Query psy7691
Match_columns 165
No_of_seqs 132 out of 1888
Neff 7.8
Searched_HMMs 29240
Date Sat Aug 17 00:56:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 99.8 6.2E-20 2.1E-24 143.4 10.4 123 13-144 2-125 (242)
2 2db3_A ATP-dependent RNA helic 99.8 6.9E-19 2.4E-23 148.5 10.6 114 24-146 40-154 (434)
3 3dkp_A Probable ATP-dependent 99.8 1.9E-18 6.4E-23 134.8 11.2 118 17-146 2-123 (245)
4 3fmo_B ATP-dependent RNA helic 99.7 6E-17 2.1E-21 131.0 10.0 109 26-147 75-188 (300)
5 2pl3_A Probable ATP-dependent 99.7 3E-16 1E-20 121.6 9.6 118 15-146 5-122 (236)
6 2i4i_A ATP-dependent RNA helic 99.6 3.3E-16 1.1E-20 129.6 8.8 109 27-144 2-124 (417)
7 1wrb_A DJVLGB; RNA helicase, D 99.6 1.5E-16 5.1E-21 124.7 5.0 112 24-144 5-123 (253)
8 3iuy_A Probable ATP-dependent 99.6 5.4E-16 1.9E-20 119.6 7.4 104 32-144 11-117 (228)
9 2oxc_A Probable ATP-dependent 99.6 1.3E-15 4.4E-20 118.0 9.1 102 32-146 16-117 (230)
10 3bor_A Human initiation factor 99.6 8E-16 2.7E-20 119.8 7.6 105 29-146 19-123 (237)
11 1qde_A EIF4A, translation init 99.6 3.3E-15 1.1E-19 114.6 9.3 101 32-145 6-106 (224)
12 1vec_A ATP-dependent RNA helic 99.6 5.6E-15 1.9E-19 111.8 9.5 95 40-147 3-97 (206)
13 1q0u_A Bstdead; DEAD protein, 99.6 3.7E-15 1.3E-19 114.3 7.6 96 38-146 2-97 (219)
14 3ly5_A ATP-dependent RNA helic 99.6 6.1E-15 2.1E-19 116.7 7.3 98 40-146 52-151 (262)
15 1t6n_A Probable ATP-dependent 99.6 1.5E-14 5.3E-19 110.6 9.3 97 37-146 11-107 (220)
16 2gxq_A Heat resistant RNA depe 99.5 2.2E-14 7.4E-19 108.5 9.6 96 41-146 2-97 (207)
17 3ber_A Probable ATP-dependent 99.5 6.8E-15 2.3E-19 115.7 6.7 95 37-144 40-134 (249)
18 2j0s_A ATP-dependent RNA helic 99.5 4.3E-14 1.5E-18 116.9 9.0 103 30-145 27-129 (410)
19 3fmp_B ATP-dependent RNA helic 99.5 4.7E-14 1.6E-18 119.6 8.2 105 28-145 77-186 (479)
20 3fht_A ATP-dependent RNA helic 99.5 1.5E-13 5.1E-18 113.1 9.8 98 37-147 22-121 (412)
21 3i5x_A ATP-dependent RNA helic 99.4 9.2E-14 3.1E-18 119.9 6.7 96 39-143 67-168 (563)
22 3sqw_A ATP-dependent RNA helic 99.4 9.4E-14 3.2E-18 120.9 6.6 99 36-143 13-117 (579)
23 3pey_A ATP-dependent RNA helic 99.4 3.1E-13 1.1E-17 110.3 9.3 95 38-145 3-99 (395)
24 1s2m_A Putative ATP-dependent 99.4 4.1E-13 1.4E-17 110.5 8.8 98 36-146 17-114 (400)
25 1fuu_A Yeast initiation factor 99.4 2.8E-13 9.4E-18 110.9 7.6 99 34-145 15-113 (394)
26 1xti_A Probable ATP-dependent 99.4 3.9E-13 1.3E-17 110.0 8.2 94 40-146 8-101 (391)
27 3eiq_A Eukaryotic initiation f 99.4 7.3E-13 2.5E-17 109.2 9.6 100 32-144 32-131 (414)
28 1hv8_A Putative ATP-dependent 99.3 2.9E-12 1E-16 103.5 7.6 92 39-144 5-97 (367)
29 2p6n_A ATP-dependent RNA helic 99.3 8.8E-12 3E-16 94.6 8.0 112 38-157 56-190 (191)
30 2db3_A ATP-dependent RNA helic 99.2 4.4E-12 1.5E-16 106.8 4.2 116 39-154 303-433 (434)
31 2jgn_A DBX, DDX3, ATP-dependen 99.2 8.4E-12 2.9E-16 94.1 4.8 122 37-158 47-182 (185)
32 2z0m_A 337AA long hypothetical 99.2 2.8E-11 9.6E-16 96.8 8.2 80 47-145 1-80 (337)
33 1oyw_A RECQ helicase, ATP-depe 99.1 3.7E-11 1.3E-15 103.8 5.5 88 40-146 2-90 (523)
34 3fho_A ATP-dependent RNA helic 99.1 1.7E-11 6E-16 105.2 3.4 119 15-146 93-214 (508)
35 2v1x_A ATP-dependent DNA helic 99.1 1.8E-10 6.2E-15 101.0 7.6 90 37-145 16-108 (591)
36 2i4i_A ATP-dependent RNA helic 99.0 2.4E-10 8.1E-15 94.3 6.7 115 38-160 278-414 (417)
37 2va8_A SSO2462, SKI2-type heli 99.0 2.7E-10 9.1E-15 101.3 7.3 89 39-142 7-96 (715)
38 2zj8_A DNA helicase, putative 99.0 2E-10 6.9E-15 102.2 4.1 87 41-142 2-89 (720)
39 1tf5_A Preprotein translocase 99.0 2.8E-10 9.6E-15 102.9 5.0 113 6-144 31-147 (844)
40 3oiy_A Reverse gyrase helicase 99.0 4.5E-10 1.5E-14 93.2 5.3 80 49-145 8-88 (414)
41 1fuk_A Eukaryotic initiation f 98.9 8.6E-11 2.9E-15 86.5 0.2 117 37-153 31-161 (165)
42 2p6r_A Afuhel308 helicase; pro 98.9 1.3E-10 4.4E-15 103.3 1.3 86 41-142 2-89 (702)
43 2hjv_A ATP-dependent RNA helic 98.9 5.3E-10 1.8E-14 82.1 4.3 111 37-147 36-160 (163)
44 3eaq_A Heat resistant RNA depe 98.9 4.8E-10 1.6E-14 86.0 3.3 112 37-148 32-157 (212)
45 2rb4_A ATP-dependent RNA helic 98.9 2.7E-10 9.3E-15 84.6 1.6 113 37-149 35-167 (175)
46 1t5i_A C_terminal domain of A 98.9 2.2E-10 7.5E-15 85.2 0.1 118 37-154 32-164 (172)
47 3i32_A Heat resistant RNA depe 98.8 1.9E-09 6.4E-14 87.3 3.3 113 36-148 28-154 (300)
48 4ddu_A Reverse gyrase; topoiso 98.8 8.4E-09 2.9E-13 96.2 6.7 77 51-144 67-144 (1104)
49 2ykg_A Probable ATP-dependent 98.8 6.3E-09 2.2E-13 91.6 5.3 83 52-145 3-85 (696)
50 1gku_B Reverse gyrase, TOP-RG; 98.7 9.9E-09 3.4E-13 95.3 6.7 79 51-147 46-125 (1054)
51 3eiq_A Eukaryotic initiation f 98.7 1.9E-09 6.5E-14 88.6 1.5 118 38-155 282-413 (414)
52 2yjt_D ATP-dependent RNA helic 98.2 1.7E-09 5.8E-14 79.9 0.0 103 38-148 32-156 (170)
53 2j0s_A ATP-dependent RNA helic 98.7 2.5E-09 8.4E-14 88.2 0.6 113 39-151 279-405 (410)
54 3tbk_A RIG-I helicase domain; 98.7 2.7E-08 9.1E-13 84.5 6.0 72 62-144 4-75 (555)
55 1nkt_A Preprotein translocase 98.6 1.3E-08 4.3E-13 92.5 4.1 109 9-144 59-175 (922)
56 3l9o_A ATP-dependent RNA helic 98.6 5.3E-09 1.8E-13 97.6 1.5 91 40-146 162-252 (1108)
57 4a2p_A RIG-I, retinoic acid in 98.6 3.1E-08 1.1E-12 84.3 5.8 75 59-144 4-78 (556)
58 2whx_A Serine protease/ntpase/ 98.6 1E-09 3.5E-14 96.7 -3.8 86 41-142 150-236 (618)
59 1s2m_A Putative ATP-dependent 98.6 9.9E-09 3.4E-13 84.2 1.9 116 39-154 261-390 (400)
60 2jlq_A Serine protease subunit 98.6 5.8E-09 2E-13 88.3 0.5 68 59-142 1-69 (451)
61 4a2q_A RIG-I, retinoic acid in 98.6 4.9E-08 1.7E-12 87.9 6.0 77 57-144 243-319 (797)
62 2fsf_A Preprotein translocase 98.6 1.6E-08 5.6E-13 91.4 2.3 109 9-144 25-138 (853)
63 3i5x_A ATP-dependent RNA helic 98.6 2.8E-08 9.7E-13 85.5 3.7 52 93-144 413-464 (563)
64 3b6e_A Interferon-induced heli 98.5 2.7E-08 9.3E-13 74.7 2.4 76 58-143 29-105 (216)
65 3sqw_A ATP-dependent RNA helic 98.5 4.1E-08 1.4E-12 85.2 3.8 51 93-143 362-412 (579)
66 1fuu_A Yeast initiation factor 98.5 1.2E-08 4.1E-13 83.2 0.0 77 70-154 315-391 (394)
67 1hv8_A Putative ATP-dependent 98.5 8E-08 2.7E-12 77.3 4.8 111 39-149 241-365 (367)
68 1tf5_A Preprotein translocase 98.5 3.8E-08 1.3E-12 89.1 3.0 107 37-144 433-564 (844)
69 4f92_B U5 small nuclear ribonu 98.5 1.5E-07 5.3E-12 91.0 6.5 88 47-145 66-158 (1724)
70 1gm5_A RECG; helicase, replica 98.5 1.2E-07 4E-12 85.7 5.3 80 49-145 356-441 (780)
71 4f92_B U5 small nuclear ribonu 98.5 1.7E-07 5.8E-12 90.7 6.4 84 46-143 910-994 (1724)
72 3fht_A ATP-dependent RNA helic 98.4 7.7E-08 2.6E-12 78.8 3.3 114 38-151 268-402 (412)
73 4a2w_A RIG-I, retinoic acid in 98.4 1.6E-07 5.6E-12 86.1 5.8 79 55-144 241-319 (936)
74 3fmp_B ATP-dependent RNA helic 98.4 2.5E-08 8.6E-13 84.3 0.0 73 70-150 389-468 (479)
75 1xti_A Probable ATP-dependent 98.4 5.6E-08 1.9E-12 79.2 1.7 114 38-151 252-380 (391)
76 2wv9_A Flavivirin protease NS2 98.4 5E-09 1.7E-13 93.2 -5.2 76 54-144 202-293 (673)
