC
Q psy7691 79 DMVGIAQTGSGKTLAVINFDYPN 101 (165)
Q Consensus 79 di~~~a~tgsGKt~~~~~~~lP~ 101 (165)
+++++|+||||||.+++ +|.
T Consensus 1 H~lv~g~tGsGKt~~~v---iP~ 20 (384)
T cd01126 1 HVLVFAPTRSGKGVGFV---IPN 20 (384)
T ss_pred CeeEecCCCCCCccEEE---ccc
Confidence 47889999999999998 883
No 176
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.98 E-value=0.12 Score=45.69 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=32.2
Q ss_pred eecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 82 GIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 82 ~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
..++||||||..++. .+..+-. .|..++++.|+ ..++.|+.+.+++.
T Consensus 2 L~g~TGsGKT~v~l~---------~i~~~l~------~g~~vLvlvP~-i~L~~Q~~~~l~~~ 48 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQ---------AIEKVLA------LGKSVLVLVPE-IALTPQMIQRFKYR 48 (505)
T ss_pred ccCCCCCCHHHHHHH---------HHHHHHH------cCCeEEEEeCc-HHHHHHHHHHHHHH
Confidence 468999999997651 2222211 24468888898 88888888777653
No 177
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=91.96 E-value=0.25 Score=43.98 Aligned_cols=65 Identities=26% Similarity=0.378 Sum_probs=47.0
Q ss_pred CCCCCchHHHHHHHHHHcC-----CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHH
Q psy7691 59 GFEEPTAIQAQGWPIALSG-----RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ 133 (165)
Q Consensus 59 g~~~~t~~Q~~a~~~~l~G-----~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~ 133 (165)
.|. |+--|-.||..+..| ++-...+.||||||..+.| .|.++.|+ .++++|. ..+
T Consensus 10 ~f~-PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~An---------VI~~~~rP---------tLV~AhN-KTL 69 (663)
T COG0556 10 PFK-PAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMAN---------VIAKVQRP---------TLVLAHN-KTL 69 (663)
T ss_pred CCC-CCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHH---------HHHHhCCC---------eEEEecc-hhH
Confidence 454 777888888877666 3455678999999986543 78888774 6777777 777
Q ss_pred HHHHHHHHHh
Q psy7691 134 AKELIAVLTE 143 (165)
Q Consensus 134 ~~~i~~~l~~ 143 (165)
+.|+..-+..
T Consensus 70 AaQLy~Efk~ 79 (663)
T COG0556 70 AAQLYSEFKE 79 (663)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 178
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.33 E-value=0.45 Score=39.19 Aligned_cols=97 Identities=21% Similarity=0.320 Sum_probs=46.2
Q ss_pred hhcCCHHHHHHHHhhcCcEEec--CCCC-CCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHH-------HHcCCCe
Q psy7691 11 AARLSESEVEAFRQKKEITVKG--NNIP-CPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI-------ALSGRDM 80 (165)
Q Consensus 11 ~~~~~~~~~~~~~~~~~i~~~~--~~~p-~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~-------~l~G~di 80 (165)
.+-|+++.-++|++.++...-- .+.- -.+.-|-+-++..-+++.+... + | .++..-+|. .-||. +
T Consensus 56 ~~iM~~~q~~eF~~~~EcNfai~~~~~gRfRvnAf~qr~~~g~VlRrI~~~-I--P-t~eeL~LPevlk~la~~kRGL-v 130 (375)
T COG5008 56 FSIMSAKQREEFEETHECNFAISARDIGRFRVNAFYQRGLAGLVLRRIETK-I--P-TFEELKLPEVLKDLALAKRGL-V 130 (375)
T ss_pred HHHhhHHHHHHHHhcccceEEEEcCCCceEEeehhhhcCcchhhhhhhhcc-C--C-cHHhcCCcHHHHHhhcccCce-E
Confidence 3457788888888777543321 1100 0122333334444444444321 1 1 111111111 12443 5
Q ss_pred eeecccCCcccce------eeecCCC------CChhHHHHhhcc
Q psy7691 81 VGIAQTGSGKTLA------VINFDYP------NSSEDYIHRIGR 112 (165)
Q Consensus 81 ~~~a~tgsGKt~~------~~~~~lP------~~~~~~i~r~gr 112 (165)
+.+++|||||+.. +-|-+.+ .++..|+|...|
T Consensus 131 iiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPIEfih~h~~ 174 (375)
T COG5008 131 IIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPIEFIHKHKR 174 (375)
T ss_pred EEECCCCCCchhhHHHHhcccccCCCCceEEecChHHHHhcccc
Confidence 6799999999652 1111122 456778886654
No 179
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.32 E-value=0.8 Score=42.28 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=42.7
Q ss_pred CCchHHHHHHHHHHcC----CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSG----RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G----~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.....|..|...+... .-.+..+.||||||.. |++-+...-+ .|..++++.|. -.+..|+
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEv------------Yl~~i~~~L~---~GkqvLvLVPE-I~Ltpq~ 261 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEV------------YLEAIAKVLA---QGKQVLVLVPE-IALTPQL 261 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHH------------HHHHHHHHHH---cCCEEEEEecc-ccchHHH
Confidence 4566788888877555 4578899999999975 5555543322 45678888887 4444444
Q ss_pred HHHHH
Q psy7691 138 IAVLT 142 (165)
Q Consensus 138 ~~~l~ 142 (165)
.+-+.
T Consensus 262 ~~rf~ 266 (730)
T COG1198 262 LARFK 266 (730)
T ss_pred HHHHH
Confidence 44443
No 180
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=91.02 E-value=0.51 Score=42.86 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=42.8
Q ss_pred CCchHHHHHHHHHHcC-CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSG-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAV 140 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~ 140 (165)
.+...|..|+..++.. ..+++.+++|+|||..... ++...-. .|..+++++|+. ..+..+.+.
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~---------ii~~~~~------~g~~VLv~a~sn-~Avd~l~e~ 220 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVE---------LIRQLVK------RGLRVLVTAPSN-IAVDNLLER 220 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHH---------HHHHHHH------cCCCEEEEcCcH-HHHHHHHHH
Confidence 4578999999988876 4567999999999964331 2222211 234788888884 444455544
Q ss_pred HHh
Q psy7691 141 LTE 143 (165)
Q Consensus 141 l~~ 143 (165)
+..
T Consensus 221 l~~ 223 (637)
T TIGR00376 221 LAL 223 (637)
T ss_pred HHh
Confidence 443
No 181
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.83 E-value=0.34 Score=42.74 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=26.9
Q ss_pred eeeecCCCCC----------hhHHHHhhccCCCCCCCCceEEEE-CCCc
Q psy7691 93 AVINFDYPNS----------SEDYIHRIGRTGRCASSGTAYTFF-TPNN 130 (165)
Q Consensus 93 ~~~~~~lP~~----------~~~~i~r~gr~~r~~~~g~~~~~~-~p~~ 130 (165)
.++++|.... ...|+|+.||+||.+..|.+++.. .|..
T Consensus 335 ~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 335 GVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred EEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 3578886332 356899999999999999877544 4443
No 182
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=90.74 E-value=0.52 Score=43.02 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=45.2
Q ss_pred chHHHHHHHHH----Hc-----C-CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHH
Q psy7691 64 TAIQAQGWPIA----LS-----G-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ 133 (165)
Q Consensus 64 t~~Q~~a~~~~----l~-----G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~ 133 (165)
-+.|..|+..+ .+ | +..++..+||||||+..+. +.+++-+. .....++++++. .++
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~---------la~~l~~~----~~~~~vl~lvdR-~~L 305 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLF---------AARKALEL----LKNPKVFFVVDR-REL 305 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHH---------HHHHHHhh----cCCCeEEEEECc-HHH
Confidence 44677777654 23 2 4578899999999985441 23333221 234567788877 889
Q ss_pred HHHHHHHHHhcCC
Q psy7691 134 AKELIAVLTEASQ 146 (165)
Q Consensus 134 ~~~i~~~l~~~~~ 146 (165)
..|+.+.+.....
T Consensus 306 ~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 306 DYQLMKEFQSLQK 318 (667)
T ss_pred HHHHHHHHHhhCC
Confidence 9999988887653
No 183
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.46 E-value=0.35 Score=41.80 Aligned_cols=52 Identities=23% Similarity=0.373 Sum_probs=35.3
Q ss_pred CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCC
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQP 147 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~ 147 (165)
.+++++|+||||||..++ +|. .++ . .+ .+++..|. .+++.....+++..+..
T Consensus 45 ~h~lvig~tgSGKt~~~v---iP~----ll~---~------~~-s~iV~D~K-gEl~~~t~~~r~~~G~~ 96 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV---IPN----LLN---Y------PG-SMIVTDPK-GELYEKTAGYRKKRGYK 96 (469)
T ss_pred eEEEEEeCCCCCccceee---HhH----HHh---c------cC-CEEEEECC-CcHHHHHHHHHHHCCCE
Confidence 469999999999999999 883 221 1 11 45555555 67777666666665543
No 184
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.39 E-value=0.53 Score=42.59 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=18.8
Q ss_pred CCeeeecccCCcccceeeecCCCC
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPN 101 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~ 101 (165)
.+++++|+||||||..++ +|.
T Consensus 159 ~hvLviapTgSGKg~g~V---IPn 179 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFV---IPN 179 (606)
T ss_pred ceEEEEcCCCCCcceEEe---hhh
Confidence 468999999999999999 883
No 185
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.36 E-value=0.61 Score=43.08 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHH-cC--CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 63 PTAIQAQGWPIAL-SG--RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 63 ~t~~Q~~a~~~~l-~G--~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
+.+.|.+|+..+. .| +..+++.|||+|||+..+ - .+.+++ ..+++++|+ ..++.|-.+
T Consensus 256 LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai----~-----aa~~l~---------k~tLILvps-~~Lv~QW~~ 316 (732)
T TIGR00603 256 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV----T-----AACTVK---------KSCLVLCTS-AVSVEQWKQ 316 (732)
T ss_pred cCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHH----H-----HHHHhC---------CCEEEEeCc-HHHHHHHHH
Confidence 4568999988776 34 357789999999998544 1 333332 236788887 555555444
Q ss_pred HHH
Q psy7691 140 VLT 142 (165)
Q Consensus 140 ~l~ 142 (165)
.+.
T Consensus 317 ef~ 319 (732)
T TIGR00603 317 QFK 319 (732)
T ss_pred HHH
Confidence 443
No 186
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=88.65 E-value=0.76 Score=38.96 Aligned_cols=66 Identities=21% Similarity=0.144 Sum_probs=42.8
Q ss_pred CCchHHHHHHHHH----HcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 62 EPTAIQAQGWPIA----LSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 62 ~~t~~Q~~a~~~~----l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
+.|+.|..+...+ -.-.|.++.|-||+|||..+. + -+..+- +.|..+++.+|- .+....+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif----~-----~i~~al------~~G~~vciASPR-vDVclEl 160 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIF----Q-----GIEQAL------NQGGRVCIASPR-VDVCLEL 160 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhH----H-----HHHHHH------hcCCeEEEecCc-ccchHHH
Confidence 3678888765544 455799999999999999764 2 333332 356678888887 4444444
Q ss_pred HHHHHh
Q psy7691 138 IAVLTE 143 (165)
Q Consensus 138 ~~~l~~ 143 (165)
..-+.+
T Consensus 161 ~~Rlk~ 166 (441)
T COG4098 161 YPRLKQ 166 (441)
T ss_pred HHHHHH
Confidence 433333
No 187
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=88.62 E-value=0.73 Score=41.73 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=40.2
Q ss_pred CchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCC-CCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTG-RCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 63 ~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~-r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
+++-|.+++. ....++++.|..|||||... ++|+.+.- ..+.....+++++-+ +..+.++.+-+
T Consensus 2 Ln~~Q~~av~--~~~~~~~V~Ag~GSGKT~~L------------~~ri~~ll~~~~~~p~~IL~vTFt-~~Aa~em~~Rl 66 (664)
T TIGR01074 2 LNPQQQEAVE--YVTGPCLVLAGAGSGKTRVI------------TNKIAYLIQNCGYKARNIAAVTFT-NKAAREMKERV 66 (664)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCCHHHHH------------HHHHHHHHHhcCCCHHHeEEEecc-HHHHHHHHHHH
Confidence 5678888764 23458999999999999743 34443322 122334467777777 45555555544
Q ss_pred H
Q psy7691 142 T 142 (165)
Q Consensus 142 ~ 142 (165)
.
T Consensus 67 ~ 67 (664)
T TIGR01074 67 A 67 (664)
T ss_pred H
Confidence 4
No 188
>KOG0353|consensus
Probab=88.55 E-value=0.5 Score=40.59 Aligned_cols=86 Identities=23% Similarity=0.296 Sum_probs=55.1
Q ss_pred cccccCCCcHHHHHHHHhCCCCCCc------------hHHHHHHHHHHcCC-C-eeeecccCCcc----cceeeecCCCC
Q psy7691 40 QELTEGCFPNAVLQHLKGQGFEEPT------------AIQAQGWPIALSGR-D-MVGIAQTGSGK----TLAVINFDYPN 101 (165)
Q Consensus 40 ~~f~~l~l~~~l~~~l~~~g~~~~t------------~~Q~~a~~~~l~G~-d-i~~~a~tgsGK----t~~~~~~~lP~ 101 (165)
+..-..+-++.+.++|++.|+.... ..|.. ..|. - +++.-..|.|- .-.|+|..+|.
T Consensus 322 iyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w-----~a~eiqvivatvafgmgidkpdvrfvihhsl~k 396 (695)
T KOG0353|consen 322 IYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGW-----IAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPK 396 (695)
T ss_pred EEEeccccHHHHHHHHHhcCccccccccccCccccccccccc-----cccceEEEEEEeeecccCCCCCeeEEEecccch
Confidence 3333446789999999999886421 12211 1121 1 22222333331 12688999999
Q ss_pred ChhHHHH-------------------------------------------hhccCCCCCCCCceEEEECCCc
Q psy7691 102 SSEDYIH-------------------------------------------RIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 102 ~~~~~i~-------------------------------------------r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
+.++|-+ ..||+||++.+..+++++.-.+
T Consensus 397 sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~d 468 (695)
T KOG0353|consen 397 SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFAD 468 (695)
T ss_pred hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHH
Confidence 9999999 6688888888888998887554
No 189
>PRK09694 helicase Cas3; Provisional
Probab=87.97 E-value=1.3 Score=41.74 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=39.0
Q ss_pred eeecCCCCChhHHHHhhccCCCCCCC----C---ceEEEECCCc-----------H-HHHHHHHHHHHhcC---CCCChH
Q psy7691 94 VINFDYPNSSEDYIHRIGRTGRCASS----G---TAYTFFTPNN-----------G-KQAKELIAVLTEAS---QPIPPQ 151 (165)
Q Consensus 94 ~~~~~lP~~~~~~i~r~gr~~r~~~~----g---~~~~~~~p~~-----------~-~~~~~i~~~l~~~~---~~~p~~ 151 (165)
++....| .+.++||+||.+|.++. | +.+.++.|.. . ..+..-.+.+...+ ..+|..
T Consensus 642 lItdlaP--idsLiQRaGR~~R~~~~~rp~~~~~p~~~V~~p~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~ 719 (878)
T PRK09694 642 LITQLCP--VDLLFQRLGRLHRHHRKYRPAGFEIPVATVLLPDGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDA 719 (878)
T ss_pred EEECCCC--HHHHHHHHhccCCCCCCCCCCCCcCceEEEEeccccccCCceeecCchHHHHHHHHHHHhcCCCCcCChHH
Confidence 4444455 67899999999998863 2 3344444432 1 23334445555554 557888
Q ss_pred HHHHhhhCC
Q psy7691 152 LQDLANSNP 160 (165)
Q Consensus 152 ~~~~~~~~~ 160 (165)
+..+....+
T Consensus 720 ~~~lve~vY 728 (878)
T PRK09694 720 YREWIESVY 728 (878)
T ss_pred HHHHHHHHh
Confidence 777766544
No 190
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=87.50 E-value=0.91 Score=44.31 Aligned_cols=68 Identities=26% Similarity=0.233 Sum_probs=42.4
Q ss_pred CchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc---HHHHHHHHH
Q psy7691 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN---GKQAKELIA 139 (165)
Q Consensus 63 ~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~---~~~~~~i~~ 139 (165)
.|+.|.++|. .+|.++++.|..|||||...+ +-+++.+-. |..-..+++++=|+ .++-.+|.+
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv--------~r~~~~~~~----~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLV--------ERIIKKILR----GVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHH--------HHHHHHHhc----CCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 5889999985 689999999999999997432 224444421 11212466777663 234445555
Q ss_pred HHHhc
Q psy7691 140 VLTEA 144 (165)
Q Consensus 140 ~l~~~ 144 (165)
.+...
T Consensus 68 ~l~~~ 72 (1232)
T TIGR02785 68 ALQKA 72 (1232)
T ss_pred HHHHH
Confidence 55443
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=87.29 E-value=1.4 Score=39.79 Aligned_cols=70 Identities=21% Similarity=0.219 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 65 AIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 65 ~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
..|..|+..++...-.++.+..|+|||..+.. ++..+-+.... ..+..+.+.+|| ...+.++.+.+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~---------ll~~l~~~~~~-~~~~~I~l~APT-GkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVAR---------LLLALVKQSPK-QGKLRIALAAPT-GKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH---------HHHHHHHhccc-cCCCcEEEECCc-HHHHHHHHHHHHhh
Confidence 57888998999998899999999999985431 22222111110 112468888998 66677777766554
Q ss_pred C
Q psy7691 145 S 145 (165)
Q Consensus 145 ~ 145 (165)
.
T Consensus 217 ~ 217 (586)
T TIGR01447 217 V 217 (586)
T ss_pred h
Confidence 3
No 192
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=87.27 E-value=0.51 Score=36.88 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=24.6
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceee
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~ 95 (165)
..+..|..++..++.-.-+++.++.|+|||+..+
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHH
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHH
Confidence 3577899999999966668899999999998543
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=86.99 E-value=1.6 Score=39.61 Aligned_cols=70 Identities=24% Similarity=0.240 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 64 TAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 64 t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
...|..|+-.++...-.++.+.+|+|||..+.. ++..+-+. .+.....+.+..|+ ...+.++.+.+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~---------ll~~l~~~--~~~~~~~i~l~APT-gkAA~rL~e~~~~ 221 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK---------LLAALIQL--ADGERCRIRLAAPT-GKAAARLTESLGK 221 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH---------HHHHHHHh--cCCCCcEEEEECCc-HHHHHHHHHHHHh
Confidence 468999998888888899999999999985431 22222111 11123568888898 6777777777765
Q ss_pred cC
Q psy7691 144 AS 145 (165)
Q Consensus 144 ~~ 145 (165)
..
T Consensus 222 ~~ 223 (615)
T PRK10875 222 AL 223 (615)
T ss_pred hh
Confidence 33
No 194
>PRK11054 helD DNA helicase IV; Provisional
Probab=86.94 E-value=2 Score=39.52 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=39.7
Q ss_pred CCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCC-CCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 61 EEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTG-RCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 61 ~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~-r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
..+++.|.+|+- ....++++.|..|||||... ++|++..- +.+..+..+++++-+ +..+..+.+
T Consensus 195 ~~L~~~Q~~av~--~~~~~~lV~agaGSGKT~vl------------~~r~ayLl~~~~~~~~~IL~ltft-~~AA~em~e 259 (684)
T PRK11054 195 SPLNPSQARAVV--NGEDSLLVLAGAGSGKTSVL------------VARAGWLLARGQAQPEQILLLAFG-RQAAEEMDE 259 (684)
T ss_pred CCCCHHHHHHHh--CCCCCeEEEEeCCCCHHHHH------------HHHHHHHHHhCCCCHHHeEEEecc-HHHHHHHHH
Confidence 357889988763 33346889999999999742 33332211 112344567777777 555555544
Q ss_pred HH
Q psy7691 140 VL 141 (165)
Q Consensus 140 ~l 141 (165)
-+
T Consensus 260 RL 261 (684)
T PRK11054 260 RI 261 (684)
T ss_pred HH
Confidence 43
No 195
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=86.73 E-value=0.98 Score=41.14 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=52.6
Q ss_pred cHHHHHH-HHhCCCCCCchHHHHHHHHHHcC------CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCC
Q psy7691 48 PNAVLQH-LKGQGFEEPTAIQAQGWPIALSG------RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSG 120 (165)
Q Consensus 48 ~~~l~~~-l~~~g~~~~t~~Q~~a~~~~l~G------~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g 120 (165)
...+++. +....|. +|..|.+++..+... ++=+.++-=|||||+-.. +. .+.-+ ..|
T Consensus 248 ~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~---la-----ml~ai-------~~G 311 (677)
T COG1200 248 NGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVAL---LA-----MLAAI-------EAG 311 (677)
T ss_pred cHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHH---HH-----HHHHH-------HcC
Confidence 3344444 5667896 899999999988655 334568888999998333 22 22222 356
Q ss_pred ceEEEECCCc---HHHHHHHHHHHHhcC
Q psy7691 121 TAYTFFTPNN---GKQAKELIAVLTEAS 145 (165)
Q Consensus 121 ~~~~~~~p~~---~~~~~~i~~~l~~~~ 145 (165)
..+.++.||+ ++.+..+.+++...+
T Consensus 312 ~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 312 YQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 7889999994 334444555555433
No 196
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=86.38 E-value=2.4 Score=39.19 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=30.2
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.++ ..++.|.+|+..+....-+++.+..|+|||..
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~ 354 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI 354 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH
Confidence 455 47899999999998888889999999999974
No 197
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=86.38 E-value=1 Score=41.32 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.7
Q ss_pred CCeeeecccCCcccceeeecCCCC
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPN 101 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~ 101 (165)
.+++++|+||||||..++ +|.
T Consensus 140 ~hvlviApTgSGKgvg~V---IPn 160 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVV---IPT 160 (670)
T ss_pred ceEEEEecCCCCceeeeh---HhH
Confidence 478999999999999998 783
No 198
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=86.16 E-value=1.4 Score=40.19 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.9
Q ss_pred CCeeeecccCCcccceeeecCCCC
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPN 101 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~ 101 (165)
.++++.|+||+|||..++ +|.
T Consensus 225 ~H~Lv~ApTgsGKt~g~V---IPn 245 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVV---VPT 245 (641)
T ss_pred ceEEEEeCCCCCccceEe---hhh
Confidence 578999999999999998 883
No 199
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=85.72 E-value=0.82 Score=38.92 Aligned_cols=15 Identities=33% Similarity=0.246 Sum_probs=13.1
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
-++++++||||||..
T Consensus 151 lilI~G~TGSGKTT~ 165 (372)
T TIGR02525 151 LGLICGETGSGKSTL 165 (372)
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999874
No 200
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=85.27 E-value=2.8 Score=40.09 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=42.5
Q ss_pred CCCCCCchHHHHHHHHHHcCCC-eeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRD-MVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKE 136 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~d-i~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~ 136 (165)
.|+ ..++-|.+|+..++.+.+ +++++..|+|||..+- .+..+-+ ..|..+..+.|+ ...+..
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~----------~~~~~~e-----~~G~~V~~~ApT-GkAA~~ 405 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLG----------VAREAWE-----AAGYEVRGAALS-GIAAEN 405 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHH----------HHHHHHH-----HcCCeEEEecCc-HHHHHH
Confidence 455 379999999999998766 5689999999997422 1222211 135567788888 344444
Q ss_pred HH
Q psy7691 137 LI 138 (165)
Q Consensus 137 i~ 138 (165)
|.
T Consensus 406 L~ 407 (988)
T PRK13889 406 LE 407 (988)
T ss_pred Hh
Confidence 43
No 201
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=85.20 E-value=1.2 Score=40.72 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=40.4
Q ss_pred CchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCC-CCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTG-RCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 63 ~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~-r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
+++.|.+|+.. ..-.+++.|..|||||... ++|+.+-- ..|-....+++++-+ +..+..+.+-+
T Consensus 3 Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL------------~~Ria~Li~~~~v~p~~IL~lTFT-~kAA~em~~Rl 67 (672)
T PRK10919 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVI------------TNKIAHLIRGCGYQARHIAAVTFT-NKAAREMKERV 67 (672)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHH------------HHHHHHHHHhcCCCHHHeeeEech-HHHHHHHHHHH
Confidence 57889887643 3457889999999999743 33333211 112334467888877 55555555544
Q ss_pred Hh
Q psy7691 142 TE 143 (165)
Q Consensus 142 ~~ 143 (165)
..
T Consensus 68 ~~ 69 (672)
T PRK10919 68 AQ 69 (672)
T ss_pred HH
Confidence 43
No 202
>KOG1802|consensus
Probab=85.03 E-value=3.3 Score=38.12 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=33.3
Q ss_pred HHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 54 HLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 54 ~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.+...|+......|..|...++.--=-+.++|+|+|||..
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvt 441 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVT 441 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceeh
Confidence 4555677788889999999998887677899999999973
No 203
>KOG0947|consensus
Probab=84.91 E-value=1.4 Score=41.86 Aligned_cols=35 Identities=26% Similarity=0.206 Sum_probs=31.7
Q ss_pred hCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccc
Q psy7691 57 GQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 57 ~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~ 92 (165)
...|. +-.+|++||-++.+|..+++.|.|-+|||+
T Consensus 293 ~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTv 327 (1248)
T KOG0947|consen 293 IYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTV 327 (1248)
T ss_pred hCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcch
Confidence 34675 788999999999999999999999999997
No 204
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=84.87 E-value=1.9 Score=39.32 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.1
Q ss_pred CCeeeecccCCcccceeeecCCCC
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPN 101 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~ 101 (165)
.+++++|+||||||..++ +|.
T Consensus 176 ~HvlviapTgSGKgvg~V---iPn 196 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLV---VPT 196 (636)
T ss_pred ceEEEEecCCCCCceEEE---ccc
Confidence 579999999999999999 884
No 205
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=84.80 E-value=0.5 Score=35.08 Aligned_cols=49 Identities=27% Similarity=0.293 Sum_probs=32.1
Q ss_pred eeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 81 VGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 81 ~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
+.--.+|+|||--++ |..+.+++.+-+ .++++.|+ |-.+..+.+.|...
T Consensus 8 ~~d~hpGaGKTr~vl----p~~~~~~i~~~~----------rvLvL~PT-Rvva~em~~aL~~~ 56 (148)
T PF07652_consen 8 VLDLHPGAGKTRRVL----PEIVREAIKRRL----------RVLVLAPT-RVVAEEMYEALKGL 56 (148)
T ss_dssp EEE--TTSSTTTTHH----HHHHHHHHHTT------------EEEEESS-HHHHHHHHHHTTTS
T ss_pred EEecCCCCCCccccc----HHHHHHHHHccC----------eEEEeccc-HHHHHHHHHHHhcC
Confidence 344568999998664 754444443333 47899999 88888888888654
No 206
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=84.34 E-value=3.7 Score=38.06 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=40.1
Q ss_pred CCchHHHHHHHHHHcC-CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSG-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
..++-|..|+..++.+ .-+++++..|+|||..+- . .++.+ . ..|..+.+++|+ ...+..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~----~-----i~~~~-~-----~~g~~V~~~ApT-g~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK----A-----AREAW-E-----AAGYRVIGAALS-GKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH----H-----HHHHH-H-----hCCCeEEEEeCc-HHHHHHHH
Confidence 3789999999988875 446789999999997433 1 11111 1 134568888888 43444444
No 207
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=84.26 E-value=1.8 Score=39.52 Aligned_cols=65 Identities=26% Similarity=0.347 Sum_probs=44.2
Q ss_pred CCCCCchHHHHHHHHHHcCC-----CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHH
Q psy7691 59 GFEEPTAIQAQGWPIALSGR-----DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ 133 (165)
Q Consensus 59 g~~~~t~~Q~~a~~~~l~G~-----di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~ 133 (165)
.|. |+-.|..++..+..|. ..+..+.||||||+.+.+ .+++.+| .+++++|+ ..+
T Consensus 7 ~~~-~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~---------~~~~~~~---------p~Lvi~~n-~~~ 66 (655)
T TIGR00631 7 PFQ-PAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN---------VIAQVNR---------PTLVIAHN-KTL 66 (655)
T ss_pred CCC-CChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH---------HHHHhCC---------CEEEEECC-HHH
Confidence 353 8888998888775552 556789999999986442 4444444 47888888 666
Q ss_pred HHHHHHHHHh
Q psy7691 134 AKELIAVLTE 143 (165)
Q Consensus 134 ~~~i~~~l~~ 143 (165)
+.|+..-+..
T Consensus 67 A~ql~~el~~ 76 (655)
T TIGR00631 67 AAQLYNEFKE 76 (655)
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 208
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=84.25 E-value=0.94 Score=38.31 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=15.0
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.+.-++++++||||||..
T Consensus 133 ~~glilI~GpTGSGKTTt 150 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL 150 (358)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 455788999999999874
No 209
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=83.93 E-value=1.6 Score=36.41 Aligned_cols=37 Identities=30% Similarity=0.099 Sum_probs=24.7
Q ss_pred HHhCCCCCCchHHHHHHHH-HHcCCCeeeecccCCcccce
Q psy7691 55 LKGQGFEEPTAIQAQGWPI-ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 55 l~~~g~~~~t~~Q~~a~~~-~l~G~di~~~a~tgsGKt~~ 93 (165)
+...|. .++.|...+-. +..+.+++++++||||||..
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl 160 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL 160 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 444454 34555544433 45567999999999999973
No 210
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=83.71 E-value=1 Score=41.91 Aligned_cols=55 Identities=29% Similarity=0.471 Sum_probs=39.8
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
.|.. |+++|..+-=.+..|. ++.=.||+|||+... +|. |+.- ..|..+-+++|++
T Consensus 77 ~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~---l~a----~l~a--------l~G~~v~vvT~ne 131 (796)
T PRK12906 77 LGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTAT---LPV----YLNA--------LTGKGVHVVTVNE 131 (796)
T ss_pred hCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHH---HHH----HHHH--------HcCCCeEEEeccH
Confidence 4775 8999988765667775 677889999999766 562 3332 2455788889985
No 211
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=83.69 E-value=1.6 Score=36.33 Aligned_cols=40 Identities=33% Similarity=0.365 Sum_probs=26.9
Q ss_pred HHHHHhCCCCCCchHHHHHHHH-HHcCCCeeeecccCCcccce
Q psy7691 52 LQHLKGQGFEEPTAIQAQGWPI-ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 52 ~~~l~~~g~~~~t~~Q~~a~~~-~l~G~di~~~a~tgsGKt~~ 93 (165)
+..|.+.|+ .++.|...+.. +..+.+++++++||||||..
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl 164 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL 164 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 344445555 34556555543 45668999999999999863
No 212
>PRK10536 hypothetical protein; Provisional
Probab=83.64 E-value=1.3 Score=36.01 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=29.2
Q ss_pred CCCCCchHHHHHHHHHHcCCCeeeecccCCcccceee
Q psy7691 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 59 g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~ 95 (165)
++...+..|...+..+....-+++.++.|+|||...+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISA 92 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4455567888888888887778899999999998543
No 213
>PF13871 Helicase_C_4: Helicase_C-like
Probab=83.58 E-value=8.8 Score=31.45 Aligned_cols=73 Identities=25% Similarity=0.426 Sum_probs=48.1
Q ss_pred HHHHHcCC-CeeeecccC-Ccccce------------eeecCCCCChhHHHHhhccCCCCCCC-CceEEEECCC---cHH
Q psy7691 71 WPIALSGR-DMVGIAQTG-SGKTLA------------VINFDYPNSSEDYIHRIGRTGRCASS-GTAYTFFTPN---NGK 132 (165)
Q Consensus 71 ~~~~l~G~-di~~~a~tg-sGKt~~------------~~~~~lP~~~~~~i~r~gr~~r~~~~-g~~~~~~~p~---~~~ 132 (165)
...++.|. +|++++..| +|-.++ .+...+|-+.+..+|..||+-|.+.. .+.+.++... ++.
T Consensus 54 ~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE~R 133 (278)
T PF13871_consen 54 KQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGERR 133 (278)
T ss_pred HHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHHHH
Confidence 34577774 777666554 676665 35577899999999999999999864 4445555433 244
Q ss_pred HHHHHHHHHHh
Q psy7691 133 QAKELIAVLTE 143 (165)
Q Consensus 133 ~~~~i~~~l~~ 143 (165)
.+.-+.+-+..
T Consensus 134 fas~va~rL~s 144 (278)
T PF13871_consen 134 FASTVARRLES 144 (278)
T ss_pred HHHHHHHHHhh
Confidence 45555555443
No 214
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=83.25 E-value=1.4 Score=37.19 Aligned_cols=34 Identities=29% Similarity=0.168 Sum_probs=28.2
Q ss_pred CCCCCchHHHHHHHHHHcCC-CeeeecccCCcccc
Q psy7691 59 GFEEPTAIQAQGWPIALSGR-DMVGIAQTGSGKTL 92 (165)
Q Consensus 59 g~~~~t~~Q~~a~~~~l~G~-di~~~a~tgsGKt~ 92 (165)
.|...++-|...+-.+.+++ ++++++.||||||.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT 188 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT 188 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH
Confidence 57778888887776666665 99999999999987
No 215
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=83.01 E-value=2.3 Score=39.34 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHcC---C-CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 64 TAIQAQGWPIALSG---R-DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 64 t~~Q~~a~~~~l~G---~-di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
.+.|..++..+.++ . .++..||||.|||.+.+ .+ ..+..-.. ......+..+.|. +....++.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl---~~-----a~~~~~~~---~~~~~r~i~vlP~-~t~ie~~~~ 264 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTGYGKTEASL---IL-----ALALLDEK---IKLKSRVIYVLPF-RTIIEDMYR 264 (733)
T ss_pred hHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHH---HH-----HHHHhhcc---ccccceEEEEccH-HHHHHHHHH
Confidence 56777777777554 3 67789999999999877 44 33333221 1233345555565 777776666
Q ss_pred HHHh
Q psy7691 140 VLTE 143 (165)
Q Consensus 140 ~l~~ 143 (165)
.+..
T Consensus 265 r~~~ 268 (733)
T COG1203 265 RAKE 268 (733)
T ss_pred HHHh
Confidence 6654
No 216
>KOG1803|consensus
Probab=82.91 E-value=3.6 Score=37.21 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=41.4
Q ss_pred CchHHHHHHHHHHcCCC-eeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 63 PTAIQAQGWPIALSGRD-MVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 63 ~t~~Q~~a~~~~l~G~d-i~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
.-+.|..|+..+..-++ .+..+|+|+|||..+. .++++.-- .+..+++..|+.....+-+.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tlv---------EiI~qlvk------~~k~VLVcaPSn~AVdNive 247 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLV---------EIISQLVK------QKKRVLVCAPSNVAVDNIVE 247 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHH---------HHHHHHHH------cCCeEEEEcCchHHHHHHHH
Confidence 34578888888777766 4478999999998654 15555532 34578888898554444444
No 217
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=82.78 E-value=1.7 Score=39.93 Aligned_cols=68 Identities=22% Similarity=0.170 Sum_probs=39.9
Q ss_pred CCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCC-CCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 61 EEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTG-RCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 61 ~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~-r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
..+++.|.+|+.. ....+++.|..|||||... ++|+..-- ..|-....+++++-+ +..+..+.+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L------------~~Ria~Li~~~~v~p~~IL~lTFT-nkAA~em~~ 67 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVL------------THRIAWLLSVENASPHSIMAVTFT-NKAAAEMRH 67 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHH------------HHHHHHHHHcCCCCHHHeEeeecc-HHHHHHHHH
Confidence 3478899987643 3458899999999999742 33332211 112233457777777 444444444
Q ss_pred HHHh
Q psy7691 140 VLTE 143 (165)
Q Consensus 140 ~l~~ 143 (165)
-+..
T Consensus 68 Rl~~ 71 (715)
T TIGR01075 68 RIGA 71 (715)
T ss_pred HHHH
Confidence 4433
No 218
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.59 E-value=0.57 Score=39.43 Aligned_cols=19 Identities=53% Similarity=0.662 Sum_probs=15.9
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
+.-.+++.++|||||||+.
T Consensus 95 L~KSNILLiGPTGsGKTlL 113 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLL 113 (408)
T ss_pred eeeccEEEECCCCCcHHHH
Confidence 4446899999999999984
No 219
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=82.56 E-value=1.7 Score=39.92 Aligned_cols=66 Identities=24% Similarity=0.180 Sum_probs=39.6
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCC-CCCCCCceEEEECCCcHHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTG-RCASSGTAYTFFTPNNGKQAKELIAV 140 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~-r~~~~g~~~~~~~p~~~~~~~~i~~~ 140 (165)
.+++-|.+|+.. ....+++.|..|||||... ++|+.+-- ..|-....++.++-+ +..+..+.+-
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl------------~~Ria~Li~~~~v~p~~IL~lTFT-~kAA~Em~~R 73 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVL------------VHRIAWLMQVENASPYSIMAVTFT-NKAAAEMRHR 73 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHH------------HHHHHHHHHcCCCChhHeEeeecc-HHHHHHHHHH
Confidence 478899997642 3357899999999999742 33332211 112233457777777 4444444444
Q ss_pred HH
Q psy7691 141 LT 142 (165)
Q Consensus 141 l~ 142 (165)
+.
T Consensus 74 l~ 75 (721)
T PRK11773 74 IE 75 (721)
T ss_pred HH
Confidence 43
No 220
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=81.65 E-value=2.3 Score=34.93 Aligned_cols=38 Identities=29% Similarity=0.319 Sum_probs=23.6
Q ss_pred HHHhCCCCCCchHHHHHHHH-HHcCCCeeeecccCCcccce
Q psy7691 54 HLKGQGFEEPTAIQAQGWPI-ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 54 ~l~~~g~~~~t~~Q~~a~~~-~l~G~di~~~a~tgsGKt~~ 93 (165)
.|.+.|. .++.|...+.. +..+.+++++++||||||..
T Consensus 110 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl 148 (299)
T TIGR02782 110 DYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL 148 (299)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 3444443 33444443333 44567899999999999874
No 221
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=81.31 E-value=2.9 Score=38.02 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.0
Q ss_pred CCeeeecccCCcccceeeecCCCC
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPN 101 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~ 101 (165)
.++++.|+||||||..++ +|.
T Consensus 212 ~H~lv~ApTgsGKgvg~V---IPn 232 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVV---VPT 232 (623)
T ss_pred ceEEEEeCCCCCccceee---hhh
Confidence 589999999999999998 883
No 222
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=81.17 E-value=5.1 Score=37.59 Aligned_cols=80 Identities=21% Similarity=0.173 Sum_probs=50.6
Q ss_pred CccccccC-CCcHHHHHHHHhCC-------CCCCchHHHHH-HHHHHcC-CCeeeecccC-----CcccceeeecCCCCC
Q psy7691 38 PTQELTEG-CFPNAVLQHLKGQG-------FEEPTAIQAQG-WPIALSG-RDMVGIAQTG-----SGKTLAVINFDYPNS 102 (165)
Q Consensus 38 ~i~~f~~l-~l~~~l~~~l~~~g-------~~~~t~~Q~~a-~~~~l~G-~di~~~a~tg-----sGKt~~~~~~~lP~~ 102 (165)
....|.+. ...+.+...|++.+ +...+.-|..- -..+.+| ...++|..+= -|-...|++|.-|.+
T Consensus 255 ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~s 334 (814)
T COG1201 255 TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKS 334 (814)
T ss_pred cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHH
Confidence 35677776 57777888888765 22344445432 2334455 2333333221 233347999999999
Q ss_pred hhHHHHhhccCCCCC
Q psy7691 103 SEDYIHRIGRTGRCA 117 (165)
Q Consensus 103 ~~~~i~r~gr~~r~~ 117 (165)
+...+||+||+|..-
T Consensus 335 V~r~lQRiGRsgHr~ 349 (814)
T COG1201 335 VNRFLQRIGRAGHRL 349 (814)
T ss_pred HHHHhHhcccccccc
Confidence 999999999988653
No 223
>PRK13764 ATPase; Provisional
Probab=80.68 E-value=1.4 Score=39.82 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=15.6
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..+..++++++||||||..
T Consensus 255 ~~~~~ILIsG~TGSGKTTl 273 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTF 273 (602)
T ss_pred hcCCEEEEECCCCCCHHHH
Confidence 3456799999999999973
No 224
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=80.23 E-value=2.3 Score=39.96 Aligned_cols=65 Identities=26% Similarity=0.356 Sum_probs=44.5
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.|.+ |+++|..+-=.+..| -++.-.||.|||+.+. +|. |++.+ .|..+-+++++ ..++.+-
T Consensus 73 lG~r-~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~---l~a----yl~aL--------~G~~VhVvT~N-dyLA~RD 133 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVLNDG--KIAEMKTGEGKTLVAT---LPA----YLNAL--------TGKGVHIVTVN-DYLAKRD 133 (870)
T ss_pred hCCC-CCchHhhhhHhhcCC--ccccccCCCCchHHHH---HHH----HHHHh--------cCCceEEEeCC-HHHHHHH
Confidence 5776 899998865344444 4678899999999888 784 66654 24568888888 4555444
Q ss_pred HHHH
Q psy7691 138 IAVL 141 (165)
Q Consensus 138 ~~~l 141 (165)
.+.+
T Consensus 134 ~e~m 137 (870)
T CHL00122 134 QEWM 137 (870)
T ss_pred HHHH
Confidence 4433
No 225
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=79.91 E-value=1.2 Score=34.60 Aligned_cols=20 Identities=40% Similarity=0.499 Sum_probs=16.6
Q ss_pred HcCCCeeeecccCCccccee
Q psy7691 75 LSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~~ 94 (165)
+-++++.+.|.||||||..+
T Consensus 21 l~~~H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 21 LFNRHIAIFGTTGSGKSNTV 40 (229)
T ss_pred hccceEEEECCCCCCHHHHH
Confidence 44689999999999998753
No 226
>KOG4150|consensus
Probab=79.75 E-value=2.5 Score=38.37 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=30.3
Q ss_pred eeeecCCCCChhHHHHhhccCCCCCCCCceEEEEC
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~ 127 (165)
||++...|-+..++-|+.||+||..+.+.++.++.
T Consensus 604 AVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 604 AVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred eEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 89999999999999999999999988877665544
No 227
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=79.64 E-value=1.3 Score=41.60 Aligned_cols=39 Identities=31% Similarity=0.527 Sum_probs=31.3
Q ss_pred cccceeeecCCCC-ChhHHHHhhccCCCCCCCCceEEEEC
Q psy7691 89 GKTLAVINFDYPN-SSEDYIHRIGRTGRCASSGTAYTFFT 127 (165)
Q Consensus 89 GKt~~~~~~~lP~-~~~~~i~r~gr~~r~~~~g~~~~~~~ 127 (165)
|+-.+++++..|. ...++.||.||+||.+..+..+.++.
T Consensus 381 G~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 381 GSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred hhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 3344899999998 67899999999999996666666655
No 228
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=79.54 E-value=1.2 Score=37.30 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.2
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+..+.+++++++||||||..
T Consensus 157 v~~~~nili~G~tgSGKTTl 176 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF 176 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH
Confidence 45678999999999999874
No 229
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=79.43 E-value=1.1 Score=37.84 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=17.2
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+..+.+++++++||||||..
T Consensus 159 v~~~~nilI~G~tGSGKTTl 178 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM 178 (344)
T ss_pred HHcCCeEEEECCCCccHHHH
Confidence 45678999999999999873
No 230
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=78.26 E-value=2.8 Score=31.61 Aligned_cols=31 Identities=26% Similarity=0.214 Sum_probs=21.8
Q ss_pred CchHHHHHHHH-HHcCCCeeeecccCCcccce
Q psy7691 63 PTAIQAQGWPI-ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 63 ~t~~Q~~a~~~-~l~G~di~~~a~tgsGKt~~ 93 (165)
.++.|...+.. +..|..++.++++|+|||..
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445444443 45678899999999999973
No 231
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=78.07 E-value=3.2 Score=34.94 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=25.8
Q ss_pred CchHHHHHHHHH------HcCCCeeeecccCCcccce
Q psy7691 63 PTAIQAQGWPIA------LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 63 ~t~~Q~~a~~~~------l~G~di~~~a~tgsGKt~~ 93 (165)
.+.-|+.+.+.+ ..|..+++.++-|+|||..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l 38 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL 38 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH
Confidence 456788887777 7788899999999999974
No 232
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=77.82 E-value=3.7 Score=35.09 Aligned_cols=94 Identities=13% Similarity=0.213 Sum_probs=53.2
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHcC-CCeeeecccCCcccce-----------------------------------
Q psy7691 50 AVLQHLKGQGFEEPTAIQAQGWPIALSG-RDMVGIAQTGSGKTLA----------------------------------- 93 (165)
Q Consensus 50 ~l~~~l~~~g~~~~t~~Q~~a~~~~l~G-~di~~~a~tgsGKt~~----------------------------------- 93 (165)
.+..+|++.++......-.+++..+... .+|.+++.+|+||+-.
T Consensus 7 ~i~~~l~~g~~~~~~s~i~~~l~~~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p 86 (376)
T PF05049_consen 7 EIEKALEEGNLQEVVSKIREALKDIDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP 86 (376)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC
Confidence 3444555555544333333444444333 5888999999998542
Q ss_pred -eeecCCCC------ChhHHHHhhccCCCCCCCCceEEEECCCc-HHHHHHHHHHHHhcCCCC
Q psy7691 94 -VINFDYPN------SSEDYIHRIGRTGRCASSGTAYTFFTPNN-GKQAKELIAVLTEASQPI 148 (165)
Q Consensus 94 -~~~~~lP~------~~~~~i~r~gr~~r~~~~g~~~~~~~p~~-~~~~~~i~~~l~~~~~~~ 148 (165)
+..||+|- ..++|+++++-. .--.+++++++. .+..-+|.+.+...++++
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~-----~yD~fiii~s~rf~~ndv~La~~i~~~gK~f 144 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEVKFY-----RYDFFIIISSERFTENDVQLAKEIQRMGKKF 144 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHTTGG-----G-SEEEEEESSS--HHHHHHHHHHHHTT-EE
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHcccc-----ccCEEEEEeCCCCchhhHHHHHHHHHcCCcE
Confidence 46678883 277888887642 333566666664 344556677777776664
No 233
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=77.73 E-value=1.1 Score=30.40 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=14.7
Q ss_pred CCCeeeecccCCccccee
Q psy7691 77 GRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~ 94 (165)
+..++..+++|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 456789999999999843
No 234
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.61 E-value=2.6 Score=34.96 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=25.6
Q ss_pred CCCCchHHHH-HHHHHHcCCCeeeecccCCcccce
Q psy7691 60 FEEPTAIQAQ-GWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 60 ~~~~t~~Q~~-a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
+..+++.|.. .|-.+-.+++++.+++||||||..