77 2ipc_A Preprotein translocase 98.4 1.5E-07 5.2E-12 85.7 3.6 69 57-144 75-143 (997)
78 2z0m_A 337AA long hypothetical 98.4 2.3E-07 7.9E-12 73.8 4.2 61 73-142 275-335 (337)
79 3llm_A ATP-dependent RNA helic 98.4 2.4E-07 8.3E-12 71.5 4.1 72 61-143 60-131 (235)
80 2xau_A PRE-mRNA-splicing facto 98.3 3.2E-07 1.1E-11 82.7 4.4 92 37-142 69-161 (773)
81 3jux_A Protein translocase sub 98.3 4.4E-07 1.5E-11 81.3 4.1 107 37-144 475-606 (822)
82 3oiy_A Reverse gyrase helicase 98.3 2.3E-07 7.8E-12 76.8 2.1 103 37-142 253-376 (414)
83 2xgj_A ATP-dependent RNA helic 98.3 5.5E-07 1.9E-11 83.4 4.6 72 56-144 81-152 (1010)
84 1rif_A DAR protein, DNA helica 98.2 6.7E-07 2.3E-11 70.7 3.9 109 17-145 66-181 (282)
85 3pey_A ATP-dependent RNA helic 98.2 4.5E-07 1.6E-11 73.5 2.7 105 38-142 245-370 (395)
86 4gl2_A Interferon-induced heli 98.2 1.8E-07 6E-12 82.4 0.2 73 62-144 7-80 (699)
87 2v1x_A ATP-dependent DNA helic 98.2 3.8E-07 1.3E-11 79.9 2.3 97 38-134 269-379 (591)
88 2whx_A Serine protease/ntpase/ 98.2 7.7E-07 2.6E-11 78.4 3.6 111 38-149 357-501 (618)
89 1oyw_A RECQ helicase, ATP-depe 98.2 4.4E-07 1.5E-11 78.2 2.0 98 38-135 238-349 (523)
90 2fwr_A DNA repair protein RAD2 98.1 2.6E-06 8.8E-11 71.7 6.0 63 62-143 93-155 (472)
91 2eyq_A TRCF, transcription-rep 98.1 5.4E-06 1.9E-10 77.7 8.3 84 46-146 587-677 (1151)
92 4a4z_A Antiviral helicase SKI2 98.1 1.6E-06 5.3E-11 80.3 4.2 72 57-145 35-106 (997)
93 2fz4_A DNA repair protein RAD2 98.1 5.4E-06 1.8E-10 64.3 6.1 63 62-143 93-155 (237)
94 1yks_A Genome polyprotein [con 98.1 1.4E-06 4.8E-11 73.5 2.5 57 94-150 263-323 (440)
95 2fsf_A Preprotein translocase 98.0 1.2E-05 4.1E-10 72.9 8.4 53 92-144 546-602 (853)
96 4ddu_A Reverse gyrase; topoiso 98.0 3.1E-06 1.1E-10 79.0 4.6 42 102-143 461-504 (1104)
97 3crv_A XPD/RAD3 related DNA he 98.0 2.9E-06 1E-10 73.4 3.9 68 59-146 1-72 (551)
98 3fho_A ATP-dependent RNA helic 98.0 9.7E-07 3.3E-11 75.6 0.6 114 38-151 359-493 (508)
99 2vl7_A XPD; helicase, unknown 98.0 4E-06 1.4E-10 72.5 4.4 67 58-144 4-74 (540)
100 2oca_A DAR protein, ATP-depend 98.0 3.1E-06 1.1E-10 71.9 3.6 68 62-144 113-180 (510)
101 4a2p_A RIG-I, retinoic acid in 98.0 2.4E-06 8.3E-11 72.6 2.6 94 37-132 391-511 (556)
102 1wp9_A ATP-dependent RNA helic 98.0 5E-06 1.7E-10 68.5 4.4 67 62-144 9-75 (494)
103 1nkt_A Preprotein translocase 97.9 5E-05 1.7E-09 69.3 10.5 54 92-145 580-637 (922)
104 1gku_B Reverse gyrase, TOP-RG; 97.9 5.3E-06 1.8E-10 77.1 3.4 43 101-143 424-468 (1054)
105 2jlq_A Serine protease subunit 97.9 5.7E-06 1.9E-10 69.9 3.0 91 38-128 190-310 (451)
106 2wv9_A Flavivirin protease NS2 97.9 6.4E-06 2.2E-10 73.3 3.4 52 97-148 500-555 (673)
107 2z83_A Helicase/nucleoside tri 97.9 2.8E-06 9.6E-11 72.0 0.8 55 73-142 17-71 (459)
108 3tbk_A RIG-I helicase domain; 97.8 1.4E-06 4.7E-11 73.8 -1.5 99 37-137 390-515 (555)
109 4a15_A XPD helicase, ATP-depen 97.8 8.5E-06 2.9E-10 71.8 3.3 67 63-144 4-74 (620)
110 1yks_A Genome polyprotein [con 97.8 5E-06 1.7E-10 70.1 1.3 56 73-143 4-59 (440)
111 2ykg_A Probable ATP-dependent 97.8 1.1E-06 3.8E-11 77.3 -3.0 99 37-137 399-524 (696)
112 2z83_A Helicase/nucleoside tri 97.7 5.1E-06 1.7E-10 70.4 0.7 33 97-129 280-313 (459)
113 2d7d_A Uvrabc system protein B 97.7 1.4E-05 4.9E-10 70.8 3.6 96 39-135 448-562 (661)
114 3o8b_A HCV NS3 protease/helica 97.6 5.6E-06 1.9E-10 73.6 -0.6 102 38-143 398-532 (666)
115 4a2q_A RIG-I, retinoic acid in 97.6 1.5E-05 5.3E-10 71.6 1.9 93 37-131 632-751 (797)
116 4gl2_A Interferon-induced heli 97.6 5.6E-05 1.9E-09 66.4 4.6 92 36-130 400-519 (699)
117 2v6i_A RNA helicase; membrane, 97.5 2.6E-05 8.8E-10 65.5 2.1 52 76-142 1-52 (431)
118 1c4o_A DNA nucleotide excision 97.5 3.8E-05 1.3E-09 68.1 3.1 99 39-138 442-559 (664)
119 1wp9_A ATP-dependent RNA helic 97.4 3.6E-05 1.2E-09 63.3 1.2 96 36-132 361-478 (494)
120 3h1t_A Type I site-specific re 97.4 7.3E-05 2.5E-09 64.7 2.9 71 62-142 178-257 (590)
121 3o8b_A HCV NS3 protease/helica 97.4 1.3E-05 4.5E-10 71.2 -1.9 61 64-143 218-279 (666)
122 4a2w_A RIG-I, retinoic acid in 97.4 4.7E-05 1.6E-09 69.9 1.5 94 36-131 631-751 (936)
123 3dmq_A RNA polymerase-associat 97.3 9.5E-05 3.3E-09 68.1 2.6 107 37-143 504-627 (968)
124 3rc3_A ATP-dependent RNA helic 97.3 0.00018 6.3E-09 64.0 4.2 76 48-147 130-205 (677)
125 3rc3_A ATP-dependent RNA helic 97.2 0.00024 8.2E-09 63.2 4.4 107 39-148 324-460 (677)
126 1gm5_A RECG; helicase, replica 97.1 0.0002 6.8E-09 64.7 2.8 45 93-137 660-705 (780)
127 2xgj_A ATP-dependent RNA helic 97.1 0.00029 1E-08 65.3 3.9 37 93-129 453-499 (1010)
128 2w00_A HSDR, R.ECOR124I; ATP-b 97.0 0.00026 8.8E-09 65.8 3.0 70 62-145 271-354 (1038)
129 2v6i_A RNA helicase; membrane, 97.0 0.00026 8.7E-09 59.4 2.5 35 93-127 254-288 (431)
130 1w36_D RECD, exodeoxyribonucle 96.9 0.0015 5.3E-08 57.2 6.8 66 64-143 151-218 (608)
131 1z5z_A Helicase of the SNF2/RA 96.8 0.0004 1.4E-08 55.0 2.0 94 37-130 113-225 (271)
132 3l9o_A ATP-dependent RNA helic 96.8 0.00026 9E-09 66.2 0.7 37 93-129 551-597 (1108)
133 2xau_A PRE-mRNA-splicing facto 96.7 0.00023 8E-09 64.1 -0.6 36 93-129 390-443 (773)
134 2oca_A DAR protein, ATP-depend 96.6 0.00067 2.3E-08 57.4 2.1 90 38-127 350-453 (510)
135 2va8_A SSO2462, SKI2-type heli 96.6 0.00087 3E-08 59.3 2.5 65 66-130 326-409 (715)
136 2zj8_A DNA helicase, putative 96.6 0.00074 2.5E-08 59.9 2.0 65 66-130 308-388 (720)
137 2fwr_A DNA repair protein RAD2 96.5 0.00092 3.2E-08 55.9 2.3 93 37-129 350-454 (472)
138 3h1t_A Type I site-specific re 96.1 0.0017 5.8E-08 56.1 1.8 90 38-127 441-556 (590)
139 2p6r_A Afuhel308 helicase; pro 95.9 0.0024 8.1E-08 56.5 1.7 65 66-130 310-389 (702)
140 4a4z_A Antiviral helicase SKI2 95.7 0.0057 2E-07 56.6 3.4 27 100-126 461-489 (997)
141 1z63_A Helicase of the SNF2/RA 95.6 0.01 3.6E-07 49.8 4.5 67 62-143 37-107 (500)
142 1z63_A Helicase of the SNF2/RA 95.5 0.0063 2.2E-07 51.2 2.8 93 38-130 343-454 (500)
143 2eyq_A TRCF, transcription-rep 95.4 0.0067 2.3E-07 56.9 2.6 91 39-129 815-922 (1151)
144 3jux_A Protein translocase sub 95.0 0.026 8.9E-07 50.9 5.2 68 57-143 71-138 (822)
145 1z3i_X Similar to RAD54-like; 94.6 0.022 7.6E-07 50.0 3.7 93 38-130 418-529 (644)
146 3dmq_A RNA polymerase-associat 94.0 0.037 1.3E-06 50.9 4.0 65 62-141 153-219 (968)
147 2w00_A HSDR, R.ECOR124I; ATP-b 93.6 0.021 7.2E-07 53.1 1.6 38 90-127 666-707 (1038)
148 2gk6_A Regulator of nonsense t 93.4 0.13 4.5E-06 44.9 6.2 70 60-144 178-247 (624)
149 4b3f_X DNA-binding protein smu 93.3 0.11 3.9E-06 45.4 5.6 65 63-143 190-255 (646)
150 3mwy_W Chromo domain-containin 93.1 0.088 3E-06 47.3 4.7 94 37-130 573-685 (800)
151 3upu_A ATP-dependent DNA helic 92.7 0.11 3.8E-06 43.5 4.6 71 56-141 19-94 (459)
152 3lfu_A DNA helicase II; SF1 he 92.7 0.1 3.6E-06 45.1 4.5 68 61-143 8-76 (647)
153 3u4q_A ATP-dependent helicase/ 92.6 0.12 4.2E-06 48.7 5.0 66 62-142 10-78 (1232)
154 2wjy_A Regulator of nonsense t 92.6 0.19 6.6E-06 45.4 6.1 70 61-145 355-424 (800)
155 3e1s_A Exodeoxyribonuclease V, 91.8 0.17 5.8E-06 44.0 4.6 63 63-141 190-252 (574)
156 3mwy_W Chromo domain-containin 91.7 0.4 1.4E-05 43.1 7.2 86 4-95 181-273 (800)
157 2xzl_A ATP-dependent helicase 91.4 0.18 6E-06 45.7 4.5 70 60-144 358-427 (802)
158 1c4o_A DNA nucleotide excision 90.8 0.24 8.1E-06 43.8 4.6 67 58-144 5-76 (664)
159 1z3i_X Similar to RAD54-like; 89.7 0.27 9.4E-06 43.0 4.1 72 62-142 55-138 (644)
160 1uaa_A REP helicase, protein ( 89.3 0.21 7.2E-06 43.8 3.1 67 62-143 2-69 (673)
161 1pjr_A PCRA; DNA repair, DNA r 88.0 0.56 1.9E-05 41.6 4.9 63 61-138 10-73 (724)
162 3ec2_A DNA replication protein 80.8 1.2 4.1E-05 31.8 3.1 18 76-93 37-54 (180)
163 3co5_A Putative two-component 74.5 1.9 6.3E-05 29.8 2.5 20 74-93 24-43 (143)
164 2eyu_A Twitching motility prot 73.4 1.2 4.2E-05 34.4 1.5 20 74-93 22-41 (261)
165 3n70_A Transport activator; si 73.1 2 6.9E-05 29.7 2.4 20 74-93 21-40 (145)
166 2oap_1 GSPE-2, type II secreti 69.7 4.1 0.00014 34.8 4.0 20 74-93 257-276 (511)
167 1bg2_A Kinesin; motor protein, 66.8 2.8 9.6E-05 33.7 2.3 25 71-95 70-96 (325)
168 3nwn_A Kinesin-like protein KI 66.7 2.8 9.5E-05 34.3 2.2 24 71-94 97-122 (359)
169 2d7d_A Uvrabc system protein B 66.6 6 0.0002 34.7 4.5 64 62-144 12-80 (661)
170 3dc4_A Kinesin-like protein NO 65.3 2.8 9.6E-05 34.1 2.0 24 71-94 87-112 (344)
171 3b85_A Phosphate starvation-in 64.9 5.8 0.0002 29.5 3.6 35 60-94 5-39 (208)
172 2vvg_A Kinesin-2; motor protei 64.9 3.2 0.00011 33.8 2.3 24 71-94 82-107 (350)
173 2y65_A Kinesin, kinesin heavy 64.6 3.3 0.00011 34.0 2.3 24 71-94 77-102 (365)
174 4a14_A Kinesin, kinesin-like p 64.5 3.3 0.00011 33.6 2.3 24 71-94 76-101 (344)
175 3h4m_A Proteasome-activating n 64.5 2 6.7E-05 32.8 0.9 54 38-93 12-67 (285)
176 1t5c_A CENP-E protein, centrom 64.3 3.3 0.00011 33.7 2.2 24 71-94 70-95 (349)
177 3b6u_A Kinesin-like protein KI 64.3 3.3 0.00011 34.0 2.2 24 71-94 94-119 (372)
178 2h58_A Kinesin-like protein KI 64.2 3.4 0.00012 33.4 2.3 25 70-94 72-98 (330)
179 2zfi_A Kinesin-like protein KI 64.1 3.4 0.00012 33.8 2.3 24 71-94 82-107 (366)
180 3gbj_A KIF13B protein; kinesin 63.7 3.5 0.00012 33.6 2.2 24 71-94 85-110 (354)
181 1goj_A Kinesin, kinesin heavy 63.5 3.2 0.00011 33.8 2.1 25 71-95 73-99 (355)
182 4etp_A Kinesin-like protein KA 62.8 3.7 0.00013 34.1 2.3 26 70-95 132-159 (403)
183 3u06_A Protein claret segregat 62.0 3.8 0.00013 34.1 2.3 25 70-94 130-156 (412)
184 2wbe_C Bipolar kinesin KRP-130 61.7 3.6 0.00012 33.8 2.0 24 72-95 94-119 (373)
185 3lre_A Kinesin-like protein KI 61.7 3.7 0.00013 33.5 2.1 24 71-94 98-123 (355)
186 2nr8_A Kinesin-like protein KI 61.6 4 0.00014 33.4 2.2 24 71-94 96-121 (358)
187 2gza_A Type IV secretion syste 61.4 3.5 0.00012 33.3 1.9 20 74-93 172-191 (361)
188 1x88_A Kinesin-like protein KI 61.3 3.3 0.00011 33.8 1.7 25 71-95 81-107 (359)
189 3bfn_A Kinesin-like protein KI 61.2 3.8 0.00013 33.9 2.0 23 72-94 92-116 (388)
190 3cob_A Kinesin heavy chain-lik 61.1 3.4 0.00012 33.9 1.7 25 70-94 71-97 (369)
191 1f9v_A Kinesin-like protein KA 60.0 3.3 0.00011 33.6 1.5 24 71-94 77-102 (347)
192 1qhx_A CPT, protein (chloramph 59.7 2.6 8.9E-05 29.6 0.7 17 76-92 2-18 (178)
193 1v8k_A Kinesin-like protein KI 59.4 3.7 0.00013 34.2 1.7 24 71-94 147-172 (410)
194 2owm_A Nckin3-434, related to 59.3 4.5 0.00016 34.0 2.3 23 72-94 130-154 (443)
195 3cpe_A Terminase, DNA packagin 59.3 10 0.00035 32.6 4.6 74 63-150 164-237 (592)
196 1kgd_A CASK, peripheral plasma 59.3 2.7 9.1E-05 30.1 0.7 18 76-93 4-21 (180)
197 1ofh_A ATP-dependent HSL prote 59.2 11 0.00038 28.6 4.4 18 76-93 49-66 (310)
198 3t0q_A AGR253WP; kinesin, alph 59.1 3.4 0.00012 33.6 1.4 25 70-94 77-103 (349)
199 2heh_A KIF2C protein; kinesin, 59.0 3.9 0.00013 33.8 1.8 24 71-94 127-152 (387)
200 1p9r_A General secretion pathw 58.5 4.3 0.00015 33.7 2.0 18 76-93 166-183 (418)
201 1kht_A Adenylate kinase; phosp 58.4 3 0.0001 29.4 0.9 17 76-92 2-18 (192)
202 2rep_A Kinesin-like protein KI 58.3 4.3 0.00015 33.4 1.9 25 71-95 108-134 (376)
203 2qor_A Guanylate kinase; phosp 58.1 3 0.0001 30.4 0.9 19 74-92 9-27 (204)
204 3te6_A Regulatory protein SIR3 58.1 1.7 5.6E-05 35.0 -0.6 19 76-94 44-62 (318)
205 3nbx_X ATPase RAVA; AAA+ ATPas 58.1 11 0.00037 32.1 4.4 28 66-93 30-57 (500)
206 2pt7_A CAG-ALFA; ATPase, prote 57.7 4 0.00014 32.6 1.6 20 74-93 168-187 (330)
207 3iij_A Coilin-interacting nucl 56.8 2.6 8.9E-05 29.9 0.3 19 74-92 8-26 (180)
208 1lvg_A Guanylate kinase, GMP k 56.8 3.9 0.00013 29.8 1.3 18 76-93 3-20 (198)
209 1jbk_A CLPB protein; beta barr 56.7 3.4 0.00012 28.7 0.9 17 78-94 44-60 (195)
210 3bos_A Putative DNA replicatio 56.3 3.4 0.00012 30.1 0.9 18 76-93 51-68 (242)
211 3dnf_A ISPH, LYTB, 4-hydroxy-3 55.7 28 0.00095 27.7 6.2 74 14-87 42-123 (297)
212 1kag_A SKI, shikimate kinase I 55.7 4.6 0.00016 28.1 1.5 17 76-92 3-19 (173)
213 3vaa_A Shikimate kinase, SK; s 55.3 3.7 0.00013 29.7 1.0 19 75-93 23-41 (199)
214 4b4t_M 26S protease regulatory 55.3 3 0.0001 35.0 0.5 54 37-93 175-231 (434)
215 2j41_A Guanylate kinase; GMP, 54.7 3.5 0.00012 29.6 0.7 19 75-93 4-22 (207)
216 3cm0_A Adenylate kinase; ATP-b 54.5 2.6 8.8E-05 29.9 -0.0 17 76-92 3-19 (186)
217 3cf0_A Transitional endoplasmi 54.3 2.5 8.5E-05 33.0 -0.2 53 38-93 10-65 (301)
218 2kjq_A DNAA-related protein; s 54.2 4.9 0.00017 28.1 1.4 18 76-93 35-52 (149)
219 3lw7_A Adenylate kinase relate 54.2 4 0.00014 28.0 1.0 13 80-92 4-16 (179)
220 2p65_A Hypothetical protein PF 54.0 3.3 0.00011 28.8 0.5 18 77-94 43-60 (187)
221 3lda_A DNA repair protein RAD5 53.8 15 0.00053 30.1 4.6 27 36-62 80-106 (400)
222 2bjv_A PSP operon transcriptio 53.6 7.4 0.00025 29.3 2.5 19 75-93 27-45 (265)
223 1e9r_A Conjugal transfer prote 53.4 3.3 0.00011 33.9 0.4 20 75-94 51-70 (437)
224 3a8t_A Adenylate isopentenyltr 52.3 4.3 0.00015 32.9 1.0 15 78-92 41-55 (339)
225 3tau_A Guanylate kinase, GMP k 52.3 4.5 0.00015 29.6 1.0 18 76-93 7-24 (208)
226 2w58_A DNAI, primosome compone 51.4 7.1 0.00024 28.0 2.0 16 78-93 55-70 (202)
227 1tue_A Replication protein E1; 51.2 14 0.00047 28.0 3.6 43 49-93 28-74 (212)
228 2v54_A DTMP kinase, thymidylat 51.0 3.7 0.00013 29.4 0.4 17 76-92 3-19 (204)
229 3trf_A Shikimate kinase, SK; a 50.5 4.8 0.00017 28.4 0.9 16 77-92 5-20 (185)
230 4akg_A Glutathione S-transfera 50.0 10 0.00034 38.9 3.3 47 47-94 890-940 (2695)
231 2r44_A Uncharacterized protein 49.4 6.3 0.00021 30.8 1.5 21 73-93 42-62 (331)
232 4edh_A DTMP kinase, thymidylat 49.3 19 0.00064 26.7 4.1 61 75-150 4-66 (213)
233 4h1g_A Maltose binding protein 49.3 7.9 0.00027 34.2 2.3 25 70-94 454-480 (715)
234 3exa_A TRNA delta(2)-isopenten 49.2 5.2 0.00018 32.3 1.0 15 79-93 5-19 (322)