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~ 159 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL 159 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH
Confidence 3345555543 556677889999999999999974
No 235
>PRK10436 hypothetical protein; Provisional
Probab=77.48 E-value=2.9 Score=36.67 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=13.0
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
-++++++||||||..
T Consensus 220 liLvtGpTGSGKTTt 234 (462)
T PRK10436 220 LILVTGPTGSGKTVT 234 (462)
T ss_pred eEEEECCCCCChHHH
Confidence 578999999999873
No 236
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=77.07 E-value=4.5 Score=39.80 Aligned_cols=61 Identities=25% Similarity=0.264 Sum_probs=36.9
Q ss_pred HHHHHHHHcCC-CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc----HHHHHHHHHHHH
Q psy7691 68 AQGWPIALSGR-DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN----GKQAKELIAVLT 142 (165)
Q Consensus 68 ~~a~~~~l~G~-di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~----~~~~~~i~~~l~ 142 (165)
...|...+.+. .++++|.||||||.. +|. |+...|+. ..| ..+++.+. ++++.++.+.+.
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTTq-----lPq----~lle~g~g----~~g--~I~~TQPRRlAArsLA~RVA~El~ 143 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTTQ-----LPK----ICLELGRG----VKG--LIGHTQPRRLAARTVANRIAEELE 143 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHHH-----HHH----HHHHcCCC----CCC--ceeeCCCcHHHHHHHHHHHHHHHh
Confidence 34455555554 456779999999983 573 56665542 122 33344333 577777777776
Q ss_pred h
Q psy7691 143 E 143 (165)
Q Consensus 143 ~ 143 (165)
.
T Consensus 144 ~ 144 (1294)
T PRK11131 144 T 144 (1294)
T ss_pred h
Confidence 5
No 237
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=76.58 E-value=5.1 Score=37.19 Aligned_cols=65 Identities=29% Similarity=0.224 Sum_probs=45.2
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.|.. |+++|..+.-.++.| + ++.=.||+|||+... +|. |+.- ..|..+-+++|+ .-++.+=
T Consensus 75 lg~r-~ydvQlig~l~Ll~G-~-VaEM~TGEGKTLvA~---l~a----~l~A--------L~G~~VhvvT~N-dyLA~RD 135 (764)
T PRK12326 75 LGLR-PFDVQLLGALRLLAG-D-VIEMATGEGKTLAGA---IAA----AGYA--------LQGRRVHVITVN-DYLARRD 135 (764)
T ss_pred cCCC-cchHHHHHHHHHhCC-C-cccccCCCCHHHHHH---HHH----HHHH--------HcCCCeEEEcCC-HHHHHHH
Confidence 4775 899999988788888 4 456789999999776 662 4442 245578889999 4444444
Q ss_pred HHHH
Q psy7691 138 IAVL 141 (165)
Q Consensus 138 ~~~l 141 (165)
.+.+
T Consensus 136 ae~m 139 (764)
T PRK12326 136 AEWM 139 (764)
T ss_pred HHHH
Confidence 4333
No 238
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.38 E-value=2.6 Score=37.21 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=22.0
Q ss_pred HHhCCCCCCchHHHHHHHHHHcCCC--eeeecccCCcccce
Q psy7691 55 LKGQGFEEPTAIQAQGWPIALSGRD--MVGIAQTGSGKTLA 93 (165)
Q Consensus 55 l~~~g~~~~t~~Q~~a~~~~l~G~d--i~~~a~tgsGKt~~ 93 (165)
|.+.||. +.|...+-.++..-. +++.+|||||||..
T Consensus 237 l~~Lg~~---~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 237 LEKLGMS---PFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred HHHhCCC---HHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 4444543 345454444444332 67899999999874
No 239
>KOG1132|consensus
Probab=76.33 E-value=3.6 Score=38.70 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=49.5
Q ss_pred CchHHHHHHHH----HHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhc-cC-----------------C------
Q psy7691 63 PTAIQAQGWPI----ALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIG-RT-----------------G------ 114 (165)
Q Consensus 63 ~t~~Q~~a~~~----~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~g-r~-----------------~------ 114 (165)
|++.|..-... +.++.+.+.-+|||+|||++.+.--++ |.++.. |. +
T Consensus 22 pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LA-----W~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 22 PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLA-----WQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHH-----HHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 67888764443 345567888999999999976533333 333221 00 0
Q ss_pred -------CCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCC
Q psy7691 115 -------RCASSGTAYTFFTPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 115 -------r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
++...|..-.++..-+-.++.|+.+-++...=.+
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~v 137 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRV 137 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCC
Confidence 1112345556666666778888888887765543
No 240
>PRK09401 reverse gyrase; Reviewed
Probab=76.32 E-value=0.66 Score=45.08 Aligned_cols=77 Identities=12% Similarity=-0.015 Sum_probs=47.3
Q ss_pred CccccccC-CC---cHHHHHHHHhCCCCCCch--HHHHHHHHHHcCC-Ceeeec-----ccCCc-----ccceeeecCCC
Q psy7691 38 PTQELTEG-CF---PNAVLQHLKGQGFEEPTA--IQAQGWPIALSGR-DMVGIA-----QTGSG-----KTLAVINFDYP 100 (165)
Q Consensus 38 ~i~~f~~l-~l---~~~l~~~l~~~g~~~~t~--~Q~~a~~~~l~G~-di~~~a-----~tgsG-----Kt~~~~~~~lP 100 (165)
..+.|... .- .+++.+.|...||..-.- -...++..+..|. |+++.. .-+.| ..-.++|||+|
T Consensus 330 ~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP 409 (1176)
T PRK09401 330 GGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGFERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVP 409 (1176)
T ss_pred CEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcHHHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCC
Confidence 34555543 33 788899999999864311 1123445566663 455441 11222 12268999999
Q ss_pred C------ChhHHHHhhccCC
Q psy7691 101 N------SSEDYIHRIGRTG 114 (165)
Q Consensus 101 ~------~~~~~i~r~gr~~ 114 (165)
. ..+.|.||++|+.
T Consensus 410 ~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 410 KFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred CEEEeccccccCHHHHHHHH
Confidence 8 5788999999974
No 241
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=76.07 E-value=4 Score=37.56 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=23.9
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.+++.|.+|+.. ....+++.|..|||||..
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~ 33 (726)
T TIGR01073 4 HLNPEQREAVKT--TEGPLLIMAGAGSGKTRV 33 (726)
T ss_pred ccCHHHHHHHhC--CCCCEEEEeCCCCCHHHH
Confidence 478899988743 345789999999999974
No 242
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=75.94 E-value=2.3 Score=34.06 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=20.8
Q ss_pred HHHHHHHcCCCeeeecccCCcccce
Q psy7691 69 QGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 69 ~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.+...+..|.+++..+++|+|||..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~l 37 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTL 37 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHH
Confidence 4455677889999999999999984
No 243
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=75.19 E-value=1.1 Score=36.38 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=18.2
Q ss_pred HHcCCCeeeecccCCccccee
Q psy7691 74 ALSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~~ 94 (165)
+..++.++.++++|+|||..+
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHH
T ss_pred HHcCCcEEEECCCCCchhHHH
Confidence 467889999999999999854
No 244
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=74.99 E-value=3.1 Score=28.48 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=15.0
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
+..++..+++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999974
No 245
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=74.74 E-value=1.8 Score=39.63 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.7
Q ss_pred CCeeeecccCCcccceeeecCCCC
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPN 101 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~ 101 (165)
.+++++|+||||||..++ +|.
T Consensus 145 ~hvLviApTrSGKgvg~V---IPn 165 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLV---VPT 165 (663)
T ss_pred ceEEEEecCCCCcceeEe---hhh
Confidence 579999999999999998 773
No 246
>KOG0949|consensus
Probab=74.30 E-value=8.3 Score=37.12 Aligned_cols=70 Identities=20% Similarity=0.199 Sum_probs=50.0
Q ss_pred CCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 59 g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
+| +|-..|.+..+.+-++...+++|||-+|||..- |- ++..+-|- ...-+++++.|+ ..+..|+.
T Consensus 509 dF-~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-----fY----~iEKVLRe----sD~~VVIyvaPt-KaLVnQvs 573 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-----FY----AIEKVLRE----SDSDVVIYVAPT-KALVNQVS 573 (1330)
T ss_pred cc-CCcHHHHHHhhhhhcccceEEEeeccCCceecc-----HH----HHHHHHhh----cCCCEEEEecch-HHHhhhhh
Confidence 45 377789999999999999999999999999732 20 23345453 344578888888 66777766
Q ss_pred HHHHh
Q psy7691 139 AVLTE 143 (165)
Q Consensus 139 ~~l~~ 143 (165)
..+..
T Consensus 574 a~Vya 578 (1330)
T KOG0949|consen 574 ANVYA 578 (1330)
T ss_pred HHHHH
Confidence 55543
No 247
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=73.60 E-value=3 Score=31.56 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=20.3
Q ss_pred HHHHHHHcCCC--eeeecccCCccccee
Q psy7691 69 QGWPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 69 ~a~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
.++..++.|.| +++-++||+|||...
T Consensus 14 ~~v~~~~~G~n~~i~~yG~tGsGKT~Tm 41 (186)
T cd01363 14 PLLQSALDGYNVCIFAYGQTGSGKTYTM 41 (186)
T ss_pred HHHHHHhCCcceeEEEECCCCCcceEec
Confidence 45566788866 778999999999654
No 248
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=73.39 E-value=9.6 Score=34.83 Aligned_cols=90 Identities=23% Similarity=0.209 Sum_probs=49.8
Q ss_pred cCCCcHHHHH-HHHhCCCCCC----chHHHHHHHHH--HcCCCeeeecccCCcccceeeecCCCCChhHHHHhhcc---C
Q psy7691 44 EGCFPNAVLQ-HLKGQGFEEP----TAIQAQGWPIA--LSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGR---T 113 (165)
Q Consensus 44 ~l~l~~~l~~-~l~~~g~~~~----t~~Q~~a~~~~--l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr---~ 113 (165)
+.+..++++. .|.+.--..+ ..+|.+==..+ -.+.-+++++..|||||..- +||+.- .
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiA------------LHRvAyLlY~ 253 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIA------------LHRVAYLLYG 253 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHH------------HHHHHHHHhc
Confidence 3455555554 4665433332 23454422222 23345789999999999742 444420 1
Q ss_pred CCCCCCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 114 GRCASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 114 ~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
-|.--.+..++++.|. +-.+..|.+.|-..+.
T Consensus 254 ~R~~l~~k~vlvl~PN-~vFleYis~VLPeLGe 285 (747)
T COG3973 254 YRGPLQAKPVLVLGPN-RVFLEYISRVLPELGE 285 (747)
T ss_pred cccccccCceEEEcCc-HHHHHHHHHhchhhcc
Confidence 1222233448889998 6667777777665543
No 249
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.33 E-value=4.3 Score=35.76 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=22.3
Q ss_pred HHHhCCCCCCchHHHHHHHHHHcCC--CeeeecccCCcccce
Q psy7691 54 HLKGQGFEEPTAIQAQGWPIALSGR--DMVGIAQTGSGKTLA 93 (165)
Q Consensus 54 ~l~~~g~~~~t~~Q~~a~~~~l~G~--di~~~a~tgsGKt~~ 93 (165)
.|.+.|| ++.|.+.+..++... -++++++||||||..
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 3455565 334444444444332 367999999999874
No 250
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=72.80 E-value=13 Score=36.07 Aligned_cols=76 Identities=18% Similarity=0.060 Sum_probs=46.9
Q ss_pred cHHHHHHHHhCCCCCCchHHHHHHHHHHcC-CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEE
Q psy7691 48 PNAVLQHLKGQGFEEPTAIQAQGWPIALSG-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFF 126 (165)
Q Consensus 48 ~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~ 126 (165)
.+..+++....++ ..++-|..|+..+..+ .-.++++..|+|||..+- .+.++-. ..|..+..+
T Consensus 368 ~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~----------~~~~~~e-----~~G~~V~g~ 431 (1102)
T PRK13826 368 REAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK----------AAREAWE-----AAGYRVVGG 431 (1102)
T ss_pred CHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH----------HHHHHHH-----HcCCeEEEE
Confidence 3444444444445 4799999999887543 446789999999997533 1222111 134567788
Q ss_pred CCCcHHHHHHHHHH
Q psy7691 127 TPNNGKQAKELIAV 140 (165)
Q Consensus 127 ~p~~~~~~~~i~~~ 140 (165)
.|+ -..+..|.+.
T Consensus 432 ApT-gkAA~~L~e~ 444 (1102)
T PRK13826 432 ALA-GKAAEGLEKE 444 (1102)
T ss_pred cCc-HHHHHHHHHh
Confidence 888 5555555543
No 251
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=72.63 E-value=5 Score=36.58 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=16.0
Q ss_pred cCCCeeeecccCCccccee
Q psy7691 76 SGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~ 94 (165)
.-.+++++++||+|||..+
T Consensus 175 ~~~H~lv~G~TGsGKT~l~ 193 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLA 193 (634)
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3468999999999999864
No 252
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=71.89 E-value=1.6 Score=34.73 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.0
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..+..++.+++||||||..
T Consensus 125 ~~~~~ili~G~tGSGKTT~ 143 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL 143 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH
T ss_pred ccceEEEEECCCccccchH
Confidence 3467899999999999874
No 253
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=71.69 E-value=5.9 Score=36.23 Aligned_cols=57 Identities=21% Similarity=0.171 Sum_probs=37.0
Q ss_pred cCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc-HHHHHHHHHHHHhcCCC
Q psy7691 76 SGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN-GKQAKELIAVLTEASQP 147 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~-~~~~~~i~~~l~~~~~~ 147 (165)
+-.+.+++++||+|||....+ ++.+.-+ .|..+.++.|.. .+++..+...+...+.+
T Consensus 179 ~~gHtlV~GtTGsGKT~l~~~---------li~q~i~------~g~~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 179 RVGHTLVLGTTRVGKTRLAEL---------LITQDIR------RGDVVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred ccCceEEECCCCCCHHHHHHH---------HHHHHHH------cCCeEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 445789999999999986431 2222212 234677777763 56777777777776664
No 254
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=71.58 E-value=8.3 Score=32.51 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=18.3
Q ss_pred CCCccccccCCCcHHHHHHHHhCCCCC
Q psy7691 36 PCPTQELTEGCFPNAVLQHLKGQGFEE 62 (165)
Q Consensus 36 p~~i~~f~~l~l~~~l~~~l~~~g~~~ 62 (165)
+.++......++.+...+.|++.||.+
T Consensus 28 ~~~~~~l~~~g~~~~~~~kL~~~g~~t 54 (344)
T PLN03187 28 FESIDKLISQGINAGDVKKLQDAGIYT 54 (344)
T ss_pred ccCHHHHhhCCCCHHHHHHHHHcCCCc
Confidence 444555556677777777787777765
No 255
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=71.40 E-value=4.4 Score=36.33 Aligned_cols=36 Identities=31% Similarity=0.342 Sum_probs=22.5
Q ss_pred HHhCCCCCCchHHHHHHHHHHcC--CCeeeecccCCcccce
Q psy7691 55 LKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 55 l~~~g~~~~t~~Q~~a~~~~l~G--~di~~~a~tgsGKt~~ 93 (165)
|.+.||. +.|...+..++.. --++++++||||||..
T Consensus 295 l~~lg~~---~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt 332 (564)
T TIGR02538 295 IDKLGFE---PDQKALFLEAIHKPQGMVLVTGPTGSGKTVS 332 (564)
T ss_pred HHHcCCC---HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 5566663 3444444444332 3477999999999864
No 256
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=70.47 E-value=3 Score=32.09 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=30.1
Q ss_pred eeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCC--cHHHHHHHHHHHHhcCCCC
Q psy7691 80 MVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN--NGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 80 i~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~--~~~~~~~i~~~l~~~~~~~ 148 (165)
++.+++||+|||..+.- +-.+... .+..+.+++-. +-....|+..+.+..+.++
T Consensus 4 i~lvGptGvGKTTt~aK---------LAa~~~~------~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAK---------LAARLKL------KGKKVALISADTYRIGAVEQLKTYAEILGVPF 59 (196)
T ss_dssp EEEEESTTSSHHHHHHH---------HHHHHHH------TT--EEEEEESTSSTHHHHHHHHHHHHHTEEE
T ss_pred EEEECCCCCchHhHHHH---------HHHHHhh------ccccceeecCCCCCccHHHHHHHHHHHhcccc
Confidence 46789999999986531 1122211 12334454433 3456667777777766553
No 257
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=70.09 E-value=22 Score=34.46 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=55.6
Q ss_pred CccccccC-CCcHHHHHHHHhCCCCC-----Cch--HHHHHHHHHHcC-CC--ee--eecccCCcccc----eeeecCCC
Q psy7691 38 PTQELTEG-CFPNAVLQHLKGQGFEE-----PTA--IQAQGWPIALSG-RD--MV--GIAQTGSGKTL----AVINFDYP 100 (165)
Q Consensus 38 ~i~~f~~l-~l~~~l~~~l~~~g~~~-----~t~--~Q~~a~~~~l~G-~d--i~--~~a~tgsGKt~----~~~~~~lP 100 (165)
.++.|++. .+-..|...|...||.- .++ .-..++..+... .+ ++ ....-|.|=++ .||+||+|
T Consensus 489 KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~d 568 (1033)
T PLN03142 489 RVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSD 568 (1033)
T ss_pred eEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCC
Confidence 46778775 45555555566666532 122 223456666432 11 22 22222345433 68999999
Q ss_pred CChhHHHHhhccCCCCCCCCce--EEEECCCc
Q psy7691 101 NSSEDYIHRIGRTGRCASSGTA--YTFFTPNN 130 (165)
Q Consensus 101 ~~~~~~i~r~gr~~r~~~~g~~--~~~~~p~~ 130 (165)
=++...+|+++|.-|-|.+..+ +-+++..+
T Consensus 569 WNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 569 WNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred CChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 9999999999999999977664 34455443
No 258
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=69.95 E-value=8.4 Score=35.19 Aligned_cols=65 Identities=25% Similarity=0.310 Sum_probs=42.7
Q ss_pred CCCCCCchHHHHHHHHHHcCC-----CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSGR-----DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGK 132 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~-----di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~ 132 (165)
..|. |+..|..++..+..+. ..++.+.+|+||++.+.+ +....+ ..+++++|+ ..
T Consensus 9 ~~~~-~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~---------l~~~~~---------r~vLIVt~~-~~ 68 (652)
T PRK05298 9 SPYK-PAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN---------VIARLQ---------RPTLVLAHN-KT 68 (652)
T ss_pred cCCC-CChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH---------HHHHhC---------CCEEEEECC-HH
Confidence 3564 8999999988875442 456889999999985431 233332 258888888 55
Q ss_pred HHHHHHHHHH
Q psy7691 133 QAKELIAVLT 142 (165)
Q Consensus 133 ~~~~i~~~l~ 142 (165)
.+.++.+-+.
T Consensus 69 ~A~~l~~dL~ 78 (652)
T PRK05298 69 LAAQLYSEFK 78 (652)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 259
>PRK09183 transposase/IS protein; Provisional
Probab=69.51 E-value=5 Score=32.20 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.5
Q ss_pred HHcCCCeeeecccCCcccc
Q psy7691 74 ALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~ 92 (165)
+-+|.+++..+++|+|||-
T Consensus 99 i~~~~~v~l~Gp~GtGKTh 117 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTH 117 (259)
T ss_pred hhcCCeEEEEeCCCCCHHH
Confidence 4567889999999999996
No 260
>KOG0923|consensus
Probab=69.40 E-value=10 Score=35.05 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=28.2
Q ss_pred CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
.=+++.+.||||||.- +|. |+|.-|-+. .|.-+..--|-.
T Consensus 281 QVLiI~GeTGSGKTTQ-----iPQ----yL~EaGytk----~gk~IgcTQPRR 320 (902)
T KOG0923|consen 281 QVLIIVGETGSGKTTQ-----IPQ----YLYEAGYTK----GGKKIGCTQPRR 320 (902)
T ss_pred cEEEEEcCCCCCcccc-----ccH----HHHhccccc----CCceEeecCcch
Confidence 3477899999999985 784 999999873 333344444553
No 261
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=69.21 E-value=14 Score=36.54 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=28.9
Q ss_pred hCCCCCCchHHH--HHHHHHHcC-CCeeeecccCCcccceeeecCCCCChhHHHHhhcc
Q psy7691 57 GQGFEEPTAIQA--QGWPIALSG-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGR 112 (165)
Q Consensus 57 ~~g~~~~t~~Q~--~a~~~~l~G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr 112 (165)
...|...-|+.. ..|...+.+ ..++++|+||||||.- +|. |+...|+
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq-----lPq----~lle~~~ 108 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ-----LPK----ICLELGR 108 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH-----HHH----HHHHcCC
Confidence 345665556554 344444444 4567889999999984 563 5555554
No 262
>KOG2373|consensus
Probab=69.13 E-value=2.1 Score=36.55 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=21.2
Q ss_pred HHHHHHHH---HcC----CCeeeecccCCcccceeeecCC
Q psy7691 67 QAQGWPIA---LSG----RDMVGIAQTGSGKTLAVINFDY 99 (165)
Q Consensus 67 Q~~a~~~~---l~G----~di~~~a~tgsGKt~~~~~~~l 99 (165)
|+..+|.+ +.| .=.+-.++||||||....-|.+
T Consensus 256 ~WkRFpvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsL 295 (514)
T KOG2373|consen 256 QWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSL 295 (514)
T ss_pred eehhhhHHHHHhccCCCCceEEEecCCCCCceeEehHhhH
Confidence 44555543 444 4466799999999986554443
No 263
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=68.85 E-value=8.5 Score=31.27 Aligned_cols=56 Identities=29% Similarity=0.440 Sum_probs=36.8
Q ss_pred hCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 57 GQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 57 ~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
..|+. |.+.|..+.=.+..|. ++.=.||-|||+... +|. |++-+ .|..+-+++.++
T Consensus 73 ~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~---l~a----~~~AL--------~G~~V~vvT~Nd 128 (266)
T PF07517_consen 73 TLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAA---LPA----ALNAL--------QGKGVHVVTSND 128 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHH---HHH----HHHHT--------TSS-EEEEESSH
T ss_pred HcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHH---HHH----HHHHH--------hcCCcEEEeccH
Confidence 35775 8999999886677775 667789999999776 552 44433 345677788774
No 264
>PRK05973 replicative DNA helicase; Provisional
Probab=68.81 E-value=2.1 Score=34.21 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=31.6
Q ss_pred CCCcHHHHHHHHhCCCCCCchHHHHH---------HHHHHcCCCeeeecccCCcccce
Q psy7691 45 GCFPNAVLQHLKGQGFEEPTAIQAQG---------WPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 45 l~l~~~l~~~l~~~g~~~~t~~Q~~a---------~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
+.+++.+-+.-.+-||...+-....+ +.-+..|.-+++.|++|+|||..
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~l 80 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLL 80 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHH
Confidence 34666666666667887765544332 11223445678899999999984
No 265
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=68.37 E-value=8.1 Score=34.32 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=30.7
Q ss_pred CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHH
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
.+.+++-|||-|||..-. += ...|... ..| -+++++|+. .+..|=.+.+.