235 3foz_A TRNA delta(2)-isopenten 49.1 5.2 0.00018 32.2 1.0 14 80-93 13-26 (316)
236 1tev_A UMP-CMP kinase; ploop, 48.8 4.3 0.00015 28.6 0.4 17 76-92 2-18 (196)
237 2ze6_A Isopentenyl transferase 48.6 5.4 0.00019 30.3 1.0 13 80-92 4-16 (253)
238 3tr0_A Guanylate kinase, GMP k 48.4 5.6 0.00019 28.5 1.0 18 76-93 6-23 (205)
239 1ly1_A Polynucleotide kinase; 48.4 5.7 0.00019 27.6 1.0 13 80-92 5-17 (181)
240 2plr_A DTMP kinase, probable t 48.4 4.1 0.00014 29.2 0.2 17 76-92 3-19 (213)
241 3hws_A ATP-dependent CLP prote 48.2 17 0.00058 28.8 3.9 18 76-93 50-67 (363)
242 3syl_A Protein CBBX; photosynt 48.1 5.4 0.00018 30.6 0.9 16 78-93 68-83 (309)
243 1z6g_A Guanylate kinase; struc 47.9 7.1 0.00024 28.9 1.5 20 74-93 20-39 (218)
244 1zp6_A Hypothetical protein AT 47.5 4.7 0.00016 28.6 0.4 18 75-92 7-24 (191)
245 3jvv_A Twitching mobility prot 47.5 5.7 0.00019 32.2 1.0 18 76-93 122-139 (356)
246 1ry6_A Internal kinesin; kines 47.3 7.1 0.00024 31.9 1.5 20 76-95 82-103 (360)
247 2qgz_A Helicase loader, putati 47.2 9.7 0.00033 29.9 2.3 17 77-93 152-168 (308)
248 2chg_A Replication factor C sm 47.0 7.6 0.00026 27.5 1.5 16 78-93 39-54 (226)
249 1y63_A LMAJ004144AAA protein; 46.3 6.2 0.00021 28.1 0.9 17 76-92 9-25 (184)
250 2c95_A Adenylate kinase 1; tra 46.0 7.4 0.00025 27.5 1.3 19 74-92 6-24 (196)
251 1u0j_A DNA replication protein 45.7 24 0.00084 27.4 4.3 43 49-94 73-121 (267)
252 1aky_A Adenylate kinase; ATP:A 45.3 6.7 0.00023 28.7 1.0 17 76-92 3-19 (220)
253 3kb2_A SPBC2 prophage-derived 45.2 6.9 0.00024 27.0 1.0 14 79-92 3-16 (173)
254 2ewv_A Twitching motility prot 45.0 5.4 0.00019 32.4 0.5 20 74-93 133-152 (372)
255 3vkw_A Replicase large subunit 44.9 25 0.00087 29.5 4.6 44 80-144 164-207 (446)
256 3ney_A 55 kDa erythrocyte memb 44.7 6.2 0.00021 29.3 0.7 19 75-93 17-35 (197)
257 2bwj_A Adenylate kinase 5; pho 44.6 8.1 0.00028 27.4 1.3 19 74-92 9-27 (199)
258 1m7g_A Adenylylsulfate kinase; 44.0 7.4 0.00025 28.3 1.1 28 64-92 13-40 (211)
259 4eun_A Thermoresistant glucoki 43.7 7.4 0.00025 28.1 1.0 17 76-92 28-44 (200)
260 4b4t_J 26S protease regulatory 43.6 8.9 0.0003 31.8 1.6 53 38-93 143-198 (405)
261 2v1u_A Cell division control p 43.5 8.1 0.00028 30.3 1.3 18 76-93 43-60 (387)
262 1zak_A Adenylate kinase; ATP:A 43.5 8.9 0.0003 28.1 1.4 17 76-92 4-20 (222)
263 1l8q_A Chromosomal replication 43.4 8.7 0.0003 29.9 1.4 17 77-93 37-53 (324)
264 4b4t_H 26S protease regulatory 43.3 6.4 0.00022 33.4 0.6 54 37-93 203-259 (467)
265 3uk6_A RUVB-like 2; hexameric 43.1 6.8 0.00023 30.9 0.8 17 77-93 70-86 (368)
266 3a00_A Guanylate kinase, GMP k 43.0 9.3 0.00032 27.2 1.5 16 78-93 2-17 (186)
267 3crm_A TRNA delta(2)-isopenten 42.6 7.6 0.00026 31.2 1.0 14 79-92 7-20 (323)
268 3be4_A Adenylate kinase; malar 42.5 7.8 0.00027 28.4 1.0 17 76-92 4-20 (217)
269 3b9p_A CG5977-PA, isoform A; A 42.2 7.4 0.00025 29.8 0.8 52 38-93 16-70 (297)
270 2vli_A Antibiotic resistance p 42.1 8.1 0.00028 27.0 1.0 17 76-92 4-20 (183)
271 2rhm_A Putative kinase; P-loop 41.9 6.5 0.00022 27.7 0.5 16 77-92 5-20 (193)
272 1ojl_A Transcriptional regulat 41.9 12 0.00041 29.3 2.0 18 76-93 24-41 (304)
273 4gp7_A Metallophosphoesterase; 41.8 6.5 0.00022 27.8 0.4 18 76-93 8-25 (171)
274 1ak2_A Adenylate kinase isoenz 41.7 7.4 0.00025 28.9 0.7 18 75-92 14-31 (233)
275 3lnc_A Guanylate kinase, GMP k 41.5 8.7 0.0003 28.3 1.1 19 75-93 25-43 (231)
276 3v9p_A DTMP kinase, thymidylat 41.4 32 0.0011 25.8 4.3 20 74-93 22-41 (227)
277 3d3q_A TRNA delta(2)-isopenten 41.0 8.3 0.00028 31.2 1.0 14 79-92 9-22 (340)
278 1zd8_A GTP:AMP phosphotransfer 40.9 8.2 0.00028 28.4 0.9 17 76-92 6-22 (227)
279 1s96_A Guanylate kinase, GMP k 40.8 8.6 0.0003 28.7 1.0 20 74-93 13-32 (219)
280 1ex7_A Guanylate kinase; subst 40.4 10 0.00034 27.8 1.3 16 78-93 2-17 (186)
281 1nks_A Adenylate kinase; therm 40.4 8.8 0.0003 26.9 0.9 13 80-92 4-16 (194)
282 2cdn_A Adenylate kinase; phosp 40.3 9 0.00031 27.5 1.0 18 75-92 18-35 (201)
283 2ius_A DNA translocase FTSK; n 40.3 8.1 0.00028 33.1 0.8 18 76-93 166-183 (512)
284 1knq_A Gluconate kinase; ALFA/ 40.2 6.9 0.00024 27.4 0.3 17 76-92 7-23 (175)
285 1znw_A Guanylate kinase, GMP k 39.9 9.1 0.00031 27.8 1.0 21 73-93 16-36 (207)
286 2iyv_A Shikimate kinase, SK; t 39.8 11 0.00037 26.5 1.4 16 77-92 2-17 (184)
287 2wwf_A Thymidilate kinase, put 39.8 8.9 0.00031 27.5 0.9 18 75-92 8-25 (212)
288 1hqc_A RUVB; extended AAA-ATPa 39.7 11 0.00037 29.0 1.4 16 78-93 39-54 (324)
289 3nwj_A ATSK2; P loop, shikimat 39.6 12 0.00043 28.5 1.8 20 74-93 45-64 (250)
290 3vkg_A Dynein heavy chain, cyt 39.3 22 0.00077 37.1 3.9 47 47-94 873-923 (3245)
291 2o0j_A Terminase, DNA packagin 39.2 21 0.00072 29.3 3.2 69 62-144 163-231 (385)
292 2qz4_A Paraplegin; AAA+, SPG7, 39.1 9.4 0.00032 28.3 1.0 16 78-93 40-55 (262)
293 1njg_A DNA polymerase III subu 38.8 9.6 0.00033 27.2 1.0 15 79-93 47-61 (250)
294 1g8p_A Magnesium-chelatase 38 38.8 10 0.00036 29.4 1.2 17 77-93 45-61 (350)
295 2ehv_A Hypothetical protein PH 38.7 9.6 0.00033 28.0 1.0 19 75-93 28-46 (251)
296 1d2n_A N-ethylmaleimide-sensit 38.7 9.6 0.00033 28.8 1.0 16 78-93 65-80 (272)
297 1lv7_A FTSH; alpha/beta domain 38.5 9.7 0.00033 28.5 1.0 52 39-93 8-61 (257)
298 3c8u_A Fructokinase; YP_612366 38.5 8.9 0.00031 27.9 0.7 17 76-92 21-37 (208)
299 1nn5_A Similar to deoxythymidy 38.4 9.9 0.00034 27.3 1.0 17 76-92 8-24 (215)
300 3eph_A TRNA isopentenyltransfe 38.4 9.7 0.00033 31.7 1.0 14 80-93 5-18 (409)
301 2yvu_A Probable adenylyl-sulfa 38.2 8.2 0.00028 27.3 0.5 17 76-92 12-28 (186)
302 3t15_A Ribulose bisphosphate c 38.0 9.8 0.00034 29.5 0.9 16 78-93 37-52 (293)
303 2w0m_A SSO2452; RECA, SSPF, un 37.8 10 0.00035 27.3 1.0 18 76-93 22-39 (235)
304 4tmk_A Protein (thymidylate ki 37.7 48 0.0016 24.5 4.8 56 75-143 1-56 (213)
305 2bdt_A BH3686; alpha-beta prot 37.6 6.8 0.00023 27.8 -0.0 15 78-92 3-17 (189)
306 2qby_A CDC6 homolog 1, cell di 37.5 12 0.00042 29.1 1.5 17 77-93 45-61 (386)
307 3pfi_A Holliday junction ATP-d 37.2 11 0.00039 29.3 1.2 16 78-93 56-71 (338)
308 1ixz_A ATP-dependent metallopr 36.8 11 0.00037 28.2 1.0 52 37-93 10-65 (254)
309 2pez_A Bifunctional 3'-phospho 36.7 9 0.00031 26.9 0.5 17 76-92 4-20 (179)
310 3t61_A Gluconokinase; PSI-biol 36.2 11 0.00038 27.0 1.0 15 78-92 19-33 (202)
311 4ag6_A VIRB4 ATPase, type IV s 36.1 13 0.00046 29.8 1.5 18 76-93 34-51 (392)
312 2jaq_A Deoxyguanosine kinase; 36.0 11 0.00039 26.6 1.0 13 80-92 3-15 (205)
313 4eaq_A DTMP kinase, thymidylat 36.0 30 0.001 25.7 3.3 18 76-93 25-42 (229)
314 1gvn_B Zeta; postsegregational 35.9 12 0.00043 28.9 1.2 16 77-92 33-48 (287)
315 1e6c_A Shikimate kinase; phosp 35.6 15 0.0005 25.3 1.5 15 78-92 3-17 (173)
316 3a4m_A L-seryl-tRNA(SEC) kinas 35.4 9.6 0.00033 28.9 0.5 16 77-92 4-19 (260)
317 1qf9_A UMP/CMP kinase, protein 35.2 12 0.00041 26.2 1.0 14 79-92 8-21 (194)
318 2dr3_A UPF0273 protein PH0284; 35.1 12 0.0004 27.4 0.9 18 76-93 22-39 (247)
319 2qmh_A HPR kinase/phosphorylas 35.1 10 0.00035 28.5 0.6 17 76-92 33-49 (205)
320 3fb4_A Adenylate kinase; psych 34.8 11 0.00038 27.2 0.8 14 79-92 2-15 (216)
321 1um8_A ATP-dependent CLP prote 34.7 15 0.0005 29.3 1.5 17 77-93 72-88 (376)
322 3uie_A Adenylyl-sulfate kinase 34.5 10 0.00035 27.3 0.5 18 75-92 23-40 (200)
323 2r62_A Cell division protease 34.3 9.6 0.00033 28.6 0.3 16 78-93 45-60 (268)
324 3eie_A Vacuolar protein sortin 34.2 12 0.00041 29.3 0.9 50 38-93 13-67 (322)
325 2cvh_A DNA repair and recombin 34.0 12 0.00043 26.8 0.9 17 77-93 20-36 (220)
326 3dl0_A Adenylate kinase; phosp 33.9 12 0.0004 27.1 0.8 14 79-92 2-15 (216)
327 1xwi_A SKD1 protein; VPS4B, AA 33.8 12 0.00043 29.4 0.9 50 38-93 7-61 (322)
328 3tmk_A Thymidylate kinase; pho 33.7 76 0.0026 23.5 5.3 58 76-150 4-62 (216)
329 1ye8_A Protein THEP1, hypothet 33.6 12 0.00041 26.8 0.8 14 80-93 3-16 (178)
330 1ukz_A Uridylate kinase; trans 33.4 13 0.00046 26.5 1.0 14 79-92 17-30 (203)
331 4fcw_A Chaperone protein CLPB; 33.4 13 0.00044 28.4 0.9 15 79-93 49-63 (311)
332 1f2t_A RAD50 ABC-ATPase; DNA d 33.1 14 0.00047 25.7 1.0 14 80-93 26-39 (149)
333 4b4t_I 26S protease regulatory 33.0 8.4 0.00029 32.4 -0.2 54 37-93 176-232 (437)
334 2zts_A Putative uncharacterize 33.0 13 0.00046 27.1 1.0 17 77-93 30-46 (251)
335 3kta_A Chromosome segregation 32.9 14 0.00047 25.9 1.0 14 80-93 29-42 (182)
336 2c9o_A RUVB-like 1; hexameric 32.8 12 0.00043 30.9 0.8 17 77-93 63-79 (456)
337 3qf7_A RAD50; ABC-ATPase, ATPa 32.8 10 0.00036 30.5 0.3 14 80-93 26-39 (365)
338 2pt5_A Shikimate kinase, SK; a 32.7 13 0.00044 25.6 0.8 14 79-92 2-15 (168)
339 2qp9_X Vacuolar protein sortin 32.7 16 0.00053 29.2 1.3 51 37-93 45-100 (355)
340 3tif_A Uncharacterized ABC tra 32.6 14 0.00047 27.8 1.0 19 75-93 29-47 (235)
341 2r2a_A Uncharacterized protein 32.6 14 0.00046 27.3 0.9 16 79-94 7-22 (199)
342 2bbw_A Adenylate kinase 4, AK4 32.5 14 0.00048 27.5 1.0 18 76-93 26-43 (246)
343 2i3b_A HCR-ntpase, human cance 32.5 17 0.00059 26.4 1.4 16 77-92 1-16 (189)
344 2pbr_A DTMP kinase, thymidylat 32.3 14 0.00049 25.8 1.0 13 80-92 3-15 (195)
345 1fnn_A CDC6P, cell division co 32.0 14 0.00047 29.1 0.9 15 79-93 46-60 (389)
346 3asz_A Uridine kinase; cytidin 32.0 12 0.0004 27.0 0.5 16 77-92 6-21 (211)
347 2z0h_A DTMP kinase, thymidylat 31.9 15 0.0005 25.9 1.0 13 80-92 3-15 (197)
348 1e4v_A Adenylate kinase; trans 31.7 13 0.00046 26.9 0.7 14 79-92 2-15 (214)
349 1via_A Shikimate kinase; struc 31.7 17 0.00058 25.3 1.3 14 79-92 6-19 (175)
350 2x8a_A Nuclear valosin-contain 31.6 14 0.00048 28.4 0.9 51 38-93 5-60 (274)
351 2z43_A DNA repair and recombin 31.3 32 0.0011 26.9 2.9 25 70-94 95-124 (324)
352 1iy2_A ATP-dependent metallopr 31.1 15 0.00052 27.9 1.0 51 38-93 35-89 (278)
353 2if2_A Dephospho-COA kinase; a 30.7 16 0.00053 26.1 1.0 13 80-92 4-16 (204)
354 1cke_A CK, MSSA, protein (cyti 30.7 16 0.00054 26.5 1.0 15 78-92 6-20 (227)
355 1n0w_A DNA repair protein RAD5 30.4 16 0.00053 26.7 0.9 19 76-94 23-41 (243)
356 2qby_B CDC6 homolog 3, cell di 30.0 16 0.00055 28.7 1.0 17 78-94 46-62 (384)
357 1sxj_D Activator 1 41 kDa subu 29.5 27 0.00092 27.0 2.2 16 78-93 59-74 (353)
358 3lv8_A DTMP kinase, thymidylat 29.4 42 0.0014 25.3 3.3 56 74-142 24-79 (236)
359 2cbz_A Multidrug resistance-as 29.4 17 0.00057 27.4 1.0 19 75-93 29-47 (237)
360 4a74_A DNA repair and recombin 29.3 13 0.00046 26.8 0.4 19 76-94 24-42 (231)
361 1sgw_A Putative ABC transporte 29.3 21 0.00072 26.5 1.5 19 75-93 33-51 (214)
362 4b4t_L 26S protease subunit RP 29.1 16 0.00056 30.5 0.9 54 37-93 175-231 (437)
363 4b4t_K 26S protease regulatory 28.9 16 0.00056 30.4 0.9 16 78-93 207-222 (428)
364 3d8b_A Fidgetin-like protein 1 28.8 17 0.00057 29.0 0.9 17 77-93 117-133 (357)
365 2qt1_A Nicotinamide riboside k 28.8 14 0.00049 26.5 0.5 18 75-92 19-36 (207)
366 2p5t_B PEZT; postsegregational 28.7 13 0.00046 27.9 0.3 16 77-92 32-47 (253)
367 3vfd_A Spastin; ATPase, microt 28.6 16 0.00055 29.3 0.8 17 77-93 148-164 (389)
368 3auy_A DNA double-strand break 28.2 18 0.00061 29.0 1.0 14 80-93 28-41 (371)
369 1zuh_A Shikimate kinase; alpha 28.2 17 0.00058 25.1 0.8 15 78-92 8-22 (168)
370 2xb4_A Adenylate kinase; ATP-b 28.2 18 0.00063 26.5 1.0 13 80-92 3-15 (223)
371 2pze_A Cystic fibrosis transme 28.1 18 0.00063 27.0 1.0 19 75-93 32-50 (229)
372 3f9v_A Minichromosome maintena 27.7 21 0.00071 30.9 1.3 15 79-93 329-343 (595)
373 2pcj_A ABC transporter, lipopr 27.6 19 0.00064 26.8 0.9 19 75-93 28-46 (224)
374 1in4_A RUVB, holliday junction 27.6 20 0.00068 28.2 1.1 16 78-93 52-67 (334)
375 1gtv_A TMK, thymidylate kinase 27.5 11 0.00037 27.1 -0.4 13 80-92 3-15 (214)
376 2iut_A DNA translocase FTSK; n 27.5 18 0.00061 31.5 0.9 17 77-93 214-230 (574)
377 1g6h_A High-affinity branched- 27.3 19 0.00065 27.4 1.0 19 75-93 31-49 (257)
378 3tlx_A Adenylate kinase 2; str 27.3 19 0.00064 27.0 0.9 17 76-92 28-44 (243)
379 1cr0_A DNA primase/helicase; R 27.1 19 0.00065 27.5 0.9 19 76-94 34-52 (296)
380 2ghi_A Transport protein; mult 27.1 19 0.00066 27.5 1.0 19 75-93 44-62 (260)
381 2vp4_A Deoxynucleoside kinase; 27.1 16 0.00055 27.0 0.5 18 76-93 19-36 (230)
382 1rj9_A FTSY, signal recognitio 27.0 19 0.00064 28.3 0.9 18 76-93 101-118 (304)
383 1uf9_A TT1252 protein; P-loop, 27.0 20 0.00067 25.3 0.9 14 79-92 10-23 (203)
384 1jjv_A Dephospho-COA kinase; P 26.9 20 0.00068 25.6 1.0 13 80-92 5-17 (206)
385 1v5w_A DMC1, meiotic recombina 26.8 37 0.0013 26.9 2.6 25 70-94 110-139 (343)
386 2px0_A Flagellar biosynthesis 26.8 19 0.00065 28.1 0.9 18 77-94 105-122 (296)
387 4a1f_A DNAB helicase, replicat 26.7 51 0.0017 26.4 3.4 19 77-95 46-64 (338)
388 3sr0_A Adenylate kinase; phosp 26.5 19 0.00065 26.6 0.8 21 127-147 83-103 (206)
389 3u4q_B ATP-dependent helicase/ 26.3 17 0.00057 33.9 0.5 13 81-93 5-17 (1166)
390 1nlf_A Regulatory protein REPA 26.2 20 0.00068 27.2 0.9 22 74-95 27-48 (279)
391 1ji0_A ABC transporter; ATP bi 26.2 21 0.00071 26.9 1.0 19 75-93 30-48 (240)
392 2v9p_A Replication protein E1; 26.1 21 0.00071 28.3 1.0 19 75-93 124-142 (305)
393 2dyk_A GTP-binding protein; GT 25.9 22 0.00075 23.7 1.0 15 79-93 3-17 (161)
394 2ff7_A Alpha-hemolysin translo 25.9 21 0.00072 27.0 1.0 19 75-93 33-51 (247)
395 3gfo_A Cobalt import ATP-bindi 25.7 21 0.00071 27.7 0.9 19 75-93 32-50 (275)
396 4e22_A Cytidylate kinase; P-lo 25.7 21 0.00072 26.8 0.9 17 76-92 26-42 (252)
397 3pxg_A Negative regulator of g 25.6 22 0.00075 29.5 1.1 16 78-93 202-217 (468)
398 1g41_A Heat shock protein HSLU 25.5 67 0.0023 26.8 4.1 17 77-93 50-66 (444)
399 2orw_A Thymidine kinase; TMTK, 25.4 19 0.00066 25.8 0.6 18 77-94 3-20 (184)