T Consensus 30 ~NtLvvlPTGLGKT~IA~---~V-----~~~~l~~-----~~~-kvlfLAPTK-PLV~Qh~~~~~ 79 (542)
T COG1111 30 KNTLVVLPTGLGKTFIAA---MV-----IANRLRW-----FGG-KVLFLAPTK-PLVLQHAEFCR 79 (542)
T ss_pred cCeEEEecCCccHHHHHH---HH-----HHHHHHh-----cCC-eEEEecCCc-hHHHHHHHHHH
Confidence 488999999999998332 11 2233322 233 789999994 44444444443
No 266
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=67.95 E-value=5 Score=33.48 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=19.7
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.+ +++-++||||||..++
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~ 106 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTML 106 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEc
Confidence 345578866 7899999999998764
No 267
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=67.95 E-value=5.1 Score=29.57 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=12.9
Q ss_pred eeeecccCCcccceee
Q psy7691 80 MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 80 i~~~a~tgsGKt~~~~ 95 (165)
+++.+++|+|||....
T Consensus 2 ~li~G~~G~GKT~l~~ 17 (187)
T cd01124 2 TLLSGGPGTGKTTFAL 17 (187)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 5678999999998443
No 268
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=67.94 E-value=2.5 Score=32.35 Aligned_cols=14 Identities=36% Similarity=0.518 Sum_probs=11.9
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
++.+++||||||..
T Consensus 4 ilI~GptGSGKTTl 17 (198)
T cd01131 4 VLVTGPTGSGKSTT 17 (198)
T ss_pred EEEECCCCCCHHHH
Confidence 56899999999874
No 269
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=67.87 E-value=4.4 Score=39.38 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.1
Q ss_pred eeeecCCCCChhHHHHhhccCCCCCC
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCAS 118 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~~ 118 (165)
.++.++.+.+...|+|++||..|...
T Consensus 777 ~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 777 NLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred EEEEecCCCCHHHHHHHHhhhccCCc
Confidence 67778888889999999999988754
No 270
>KOG1133|consensus
Probab=67.84 E-value=3.9 Score=37.63 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=24.2
Q ss_pred CCchHHHHHH----HHHHcCCCeeeecccCCcccceee
Q psy7691 62 EPTAIQAQGW----PIALSGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 62 ~~t~~Q~~a~----~~~l~G~di~~~a~tgsGKt~~~~ 95 (165)
+|+.||..-. ..+-.|.=-+--+|||+|||+.++
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLi 52 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLI 52 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHH
Confidence 3788997533 334567655568999999999764
No 271
>COG1204 Superfamily II helicase [General function prediction only]
Probab=67.83 E-value=9.4 Score=35.66 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=21.9
Q ss_pred CCCChhHHHHhhccCCCCCCC--CceEEEECCC
Q psy7691 99 YPNSSEDYIHRIGRTGRCASS--GTAYTFFTPN 129 (165)
Q Consensus 99 lP~~~~~~i~r~gr~~r~~~~--g~~~~~~~p~ 129 (165)
.+.+.-+|+|-.||+||.|-. |.++++.+..
T Consensus 376 ~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 376 VDIPVLDVLQMAGRAGRPGYDDYGEAIILATSH 408 (766)
T ss_pred EECchhhHhhccCcCCCCCcCCCCcEEEEecCc
Confidence 344577899999999999954 4455555444
No 272
>PF12846 AAA_10: AAA-like domain
Probab=67.58 E-value=2 Score=33.99 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=13.8
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
.++++++.||+|||.+
T Consensus 2 ~h~~i~G~tGsGKT~~ 17 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTL 17 (304)
T ss_pred CeEEEECCCCCcHHHH
Confidence 4678999999999985
No 273
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=67.27 E-value=5.5 Score=32.87 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=20.0
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.| +++-++||||||..++
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm~ 99 (319)
T cd01376 73 VPHLLSGQNATVFAYGSTGAGKTHTML 99 (319)
T ss_pred HHHHhCCCceEEEEECCCCCCCcEEEe
Confidence 445788876 7788999999998764
No 274
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=67.21 E-value=6.1 Score=31.83 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=22.9
Q ss_pred HHHhCCCCCCchHHHHHHHHHHc-C-CCeeeecccCCcccce
Q psy7691 54 HLKGQGFEEPTAIQAQGWPIALS-G-RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 54 ~l~~~g~~~~t~~Q~~a~~~~l~-G-~di~~~a~tgsGKt~~ 93 (165)
.|.+.|+. +.|.+.+..++. . .-++++++||||||..
T Consensus 58 ~l~~lg~~---~~~~~~l~~~~~~~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 58 DLEKLGLK---PENLEIFRKLLEKPHGIILVTGPTGSGKTTT 96 (264)
T ss_pred CHHHcCCC---HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH
Confidence 35556653 344444443432 2 3478999999999874
No 275
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=67.13 E-value=5.4 Score=33.47 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=19.9
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.+ |++.++||||||...+
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~ 107 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMM 107 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEec
Confidence 445678876 7789999999998764
No 276
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=67.11 E-value=3.1 Score=38.49 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=31.4
Q ss_pred cHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 48 PNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 48 ~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
+.++.+.+++.|-..+..+=...+|.-+..++++.++.||||||.+
T Consensus 156 ~~~l~k~lk~~~~~s~i~I~gvPip~~~E~~H~li~GttGSGKS~~ 201 (732)
T PRK13700 156 PKDVARMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEV 201 (732)
T ss_pred HHHHHHHHHhcCCCCCeeEccccCCcchhhcceEEeCCCCCCHHHH
Confidence 4677777877654433333333344456678999999999999985
No 277
>PRK06526 transposase; Provisional
Probab=66.76 E-value=3.3 Score=33.27 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=16.7
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+-.+.+++.++++|+|||-.
T Consensus 95 i~~~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHL 114 (254)
T ss_pred hhcCceEEEEeCCCCchHHH
Confidence 34667999999999999963
No 278
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=66.73 E-value=3.2 Score=34.14 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=17.0
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+..|..++.+++||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 34678999999999999873
No 279
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=65.93 E-value=6 Score=32.98 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=19.6
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.+ +++-++||||||..++
T Consensus 67 v~~~~~G~n~ti~aYGqTGSGKTyTm~ 93 (337)
T cd01373 67 VEDCLSGYNGSIFAYGQTGSGKTYTMM 93 (337)
T ss_pred HHHHhCCCceeEEEeCCCCCCceEEec
Confidence 445678876 7789999999997664
No 280
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=65.89 E-value=5.6 Score=33.27 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=19.3
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.+ +++-++||||||..++
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~ 107 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQ 107 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEec
Confidence 344578866 7788999999998754
No 281
>KOG1533|consensus
Probab=65.82 E-value=5 Score=32.47 Aligned_cols=13 Identities=46% Similarity=0.572 Sum_probs=11.2
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
-++++|+|||||.
T Consensus 5 qvVIGPPgSGKsT 17 (290)
T KOG1533|consen 5 QVVIGPPGSGKST 17 (290)
T ss_pred eEEEcCCCCCccc
Confidence 3679999999987
No 282
>PRK14701 reverse gyrase; Provisional
Probab=65.79 E-value=1.4 Score=44.34 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=44.1
Q ss_pred cHHHHHHHHhCCCCCCch--HHHHHHHHHHcCC-Ceeeeccc--C---Cc-----ccceeeecCCCC---ChhHHHHhh-
Q psy7691 48 PNAVLQHLKGQGFEEPTA--IQAQGWPIALSGR-DMVGIAQT--G---SG-----KTLAVINFDYPN---SSEDYIHRI- 110 (165)
Q Consensus 48 ~~~l~~~l~~~g~~~~t~--~Q~~a~~~~l~G~-di~~~a~t--g---sG-----Kt~~~~~~~lP~---~~~~~i~r~- 110 (165)
++++.+.|...||....- --..++..+.+|. ++++...+ | .| ..-.++|||+|. +.+.|-+..
T Consensus 346 ae~la~~L~~~Gi~a~~~h~~R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~ 425 (1638)
T PRK14701 346 AEEIEKYLLEDGFKIELVSAKNKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIY 425 (1638)
T ss_pred HHHHHHHHHHCCCeEEEecchHHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchh
Confidence 578999999999974211 1123445555553 33322210 1 22 223789999998 666555554
Q ss_pred ------------ccCCCCCCCCceE
Q psy7691 111 ------------GRTGRCASSGTAY 123 (165)
Q Consensus 111 ------------gr~~r~~~~g~~~ 123 (165)
+|++|.|....+.
T Consensus 426 ~~~~~~~~~~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 426 RILGLLSEILKIEEELKEGIPIEGV 450 (1638)
T ss_pred hhhcchHHHHHhhhhcccCCcchhH
Confidence 7777777654444
No 283
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=65.64 E-value=3 Score=29.37 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=11.9
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
++.++++|||||..
T Consensus 2 ii~~G~pgsGKSt~ 15 (143)
T PF13671_consen 2 IILCGPPGSGKSTL 15 (143)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999873
No 284
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=65.14 E-value=5.5 Score=32.93 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=19.5
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
+..++.|.+ +++-++||||||....
T Consensus 77 v~~~~~G~n~~i~ayGqtGSGKTyTm~ 103 (322)
T cd01367 77 IPHVFEGGVATCFAYGQTGSGKTYTML 103 (322)
T ss_pred HHHHhCCCceEEEeccCCCCCCceEec
Confidence 445678866 7789999999998654
No 285
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=64.96 E-value=3.2 Score=28.43 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=11.7
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
|++.+++|||||..
T Consensus 2 I~I~G~~gsGKST~ 15 (121)
T PF13207_consen 2 IIISGPPGSGKSTL 15 (121)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999873
No 286
>PRK14530 adenylate kinase; Provisional
Probab=64.78 E-value=3.1 Score=32.08 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=15.3
Q ss_pred HcCCCeeeecccCCcccc
Q psy7691 75 LSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~ 92 (165)
++|..++.++++|||||.
T Consensus 1 ~~~~~I~i~G~pGsGKsT 18 (215)
T PRK14530 1 MSQPRILLLGAPGAGKGT 18 (215)
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 356778999999999986
No 287
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=64.64 E-value=12 Score=35.69 Aligned_cols=55 Identities=27% Similarity=0.475 Sum_probs=39.5
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
.|.. |+++|..+--.+..|. ++.-.||.|||+... ||. |++-+ .|..+-++++++
T Consensus 82 lG~r-~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~at---lpa----ylnAL--------~GkgVhVVTvNd 136 (939)
T PRK12902 82 LGMR-HFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVAT---LPS----YLNAL--------TGKGVHVVTVND 136 (939)
T ss_pred hCCC-cchhHHHhhhhhcCCc--eeeecCCCChhHHHH---HHH----HHHhh--------cCCCeEEEeCCH
Confidence 4775 7999987654555553 568899999999887 774 66433 445688888884
No 288
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=64.39 E-value=2.5 Score=29.08 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=11.8
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
++..++.|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 46789999999984
No 289
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=64.39 E-value=26 Score=32.12 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=51.2
Q ss_pred ccccccC-CCcHHHHHHHHhCCCCCC------chHHHHHHHHHHcCC--Ceeee-cccCCcccceeeecCCCC-------
Q psy7691 39 TQELTEG-CFPNAVLQHLKGQGFEEP------TAIQAQGWPIALSGR--DMVGI-AQTGSGKTLAVINFDYPN------- 101 (165)
Q Consensus 39 i~~f~~l-~l~~~l~~~l~~~g~~~~------t~~Q~~a~~~~l~G~--di~~~-a~tgsGKt~~~~~~~lP~------- 101 (165)
.+.|... .-|..+...|...|++.- ...|++.+....... ++++. |.-|.| .|.|.
T Consensus 443 tIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AG-------VDFPASQVIFEs 515 (830)
T COG1202 443 TIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAG-------VDFPASQVIFES 515 (830)
T ss_pred eEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcC-------CCCchHHHHHHH
Confidence 4566554 678899999998888652 224554444332222 22221 111122 22332
Q ss_pred --------ChhHHHHhhccCCCCC--CCCceEEEECCCc
Q psy7691 102 --------SSEDYIHRIGRTGRCA--SSGTAYTFFTPNN 130 (165)
Q Consensus 102 --------~~~~~i~r~gr~~r~~--~~g~~~~~~~p~~ 130 (165)
++-.|.|.+||+||.+ ..|.+++++-|..
T Consensus 516 LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 516 LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 2567899999999988 4688888888875
No 290
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=64.22 E-value=3.3 Score=28.68 Aligned_cols=19 Identities=37% Similarity=0.349 Sum_probs=12.6
Q ss_pred CCCeeeecccCCcccceee
Q psy7691 77 GRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~~ 95 (165)
+.-+++.+++|+|||...-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4567899999999998543
No 291
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=64.18 E-value=8.3 Score=33.68 Aligned_cols=37 Identities=22% Similarity=0.574 Sum_probs=26.6
Q ss_pred HHhCCCCCCchH---HH-----HHHHHHHcCCCeeeecccCCcccc
Q psy7691 55 LKGQGFEEPTAI---QA-----QGWPIALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 55 l~~~g~~~~t~~---Q~-----~a~~~~l~G~di~~~a~tgsGKt~ 92 (165)
|.+.||. |+.. |. ..+|.+-++.|++..+|+|+|||-
T Consensus 180 lrSiG~~-P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKTh 224 (449)
T TIGR02688 180 IRSIGYE-PEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSY 224 (449)
T ss_pred HHhcCCC-cccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHH
Confidence 5667886 4432 11 234677888999999999999994
No 292
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.10 E-value=8.9 Score=32.87 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=34.5
Q ss_pred CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc--HHHHHHHHHHHHhcCCCC
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN--GKQAKELIAVLTEASQPI 148 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~--~~~~~~i~~~l~~~~~~~ 148 (165)
..++.+++||+|||..... +-.+... +.+..|..+.+++-.. .....|+..+.+..+.++
T Consensus 175 ~vi~lvGptGvGKTTT~aK---------LA~~~~~--~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAK---------LAAIYGI--NSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHH---------HHHHHHh--hhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce
Confidence 4578899999999985431 1122211 1112344555555443 345667887777766664
No 293
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=63.67 E-value=4.9 Score=32.26 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=33.3
Q ss_pred cCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 76 SGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
++.+++..+++|+|||-..+ . +-+++.+ .|..+++++-+ +++.+|......
T Consensus 104 ~~~nl~l~G~~G~GKThLa~----A-----i~~~l~~------~g~sv~f~~~~--el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAI----A-----IGNELLK------AGISVLFITAP--DLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHH----H-----HHHHHHH------cCCeEEEEEHH--HHHHHHHHHHhc
Confidence 77899999999999997433 1 4445532 35677777655 555555554443
No 294
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=63.34 E-value=12 Score=31.41 Aligned_cols=39 Identities=26% Similarity=0.136 Sum_probs=25.2
Q ss_pred HHHHHhCCCCCCchHHHHHHHH-HHcCCCeeeecccCCcccc
Q psy7691 52 LQHLKGQGFEEPTAIQAQGWPI-ALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 52 ~~~l~~~g~~~~t~~Q~~a~~~-~l~G~di~~~a~tgsGKt~ 92 (165)
+..|.+.|+- ++.+..-+.. +..+.+++++++||+|||.
T Consensus 154 l~~l~~~g~~--~~~~~~~L~~~v~~~~~ili~G~tGsGKTT 193 (340)
T TIGR03819 154 LDELVASGTF--PPGVARLLRAIVAARLAFLISGGTGSGKTT 193 (340)
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence 4445555653 3344333333 3456799999999999987
No 295
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=63.33 E-value=3.6 Score=28.15 Aligned_cols=14 Identities=36% Similarity=0.254 Sum_probs=11.6
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
|+..+.+|||||..
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 56789999999873
No 296
>PF05729 NACHT: NACHT domain
Probab=62.80 E-value=13 Score=26.40 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=12.5
Q ss_pred eeeecccCCccccee
Q psy7691 80 MVGIAQTGSGKTLAV 94 (165)
Q Consensus 80 i~~~a~tgsGKt~~~ 94 (165)
+++.|..|+|||...
T Consensus 3 l~I~G~~G~GKStll 17 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL 17 (166)
T ss_pred EEEECCCCCChHHHH
Confidence 578999999999843
No 297
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=62.75 E-value=6.8 Score=32.31 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=19.5
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.+ +++.++||||||..++
T Consensus 69 v~~~~~G~n~~i~ayG~tgSGKT~Tm~ 95 (325)
T cd01369 69 VDDVLNGYNGTIFAYGQTGSGKTYTME 95 (325)
T ss_pred HHHHHcCccceEEEeCCCCCCceEEec
Confidence 444678876 7899999999998754
No 298
>PRK08181 transposase; Validated
Probab=62.10 E-value=10 Score=30.84 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=16.4
Q ss_pred HHcCCCeeeecccCCcccc
Q psy7691 74 ALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~ 92 (165)
+-.+.+++..+++|+|||-
T Consensus 103 ~~~~~nlll~Gp~GtGKTH 121 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSH 121 (269)
T ss_pred HhcCceEEEEecCCCcHHH
Confidence 4477889999999999995
No 299
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=62.07 E-value=23 Score=29.36 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=17.9
Q ss_pred HHHHHHcC-----CCeeeecccCCccccee
Q psy7691 70 GWPIALSG-----RDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 70 a~~~~l~G-----~di~~~a~tgsGKt~~~ 94 (165)
.++.++.| .=+...+++|+|||...
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 46666665 23558999999999743
No 300
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=61.92 E-value=3.8 Score=33.91 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=12.3
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
+++++|||||||..
T Consensus 7 i~I~GpTasGKS~L 20 (300)
T PRK14729 7 VFIFGPTAVGKSNI 20 (300)
T ss_pred EEEECCCccCHHHH
Confidence 67899999999974
No 301
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=61.38 E-value=7.6 Score=31.99 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=19.3
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.+ +++.++||||||..+.
T Consensus 66 v~~~l~G~n~~i~ayG~tgSGKT~T~~ 92 (321)
T cd01374 66 VRSALEGYNGTIFAYGQTSSGKTFTMS 92 (321)
T ss_pred HHHHHCCCceeEEeecCCCCCCceecc
Confidence 445678865 7789999999997654
No 302
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=60.64 E-value=36 Score=26.58 Aligned_cols=91 Identities=21% Similarity=0.309 Sum_probs=52.8
Q ss_pred cCCHHHHHHHHhhcCcEEe-cCC-CCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHH------HcCCCeeeec
Q psy7691 13 RLSESEVEAFRQKKEITVK-GNN-IPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIA------LSGRDMVGIA 84 (165)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~-~~~-~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~------l~G~di~~~a 84 (165)
.+.++-++.+++++.-... ..+ ...|+.. ++..++.+..+..-...|+.+....... +..-|.++++
T Consensus 20 ~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~-----ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~l~~ef~aAD~vVi~ 94 (202)
T COG1182 20 KLADEFIETYKEKHPNDEVIERDLAAEPIPH-----LDEELLAAWFKPQAGEGTAEEKEALARSDKLLEEFLAADKVVIA 94 (202)
T ss_pred HHHHHHHHHHHHhCCCCeEEEeecccCCCcc-----cCHHHHhcccCCccCCCCHHHHHHHHHHHHHHHHHHhcCeEEEE
Confidence 4566788888877743222 111 2223333 4555555554443333356555433221 2335777666
Q ss_pred ccCCcccceeeecCCCCChhHHHHhhccCCC
Q psy7691 85 QTGSGKTLAVINFDYPNSSEDYIHRIGRTGR 115 (165)
Q Consensus 85 ~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r 115 (165)
. =.+|+.+|.....|+.++.|+|.
T Consensus 95 ~-------PM~Nf~iPa~LK~yiD~i~~aGk 118 (202)
T COG1182 95 A-------PMYNFNIPAQLKAYIDHIAVAGK 118 (202)
T ss_pred e-------cccccCCCHHHHHHHHHHhcCCc
Confidence 2 47899999999999998887765
No 303
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=60.64 E-value=7.6 Score=32.46 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=19.5
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.| +++-+.||||||..+.
T Consensus 74 v~~~~~G~n~~i~ayG~tgSGKTyTl~ 100 (352)
T cd01364 74 LDEVLMGYNCTIFAYGQTGTGKTYTME 100 (352)
T ss_pred HHHHhCCCeEEEEECCCCCCCCcEEec
Confidence 344678876 7788999999998764
No 304
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=60.62 E-value=11 Score=31.06 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=19.9
Q ss_pred HHHHHHcCCC--eeeecccCCcccceee
Q psy7691 70 GWPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 70 a~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
.++.++.|.| +++.++||||||..++
T Consensus 70 ~v~~~~~G~~~~i~~yG~tgSGKT~tl~ 97 (328)
T cd00106 70 LVESVLEGYNGTIFAYGQTGSGKTYTMF 97 (328)
T ss_pred HHHHHhCCCceeEEEecCCCCCCeEEec
Confidence 3455678876 7789999999997654
No 305
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=59.52 E-value=8.3 Score=32.05 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=19.7
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.| +++-++||||||...+
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm~ 99 (334)
T cd01375 73 VDSALDGYNGTIFAYGQTGAGKTFTMT 99 (334)
T ss_pred HHHHhCCCccceeeecCCCCCCeEEcc
Confidence 445678865 8899999999997764
No 306
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=59.16 E-value=20 Score=33.99 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=19.0
Q ss_pred CCeeeecccCCcccceeeecCCCCChhHHHHhhcc
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGR 112 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr 112 (165)
.=++++++||||||.. +|. |+...|+
T Consensus 66 ~vvii~getGsGKTTq-----lP~----~lle~g~ 91 (845)
T COG1643 66 QVVIIVGETGSGKTTQ-----LPQ----FLLEEGL 91 (845)
T ss_pred CEEEEeCCCCCChHHH-----HHH----HHHhhhc
Confidence 4477899999999986 453 5555555
No 307
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=59.11 E-value=12 Score=30.95 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=19.7
Q ss_pred HHHHHHcCCC--eeeecccCCcccceee
Q psy7691 70 GWPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 70 a~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
.++.++.|.+ +++.++||||||....
T Consensus 71 ~v~~~~~G~~~~i~~yG~tgSGKT~tl~ 98 (335)
T smart00129 71 LVDSVLEGYNATIFAYGQTGSGKTYTMS 98 (335)
T ss_pred HHHHHhcCCceeEEEeCCCCCCCceEec
Confidence 3445678876 6789999999997654
No 308
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=58.97 E-value=3.1 Score=36.89 Aligned_cols=72 Identities=17% Similarity=0.294 Sum_probs=0.0
Q ss_pred cCCCeeeecccCCcccceeeecCC--------CCChhHHHHhhccCCCCCCCCceEEEECCCc-HHHHHHHHHHHHhcCC
Q psy7691 76 SGRDMVGIAQTGSGKTLAVINFDY--------PNSSEDYIHRIGRTGRCASSGTAYTFFTPNN-GKQAKELIAVLTEASQ 146 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~~~~~l--------P~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~-~~~~~~i~~~l~~~~~ 146 (165)
.|-++.+++++|+||+..+..+-- |.|. -|++...-. .-+.++.+-+.. +.+...+.++++....
T Consensus 29 ~GYNIfv~G~~GtGr~t~v~~~l~~~a~~~~~P~D~-cYV~NF~~p-----~~P~~l~LpaG~G~~f~~~m~~lie~l~~ 102 (509)
T PF13654_consen 29 PGYNIFVMGPPGTGRRTYVRRFLEERAKKKPTPPDW-CYVNNFDDP-----RKPKALSLPAGQGKKFKKDMEELIEELKE 102 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccc-ccccccccc-----ccccccccccccccccccccccccccccc
Confidence 467899999999999886542110 1000 033322111 122333333333 4556677777777777
Q ss_pred CCChHHH
Q psy7691 147 PIPPQLQ 153 (165)
Q Consensus 147 ~~p~~~~ 153 (165)
.+|..++
T Consensus 103 ~ip~~Fe 109 (509)
T PF13654_consen 103 EIPAAFE 109 (509)
T ss_dssp -------
T ss_pred ccccccc
Confidence 7776554
No 309
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=58.77 E-value=8.5 Score=31.94 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=19.8
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.| +++.+.||||||..+.
T Consensus 66 v~~~~~G~n~~i~ayG~tgSGKT~Tm~ 92 (341)
T cd01372 66 VDGLFEGYNATVLAYGQTGSGKTYTMG 92 (341)
T ss_pred HHHHhCCCccceeeecCCCCCCcEEec
Confidence 344578875 7899999999998765
No 310
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=58.06 E-value=4.4 Score=28.65 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=12.7
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
+|+..+++|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 367899999999974
No 311
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=57.78 E-value=7.1 Score=32.23 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.3
Q ss_pred HHHHHHcCCCeeeecccCCcccce
Q psy7691 70 GWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 70 a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
+.-.++.|..++..+++|.|||..
T Consensus 36 ~l~a~~~~~~vll~G~PG~gKT~l 59 (329)
T COG0714 36 ALLALLAGGHVLLEGPPGVGKTLL 59 (329)
T ss_pred HHHHHHcCCCEEEECCCCccHHHH
Confidence 344568999999999999999985
No 312
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=57.76 E-value=13 Score=34.96 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=41.4
Q ss_pred CchHHHHHHHH----HHcCCC-eeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 63 PTAIQAQGWPI----ALSGRD-MVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 63 ~t~~Q~~a~~~----~l~G~d-i~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
+-.-|..||.. +..|++ ++.+=.||+|||-..+ .+++|+-|.++.. .++|++-. ..+..|-
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi---------aii~rL~r~~~~K----RVLFLaDR-~~Lv~QA 231 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI---------AIIDRLIKSGWVK----RVLFLADR-NALVDQA 231 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH---------HHHHHHHhcchhh----eeeEEech-HHHHHHH
Confidence 44567777664 456643 7777889999998554 2788887765543 36666644 5555555
Q ss_pred HHHH
Q psy7691 138 IAVL 141 (165)
Q Consensus 138 ~~~l 141 (165)
....
T Consensus 232 ~~af 235 (875)
T COG4096 232 YGAF 235 (875)
T ss_pred HHHH
Confidence 5433
No 313
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=57.74 E-value=7 Score=30.60 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=16.1
Q ss_pred HHHHHHH-cCCCeeeecccCCcccce
Q psy7691 69 QGWPIAL-SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 69 ~a~~~~l-~G~di~~~a~tgsGKt~~ 93 (165)
+|+..+. .|.+++..++.|+|||..
T Consensus 13 rAL~iAAaG~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 13 RALEIAAAGGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp HHHHHHHHCC--EEEES-CCCTHHHH
T ss_pred HHHHHHHcCCCCeEEECCCCCCHHHH
Confidence 4444443 456899999999999985
No 314
>KOG0922|consensus
Probab=57.39 E-value=19 Score=33.03 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=23.1
Q ss_pred HcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccC
Q psy7691 75 LSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRT 113 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~ 113 (165)
-...-+++++.||||||.= +| +|+.+.|-+
T Consensus 64 e~nqvlIviGeTGsGKSTQ-----ip----QyL~eaG~~ 93 (674)
T KOG0922|consen 64 EDNQVLIVIGETGSGKSTQ-----IP----QYLAEAGFA 93 (674)
T ss_pred HHCCEEEEEcCCCCCcccc-----Hh----HHHHhcccc
Confidence 3445578999999999974 56 388888875
No 315
>PRK06921 hypothetical protein; Provisional
Probab=56.81 E-value=20 Score=28.89 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=14.7
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.+..++..+++|+|||-
T Consensus 116 ~~~~l~l~G~~G~GKTh 132 (266)
T PRK06921 116 RKNSIALLGQPGSGKTH 132 (266)
T ss_pred CCCeEEEECCCCCcHHH
Confidence 45679999999999995
No 316
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=56.65 E-value=9.7 Score=31.60 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=19.5
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.+ +++.+.||||||..++
T Consensus 74 v~~~~~G~n~~i~ayG~tgSGKTyTm~ 100 (333)
T cd01371 74 VDSVLEGYNGTIFAYGQTGTGKTFTME 100 (333)
T ss_pred HHHHhCCCceeEEecCCCCCCCcEeec
Confidence 445678876 7889999999997654
No 317
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=56.56 E-value=4.7 Score=30.64 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=12.4
Q ss_pred CCeeeecccCCccccee
Q psy7691 78 RDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~ 94 (165)
-++++.+.+|||||.+.
T Consensus 39 ~h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLL 55 (205)
T ss_dssp -SEEEE--TTSSHHHHH
T ss_pred ceEEEEcCCCCCccHHH
Confidence 38999999999999853
No 318
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=56.55 E-value=5.2 Score=33.41 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=14.8
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.+..++++++||||||..
T Consensus 121 ~~g~ili~G~tGSGKTT~ 138 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT 138 (343)
T ss_pred cCcEEEEECCCCCCHHHH
Confidence 345688999999999874
No 319
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=56.53 E-value=3.5 Score=31.56 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=13.2
Q ss_pred CCCeeeecccCCccccee
Q psy7691 77 GRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~ 94 (165)
...|+.+++.|+|||..|
T Consensus 3 ~~~vlL~Gps~SGKTaLf 20 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALF 20 (181)
T ss_dssp --EEEEE-STTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 346889999999999865
No 320
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=56.52 E-value=6.2 Score=24.83 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.6
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|...+..+++|+|||..
T Consensus 22 ~g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTL 39 (62)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 455688999999999874
No 321
>KOG0745|consensus
Probab=56.49 E-value=5.7 Score=34.93 Aligned_cols=19 Identities=42% Similarity=0.590 Sum_probs=16.0
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
+.-.+++..+|||||||+.
T Consensus 224 LeKSNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLL 242 (564)
T ss_pred eecccEEEECCCCCchhHH
Confidence 4556799999999999984
No 322
>KOG0926|consensus
Probab=56.33 E-value=40 Score=32.16 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=27.6
Q ss_pred CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCC
Q psy7691 79 DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129 (165)
Q Consensus 79 di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~ 129 (165)
=+++|+.||||||.- +|. |+...|-+......+.-+.|--|-
T Consensus 273 vvIIcGeTGsGKTTQ-----vPQ----FLYEAGf~s~~~~~~gmIGITqPR 314 (1172)
T KOG0926|consen 273 VVIICGETGSGKTTQ-----VPQ----FLYEAGFASEQSSSPGMIGITQPR 314 (1172)
T ss_pred eEEEecCCCCCcccc-----chH----HHHHcccCCccCCCCCeeeecCch
Confidence 367899999999985 573 888887754443443334444444
No 323
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=56.16 E-value=39 Score=35.05 Aligned_cols=65 Identities=20% Similarity=0.118 Sum_probs=41.2
Q ss_pred CCchHHHHHHHHHHcCCC--eeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGRD--MVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~d--i~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
..++.|..|+..++.+.| +++++..|+|||..+.- ....+..+.. ..|..+..+.|+ -..+..|.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~------~~~~i~~~~~-----~~g~~v~glApT-~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLES------RYKPVLQAFE-----SEQLQVIGLAPT-HEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHH------HHHHHHHHHH-----hcCCeEEEEeCh-HHHHHHHH
Confidence 479999999999887754 56789999999985420 0001212111 235567778888 44444443
No 324
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=56.10 E-value=5.5 Score=30.08 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=14.8
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.+.+++..+++|+|||-.
T Consensus 45 ~~~~~l~l~G~~G~GKThL 63 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHL 63 (178)
T ss_dssp SC--EEEEEESTTSSHHHH
T ss_pred ccCeEEEEEhhHhHHHHHH
Confidence 4567899999999999974
No 325
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=55.93 E-value=11 Score=29.47 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.5
Q ss_pred cCCCeeeecccCCccccee
Q psy7691 76 SGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~ 94 (165)
.|.-+++.+++|+|||...
T Consensus 20 ~gs~~lI~G~pGsGKT~la 38 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFS 38 (237)
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3567889999999999843
No 326
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=55.88 E-value=11 Score=31.03 Aligned_cols=26 Identities=38% Similarity=0.432 Sum_probs=20.1
Q ss_pred HHHHHHcCCC--eeeecccCCcccceee
Q psy7691 70 GWPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 70 a~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
.++.++.|.+ +++.++||||||..++
T Consensus 69 ~v~~~~~G~~~~i~ayG~tgSGKT~tl~ 96 (329)
T cd01366 69 LVQSALDGYNVCIFAYGQTGSGKTYTME 96 (329)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCcEEec
Confidence 3445678876 7789999999998764
No 327
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=55.75 E-value=20 Score=34.77 Aligned_cols=30 Identities=40% Similarity=0.457 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHc--------CCCeeeecccCCcccce
Q psy7691 64 TAIQAQGWPIALS--------GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 64 t~~Q~~a~~~~l~--------G~di~~~a~tgsGKt~~ 93 (165)
+..|..|.+.+.. |--++-.|.||+|||++
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a 447 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA 447 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH
Confidence 4468888887642 44577889999999985
No 328
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=55.67 E-value=13 Score=31.07 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=27.5
Q ss_pred eeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 80 MVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 80 i~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
+++.+..|||||+..++ ...++.. ...+....+++.. ..+...+.+.+..
T Consensus 4 ~~I~G~aGTGKTvla~~---------l~~~l~~----~~~~~~~~~l~~n-~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALN---------LAKELQN----SEEGKKVLYLCGN-HPLRNKLREQLAK 53 (352)
T ss_pred EEEEecCCcCHHHHHHH---------HHHHhhc----cccCCceEEEEec-chHHHHHHHHHhh
Confidence 57899999999985431 3333311 1233445566655 4444444444433
No 329
>KOG0950|consensus
Probab=55.66 E-value=36 Score=32.61 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=25.2
Q ss_pred hhHHHHhhccCCCCCC--CCceEEEECCCcHHH
Q psy7691 103 SEDYIHRIGRTGRCAS--SGTAYTFFTPNNGKQ 133 (165)
Q Consensus 103 ~~~~i~r~gr~~r~~~--~g~~~~~~~p~~~~~ 133 (165)
.-+|.+++||+||+|- .|-+++++.+.+...
T Consensus 583 ~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~ 615 (1008)
T KOG0950|consen 583 RLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKR 615 (1008)
T ss_pred hhhHHhhhhhhhhcccccCcceEEEeeccchhH
Confidence 5579999999999985 577899998886543
No 330
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=55.65 E-value=7.5 Score=34.27 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=18.8
Q ss_pred HHHHH-HcCCCeeeecccCCcccce
Q psy7691 70 GWPIA-LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 70 a~~~~-l~G~di~~~a~tgsGKt~~ 93 (165)
|...+ ..|.+++..+++|||||..
T Consensus 190 AleiAAAGgHnLl~~GpPGtGKTml 214 (490)
T COG0606 190 ALEIAAAGGHNLLLVGPPGTGKTML 214 (490)
T ss_pred HHHHHHhcCCcEEEecCCCCchHHh
Confidence 44433 5668999999999999985
No 331
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=55.60 E-value=25 Score=35.93 Aligned_cols=65 Identities=17% Similarity=0.083 Sum_probs=42.0
Q ss_pred CCchHHHHHHHHHHcCC--CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGR--DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~--di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
.+++.|.+|+..++.+. -+++++..|+|||..+- . +...+..+.. ..+..+..+.|+ -..+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~----~--v~~~~~~l~~-----~~~~~V~glAPT-grAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR----A--VMSAVNTLPE-----SERPRVVGLGPT-HRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH----H--HHHHHHHhhc-----ccCceEEEECCc-HHHHHHHH
Confidence 47899999999999864 47789999999997532 1 1112222211 244568888998 44444443
No 332
>COG4889 Predicted helicase [General function prediction only]
Probab=55.59 E-value=31 Score=33.30 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=34.4
Q ss_pred CCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcC-------CCeeeecccCCcccce
Q psy7691 35 IPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG-------RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 35 ~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G-------~di~~~a~tgsGKt~~ 93 (165)
+.+.-+.|+...- .++..+|.-+.=..|.|.|+.|++.+.+| .=+++ .|+|||..
T Consensus 135 i~es~IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMA---cGTGKTfT 196 (1518)
T COG4889 135 IAESPIDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMA---CGTGKTFT 196 (1518)
T ss_pred HhcCCCChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEe---cCCCccch
Confidence 3333346655433 34444454445567899999999998766 23433 57999974
No 333
>KOG0948|consensus
Probab=55.59 E-value=16 Score=34.39 Aligned_cols=54 Identities=26% Similarity=0.313 Sum_probs=34.5
Q ss_pred HHHHHHcCCCeee------ecccCCcccceeeecCCCCChhHHHHhhccCCCCCC--CCceEEEECCC
Q psy7691 70 GWPIALSGRDMVG------IAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCAS--SGTAYTFFTPN 129 (165)
Q Consensus 70 a~~~~l~G~di~~------~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~--~g~~~~~~~p~ 129 (165)
|+..+..|.+.++ .+.--.|+..-++ +.-.|||..||+||.|. .|.+++++...
T Consensus 478 ATETFsiGLNMPAkTVvFT~~rKfDG~~fRwi------ssGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 478 ATETFSIGLNMPAKTVVFTAVRKFDGKKFRWI------SSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred hhhhhhhccCCcceeEEEeeccccCCcceeee------cccceEEecccccccCCCCCceEEEEecCc
Confidence 4445566766432 2233356665555 23469999999999995 57777777644
No 334
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=54.85 E-value=23 Score=33.67 Aligned_cols=69 Identities=28% Similarity=0.374 Sum_probs=45.9
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc------H
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN------G 131 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~------~ 131 (165)
.|.+ |+++|..+--.+..|. ++-=.||-|||+... ||. |++-+ .|..+-+++..+ .
T Consensus 75 lG~r-~ydVQliGglvLh~G~--IAEMkTGEGKTLvAt---Lpa----yLnAL--------~GkgVhVVTvNdYLA~RDa 136 (925)
T PRK12903 75 LGKR-PYDVQIIGGIILDLGS--VAEMKTGEGKTITSI---APV----YLNAL--------TGKGVIVSTVNEYLAERDA 136 (925)
T ss_pred hCCC-cCchHHHHHHHHhcCC--eeeecCCCCccHHHH---HHH----HHHHh--------cCCceEEEecchhhhhhhH
Confidence 4775 8999988765666773 467789999999777 774 67644 333566666664 3
Q ss_pred HHHHHHHHHHHhc
Q psy7691 132 KQAKELIAVLTEA 144 (165)
Q Consensus 132 ~~~~~i~~~l~~~ 144 (165)
+.+..+.+++.-.
T Consensus 137 e~mg~vy~fLGLs 149 (925)
T PRK12903 137 EEMGKVFNFLGLS 149 (925)
T ss_pred HHHHHHHHHhCCc
Confidence 4455566655544
No 335
>KOG0948|consensus
Probab=54.81 E-value=8.9 Score=35.90 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=27.9
Q ss_pred CchHHHHHHHHHHcCCCeeeecccCCcccc
Q psy7691 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 63 ~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~ 92 (165)
.-|+|..||.++-++..|++.|-|..|||.
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTV 159 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTV 159 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcch
Confidence 346999999999999999999999999997
No 336
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=54.51 E-value=8.1 Score=31.83 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=18.6
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.| +++-++||||||..++
T Consensus 67 v~~~l~G~n~~i~ayG~tgSGKT~Tm~ 93 (335)
T PF00225_consen 67 VDSVLDGYNATIFAYGQTGSGKTYTMF 93 (335)
T ss_dssp HHHHHTT-EEEEEEEESTTSSHHHHHT
T ss_pred HHHhhcCCceEEEeecccccccccccc
Confidence 445688876 7788999999996544
No 337
>KOG0333|consensus
Probab=54.32 E-value=4.1 Score=36.46 Aligned_cols=111 Identities=33% Similarity=0.481 Sum_probs=92.0
Q ss_pred CCCCccccccC-CCcHHHHHHHHhCCCCCCch------HHHH---------------HHHHHHcCCCeeeecccCCcccc
Q psy7691 35 IPCPTQELTEG-CFPNAVLQHLKGQGFEEPTA------IQAQ---------------GWPIALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 35 ~p~~i~~f~~l-~l~~~l~~~l~~~g~~~~t~------~Q~~---------------a~~~~l~G~di~~~a~tgsGKt~ 92 (165)
..+|++.|.+. .-++.+.+.|.++||..-+- -|.+ |++.+.+|.||..++
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVS-------- 587 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVS-------- 587 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccc--------
Confidence 56788888775 78889999999999976432 2322 566667778887777
Q ss_pred eeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHH-hcCCCCChHHH
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLT-EASQPIPPQLQ 153 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~-~~~~~~p~~~~ 153 (165)
+|+|||++.+.++|+||||||||+|+.|.+++|++|.+.+.+.+|.+.+. ......|+.+.
T Consensus 588 lVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela 649 (673)
T KOG0333|consen 588 LVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELA 649 (673)
T ss_pred eeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhc
Confidence 99999999999999999999999999999999999999899999988887 55666777664
No 338
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=54.24 E-value=62 Score=27.22 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=16.2
Q ss_pred CccccccCCCcHHHHHHHHhCCCCC
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFEE 62 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~~ 62 (165)
++......++.+..++.|++.||.+
T Consensus 27 ~~~~l~~~gi~~~~i~kL~~~g~~T 51 (342)
T PLN03186 27 PIEQLQASGIAALDIKKLKDAGIHT 51 (342)
T ss_pred cHHHHHhCCCCHHHHHHHHHcCCCc
Confidence 3445555667777777777777765
No 339
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=54.24 E-value=6.4 Score=28.05 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=16.2
Q ss_pred HHHcCCCeeeecccCCcccce
Q psy7691 73 IALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 73 ~~l~G~di~~~a~tgsGKt~~ 93 (165)
.+.....|+.++..|+||+..
T Consensus 17 ~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 17 LAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHCSSS-EEEECCTTSSHHHH
T ss_pred HhCCCCcEEEEcCCCCCHHHH
Confidence 345567899999999999874
No 340
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=54.22 E-value=7 Score=29.33 Aligned_cols=52 Identities=25% Similarity=0.380 Sum_probs=30.9
Q ss_pred CCCeeeecccCCccccee---eecCCCCChhHHHHhhccCCCCCC-CCceEEEECCC
Q psy7691 77 GRDMVGIAQTGSGKTLAV---INFDYPNSSEDYIHRIGRTGRCAS-SGTAYTFFTPN 129 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~---~~~~lP~~~~~~i~r~gr~~r~~~-~g~~~~~~~p~ 129 (165)
++-++.++|.|+||+... +.. .|......+....|..|.|. .|.-..+++..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~-~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ 57 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE-IPDAFERVVSHTTRPPRPGEVNGVDYHFVSRE 57 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc-CCcceEeeeeecCCCCCCCCcCCceEEECCHH
Confidence 456889999999997621 111 12223334445567777664 46667776643
No 341
>PRK06835 DNA replication protein DnaC; Validated
Probab=54.08 E-value=18 Score=30.23 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.9
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.+..++..+++|+|||-
T Consensus 182 ~~~~Lll~G~~GtGKTh 198 (329)
T PRK06835 182 NNENLLFYGNTGTGKTF 198 (329)
T ss_pred cCCcEEEECCCCCcHHH
Confidence 45789999999999996
No 342
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=53.91 E-value=13 Score=29.46 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.8
Q ss_pred cCCCeeeecccCCccccee
Q psy7691 76 SGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~ 94 (165)
+|.-+++.+++|+|||...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~ 40 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFA 40 (260)
T ss_pred CCcEEEEEcCCCCcHHHHH
Confidence 4567899999999999843
No 343
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=53.69 E-value=6.6 Score=29.49 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.6
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
+|.-++.+++.|+|||..
T Consensus 1 ~g~~i~l~G~sGsGKsTl 18 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSL 18 (186)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356688899999999873
No 344
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=53.60 E-value=8.8 Score=30.17 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=12.9
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
-++..++.|+|||..
T Consensus 45 ~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 45 FILITGEVGAGKTTL 59 (269)
T ss_pred EEEEEcCCCCCHHHH
Confidence 477899999999984
No 345
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=53.29 E-value=1.2 Score=35.36 Aligned_cols=20 Identities=35% Similarity=0.310 Sum_probs=15.7
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+..|.-++..|++|+|||..
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l 46 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTF 46 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHH
Confidence 34556678899999999974
No 346
>PRK13531 regulatory ATPase RavA; Provisional
Probab=53.23 E-value=19 Score=31.94 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 50 AVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 50 ~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.+...|.+.=+.. -.+-..+.-.++.|.+++..+++|+|||..
T Consensus 13 ~l~~~l~~~i~gr-e~vI~lll~aalag~hVLL~GpPGTGKT~L 55 (498)
T PRK13531 13 RLSSALEKGLYER-SHAIRLCLLAALSGESVFLLGPPGIAKSLI 55 (498)
T ss_pred HHHHHHhhhccCc-HHHHHHHHHHHccCCCEEEECCCChhHHHH
Confidence 3444444433332 223334445678899999999999999974
No 347
>PRK00131 aroK shikimate kinase; Reviewed
Probab=53.01 E-value=6.2 Score=28.62 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.1
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.+..++.++++|||||..
T Consensus 3 ~~~~i~l~G~~GsGKstl 20 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTI 20 (175)
T ss_pred CCCeEEEEcCCCCCHHHH
Confidence 466789999999999873
No 348
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=52.98 E-value=4 Score=34.96 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=27.5
Q ss_pred cHHHHHHHHhC-CCCCCchHHHHHHHHHHcCCCeeeecccCCccccee
Q psy7691 48 PNAVLQHLKGQ-GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 48 ~~~l~~~l~~~-g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~ 94 (165)
..++.+.++.. +-..+-.+-...+|.-...++++++++||+|||..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 12 VRKLARKLRKKDGKASPITIAGLPFPKDAEEAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred HHHHHHHHHHhcCCCCCeeECCEeCCcchhhccEEEEcCCCCCHHHHH
Confidence 45666666642 111111111123444555679999999999999853
No 349
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=52.93 E-value=14 Score=29.22 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=25.1
Q ss_pred CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc--HHHHHHHHHHH
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN--GKQAKELIAVL 141 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~--~~~~~~i~~~l 141 (165)
..++.....|.|||...+- ++..+...++.... ..+++++|.. ......+.+++
T Consensus 26 ~g~lL~de~GlGKT~~~i~---------~~~~l~~~~~~~~~-~~~LIv~P~~l~~~W~~E~~~~~ 81 (299)
T PF00176_consen 26 RGGLLADEMGLGKTITAIA---------LISYLKNEFPQRGE-KKTLIVVPSSLLSQWKEEIEKWF 81 (299)
T ss_dssp -EEEE---TTSSHHHHHHH---------HHHHHHHCCTTSS--S-EEEEE-TTTHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCchhhhhh---------hhhhhhhccccccc-cceeEeeccchhhhhhhhhcccc
Confidence 4577788999999987651 33333222221111 1377778773 23344555544
No 350
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=52.74 E-value=50 Score=32.36 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=56.3
Q ss_pred CcHHHHHHHHh-CCCCCCchHHHHHHHHHHc----C--CCeeeecccCCcccceeeecCCCCChhHHHHhhccC-CCCCC
Q psy7691 47 FPNAVLQHLKG-QGFEEPTAIQAQGWPIALS----G--RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRT-GRCAS 118 (165)
Q Consensus 47 l~~~l~~~l~~-~g~~~~t~~Q~~a~~~~l~----G--~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~-~r~~~ 118 (165)
.+.+....+.. ..|. -|+-|..||..+.+ + +|=++|+--|.|||.-.+ |+ -.+-.