400 4g1u_C Hemin import ATP-bindin 25.4 22 0.00074 27.3 1.0 19 75-93 35-53 (266)
401 1rz3_A Hypothetical protein rb 25.3 22 0.00076 25.5 1.0 17 77-93 22-38 (201)
402 2h92_A Cytidylate kinase; ross 25.3 27 0.00092 25.1 1.4 16 77-92 3-18 (219)
403 1b0u_A Histidine permease; ABC 25.2 22 0.00075 27.2 1.0 19 75-93 30-48 (262)
404 1vht_A Dephospho-COA kinase; s 25.1 23 0.00077 25.6 1.0 15 78-92 5-19 (218)
405 1sxj_E Activator 1 40 kDa subu 25.1 27 0.00093 27.1 1.5 41 41-93 12-52 (354)
406 3k1j_A LON protease, ATP-depen 25.0 31 0.0011 29.7 1.9 21 73-93 56-76 (604)
407 3b9q_A Chloroplast SRP recepto 24.8 19 0.00063 28.3 0.5 17 77-93 100-116 (302)
408 1mv5_A LMRA, multidrug resista 24.8 18 0.00063 27.2 0.4 19 75-93 26-44 (243)
409 1jg5_A GTP cyclohydrolase I fe 24.7 36 0.0012 21.7 1.7 30 46-95 50-79 (83)
410 2ce2_X GTPase HRAS; signaling 24.6 24 0.00081 23.4 1.0 15 79-93 5-19 (166)
411 2qi9_C Vitamin B12 import ATP- 24.6 23 0.00079 26.9 1.0 19 75-93 24-42 (249)
412 2nq2_C Hypothetical ABC transp 24.6 23 0.0008 26.9 1.0 19 75-93 29-47 (253)
413 1ltq_A Polynucleotide kinase; 24.6 23 0.00079 27.0 1.0 13 80-92 5-17 (301)
414 3szu_A ISPH, 4-hydroxy-3-methy 24.5 1.5E+02 0.0051 23.8 5.8 125 14-148 53-200 (328)
415 2z4s_A Chromosomal replication 24.5 27 0.00092 28.8 1.4 17 77-93 130-146 (440)
416 2ged_A SR-beta, signal recogni 24.4 24 0.00082 24.5 1.0 16 78-93 49-64 (193)
417 2yz2_A Putative ABC transporte 24.4 23 0.0008 27.1 1.0 19 75-93 31-49 (266)
418 1w36_B RECB, exodeoxyribonucle 24.2 42 0.0014 31.4 2.8 60 75-143 15-82 (1180)
419 1pui_A ENGB, probable GTP-bind 24.1 19 0.00066 25.5 0.4 19 75-93 24-42 (210)
420 3m6a_A ATP-dependent protease 24.0 23 0.00078 30.2 0.9 18 76-93 107-124 (543)
421 1xjc_A MOBB protein homolog; s 24.0 25 0.00084 25.3 1.0 14 80-93 7-20 (169)
422 2zan_A Vacuolar protein sortin 24.0 23 0.00079 29.2 0.9 53 37-93 128-183 (444)
423 1z2a_A RAS-related protein RAB 23.9 25 0.00086 23.5 1.0 15 79-93 7-21 (168)
424 1vpl_A ABC transporter, ATP-bi 23.9 24 0.00083 26.9 1.0 19 75-93 39-57 (256)
425 2d2e_A SUFC protein; ABC-ATPas 23.8 24 0.00083 26.6 1.0 19 75-93 27-45 (250)
426 2olj_A Amino acid ABC transpor 23.8 24 0.00083 27.1 1.0 19 75-93 48-66 (263)
427 2ihy_A ABC transporter, ATP-bi 23.6 25 0.00084 27.3 1.0 19 75-93 45-63 (279)
428 2zu0_C Probable ATP-dependent 23.6 25 0.00084 27.0 1.0 19 75-93 44-62 (267)
429 2zpa_A Uncharacterized protein 23.6 32 0.0011 30.4 1.8 70 62-150 175-246 (671)
430 3qkt_A DNA double-strand break 23.6 25 0.00084 27.8 1.0 13 81-93 27-39 (339)
431 3umf_A Adenylate kinase; rossm 23.5 25 0.00085 26.3 0.9 15 78-92 30-44 (217)
432 4akg_A Glutathione S-transfera 23.5 24 0.00082 36.3 1.1 21 74-94 1264-1284(2695)
433 2ixe_A Antigen peptide transpo 23.5 25 0.00085 27.0 1.0 19 75-93 43-61 (271)
434 3bh0_A DNAB-like replicative h 23.4 14 0.00049 28.9 -0.5 25 70-94 57-85 (315)
435 3vkg_A Dynein heavy chain, cyt 23.2 31 0.0011 36.1 1.8 19 74-92 1301-1319(3245)
436 2ocp_A DGK, deoxyguanosine kin 22.9 21 0.00073 26.4 0.5 16 77-92 2-17 (241)
437 1odf_A YGR205W, hypothetical 3 22.8 26 0.0009 27.3 1.0 15 79-93 33-47 (290)
438 1iqp_A RFCS; clamp loader, ext 22.7 26 0.0009 26.6 1.0 15 79-93 48-62 (327)
439 1np6_A Molybdopterin-guanine d 22.7 27 0.00092 25.0 1.0 14 80-93 9-22 (174)
440 2chq_A Replication factor C sm 22.7 27 0.00092 26.4 1.0 40 41-93 15-54 (319)
441 1ky3_A GTP-binding protein YPT 22.7 27 0.00093 23.7 1.0 15 79-93 10-24 (182)
442 1z0j_A RAB-22, RAS-related pro 22.4 28 0.00096 23.3 1.0 15 79-93 8-22 (170)
443 3qks_A DNA double-strand break 22.3 28 0.00095 25.3 1.0 14 80-93 26-39 (203)
444 1ek0_A Protein (GTP-binding pr 22.1 29 0.00098 23.2 1.0 15 79-93 5-19 (170)
445 1g16_A RAS-related protein SEC 22.1 28 0.00097 23.3 1.0 15 79-93 5-19 (170)
446 1r6b_X CLPA protein; AAA+, N-t 22.1 27 0.00093 30.7 1.0 57 35-91 436-502 (758)
447 3pqc_A Probable GTP-binding pr 22.0 29 0.00097 23.9 1.0 15 79-93 25-39 (195)
448 1e69_A Chromosome segregation 22.0 33 0.0011 26.7 1.5 14 80-93 27-40 (322)
449 3pxi_A Negative regulator of g 22.0 28 0.00096 30.7 1.1 17 77-93 201-217 (758)
450 1u8z_A RAS-related protein RAL 22.0 29 0.00099 23.1 1.0 15 79-93 6-20 (168)
451 2ahq_A Sigma-54, RNA polymeras 21.9 44 0.0015 20.9 1.7 51 1-62 4-54 (76)
452 1sxj_C Activator 1 40 kDa subu 21.8 41 0.0014 26.2 2.0 15 79-93 48-62 (340)
453 1p5z_B DCK, deoxycytidine kina 21.7 23 0.0008 26.6 0.5 18 75-92 22-39 (263)
454 1svi_A GTP-binding protein YSX 21.7 29 0.001 24.1 1.0 16 78-93 24-39 (195)
455 1jr3_A DNA polymerase III subu 21.6 28 0.00097 27.1 1.0 14 80-93 41-54 (373)
456 3dm5_A SRP54, signal recogniti 21.6 63 0.0022 27.0 3.2 17 79-95 102-118 (443)
457 1kao_A RAP2A; GTP-binding prot 21.5 30 0.001 22.9 1.0 15 79-93 5-19 (167)
458 2onk_A Molybdate/tungstate ABC 21.5 29 0.001 26.1 1.0 14 80-93 27-40 (240)
459 1nij_A Hypothetical protein YJ 21.4 25 0.00086 27.5 0.6 14 80-93 7-20 (318)
460 1ypw_A Transitional endoplasmi 21.3 20 0.00068 32.2 0.0 73 20-92 454-526 (806)
461 2f1r_A Molybdopterin-guanine d 21.3 15 0.00053 26.3 -0.6 14 80-93 5-18 (171)
462 2erx_A GTP-binding protein DI- 21.3 31 0.001 23.1 1.0 15 79-93 5-19 (172)
463 1htw_A HI0065; nucleotide-bind 21.1 25 0.00085 24.7 0.5 19 75-93 31-49 (158)
464 2ce7_A Cell division protein F 21.1 28 0.00097 29.3 0.9 53 38-93 11-65 (476)
465 1c1y_A RAS-related protein RAP 20.9 31 0.0011 23.0 1.0 15 79-93 5-19 (167)
466 3hu3_A Transitional endoplasmi 20.9 29 0.00098 29.2 0.9 16 78-93 239-254 (489)
467 2f9l_A RAB11B, member RAS onco 20.9 31 0.0011 24.3 1.0 15 79-93 7-21 (199)
468 1z06_A RAS-related protein RAB 20.8 20 0.0007 24.9 -0.0 15 78-92 21-35 (189)
469 1wms_A RAB-9, RAB9, RAS-relate 20.8 31 0.0011 23.3 1.0 15 79-93 9-23 (177)
470 3nh6_A ATP-binding cassette SU 20.7 21 0.00071 28.2 -0.0 19 75-93 78-96 (306)
471 2r6a_A DNAB helicase, replicat 20.6 18 0.00062 29.9 -0.4 25 70-94 192-220 (454)
472 1nrj_B SR-beta, signal recogni 20.6 32 0.0011 24.5 1.0 16 78-93 13-28 (218)
473 2jeo_A Uridine-cytidine kinase 20.5 31 0.0011 25.6 1.0 18 76-93 24-41 (245)
474 2fu5_C RAS-related protein RAB 20.5 36 0.0012 23.3 1.2 16 79-94 10-25 (183)
475 1oix_A RAS-related protein RAB 20.2 32 0.0011 24.2 1.0 14 80-93 32-45 (191)
476 3pvs_A Replication-associated 20.2 31 0.0011 28.6 1.0 15 79-93 52-66 (447)
477 2bbs_A Cystic fibrosis transme 20.2 31 0.0011 26.9 0.9 19 75-93 62-80 (290)
478 1sxj_A Activator 1 95 kDa subu 20.2 31 0.0011 28.9 1.0 16 78-93 78-93 (516)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.82 E-value=6.2e-20 Score=143.44 Aligned_cols=123 Identities=45% Similarity=0.687 Sum_probs=105.0
Q ss_pred cCCHHHHHHHHhhcCcEEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccc
Q psy7691 13 RLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~ 92 (165)