T Consensus 579 ~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAm----------------RAAFkAV~ 641 (1139)
T COG1197 579 PDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAM----------------RAAFKAVM 641 (1139)
T ss_pred CChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHH----------------HHHHHHhc
Confidence 44555555554 6887 49999999998743 2 788999999999998322 11 12224
Q ss_pred CCceEEEECCCcHHHHHHHHHHHHhcCCCCC
Q psy7691 119 SGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149 (165)
Q Consensus 119 ~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p 149 (165)
.|..+.++.|| --++.|=.+.+.+-...+|
T Consensus 642 ~GKQVAvLVPT-TlLA~QHy~tFkeRF~~fP 671 (1139)
T COG1197 642 DGKQVAVLVPT-TLLAQQHYETFKERFAGFP 671 (1139)
T ss_pred CCCeEEEEccc-HHhHHHHHHHHHHHhcCCC
Confidence 56788888888 5556665555555444444
No 351
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=52.69 E-value=14 Score=32.01 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=13.8
Q ss_pred CCChhHHHHhhccCCCC
Q psy7691 100 PNSSEDYIHRIGRTGRC 116 (165)
Q Consensus 100 P~~~~~~i~r~gr~~r~ 116 (165)
..+...|+||+||.-|.
T Consensus 360 t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 360 TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCcHHHHHHHhhhhccC
Confidence 35577899999999883
No 352
>PTZ00035 Rad51 protein; Provisional
Probab=52.59 E-value=47 Score=27.79 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=16.8
Q ss_pred HHHHHHcC-----CCeeeecccCCccccee
Q psy7691 70 GWPIALSG-----RDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 70 a~~~~l~G-----~di~~~a~tgsGKt~~~ 94 (165)
.++.++.| .=+...++.|+|||...
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~ 135 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLC 135 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHH
Confidence 34555544 23558999999999743
No 353
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=52.56 E-value=3.5 Score=35.06 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=15.6
Q ss_pred HHHHcCCCeeeecccCCcccce
Q psy7691 72 PIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 72 ~~~l~G~di~~~a~tgsGKt~~ 93 (165)
|.-...+++++++.||||||.+
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~~ 31 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQA 31 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHHH
T ss_pred ccchhhCcEEEECCCCCCHHHH
Confidence 3445667999999999999984
No 354
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=52.47 E-value=30 Score=35.86 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=43.3
Q ss_pred CCchHHHHHHHHHHcCC--CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGR--DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~--di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
.+++-|..|+..++... -.++++..|+|||..+- -+-.+.+ ..|..+.+++|+ ...+..+.+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~----------~l~~~~~-----~~G~~V~~lAPT-grAA~~L~e 492 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ----------LLLHLAS-----EQGYEIQIITAG-SLSAQELRQ 492 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH----------HHHHHHH-----hcCCeEEEEeCC-HHHHHHHHH
Confidence 36788999999888764 46689999999997533 2222222 245678889999 445555555
Q ss_pred HH
Q psy7691 140 VL 141 (165)
Q Consensus 140 ~l 141 (165)
..
T Consensus 493 ~~ 494 (1960)
T TIGR02760 493 KI 494 (1960)
T ss_pred Hh
Confidence 43
No 355
>KOG0330|consensus
Probab=52.46 E-value=20 Score=31.05 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=33.1
Q ss_pred eecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCC
Q psy7691 95 INFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 95 ~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
.-|-|| +++++--. .+....++++|+ |+++.||....+..++.+
T Consensus 113 ~afaLP-----Il~~LL~~----p~~~~~lVLtPt-RELA~QI~e~fe~Lg~~i 156 (476)
T KOG0330|consen 113 GAFALP-----ILQRLLQE----PKLFFALVLTPT-RELAQQIAEQFEALGSGI 156 (476)
T ss_pred hhhHHH-----HHHHHHcC----CCCceEEEecCc-HHHHHHHHHHHHHhcccc
Confidence 457777 77776432 334678889998 999999999999887665
No 356
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=52.34 E-value=6.4 Score=28.76 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=10.9
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
+..+++.++.|+|||..
T Consensus 24 ~~~~ll~G~~G~GKT~l 40 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSL 40 (185)
T ss_dssp ---EEE-B-TTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46799999999999974
No 357
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=52.12 E-value=14 Score=30.31 Aligned_cols=18 Identities=28% Similarity=0.078 Sum_probs=13.7
Q ss_pred CCeeeecccCCcccceee
Q psy7691 78 RDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~ 95 (165)
.=+.+.+++|+|||....
T Consensus 103 ~vtei~G~~GsGKT~l~~ 120 (317)
T PRK04301 103 SITEFYGEFGSGKTQICH 120 (317)
T ss_pred cEEEEECCCCCCHhHHHH
Confidence 345689999999998443
No 358
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=51.64 E-value=46 Score=31.53 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=26.8
Q ss_pred ceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 92 ~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
++|+--..|.+.=-=.|=-||+||.|..|.+-.+++-.+
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 466655555432223334499999999999998888775
No 359
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=51.32 E-value=13 Score=31.56 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=14.0
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
.++++-++||+|||..
T Consensus 43 ~n~~iyG~~GTGKT~~ 58 (366)
T COG1474 43 SNIIIYGPTGTGKTAT 58 (366)
T ss_pred ccEEEECCCCCCHhHH
Confidence 4699999999999984
No 360
>PLN02165 adenylate isopentenyltransferase
Probab=50.90 E-value=7.7 Score=32.62 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=14.7
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-++.+++||||||..
T Consensus 42 ~g~iivIiGPTGSGKStL 59 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRL 59 (334)
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 455688999999999864
No 361
>PHA00729 NTP-binding motif containing protein
Probab=50.77 E-value=8.6 Score=30.52 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=12.7
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
+++..+++|+|||.
T Consensus 19 nIlItG~pGvGKT~ 32 (226)
T PHA00729 19 SAVIFGKQGSGKTT 32 (226)
T ss_pred EEEEECCCCCCHHH
Confidence 68899999999995
No 362
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=50.56 E-value=30 Score=32.99 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=42.5
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.|.. |+++|..+--.+..|. ++.=.||+|||+... +|. |+.-. .|..+-+++|+ .-||.+=
T Consensus 79 lGm~-~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~---l~a----~l~al--------~G~~VhvvT~n-dyLA~RD 139 (913)
T PRK13103 79 MGMR-HFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGT---LAV----YLNAL--------SGKGVHVVTVN-DYLARRD 139 (913)
T ss_pred hCCC-cchhHHHhhhHhccCc--cccccCCCCChHHHH---HHH----HHHHH--------cCCCEEEEeCC-HHHHHHH
Confidence 4764 7999987654555553 457789999999766 662 44432 45578888999 4444443
Q ss_pred HHHHH
Q psy7691 138 IAVLT 142 (165)
Q Consensus 138 ~~~l~ 142 (165)
.+.+.
T Consensus 140 ~e~m~ 144 (913)
T PRK13103 140 ANWMR 144 (913)
T ss_pred HHHHH
Confidence 33333
No 363
>PHA02244 ATPase-like protein
Probab=50.55 E-value=15 Score=31.42 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=17.8
Q ss_pred HHHcCCCeeeecccCCcccce
Q psy7691 73 IALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 73 ~~l~G~di~~~a~tgsGKt~~ 93 (165)
.+..+.+++..+++|+|||..
T Consensus 115 ~l~~~~PVLL~GppGtGKTtL 135 (383)
T PHA02244 115 IVNANIPVFLKGGAGSGKNHI 135 (383)
T ss_pred HHhcCCCEEEECCCCCCHHHH
Confidence 456788999999999999963
No 364
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=50.50 E-value=21 Score=34.79 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=33.5
Q ss_pred CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc---HHHHHHHHHHHHh
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN---GKQAKELIAVLTE 143 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~---~~~~~~i~~~l~~ 143 (165)
..+++.|..|||||...+ ..|+..+ ..|.....++.++-|+ .++-.+|.+.+..
T Consensus 11 ~~~~~~a~agsgkt~~l~--------~~~~~~~----~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L~~ 67 (1141)
T TIGR02784 11 TSAWVSANAGSGKTHVLT--------QRVIRLL----LNGVPPSKILCLTYTKAAAAEMQNRVFDRLGE 67 (1141)
T ss_pred CCEEEEEECCCCHHHHHH--------HHHHHHH----HcCCCCCeEEEEecCHHHHHHHHHHHHHHHHH
Confidence 568899999999997433 1133333 2233445788888885 3455566666643
No 365
>PRK07261 topology modulation protein; Provisional
Probab=50.41 E-value=7.9 Score=28.86 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=12.0
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
+++++++|||||..
T Consensus 3 i~i~G~~GsGKSTl 16 (171)
T PRK07261 3 IAIIGYSGSGKSTL 16 (171)
T ss_pred EEEEcCCCCCHHHH
Confidence 67899999999873
No 366
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=50.34 E-value=7.8 Score=31.48 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=14.8
Q ss_pred CCCeeeecccCCcccceee
Q psy7691 77 GRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~~ 95 (165)
+..+..++++|+|||....
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457789999999998544
No 367
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=50.26 E-value=22 Score=29.51 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=18.2
Q ss_pred HHHHcCCCeeeecccCCccccee
Q psy7691 72 PIALSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 72 ~~~l~G~di~~~a~tgsGKt~~~ 94 (165)
..+.....|+..+.+|+||+...
T Consensus 17 ~~a~~~~pVLI~GE~GtGK~~lA 39 (329)
T TIGR02974 17 RLAPLDRPVLIIGERGTGKELIA 39 (329)
T ss_pred HHhCCCCCEEEECCCCChHHHHH
Confidence 34456678999999999999853
No 368
>PRK00300 gmk guanylate kinase; Provisional
Probab=50.10 E-value=8.4 Score=29.09 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.6
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.|.-++.++++|||||.
T Consensus 4 ~g~~i~i~G~sGsGKst 20 (205)
T PRK00300 4 RGLLIVLSGPSGAGKST 20 (205)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678899999999986
No 369
>KOG0242|consensus
Probab=50.04 E-value=14 Score=33.98 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=19.5
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
++.++.|.+ |++-++||||||...
T Consensus 79 v~~~l~G~N~TVFAYG~TgSGKTyTM 104 (675)
T KOG0242|consen 79 LLSVLEGFNATVFAYGQTGSGKTYTM 104 (675)
T ss_pred HHHHhcCcccceeeecCCCCCCceEE
Confidence 445688865 899999999999854
No 370
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=49.72 E-value=8.3 Score=30.92 Aligned_cols=16 Identities=50% Similarity=0.669 Sum_probs=13.6
Q ss_pred CeeeecccCCccccee
Q psy7691 79 DMVGIAQTGSGKTLAV 94 (165)
Q Consensus 79 di~~~a~tgsGKt~~~ 94 (165)
.++++|++|||||..+
T Consensus 15 r~viIG~sGSGKT~li 30 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLI 30 (241)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999843
No 371
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=49.44 E-value=38 Score=29.35 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=35.3
Q ss_pred CCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc--HHHHHHHHHHHHhcCCCC
Q psy7691 77 GRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN--GKQAKELIAVLTEASQPI 148 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~--~~~~~~i~~~l~~~~~~~ 148 (165)
++-+.-++|||.|||....- .-.|..+ ..++ ..+-|++-.+ -....|+..+.+..+.|+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAK---------LAar~~~--~~~~--~kVaiITtDtYRIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAK---------LAARYVM--LKKK--KKVAIITTDTYRIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHH---------HHHHHHh--hccC--cceEEEEeccchhhHHHHHHHHHHHhCCce
Confidence 66788899999999975321 2222221 1112 2333444332 356788888888888876
No 372
>PRK08118 topology modulation protein; Reviewed
Probab=49.01 E-value=8.6 Score=28.61 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=12.7
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
-|+++++.|||||..
T Consensus 3 rI~I~G~~GsGKSTl 17 (167)
T PRK08118 3 KIILIGSGGSGKSTL 17 (167)
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999873
No 373
>PRK06547 hypothetical protein; Provisional
Probab=48.88 E-value=15 Score=27.66 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=10.3
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
+.+.++.|||||.
T Consensus 18 i~i~G~~GsGKTt 30 (172)
T PRK06547 18 VLIDGRSGSGKTT 30 (172)
T ss_pred EEEECCCCCCHHH
Confidence 4455899999987
No 374
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=48.86 E-value=8.6 Score=27.57 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=11.2
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
++.++++|+|||.
T Consensus 2 i~i~GpsGsGKst 14 (137)
T cd00071 2 IVLSGPSGVGKST 14 (137)
T ss_pred EEEECCCCCCHHH
Confidence 4678999999987
No 375
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=48.76 E-value=9.4 Score=29.16 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=14.9
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.+..++..+++|+|||..
T Consensus 37 ~~~~lll~G~~G~GKT~l 54 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHL 54 (226)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 346789999999999863
No 376
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=48.66 E-value=8.4 Score=31.90 Aligned_cols=15 Identities=40% Similarity=0.379 Sum_probs=12.6
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
=++++++||||||..
T Consensus 6 ~i~i~GptgsGKt~l 20 (307)
T PRK00091 6 VIVIVGPTASGKTAL 20 (307)
T ss_pred EEEEECCCCcCHHHH
Confidence 367899999999873
No 377
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=48.63 E-value=49 Score=23.12 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=48.5
Q ss_pred HHHHHHHhhcCcEEecCCCCCCc-cccccCCCcHHHHHHHHhCCCCCCc----------hHHHHHHHHHH------cCCC
Q psy7691 17 SEVEAFRQKKEITVKGNNIPCPT-QELTEGCFPNAVLQHLKGQGFEEPT----------AIQAQGWPIAL------SGRD 79 (165)
Q Consensus 17 ~~~~~~~~~~~i~~~~~~~p~~i-~~f~~l~l~~~l~~~l~~~g~~~~t----------~~Q~~a~~~~l------~G~d 79 (165)
+.++.|-++.+.......+|... ..+. -.+|++|+...++.||...- ..| ..+...+ +..+
T Consensus 2 e~~e~fle~fg~~~~~~~vp~~~I~kyk-~~lP~~Ll~~W~~~G~g~~~dG~f~~vnP~dy~-~vl~~~~~~~~~~~~~~ 79 (109)
T PF08887_consen 2 EDFEFFLEKFGPPIDRQEVPEESIEKYK-GKLPDELLEYWKEYGFGGYGDGLFWLVNPDDYE-DVLDEWLGGTPLFDPDN 79 (109)
T ss_pred chHHHHHHHcCCCcCCCcCCHHHHHHhc-CCCcHHHHHHHHHcCCchhcCcEEEEECHHHHH-HHHHHHhcCCccccCce
Confidence 45667777777777777766553 2222 36999999999999996521 222 2233333 3445
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
..+++.|+.|.-..
T Consensus 80 ~~~ia~tAFGdl~~ 93 (109)
T PF08887_consen 80 YIPIARTAFGDLYV 93 (109)
T ss_pred EEEEEEcccccEEE
Confidence 77788888887553
No 378
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=48.27 E-value=12 Score=30.85 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=14.6
Q ss_pred CCeeeecccCCccccee
Q psy7691 78 RDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~ 94 (165)
..+++.+++|+|||..+
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57899999999999754
No 379
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=47.94 E-value=9.4 Score=30.36 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.1
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
+.+++..+++|+|||..
T Consensus 42 ~~~vll~GppGtGKTtl 58 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTV 58 (261)
T ss_pred cceEEEEcCCCCCHHHH
Confidence 35688999999999973
No 380
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=47.90 E-value=9 Score=31.87 Aligned_cols=14 Identities=43% Similarity=0.382 Sum_probs=12.1
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
++.++||+||||..
T Consensus 6 i~I~GPTAsGKT~l 19 (308)
T COG0324 6 IVIAGPTASGKTAL 19 (308)
T ss_pred EEEECCCCcCHHHH
Confidence 57899999999974
No 381
>KOG1806|consensus
Probab=47.87 E-value=31 Score=33.53 Aligned_cols=83 Identities=13% Similarity=0.088 Sum_probs=50.4
Q ss_pred CCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 60 FEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 60 ~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
+-..|+-|.++|-..+.--++++++|+|+|||.-.+. .+...-|+. .....++++.+ ...+.++.+
T Consensus 736 ~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-----il~~lyhn~--------p~qrTlivths-nqaln~lfe 801 (1320)
T KOG1806|consen 736 QVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-----ILSVLYHNS--------PNQRTLIVTHS-NQALNQLFE 801 (1320)
T ss_pred hhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-----hhhhhhhcC--------CCcceEEEEec-ccchhHHHH
Confidence 3345778888765555556899999999999975431 111122222 22345566655 566677777
Q ss_pred HHHhcCCCCChHHHHHhh
Q psy7691 140 VLTEASQPIPPQLQDLAN 157 (165)
Q Consensus 140 ~l~~~~~~~p~~~~~~~~ 157 (165)
.+.+.....- ++..+..
T Consensus 802 Ki~~~d~d~r-hLlrlg~ 818 (1320)
T KOG1806|consen 802 KIMALDVDER-HLLRLGH 818 (1320)
T ss_pred HHHhcccchh-hHHHhcc
Confidence 7777666555 5555543
No 382
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=47.83 E-value=19 Score=35.19 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=38.8
Q ss_pred HHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc---HHHHHHHHHHHHhc
Q psy7691 74 ALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN---GKQAKELIAVLTEA 144 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~---~~~~~~i~~~l~~~ 144 (165)
.-.+.++++.|..|||||.... .-|++-+-..| +-.-..++++|-|+ .++-.+|.+.+...
T Consensus 13 ~~~~~~~lveASAGSGKT~vL~--------~r~lrlLl~~~--~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~~ 76 (1139)
T COG1074 13 SPPGQSVLVEASAGTGKTFVLA--------ERVLRLLLEGG--PLDVDEILVVTFTKAAAAEMKERIRDRLKEA 76 (1139)
T ss_pred cCCCCcEEEEEcCCCCchhHHH--------HHHHHHHhhcC--CCChhHeeeeeccHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999997432 22565554432 33344688888775 45555666666553
No 383
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=47.80 E-value=9.1 Score=31.12 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.6
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
+.+++..+++|+|||..
T Consensus 58 ~~~vll~G~pGTGKT~l 74 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTV 74 (284)
T ss_pred CceEEEEcCCCCCHHHH
Confidence 55789999999999973
No 384
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=47.79 E-value=9.1 Score=28.20 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=13.0
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
|.=++..+++|+|||.
T Consensus 1 g~ii~l~G~~GsGKsT 16 (180)
T TIGR03263 1 GLLIVISGPSGVGKST 16 (180)
T ss_pred CcEEEEECCCCCCHHH
Confidence 3446789999999987
No 385
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=47.72 E-value=9.6 Score=26.80 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=12.6
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
|+..++.+|+|||..
T Consensus 1 ~i~l~G~~g~GKTtL 15 (170)
T cd01876 1 EIAFAGRSNVGKSSL 15 (170)
T ss_pred CEEEEcCCCCCHHHH
Confidence 578899999999863
No 386
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=47.70 E-value=19 Score=31.62 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCCeeeecccCCcccce
Q psy7691 68 AQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 68 ~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
...+..+..+.+++..+++|+|||..
T Consensus 185 e~l~~~L~~~~~iil~GppGtGKT~l 210 (459)
T PRK11331 185 ETILKRLTIKKNIILQGPPGVGKTFV 210 (459)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHH
Confidence 34455566889999999999999963
No 387
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=47.67 E-value=1e+02 Score=25.51 Aligned_cols=74 Identities=23% Similarity=0.301 Sum_probs=55.9
Q ss_pred CCHHHHHHHHhhcCcEEe-cCCCCC-CccccccCCCcHHHHHHHHhCCCCC-----C--chHHHHHHHHHHcCCCeeeec
Q psy7691 14 LSESEVEAFRQKKEITVK-GNNIPC-PTQELTEGCFPNAVLQHLKGQGFEE-----P--TAIQAQGWPIALSGRDMVGIA 84 (165)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~-~~~~p~-~i~~f~~l~l~~~l~~~l~~~g~~~-----~--t~~Q~~a~~~~l~G~di~~~a 84 (165)
+..-.++.++++--+.+. ..++|+ -+..|+..++++++.+.+++.|... | |.+|.++-...-.|.+++.++
T Consensus 42 HN~~Vv~~L~~~g~~fve~l~e~p~~~~VIfsAHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~G~~iIliG 121 (294)
T COG0761 42 HNRYVVDRLREKGAIFVEELDEVPDGATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREGYEIILIG 121 (294)
T ss_pred cCHHHHHHHHHcCCEeccccccCCCCCEEEEECCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhCCCEEEEEc
Confidence 445578888876666664 345553 4889999999999999999998743 2 668888877788888888777
Q ss_pred ccC
Q psy7691 85 QTG 87 (165)
Q Consensus 85 ~tg 87 (165)
--|
T Consensus 122 ~~g 124 (294)
T COG0761 122 HKG 124 (294)
T ss_pred cCC
Confidence 654
No 388
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.33 E-value=25 Score=30.71 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=14.6
Q ss_pred CCeeeecccCCcccceee
Q psy7691 78 RDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~ 95 (165)
..+..++++|+|||....
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 457789999999998554
No 389
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.24 E-value=9.7 Score=32.55 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=14.2
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
++++.++|||.|||.
T Consensus 51 KNILMIGpTGVGKTE 65 (444)
T COG1220 51 KNILMIGPTGVGKTE 65 (444)
T ss_pred cceEEECCCCCcHHH
Confidence 689999999999998
No 390
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=47.21 E-value=8.8 Score=32.97 Aligned_cols=19 Identities=32% Similarity=0.643 Sum_probs=16.8
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
+.|+-++..+|+|+|||..
T Consensus 63 ~aGrgiLi~GppgTGKTAl 81 (450)
T COG1224 63 MAGRGILIVGPPGTGKTAL 81 (450)
T ss_pred ccccEEEEECCCCCcHHHH
Confidence 5778899999999999974
No 391
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=47.09 E-value=32 Score=28.48 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=17.9
Q ss_pred HHHcCCCeeeecccCCccccee
Q psy7691 73 IALSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 73 ~~l~G~di~~~a~tgsGKt~~~ 94 (165)
.+..+..|+.++.+|+||+...
T Consensus 25 ~a~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 25 LAPLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred HhCCCCCEEEECCCCCcHHHHH
Confidence 3456678999999999998753
No 392
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=47.01 E-value=6.5 Score=35.35 Aligned_cols=44 Identities=27% Similarity=0.478 Sum_probs=25.4
Q ss_pred cHHHHHHHHhCCCCCCchHHHHHHHH---HHcCCCeeeecccCCcccce
Q psy7691 48 PNAVLQHLKGQGFEEPTAIQAQGWPI---ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 48 ~~~l~~~l~~~g~~~~t~~Q~~a~~~---~l~G~di~~~a~tgsGKt~~ 93 (165)
+.++.+.+++.+= .+++.--.+|. -....++++.|+||||||..