.+++++++.+++.+.+.+.|.+.|.|+..|+++++++.+.++|.+.||..|+++|.++++.++.|.|++++++||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL 81 (242)
T ss_dssp ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCChhHHHHhhccCCC-CCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGR-CASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r-~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
+|+ +| .++++.+... ....+..+++++|+ ++++.|+.+.+...
T Consensus 82 ~~~---l~-----~l~~l~~~~~~~~~~~~~~lil~Pt-~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 82 SYL---LP-----AIVHINHQPFLERGDGPICLVLAPT-RELAQQVQQVAAEY 125 (242)
T ss_dssp HHH---HH-----HHHHHHTSCCCCTTCCCSEEEECSS-HHHHHHHHHHHHHH
T ss_pred HHH---HH-----HHHHHHhccccccCCCCEEEEEeCc-HHHHHHHHHHHHHH
Confidence 998 88 6776644322 12346678899999 88888887777653
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.78 E-value=6.9e-19 Score=148.55 Aligned_cols=114 Identities=25% Similarity=0.431 Sum_probs=98.9
Q ss_pred hhcCcEEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCCh
Q psy7691 24 QKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSS 103 (165)
Q Consensus 24 ~~~~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~ 103 (165)
.+..+.+.|.+.|.|+..|+++++++.++++|.++||..||++|.+|||.++.|+|++++|+||||||++|+ +|
T Consensus 40 ~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~---lp--- 113 (434)
T 2db3_A 40 NNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFL---LP--- 113 (434)
T ss_dssp GGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH---HH---
T ss_pred cCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHH---HH---
Confidence 455788899999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred hHHHHhhccCCC-CCCCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 104 EDYIHRIGRTGR-CASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 104 ~~~i~r~gr~~r-~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
.++++-.... ....+..+++++|+ ++++.|+.+.+.....
T Consensus 114 --il~~l~~~~~~~~~~~~~~lil~Pt-reLa~Q~~~~~~~~~~ 154 (434)
T 2db3_A 114 --ILSKLLEDPHELELGRPQVVIVSPT-RELAIQIFNEARKFAF 154 (434)
T ss_dssp --HHHHHHHSCCCCCTTCCSEEEECSS-HHHHHHHHHHHHHHTT
T ss_pred --HHHHHHhcccccccCCccEEEEecC-HHHHHHHHHHHHHHhc
Confidence 7776644322 23456789999999 9999999888876543
No 3
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=134.81 Aligned_cols=118 Identities=31% Similarity=0.515 Sum_probs=105.0
Q ss_pred HHHHHHHhhcCcEEecCCCCCCccccccC----CCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccc
Q psy7691 17 SEVEAFRQKKEITVKGNNIPCPTQELTEG----CFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 17 ~~~~~~~~~~~i~~~~~~~p~~i~~f~~l----~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~ 92 (165)
.+++.+|+++++.+.+.+.|.|+..|+++ ++++.++++|.+.||..|+++|.++++.++.|+|++++++||+|||+
T Consensus 2 ~~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~ 81 (245)
T 3dkp_A 2 MKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTL 81 (245)
T ss_dssp HHHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHH
T ss_pred hhHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHH
Confidence 36889999999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
+|+ +| .++++.+. ...+..+++++|+ ++++.|+.+.+.....
T Consensus 82 ~~~---l~-----~l~~l~~~---~~~~~~~lil~Pt-~~L~~q~~~~~~~~~~ 123 (245)
T 3dkp_A 82 AFS---IP-----ILMQLKQP---ANKGFRALIISPT-RELASQIHRELIKISE 123 (245)
T ss_dssp HHH---HH-----HHHHHCSC---CSSSCCEEEECSS-HHHHHHHHHHHHHHTT
T ss_pred HHH---HH-----HHHHHhhc---ccCCceEEEEeCC-HHHHHHHHHHHHHHhc
Confidence 988 88 77777432 2356678999999 9999999888877544
No 4
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=131.04 Aligned_cols=109 Identities=19% Similarity=0.342 Sum_probs=92.3
Q ss_pred cCcEEecCCCCCC---ccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcC--CCeeeecccCCcccceeeecCCC
Q psy7691 26 KEITVKGNNIPCP---TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLAVINFDYP 100 (165)
Q Consensus 26 ~~i~~~~~~~p~~---i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G--~di~~~a~tgsGKt~~~~~~~lP 100 (165)
+.+.+.+.+.+.| +..|+++++++.++++|..+||..||++|.+++|.++.| +|++++|+||||||++|+ +|
T Consensus 75 ~~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~---lp 151 (300)
T 3fmo_B 75 NQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV---LA 151 (300)
T ss_dssp SCEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHH---HH
T ss_pred ccceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHH---HH
Confidence 3455666665554 678999999999999999999999999999999999998 999999999999999998 88
Q ss_pred CChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCC
Q psy7691 101 NSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQP 147 (165)
Q Consensus 101 ~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~ 147 (165)
.++++... ..++.+++++|+ ++++.|+.+.+......
T Consensus 152 -----~l~~l~~~----~~~~~~lil~Pt-reLa~Q~~~~~~~l~~~ 188 (300)
T 3fmo_B 152 -----MLSQVEPA----NKYPQCLCLSPT-YELALQTGKVIEQMGKF 188 (300)
T ss_dssp -----HHHHCCTT----SCSCCEEEECSS-HHHHHHHHHHHHHHTTT
T ss_pred -----HHHhhhcc----CCCceEEEEcCc-HHHHHHHHHHHHHHHhh
Confidence 88887543 345678899999 99999998888876543
No 5
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=121.61 Aligned_cols=118 Identities=25% Similarity=0.336 Sum_probs=96.8
Q ss_pred CHHHHHHHHhhcCcEEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCccccee
Q psy7691 15 SESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~ 94 (165)
++++++.+++++.. ..+.++..|+++++++.+.+.|.+.||..|+++|.++++.++.|.|++++++||+|||+++
T Consensus 5 ~~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 5 ERESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cHhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 45677777777663 2245678999999999999999999999999999999999999999999999999999998
Q ss_pred eecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 95 INFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 95 ~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
+ +| .++++.+.......+..+++++|+ ++++.|+.+.+.....
T Consensus 80 ~---~~-----~l~~l~~~~~~~~~~~~~lil~Pt-~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 80 L---VP-----VLEALYRLQWTSTDGLGVLIISPT-RELAYQTFEVLRKVGK 122 (236)
T ss_dssp H---HH-----HHHHHHHTTCCGGGCCCEEEECSS-HHHHHHHHHHHHHHTT
T ss_pred H---HH-----HHHHHHhhcccccCCceEEEEeCC-HHHHHHHHHHHHHHhC
Confidence 8 78 666654432223456678999999 8999998888877554
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=129.60 Aligned_cols=109 Identities=24% Similarity=0.373 Sum_probs=91.3
Q ss_pred CcEEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHH
Q psy7691 27 EITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDY 106 (165)
Q Consensus 27 ~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~ 106 (165)
.+.+.|.++|.++..|+++++++.+.++|...||..|+++|.+++|.++.|.|++++++||+|||++|+ +| .