T Consensus 146 ~~~l~~~l~~~~~--~~~~~igg~pl~~~~~e~~h~li~G~tGsGKs~~ 192 (566)
T TIGR02759 146 PKELIKKLKKSRR--ASDIKIGGLPLIKFGSETQHILIHGTTGSGKSVA 192 (566)
T ss_pred HHHHHHHHHhcCC--CCceeeCCccCCCCcccccceEEEcCCCCCHHHH
Confidence 4455666665541 12221122232 33456899999999999963
No 393
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=46.96 E-value=9.6 Score=26.84 Aligned_cols=14 Identities=43% Similarity=0.558 Sum_probs=11.7
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
++..+++|+|||..
T Consensus 2 ~~i~G~~G~GKT~l 15 (165)
T cd01120 2 ILVFGPTGSGKTTL 15 (165)
T ss_pred eeEeCCCCCCHHHH
Confidence 46789999999983
No 394
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=46.53 E-value=24 Score=30.17 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=17.3
Q ss_pred HHHHHcC----CCeeeecccCCcccceee
Q psy7691 71 WPIALSG----RDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G----~di~~~a~tgsGKt~~~~ 95 (165)
++.++.| .=+++.|++|+|||...+
T Consensus 185 LD~~~~G~~~G~l~vi~g~pg~GKT~~~l 213 (434)
T TIGR00665 185 LDKLTSGLQPSDLIILAARPSMGKTAFAL 213 (434)
T ss_pred hHhhcCCCCCCeEEEEEeCCCCChHHHHH
Confidence 3444444 346789999999998544
No 395
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=46.49 E-value=30 Score=27.60 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=14.9
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-+++.+++|+|||..
T Consensus 35 ~gs~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLM 52 (259)
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456688999999999984
No 396
>KOG0924|consensus
Probab=46.36 E-value=60 Score=30.51 Aligned_cols=48 Identities=25% Similarity=0.260 Sum_probs=29.0
Q ss_pred CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHH
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAV 140 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~ 140 (165)
.-|++++.||||||.- +| +|++.-|-+ .+| ++-.+.+.|-.|-.+.+-
T Consensus 372 ~vvvivgETGSGKTTQ-----l~----QyL~edGY~----~~G--mIGcTQPRRvAAiSVAkr 419 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQ-----LA----QYLYEDGYA----DNG--MIGCTQPRRVAAISVAKR 419 (1042)
T ss_pred cEEEEEecCCCCchhh-----hH----HHHHhcccc----cCC--eeeecCchHHHHHHHHHH
Confidence 4477899999999985 34 388877653 333 333444445444444433
No 397
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=46.33 E-value=8.6 Score=32.21 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.2
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
.+++..+++|+|||..
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5689999999999984
No 398
>CHL00181 cbbX CbbX; Provisional
Probab=46.07 E-value=10 Score=30.96 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=14.9
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.+++..+++|+|||..
T Consensus 58 ~~~~ill~G~pGtGKT~l 75 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTV 75 (287)
T ss_pred CCceEEEECCCCCCHHHH
Confidence 356788999999999873
No 399
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=46.00 E-value=8.7 Score=33.00 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=14.4
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
+.|+-++..+++|+|||..
T Consensus 48 ~aGr~iLiaGppGtGKTAl 66 (398)
T PF06068_consen 48 IAGRAILIAGPPGTGKTAL 66 (398)
T ss_dssp -TT-EEEEEE-TTSSHHHH
T ss_pred ccCcEEEEeCCCCCCchHH
Confidence 3678999999999999974
No 400
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=45.87 E-value=9.5 Score=29.42 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.5
Q ss_pred cCCCeeeecccCCccccee
Q psy7691 76 SGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~ 94 (165)
.|.-+++.+++|+|||...
T Consensus 18 ~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp TTSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHH
Confidence 3467889999999999843
No 401
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=45.85 E-value=6.7 Score=34.53 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 67 QAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 67 Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
+..+++.-+..++-++.+.||+|||..
T Consensus 9 ~~v~l~~~~~NRHGLIaGATGTGKTvT 35 (502)
T PF05872_consen 9 APVYLPLKMANRHGLIAGATGTGKTVT 35 (502)
T ss_pred CceecChhhccccceeeccCCCCceeh
Confidence 345667778889999999999999974
No 402
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=45.85 E-value=9.3 Score=27.75 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=10.8
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
++.++++|+|||.
T Consensus 1 i~l~G~~GsGKST 13 (163)
T TIGR01313 1 FVLMGVAGSGKST 13 (163)
T ss_pred CEEECCCCCCHHH
Confidence 3568999999986
No 403
>KOG1805|consensus
Probab=45.79 E-value=43 Score=32.28 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCC-eeeecccCCcccceee
Q psy7691 45 GCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRD-MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 45 l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~d-i~~~a~tgsGKt~~~~ 95 (165)
..+.+.+.+. -+.+....|++|+-.++...| .++.+.+|+|||..++
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~ 703 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS 703 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH
Confidence 4555665553 123456689999999999988 4578999999998543
No 404
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=45.32 E-value=9.6 Score=32.71 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCccccccCCCcHHHHHHHHhC---CCCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 37 CPTQELTEGCFPNAVLQHLKGQ---GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~~~l~~~---g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.|-..|++.+-.+...+.+.+. -+..|...+... +...+.++..+++|+|||..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHH
Confidence 4556788886666666665542 122221111111 12346789999999999984
No 405
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.70 E-value=11 Score=32.15 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=16.0
Q ss_pred cCCCeeeecccCCcccceee
Q psy7691 76 SGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~~ 95 (165)
+|..++.+++||+|||....
T Consensus 136 ~g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678899999999998543
No 406
>KOG0245|consensus
Probab=44.52 E-value=95 Score=30.29 Aligned_cols=70 Identities=23% Similarity=0.357 Sum_probs=43.7
Q ss_pred HHHHHHcCCC--eeeecccCCcccceeeecC-------CCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHH
Q psy7691 70 GWPIALSGRD--MVGIAQTGSGKTLAVINFD-------YPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAV 140 (165)
Q Consensus 70 a~~~~l~G~d--i~~~a~tgsGKt~~~~~~~-------lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~ 140 (165)
-+..+..|-+ +++-++|||||+....=+. +|.-+++.-.|+.+. ...+..+.+-..--+=-..+|.++
T Consensus 79 mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~n---q~~~~sy~VevSymEIYcErVrDL 155 (1221)
T KOG0245|consen 79 MLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADN---QSQQMSYSVEVSYMEIYCERVRDL 155 (1221)
T ss_pred HHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhc---ccccceEEEEEeehhHHHHHHHHH
Confidence 3445667765 7789999999987653222 566688888888553 233445554444433345566666
Q ss_pred HH
Q psy7691 141 LT 142 (165)
Q Consensus 141 l~ 142 (165)
|.
T Consensus 156 L~ 157 (1221)
T KOG0245|consen 156 LN 157 (1221)
T ss_pred hh
Confidence 66
No 407
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=44.26 E-value=9.6 Score=28.48 Aligned_cols=17 Identities=35% Similarity=0.319 Sum_probs=14.7
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
+|+-|+..+.+|+|||.
T Consensus 2 ~g~~IvieG~~GsGKsT 18 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTT 18 (195)
T ss_pred CceEEEEECCCCCCHHH
Confidence 46778899999999986
No 408
>PRK05748 replicative DNA helicase; Provisional
Probab=44.02 E-value=33 Score=29.67 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=14.6
Q ss_pred CCCeeeecccCCcccceee
Q psy7691 77 GRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~~ 95 (165)
|.-+++.|++|.|||...+
T Consensus 203 G~livIaarpg~GKT~~al 221 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFAL 221 (448)
T ss_pred CceEEEEeCCCCCchHHHH
Confidence 3447789999999998544
No 409
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=43.64 E-value=11 Score=26.23 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=15.5
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..|.-+.++++.|+|||..
T Consensus 9 ~~g~~~~i~G~nGsGKStL 27 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTL 27 (137)
T ss_dssp ETTSEEEEEESTTSSHHHH
T ss_pred cCCCEEEEEccCCCccccc
Confidence 3566788999999999974
No 410
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=43.60 E-value=11 Score=30.87 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=11.9
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
++++++||+|||..
T Consensus 2 i~i~G~t~~GKs~l 15 (287)
T TIGR00174 2 IFIMGPTAVGKSQL 15 (287)
T ss_pred EEEECCCCCCHHHH
Confidence 56899999999874
No 411
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=43.59 E-value=11 Score=27.85 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=12.4
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
-++++++.|+|||..
T Consensus 3 ~~~i~G~sGsGKttl 17 (179)
T TIGR02322 3 LIYVVGPSGAGKDTL 17 (179)
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999873
No 412
>KOG0060|consensus
Probab=43.36 E-value=12 Score=34.02 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.8
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+-+|.++++++++|+|||-.
T Consensus 458 V~~g~~LLItG~sG~GKtSL 477 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSL 477 (659)
T ss_pred ecCCCeEEEECCCCCchhHH
Confidence 56899999999999999864
No 413
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=43.29 E-value=43 Score=24.95 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=26.7
Q ss_pred HcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCC
Q psy7691 75 LSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~ 129 (165)
..-..|+..+.+|+||+...- ++|..+. | ..++.+.+=+..
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~----------~IH~~s~--r--~~~pfi~vnc~~ 60 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLAR----------AIHNNSP--R--KNGPFISVNCAA 60 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHH----------HHHHCST--T--TTS-EEEEETTT
T ss_pred CCCCCEEEEcCCCCcHHHHHH----------HHHHhhh--c--ccCCeEEEehhh
Confidence 444689999999999998533 7777432 2 355666666655
No 414
>PRK14532 adenylate kinase; Provisional
Probab=43.25 E-value=12 Score=27.96 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=12.2
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
.++..+++|||||.
T Consensus 2 ~i~~~G~pGsGKsT 15 (188)
T PRK14532 2 NLILFGPPAAGKGT 15 (188)
T ss_pred EEEEECCCCCCHHH
Confidence 57889999999986
No 415
>PLN03188 kinesin-12 family protein; Provisional
Probab=42.90 E-value=17 Score=35.73 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=19.4
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
+..++.|.| |++-++||||||..++
T Consensus 158 V~svLdGyNaTIFAYGQTGSGKTYTM~ 184 (1320)
T PLN03188 158 VENCLAGFNSSVFAYGQTGSGKTYTMW 184 (1320)
T ss_pred HHHHhcCCcceeecCCCCCCCCCEeeC
Confidence 344578865 7889999999998765
No 416
>PRK08233 hypothetical protein; Provisional
Probab=42.89 E-value=12 Score=27.41 Aligned_cols=13 Identities=38% Similarity=0.452 Sum_probs=10.7
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
|.+.+++|||||.
T Consensus 6 I~I~G~~GsGKtT 18 (182)
T PRK08233 6 ITIAAVSGGGKTT 18 (182)
T ss_pred EEEECCCCCCHHH
Confidence 5567999999986
No 417
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=42.79 E-value=12 Score=29.70 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.3
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+-.|.-+.+++|.|||||..
T Consensus 28 i~~Ge~vaI~GpSGSGKSTL 47 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTL 47 (226)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 35677788999999999873
No 418
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=42.59 E-value=13 Score=25.12 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=11.7
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
|++++..|+|||..
T Consensus 2 I~V~G~~g~GKTsL 15 (119)
T PF08477_consen 2 IVVLGDSGVGKTSL 15 (119)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECcCCCCHHHH
Confidence 57889999999874
No 419
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=42.17 E-value=25 Score=28.52 Aligned_cols=14 Identities=36% Similarity=0.480 Sum_probs=12.8
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
.++..+++|+|||.
T Consensus 38 ~lll~Gp~GtGKT~ 51 (337)
T PRK12402 38 HLLVQGPPGSGKTA 51 (337)
T ss_pred eEEEECCCCCCHHH
Confidence 68899999999995
No 420
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=42.14 E-value=29 Score=20.06 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=19.4
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHH
Q psy7691 129 NNGKQAKELIAVLTEASQPIPPQL 152 (165)
Q Consensus 129 ~~~~~~~~i~~~l~~~~~~~p~~~ 152 (165)
.+-...+-+.++..+.++++|+|+
T Consensus 18 ddT~v~r~l~~yY~~k~~~~P~WL 41 (41)
T PF14475_consen 18 DDTHVHRVLRKYYTEKGRPFPGWL 41 (41)
T ss_pred chhHHHHHHHHHHHHcCCCCCCcC
Confidence 345677888899999999999885
No 421
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=42.11 E-value=13 Score=27.40 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=11.7
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
++..++.|||||..
T Consensus 6 i~i~G~~GsGKsTl 19 (188)
T TIGR01360 6 IFIVGGPGSGKGTQ 19 (188)
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999873
No 422
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=42.02 E-value=33 Score=29.72 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=15.3
Q ss_pred CCCeeeecccCCcccceee
Q psy7691 77 GRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~~ 95 (165)
|.-++.++++|+|||....
T Consensus 221 ~~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLA 239 (424)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5567889999999997544
No 423
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=41.79 E-value=42 Score=32.05 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=34.6
Q ss_pred ceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHH------HHHHHHHHhcC
Q psy7691 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA------KELIAVLTEAS 145 (165)
Q Consensus 92 ~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~------~~i~~~l~~~~ 145 (165)
++|+....|.+.=-=.|--||+||.|..|.+-.+++-.+ +++ ..+..++...+
T Consensus 502 LhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD-~L~r~f~~~~ri~~~~~~l~ 560 (925)
T PRK12903 502 LYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD-QLFRRFSNFDKIKEAFKKLG 560 (925)
T ss_pred cEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch-HHHHHhCCHHHHHHHHHhcC
Confidence 477776677543222355699999999999888888774 333 35555555543
No 424
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=41.75 E-value=13 Score=27.54 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.2
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
|+-++.+++.|||||..
T Consensus 2 ~~~i~l~G~~gsGKst~ 18 (175)
T cd00227 2 GRIIILNGGSSAGKSSI 18 (175)
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56688999999999873
No 425
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=41.67 E-value=63 Score=26.52 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=32.3
Q ss_pred eeeecccCCcccce---------eeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 80 MVGIAQTGSGKTLA---------VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 80 i~~~a~tgsGKt~~---------~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
|++.+..|+|||.| |+-=+||....--+.++.-.........++.+=..+ ++...++...+.+
T Consensus 4 vIVTGlSGAGKsvAl~~lEDlGyycvDNLPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs-~~~~~~l~~~l~~ 75 (286)
T COG1660 4 VIVTGLSGAGKSVALRVLEDLGYYCVDNLPPQLLPKLADLMLTLESRITKVAVVIDVRS-REFFGDLEEVLDE 75 (286)
T ss_pred EEEecCCCCcHHHHHHHHHhcCeeeecCCCHHHHHHHHHHHhhcccCCceEEEEEeccc-chhHHHHHHHHHH
Confidence 57889999999986 444457755432222321122222333444443333 4555555544443
No 426
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=41.40 E-value=46 Score=30.15 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=50.3
Q ss_pred cCCCcHHHHHHHHhCCCCCCch------HHHH---------------HHHHHHcCCCeeeecccCCcccceeeecCC---
Q psy7691 44 EGCFPNAVLQHLKGQGFEEPTA------IQAQ---------------GWPIALSGRDMVGIAQTGSGKTLAVINFDY--- 99 (165)
Q Consensus 44 ~l~l~~~l~~~l~~~g~~~~t~------~Q~~---------------a~~~~l~G~di~~~a~tgsGKt~~~~~~~l--- 99 (165)
+.+|++.+...|.+.|++.-+- +++. .|..+..|.|++-++. .|++..|-
T Consensus 455 TKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsL------VAIlDADKeGF 528 (663)
T COG0556 455 TKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSL------VAILDADKEGF 528 (663)
T ss_pred hHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeE------EEEeecCcccc
Confidence 3579999999999999875321 1111 3445567778777661 12232322
Q ss_pred CCChhHHHHhhccCCCCCCCCceEEEECCC
Q psy7691 100 PNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129 (165)
Q Consensus 100 P~~~~~~i~r~gr~~r~~~~g~~~~~~~p~ 129 (165)
..+-.+.||-+||++|. ..|.++++..--
T Consensus 529 LRse~SLIQtIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 529 LRSERSLIQTIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred ccccchHHHHHHHHhhc-cCCeEEEEchhh
Confidence 23456799999999884 567777776543
No 427
>KOG0240|consensus
Probab=41.36 E-value=29 Score=31.31 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=17.0
Q ss_pred HHHcCCC--eeeecccCCccccee
Q psy7691 73 IALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 73 ~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
-++.|.+ |++.++||+|||-..
T Consensus 77 dVL~GYNGTvfaYGqT~sGKTytm 100 (607)
T KOG0240|consen 77 DVLLGYNGTVFAYGQTGSGKTYTM 100 (607)
T ss_pred HHhcccceeEEEecCCCCCcceee
Confidence 3477765 788889999999743
No 428
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=41.32 E-value=14 Score=28.43 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.7
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
+..++..+++|+|||-
T Consensus 42 ~~~~~l~G~~G~GKT~ 57 (227)
T PRK08903 42 DRFFYLWGEAGSGRSH 57 (227)
T ss_pred CCeEEEECCCCCCHHH
Confidence 3568899999999985
No 429
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=40.94 E-value=16 Score=30.69 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=17.1
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+..+++++..+++|+|||..
T Consensus 61 l~~~~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTH 80 (327)
T ss_pred HhcCCcEEEEeCCCChHHHH
Confidence 35578999999999999985
No 430
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=40.93 E-value=14 Score=27.80 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=12.0
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
.++-.+|+|+|||.
T Consensus 5 ~~ll~GpsGvGKT~ 18 (171)
T PF07724_consen 5 NFLLAGPSGVGKTE 18 (171)
T ss_dssp EEEEESSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46778999999996
No 431
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=40.93 E-value=14 Score=27.33 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=11.2
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
++..+++|||||.
T Consensus 2 i~i~G~pGsGKst 14 (183)
T TIGR01359 2 VFVLGGPGSGKGT 14 (183)
T ss_pred EEEECCCCCCHHH
Confidence 5678999999987
No 432
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=40.75 E-value=14 Score=25.89 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=11.0
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
+.+++++|||||.
T Consensus 2 I~i~G~~GsGKst 14 (147)
T cd02020 2 IAIDGPAGSGKST 14 (147)
T ss_pred EEEECCCCCCHHH
Confidence 4678899999987
No 433
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=40.70 E-value=13 Score=25.88 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.0
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
|..++..+++|+|||..
T Consensus 1 ~~~i~l~G~~~~GKstl 17 (157)
T cd04164 1 GIKVVIVGKPNVGKSSL 17 (157)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 55688899999999863
No 434
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=40.56 E-value=49 Score=24.79 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCCCC-----chHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCC
Q psy7691 49 NAVLQHLKGQGFEEP-----TAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPN 101 (165)
Q Consensus 49 ~~l~~~l~~~g~~~~-----t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~ 101 (165)
+++.+..++.||... +..-...+...+.++-++.++++|.||+. ++|.-+|.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSS-LiN~L~~~ 58 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSS-LINALLPE 58 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHH-HHHHHHTS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHH-HHHHHHhh
Confidence 456666777787542 22333455667888888999999999995 66666674
No 435
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=40.56 E-value=16 Score=27.09 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=16.0
Q ss_pred cCCCeeeecccCCcccceee
Q psy7691 76 SGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~~ 95 (165)
.|.=++..|++|+|||...+
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~ 50 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLAL 50 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHH
Confidence 56557889999999998654
No 436
>PRK06217 hypothetical protein; Validated
Probab=40.47 E-value=14 Score=27.67 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=12.1
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
.|++.+.+|||||.
T Consensus 3 ~I~i~G~~GsGKST 16 (183)
T PRK06217 3 RIHITGASGSGTTT 16 (183)
T ss_pred EEEEECCCCCCHHH
Confidence 37889999999986
No 437
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=40.46 E-value=11 Score=32.50 Aligned_cols=16 Identities=50% Similarity=0.679 Sum_probs=14.0
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
.+++..+++|+|||..
T Consensus 109 ~~iLl~Gp~GtGKT~l 124 (412)
T PRK05342 109 SNILLIGPTGSGKTLL 124 (412)
T ss_pred ceEEEEcCCCCCHHHH
Confidence 5699999999999974
No 438
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=40.27 E-value=1.8e+02 Score=23.10 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=33.3
Q ss_pred ccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHH---cCCCeeeecccCCcccceee
Q psy7691 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIAL---SGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 41 ~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l---~G~di~~~a~tgsGKt~~~~ 95 (165)
.|+-..-|+.++=.+.. ++- .-+.|.+....+. .|.+.+.+--.|.|||- ||
T Consensus 4 ~w~p~~~P~wLl~E~e~-~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTs-VI 58 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTS-VI 58 (229)
T ss_pred CCCchhChHHHHHHHHc-Cce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccc-hH
Confidence 34555556666555543 342 4667776554444 46788889999999995 55
No 439
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=40.02 E-value=28 Score=25.46 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.3
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
++..+++|+|||..
T Consensus 3 ~~~~G~~G~GKTt~ 16 (173)
T cd03115 3 ILLVGLQGVGKTTT 16 (173)
T ss_pred EEEECCCCCCHHHH
Confidence 45689999999874
No 440
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=39.91 E-value=14 Score=29.40 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=10.5
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
++..+|||+|||..
T Consensus 4 ~~i~GpT~tGKt~~ 17 (233)
T PF01745_consen 4 YLIVGPTGTGKTAL 17 (233)
T ss_dssp EEEE-STTSSHHHH
T ss_pred EEEECCCCCChhHH
Confidence 35789999999974
No 441
>KOG0733|consensus
Probab=39.83 E-value=22 Score=32.78 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=0.0
Q ss_pred CccccccCCCcHHHHHHHHhC-CCCCCchHHHHHHHHHHcCCCeeeecccCCcccce-----------eeecCCCCChhH
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQ-GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA-----------VINFDYPNSSED 105 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~-g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~-----------~~~~~lP~~~~~ 105 (165)
|-.+|.+.+=-+++...|+.+ -+.--.|-+.+++..-. -.-|+.++|+|.|||+. |+..-=|.-...
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Q ss_pred HHHhhccC-----CCCCCCCceEEEE
Q psy7691 106 YIHRIGRT-----GRCASSGTAYTFF 126 (165)
Q Consensus 106 ~i~r~gr~-----~r~~~~g~~~~~~ 126 (165)
|+-..-|+ .|+....+|++|+
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFF 610 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFF 610 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEe
No 442
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=39.82 E-value=35 Score=29.72 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=13.8
Q ss_pred CeeeecccCCcccceee
Q psy7691 79 DMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 79 di~~~a~tgsGKt~~~~ 95 (165)
-++.++++|+|||....
T Consensus 97 vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAA 113 (437)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47789999999998543
No 443
>PRK08727 hypothetical protein; Validated
Probab=39.75 E-value=14 Score=28.95 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=12.4
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
.++..+++|+|||-
T Consensus 43 ~l~l~G~~G~GKTh 56 (233)
T PRK08727 43 WLYLSGPAGTGKTH 56 (233)
T ss_pred eEEEECCCCCCHHH
Confidence 48899999999994
No 444
>PLN02199 shikimate kinase
Probab=39.66 E-value=22 Score=29.57 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=18.5
Q ss_pred HHHHHcCCCeeeecccCCcccc
Q psy7691 71 WPIALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 71 ~~~~l~G~di~~~a~tgsGKt~ 92 (165)
+-..+.|..|+.++..|+|||.
T Consensus 96 i~~~l~~~~I~LIG~~GSGKST 117 (303)
T PLN02199 96 VKPYLNGRSMYLVGMMGSGKTT 117 (303)
T ss_pred HHHHcCCCEEEEECCCCCCHHH
Confidence 3345778999999999999987
No 445
>PRK05541 adenylylsulfate kinase; Provisional
Probab=39.31 E-value=15 Score=27.05 Aligned_cols=18 Identities=33% Similarity=0.272 Sum_probs=14.9
Q ss_pred HcCCCeeeecccCCcccc
Q psy7691 75 LSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~ 92 (165)
..|.-++.+++.|||||.
T Consensus 5 ~~~~~I~i~G~~GsGKst 22 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTT 22 (176)
T ss_pred CCCCEEEEEcCCCCCHHH
Confidence 356678899999999986
No 446
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=39.30 E-value=15 Score=27.25 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=11.6
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
|++.+++|||||.
T Consensus 2 I~i~G~pGsGKst 14 (194)
T cd01428 2 ILLLGPPGSGKGT 14 (194)
T ss_pred EEEECCCCCCHHH
Confidence 6789999999986
No 447
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=39.02 E-value=55 Score=27.09 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=17.1
Q ss_pred HHHHHHcC-----CCeeeecccCCccccee
Q psy7691 70 GWPIALSG-----RDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 70 a~~~~l~G-----~di~~~a~tgsGKt~~~ 94 (165)
.++.++.| .=+...+++|+|||...
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~ 113 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLC 113 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHH
Confidence 45665554 22558999999999744
No 448
>PHA00547 hypothetical protein
Probab=39.02 E-value=19 Score=29.74 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=18.5
Q ss_pred eeeecccCCcccce---------------eeecCCCCC
Q psy7691 80 MVGIAQTGSGKTLA---------------VINFDYPNS 102 (165)
Q Consensus 80 i~~~a~tgsGKt~~---------------~~~~~lP~~ 102 (165)
-+..++-|+|||+. |.||.++.+
T Consensus 78 s~i~G~LGsGKTlLMT~LA~~~K~K~~~lYSNY~L~ds 115 (337)
T PHA00547 78 SVIIGKLGTGKTLLLTYLSQTMKLLTDEIYSNYPLEDD 115 (337)
T ss_pred eEEeccCCCchhHHHHHHHHHHHhhheeeeeccCCCCC
Confidence 45799999999984 688988843
No 449
>PRK13975 thymidylate kinase; Provisional
Probab=38.78 E-value=15 Score=27.47 Aligned_cols=16 Identities=38% Similarity=0.314 Sum_probs=13.6
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
|+-|+..++.|+|||.
T Consensus 2 ~~~I~ieG~~GsGKtT 17 (196)
T PRK13975 2 NKFIVFEGIDGSGKTT 17 (196)
T ss_pred CeEEEEECCCCCCHHH
Confidence 4567889999999987
No 450
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=38.70 E-value=45 Score=29.46 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=17.3
Q ss_pred HHcCCCeeeecccCCcccceee
Q psy7691 74 ALSGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~~~ 95 (165)
+.....|+..+++|+||+...-
T Consensus 216 a~~~~pvli~Ge~GtGK~~lA~ 237 (534)
T TIGR01817 216 ARSNSTVLLRGESGTGKELIAK 237 (534)
T ss_pred hCcCCCEEEECCCCccHHHHHH
Confidence 3455789999999999998543
No 451
>PRK00698 tmk thymidylate kinase; Validated
Probab=38.58 E-value=13 Score=27.80 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.4
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
+|+-|+..++.|||||.
T Consensus 2 ~~~~I~ieG~~gsGKsT 18 (205)
T PRK00698 2 RGMFITIEGIDGAGKST 18 (205)
T ss_pred CceEEEEECCCCCCHHH
Confidence 46668889999999987
No 452
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=38.40 E-value=36 Score=32.71 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=32.6
Q ss_pred CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 78 RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
.-.++-..+|||||+..+ ++-+.-+.. ..-+.+++++ .++++..|+.+.+..-.
T Consensus 274 ~~G~IWHtqGSGKTlTm~----------~~A~~l~~~---~~~~~v~fvv-DR~dLd~Q~~~~f~~~~ 327 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMF----------KLARLLLEL---PKNPKVLFVV-DRKDLDDQTSDEFQSFG 327 (962)
T ss_pred CceEEEeecCCchHHHHH----------HHHHHHHhc---cCCCeEEEEe-chHHHHHHHHHHHHHHH
Confidence 347788899999999755 343332221 2223344443 44788888887776543
No 453
>PRK10867 signal recognition particle protein; Provisional
Probab=38.35 E-value=32 Score=29.99 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.4
Q ss_pred eeeecccCCcccceee
Q psy7691 80 MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 80 i~~~a~tgsGKt~~~~ 95 (165)
++.++++|+|||....
T Consensus 103 I~~vG~~GsGKTTtaa 118 (433)
T PRK10867 103 IMMVGLQGAGKTTTAG 118 (433)
T ss_pred EEEECCCCCcHHHHHH
Confidence 6789999999998554
No 454
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=38.26 E-value=16 Score=25.47 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=11.9
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
-+...+++|+|||.
T Consensus 5 ~i~~~G~~g~GKtt 18 (168)
T cd04163 5 FVAIVGRPNVGKST 18 (168)
T ss_pred EEEEECCCCCCHHH
Confidence 46789999999986
No 455
>PRK08084 DNA replication initiation factor; Provisional
Probab=38.23 E-value=19 Score=28.19 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=13.5
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
+..++..+++|+|||-
T Consensus 45 ~~~l~l~Gp~G~GKTh 60 (235)
T PRK08084 45 SGYIYLWSREGAGRSH 60 (235)
T ss_pred CCeEEEECCCCCCHHH
Confidence 3568899999999994
No 456
>PRK13974 thymidylate kinase; Provisional
Probab=38.18 E-value=57 Score=25.00 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=31.4
Q ss_pred cCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHH
Q psy7691 76 SGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
.|.-+...+.+|||||...- ....++. ..|.......++..-.|........|.+++.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~------~l~~~l~---~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~ 59 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQID------HLSKWLP---SSGLMPKGAKLIITREPGGTLLGKSLRELLL 59 (212)
T ss_pred CCcEEEEECCCCCCHHHHHH------HHHHHHH---hcCccccCCeeeeeeCCCCCchHHHHHHHHc
Confidence 46678889999999987321 1111221 1121112233444445655556667777765
No 457
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=38.02 E-value=28 Score=26.73 Aligned_cols=18 Identities=33% Similarity=0.278 Sum_probs=14.1
Q ss_pred CCCeeeecccCCccccee
Q psy7691 77 GRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~ 94 (165)
|.=+...+++|+|||...
T Consensus 19 g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 19 GSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345678999999999854
No 458
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=37.77 E-value=16 Score=31.69 Aligned_cols=16 Identities=50% Similarity=0.679 Sum_probs=14.0
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
.+++..++||+|||..
T Consensus 117 ~~iLL~GP~GsGKT~l 132 (413)
T TIGR00382 117 SNILLIGPTGSGKTLL 132 (413)
T ss_pred ceEEEECCCCcCHHHH
Confidence 4699999999999884
No 459
>PRK05595 replicative DNA helicase; Provisional
Probab=37.71 E-value=39 Score=29.21 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=16.9
Q ss_pred HHHHHcC----CCeeeecccCCcccceee
Q psy7691 71 WPIALSG----RDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G----~di~~~a~tgsGKt~~~~ 95 (165)
++.+..| .=+++.|.+|.|||...+
T Consensus 191 ld~~~~G~~~g~liviaarpg~GKT~~al 219 (444)
T PRK05595 191 LDAKTSGFQKGDMILIAARPSMGKTTFAL 219 (444)
T ss_pred HHHhcCCCCCCcEEEEEecCCCChHHHHH
Confidence 3445444 335678999999998544
No 460
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=37.66 E-value=30 Score=29.96 Aligned_cols=19 Identities=42% Similarity=0.461 Sum_probs=15.0
Q ss_pred cCCCeeeecccCCccccee
Q psy7691 76 SGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~ 94 (165)
.+.-++.++++|+|||...
T Consensus 205 ~~~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTL 223 (407)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556788999999999744
No 461
>KOG4150|consensus
Probab=37.61 E-value=40 Score=30.96 Aligned_cols=48 Identities=21% Similarity=0.059 Sum_probs=37.4
Q ss_pred CcHHHHHH-HHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCccccee
Q psy7691 47 FPNAVLQH-LKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 47 l~~~l~~~-l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~ 94 (165)
++=++... ++.+-......+|..++..+..|+++.+...+.+||.+++
T Consensus 270 ~~~E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~ 318 (1034)
T KOG4150|consen 270 DFWESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCP 318 (1034)
T ss_pred hHHHHHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCc
Confidence 34444444 3445666778899999999999999999999999998864
No 462
>PRK14531 adenylate kinase; Provisional
Probab=37.57 E-value=17 Score=27.24 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=12.5
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
.++..+++|||||.
T Consensus 4 ~i~i~G~pGsGKsT 17 (183)
T PRK14531 4 RLLFLGPPGAGKGT 17 (183)
T ss_pred EEEEECCCCCCHHH
Confidence 57889999999987
No 463
>KOG0090|consensus
Probab=37.56 E-value=25 Score=28.01 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.6
Q ss_pred CCCeeeecccCCcccceee
Q psy7691 77 GRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~~ 95 (165)
+.+++.+++.+||||..|.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~ 56 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFT 56 (238)
T ss_pred CCcEEEEecCCCCceeeee
Confidence 4689999999999999774
No 464
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=37.48 E-value=14 Score=28.65 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=14.7
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-+++.|++|+|||..
T Consensus 12 ~G~l~lI~G~~G~GKT~~ 29 (242)
T cd00984 12 PGDLIIIAARPSMGKTAF 29 (242)
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 455678899999999974
No 465
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=37.29 E-value=18 Score=22.61 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=11.1
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
+...++.|+|||..
T Consensus 2 i~i~G~~gsGKst~ 15 (69)
T cd02019 2 IAITGGSGSGKSTV 15 (69)
T ss_pred EEEECCCCCCHHHH
Confidence 45679999999873
No 466
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=36.87 E-value=17 Score=25.88 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=10.9
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
++.+++.|+|||.
T Consensus 2 i~l~G~~GsGKST 14 (150)
T cd02021 2 IVVMGVSGSGKST 14 (150)
T ss_pred EEEEcCCCCCHHH
Confidence 4678999999976
No 467
>PRK06762 hypothetical protein; Provisional
Probab=36.76 E-value=17 Score=26.41 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=11.8
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
=++.++..|||||.
T Consensus 4 li~i~G~~GsGKST 17 (166)
T PRK06762 4 LIIIRGNSGSGKTT 17 (166)
T ss_pred EEEEECCCCCCHHH
Confidence 35678999999987
No 468
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=36.70 E-value=17 Score=30.48 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.7
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
+.++..+++|+|||..
T Consensus 157 ~gvLL~GppGtGKT~l 172 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLL 172 (364)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4588999999999974
No 469
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=36.62 E-value=17 Score=27.34 Aligned_cols=13 Identities=38% Similarity=0.378 Sum_probs=10.7
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
+...+++|||||.
T Consensus 2 igi~G~~GsGKST 14 (198)
T cd02023 2 IGIAGGSGSGKTT 14 (198)
T ss_pred EEEECCCCCCHHH
Confidence 3568999999987
No 470
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=36.49 E-value=19 Score=25.53 Aligned_cols=14 Identities=43% Similarity=0.603 Sum_probs=11.9
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
.++.+++.|+|||.
T Consensus 1 ~i~l~G~~GsGKst 14 (154)
T cd00464 1 NIVLIGMMGAGKTT 14 (154)
T ss_pred CEEEEcCCCCCHHH
Confidence 36789999999987
No 471
>PRK00625 shikimate kinase; Provisional
Probab=36.45 E-value=17 Score=27.32 Aligned_cols=14 Identities=21% Similarity=0.124 Sum_probs=12.5
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
+|+.++..|+|||.
T Consensus 2 ~I~LiG~pGsGKTT 15 (173)
T PRK00625 2 QIFLCGLPTVGKTS 15 (173)
T ss_pred EEEEECCCCCCHHH
Confidence 57889999999986
No 472
>KOG4280|consensus
Probab=36.30 E-value=33 Score=31.08 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=18.6
Q ss_pred HHHcCCC--eeeecccCCcccceee
Q psy7691 73 IALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 73 ~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
-++.|-| |++-+.||+|||...+
T Consensus 80 svl~GyNgtvFaYGQTGsGKTyTM~ 104 (574)
T KOG4280|consen 80 SVLEGYNGTVFAYGQTGSGKTYTMI 104 (574)
T ss_pred HHhcccCceEEEeccCCCCCceEee
Confidence 3477865 8899999999998654
No 473
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=36.05 E-value=49 Score=24.34 Aligned_cols=14 Identities=43% Similarity=0.596 Sum_probs=12.2
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
-++.++++|+|||.
T Consensus 3 rimliG~~g~GKTT 16 (143)
T PF10662_consen 3 RIMLIGPSGSGKTT 16 (143)
T ss_pred eEEEECCCCCCHHH
Confidence 46789999999997
No 474
>PRK06904 replicative DNA helicase; Validated
Probab=36.04 E-value=64 Score=28.35 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=14.0
Q ss_pred CCCeeeecccCCcccceee
Q psy7691 77 GRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~~ 95 (165)
|.=+++.|.+|.|||...+
T Consensus 221 G~LiiIaarPg~GKTafal 239 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAM 239 (472)
T ss_pred CcEEEEEeCCCCChHHHHH
Confidence 3346678899999998543
No 475
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=35.71 E-value=1.2e+02 Score=28.96 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=14.2
Q ss_pred CeeeecccCCcccceee
Q psy7691 79 DMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 79 di~~~a~tgsGKt~~~~ 95 (165)
=++.+||.|+|||....
T Consensus 39 L~li~APAGfGKttl~a 55 (894)
T COG2909 39 LILISAPAGFGKTTLLA 55 (894)
T ss_pred EEEEeCCCCCcHHHHHH
Confidence 37889999999998654
No 476
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=35.70 E-value=37 Score=29.76 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=13.7
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
.+++..+++|+|||.
T Consensus 51 ~~ILliGp~G~GKT~ 65 (443)
T PRK05201 51 KNILMIGPTGVGKTE 65 (443)
T ss_pred ceEEEECCCCCCHHH
Confidence 689999999999995
No 477
>PRK06893 DNA replication initiation factor; Validated
Probab=35.58 E-value=18 Score=28.18 Aligned_cols=13 Identities=23% Similarity=0.151 Sum_probs=11.5
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
++..+++|+|||-
T Consensus 42 l~l~G~~G~GKTh 54 (229)
T PRK06893 42 FYIWGGKSSGKSH 54 (229)
T ss_pred EEEECCCCCCHHH
Confidence 5789999999994
No 478
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=35.56 E-value=17 Score=31.70 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=14.3
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
+..++..+++|+|||..
T Consensus 217 p~gVLL~GPPGTGKT~L 233 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLL 233 (438)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35688899999999984
No 479
>PRK07952 DNA replication protein DnaC; Validated
Probab=35.29 E-value=37 Score=27.09 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.4
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++..+++|+|||-.
T Consensus 100 ~~~~l~G~~GtGKThL 115 (244)
T PRK07952 100 ASFIFSGKPGTGKNHL 115 (244)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3678899999999963
No 480
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=35.18 E-value=29 Score=32.14 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=21.3
Q ss_pred CCChhHHHHhhccCCCCC--CCCceEEEEC
Q psy7691 100 PNSSEDYIHRIGRTGRCA--SSGTAYTFFT 127 (165)
Q Consensus 100 P~~~~~~i~r~gr~~r~~--~~g~~~~~~~ 127 (165)
++++++.+||.||..|.| ..|....+..
T Consensus 519 ~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 519 LAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred CCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 566889999999999999 4555555544
No 481
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=35.06 E-value=33 Score=31.05 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=22.7
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.+++.|.+|.... .-.+++.|..|||||-.
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~v 31 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRV 31 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhh
Confidence 4678888876444 44677899999999974
No 482
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=35.05 E-value=45 Score=27.12 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=16.8
Q ss_pred HHHHHcC-----CCeeeecccCCccccee
Q psy7691 71 WPIALSG-----RDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G-----~di~~~a~tgsGKt~~~ 94 (165)
++.++.| .=+.+.+++|+|||...
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455553 34568999999999843
No 483
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=34.95 E-value=34 Score=34.81 Aligned_cols=32 Identities=28% Similarity=0.152 Sum_probs=27.6
Q ss_pred CCchHHHHHHHHHHcC--CCeeeecccCCcccce
Q psy7691 62 EPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G--~di~~~a~tgsGKt~~ 93 (165)
..++-|.+|+..++.+ +-+++++..|+|||..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~ 868 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ 868 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH
Confidence 4789999999999876 5578999999999975
No 484
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=34.77 E-value=19 Score=27.13 Aligned_cols=13 Identities=38% Similarity=0.399 Sum_probs=10.7
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
|.+.++.|||||.
T Consensus 2 IgI~G~sgSGKTT 14 (194)
T PF00485_consen 2 IGIAGPSGSGKTT 14 (194)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3468999999987
No 485
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=34.53 E-value=19 Score=27.04 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=14.3
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.|.-+...++.|+|||.
T Consensus 2 ~ge~i~l~G~sGsGKST 18 (176)
T PRK09825 2 AGESYILMGVSGSGKSL 18 (176)
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46667889999999987
No 486
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=34.37 E-value=20 Score=26.96 Aligned_cols=13 Identities=38% Similarity=0.376 Sum_probs=10.8
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
+.+.+.+|||||.
T Consensus 2 i~i~G~sgsGKtt 14 (179)
T cd02028 2 VGIAGPSGSGKTT 14 (179)
T ss_pred EEEECCCCCCHHH
Confidence 4568899999987
No 487
>PRK05480 uridine/cytidine kinase; Provisional
Probab=34.34 E-value=20 Score=27.31 Aligned_cols=15 Identities=33% Similarity=0.246 Sum_probs=12.2
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
-|..++++|||||..
T Consensus 8 iI~I~G~sGsGKTTl 22 (209)
T PRK05480 8 IIGIAGGSGSGKTTV 22 (209)
T ss_pred EEEEECCCCCCHHHH
Confidence 466889999999873
No 488
>PRK06620 hypothetical protein; Validated
Probab=34.26 E-value=19 Score=27.91 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=12.3
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
.++..+++|+|||-
T Consensus 46 ~l~l~Gp~G~GKTh 59 (214)
T PRK06620 46 TLLIKGPSSSGKTY 59 (214)
T ss_pred eEEEECCCCCCHHH
Confidence 37889999999985
No 489
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=34.24 E-value=22 Score=24.66 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.1
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
++..+++.|+|||..
T Consensus 1 ~i~i~G~~~~GKssl 15 (159)
T cd04159 1 EITLVGLQNSGKTTL 15 (159)
T ss_pred CEEEEcCCCCCHHHH
Confidence 467889999999864
No 490
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=34.19 E-value=20 Score=27.58 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.7
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
+|.-++..+++|+|||..
T Consensus 19 ~G~~~~i~G~~G~GKT~l 36 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIF 36 (229)
T ss_pred CCeEEEEECCCCCChHHH
Confidence 356788999999999873
No 491
>PLN02390 molybdopterin synthase catalytic subunit
Probab=34.13 E-value=39 Score=23.73 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=28.9
Q ss_pred HHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChH
Q psy7691 106 YIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151 (165)
Q Consensus 106 ~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~ 151 (165)
..||+|+- ..|.....+...+|.+.+...-....++.....+|-|
T Consensus 57 i~HR~G~l-~vge~~v~v~v~s~HR~~Af~A~~~~id~lK~~vPIW 101 (111)
T PLN02390 57 VAHRLGPV-PVGETSVFVAVSSVHRADALDACKFLIDELKASVPIW 101 (111)
T ss_pred EEEeeecc-cCCCEEEEEEEECCCHHHHHHHHHHHHHHHhhcCCEE
Confidence 46777763 4455555566666775666666666667777777765
No 492
>PRK12377 putative replication protein; Provisional
Probab=34.08 E-value=38 Score=27.13 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=13.2
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
..++..+++|+|||-
T Consensus 102 ~~l~l~G~~GtGKTh 116 (248)
T PRK12377 102 TNFVFSGKPGTGKNH 116 (248)
T ss_pred CeEEEECCCCCCHHH
Confidence 568899999999995
No 493
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=34.06 E-value=20 Score=27.36 Aligned_cols=15 Identities=33% Similarity=0.109 Sum_probs=12.0
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
.=+..++++|||||.
T Consensus 7 ~vi~I~G~sGsGKST 21 (207)
T TIGR00235 7 IIIGIGGGSGSGKTT 21 (207)
T ss_pred EEEEEECCCCCCHHH
Confidence 345678999999987
No 494
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=34.01 E-value=30 Score=30.33 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=17.9
Q ss_pred HHHHHHcC-----CCeeeecccCCcccce
Q psy7691 70 GWPIALSG-----RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 70 a~~~~l~G-----~di~~~a~tgsGKt~~ 93 (165)
.++.++.| .-+++.+++|+|||..
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l 279 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLL 279 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHH
Confidence 45555544 5688999999999984
No 495
>PRK04328 hypothetical protein; Provisional
Probab=33.86 E-value=39 Score=26.74 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=14.8
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-+++.+++|+|||..
T Consensus 22 ~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356688999999999974
No 496
>KOG0738|consensus
Probab=33.81 E-value=23 Score=30.80 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=13.9
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
+-++.++|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 4689999999999984
No 497
>PRK14974 cell division protein FtsY; Provisional
Probab=33.65 E-value=48 Score=27.83 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=30.5
Q ss_pred CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc--HHHHHHHHHHHHhcCCCC
Q psy7691 79 DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN--GKQAKELIAVLTEASQPI 148 (165)
Q Consensus 79 di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~--~~~~~~i~~~l~~~~~~~ 148 (165)
-++.++++|+|||....+ +.+.+.. .|..+.++.... .....|+..+....+.++
T Consensus 142 vi~~~G~~GvGKTTtiak---------LA~~l~~------~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v 198 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAK---------LAYYLKK------NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKV 198 (336)
T ss_pred EEEEEcCCCCCHHHHHHH---------HHHHHHH------cCCeEEEecCCcCcHHHHHHHHHHHHHcCCce
Confidence 366899999999985431 1222211 233444444332 345567777777666544
No 498
>KOG0243|consensus
Probab=33.60 E-value=32 Score=33.23 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=17.9
Q ss_pred HHHcCCC--eeeecccCCccccee
Q psy7691 73 IALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 73 ~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
-++.|-+ |++-++||+|||...
T Consensus 123 eVl~GyNCTIFAYGQTGTGKTyTM 146 (1041)
T KOG0243|consen 123 EVLEGYNCTIFAYGQTGTGKTYTM 146 (1041)
T ss_pred HHhccCCceEEEecCCCCCceeee
Confidence 3578875 889999999999754
No 499
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=33.55 E-value=19 Score=26.85 Aligned_cols=15 Identities=27% Similarity=0.570 Sum_probs=13.0
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
..++.+++.|+|||.
T Consensus 5 ~~I~liG~~GaGKSt 19 (172)
T PRK05057 5 RNIFLVGPMGAGKST 19 (172)
T ss_pred CEEEEECCCCcCHHH
Confidence 468899999999986
No 500
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.54 E-value=20 Score=33.97 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=11.1
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
++++|+||+|||.
T Consensus 28 ~lI~G~nGsGKSS 40 (908)
T COG0419 28 FLIVGPNGAGKSS 40 (908)
T ss_pred EEEECCCCCcHHH
Confidence 3579999999987
Done!