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~---~~-----~ 73 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFL---LP-----I 73 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH---HH-----H
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHH---HH-----H
Confidence 466789999999999999999999999999999999999999999999999999999999999999988 77 5
Q ss_pred HHhhccC------------CCC--CCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 107 IHRIGRT------------GRC--ASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 107 i~r~gr~------------~r~--~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
++++-.. ++. ...+..+++++|+ ++++.|+.+.+...
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt-~~L~~q~~~~~~~~ 124 (417)
T 2i4i_A 74 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPT-RELAVQIYEEARKF 124 (417)
T ss_dssp HHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhhccccccccccccCCccEEEECCc-HHHHHHHHHHHHHH
Confidence 5544211 111 1234678999999 89999888877653
No 7
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.63 E-value=1.5e-16 Score=124.67 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=93.3
Q ss_pred hhcCcEEecCCCCC--CccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCC
Q psy7691 24 QKKEITVKGNNIPC--PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPN 101 (165)
Q Consensus 24 ~~~~i~~~~~~~p~--~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~ 101 (165)
.+..+.+.+.+.|. ++..|+++++++.++++|...||..|+++|.++++.++.|.|++++++||+|||++++ +|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~---~~- 80 (253)
T 1wrb_A 5 DSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFL---IP- 80 (253)
T ss_dssp CCCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH---HH-
T ss_pred hhCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH---HH-
Confidence 34567778888887 8999999999999999999999999999999999999999999999999999999988 78
Q ss_pred ChhHHHHhhccCCC-----CCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 102 SSEDYIHRIGRTGR-----CASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 102 ~~~~~i~r~gr~~r-----~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
.++++..... ....+..+++++|+ ++++.|+.+.+...
T Consensus 81 ----~l~~l~~~~~~~~~~~~~~~~~~lil~Pt-~~L~~q~~~~~~~~ 123 (253)
T 1wrb_A 81 ----IINHLVCQDLNQQRYSKTAYPKCLILAPT-RELAIQILSESQKF 123 (253)
T ss_dssp ----HHHHHHTTCC------CCBCCSEEEECSS-HHHHHHHHHHHHHH
T ss_pred ----HHHHHHhhccccccccccCCceEEEEECC-HHHHHHHHHHHHHH
Confidence 6666532211 12345678999999 88999888877664
No 8
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.62 E-value=5.4e-16 Score=119.55 Aligned_cols=104 Identities=31% Similarity=0.447 Sum_probs=87.0
Q ss_pred cCCCCCCcccccc-CCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhh
Q psy7691 32 GNNIPCPTQELTE-GCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRI 110 (165)
Q Consensus 32 ~~~~p~~i~~f~~-l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~ 110 (165)
+...|+|+..|++ +++++.++++|.+.||..|+++|.++++.++.|.|++++++||+|||++|+ +| .++++
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~---l~-----~~~~l 82 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL---MP-----GFIHL 82 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH---HH-----HHHHH
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH---HH-----HHHHH
Confidence 4668999999999 799999999999999999999999999999999999999999999999988 78 66655
Q ss_pred ccC--CCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 111 GRT--GRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 111 gr~--~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
... .+....+..+++++|+ ++++.|+.+.+...
T Consensus 83 ~~~~~~~~~~~~~~~lil~Pt-~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 83 DSQPISREQRNGPGMLVLTPT-RELALHVEAECSKY 117 (228)
T ss_dssp C---------CCCSEEEECSS-HHHHHHHHHHHHHH
T ss_pred HhccchhhccCCCcEEEEeCC-HHHHHHHHHHHHHh
Confidence 322 1222456678999999 99999998888774
No 9
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.62 E-value=1.3e-15 Score=117.97 Aligned_cols=102 Identities=22% Similarity=0.361 Sum_probs=83.0
Q ss_pred cCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhc
Q psy7691 32 GNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIG 111 (165)
Q Consensus 32 ~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~g 111 (165)
++..|.+...|+++++++.+.++|.+.||..|+++|.++++.++.|.|++++++||+|||++|. +| .++++.
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~---l~-----~l~~l~ 87 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFS---TI-----ALDSLV 87 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH---HH-----HHHHCC
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH---HH-----HHHHHH
Confidence 5666778889999999999999999999999999999999999999999999999999999988 77 777764
Q ss_pred cCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 112 RTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 112 r~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
+. ..+..+++++|+ ++++.|+.+.+.....
T Consensus 88 ~~----~~~~~~lil~Pt-~~L~~q~~~~~~~~~~ 117 (230)
T 2oxc_A 88 LE----NLSTQILILAPT-REIAVQIHSVITAIGI 117 (230)
T ss_dssp TT----SCSCCEEEECSS-HHHHHHHHHHHHHHTT
T ss_pred hc----CCCceEEEEeCC-HHHHHHHHHHHHHHhc
Confidence 32 235678999999 8999999888877544
No 10
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.62 E-value=8e-16 Score=119.76 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=85.3
Q ss_pred EEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHH
Q psy7691 29 TVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIH 108 (165)
Q Consensus 29 ~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~ 108 (165)
.+...+.++++..|+++++++.+.++|.+.||..|+++|.++++.++.|.|++++++||+|||++|+ +| .++
T Consensus 19 ~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~---l~-----~l~ 90 (237)
T 3bor_A 19 GVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA---IS-----ILQ 90 (237)
T ss_dssp --------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH---HH-----HHH
T ss_pred CcccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH---HH-----HHH
Confidence 3445667888999999999999999999999999999999999999999999999999999999988 77 777
Q ss_pred hhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 109 RIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 109 r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
++.+. ..+..+++++|+ ++++.|+.+.+.....
T Consensus 91 ~l~~~----~~~~~~lil~Pt-~~L~~q~~~~~~~~~~ 123 (237)
T 3bor_A 91 QLEIE----FKETQALVLAPT-RELAQQIQKVILALGD 123 (237)
T ss_dssp HCCTT----SCSCCEEEECSS-HHHHHHHHHHHHHHTT
T ss_pred HHHhc----CCCceEEEEECc-HHHHHHHHHHHHHHhh
Confidence 76432 245578899999 8999999888876543
No 11
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.60 E-value=3.3e-15 Score=114.59 Aligned_cols=101 Identities=24% Similarity=0.342 Sum_probs=87.5
Q ss_pred cCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhc
Q psy7691 32 GNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIG 111 (165)
Q Consensus 32 ~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~g 111 (165)
..+.++++..|+++++++.+.+.|.+.||..|+++|.++++.++.|.|++++++||+|||+++. +| .++++.
T Consensus 6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~---~~-----~l~~l~ 77 (224)
T 1qde_A 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS---IA-----ALQRID 77 (224)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH---HH-----HHHHCC
T ss_pred ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHH---HH-----HHHHHh
Confidence 3556788899999999999999999999999999999999999999999999999999999887 77 777774
Q ss_pred cCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 112 RTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 112 r~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
.. ..+..+++++|+ ++++.|+.+.+....
T Consensus 78 ~~----~~~~~~lil~Pt-~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 78 TS----VKAPQALMLAPT-RELALQIQKVVMALA 106 (224)
T ss_dssp TT----CCSCCEEEECSS-HHHHHHHHHHHHHHT
T ss_pred cc----CCCceEEEEECC-HHHHHHHHHHHHHHh
Confidence 32 345678899999 888888888777643
No 12
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.59 E-value=5.6e-15 Score=111.77 Aligned_cols=95 Identities=27% Similarity=0.495 Sum_probs=82.6
Q ss_pred cccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCC
Q psy7691 40 QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASS 119 (165)
Q Consensus 40 ~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~ 119 (165)
..|+++++++.++++|.+.||..|+++|.++++.++.|+|++++++||+|||++++ +| .++++... ..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~---~~-----~~~~~~~~----~~ 70 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYL---IP-----LLERLDLK----KD 70 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHH---HH-----HHHHCCTT----SC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHH---HH-----HHHHhccc----CC
Confidence 47999999999999999999999999999999999999999999999999999888 77 77776432 34
Q ss_pred CceEEEECCCcHHHHHHHHHHHHhcCCC
Q psy7691 120 GTAYTFFTPNNGKQAKELIAVLTEASQP 147 (165)
Q Consensus 120 g~~~~~~~p~~~~~~~~i~~~l~~~~~~ 147 (165)
+..+++++|+ ++++.|+.+.+......
T Consensus 71 ~~~~lil~Pt-~~L~~q~~~~~~~~~~~ 97 (206)
T 1vec_A 71 NIQAMVIVPT-RELALQVSQICIQVSKH 97 (206)
T ss_dssp SCCEEEECSC-HHHHHHHHHHHHHHTTT
T ss_pred CeeEEEEeCc-HHHHHHHHHHHHHHHhh
Confidence 5678999999 89999988888765543
No 13
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.57 E-value=3.7e-15 Score=114.34 Aligned_cols=96 Identities=27% Similarity=0.381 Sum_probs=81.7
Q ss_pred CccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCC
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCA 117 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~ 117 (165)
|+..|+++++++.+.++|.+.||..|+++|.++++.++.|.|++++++||+|||++|+ +| .++++.+.
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~---~~-----~l~~l~~~---- 69 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYL---LP-----IMEKIKPE---- 69 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHH---HH-----HHHHCCTT----
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH---HH-----HHHHHHhC----
Confidence 3568999999999999999999999999999999999999999999999999999988 78 77776432
Q ss_pred CCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 118 SSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 118 ~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
..+..+++++|+ ++++.|+.+.+.....
T Consensus 70 ~~~~~~lil~Pt-~~L~~q~~~~~~~~~~ 97 (219)
T 1q0u_A 70 RAEVQAVITAPT-RELATQIYHETLKITK 97 (219)
T ss_dssp SCSCCEEEECSS-HHHHHHHHHHHHHHHT
T ss_pred cCCceEEEEcCc-HHHHHHHHHHHHHHhh
Confidence 345678899998 8898888887766543
No 14
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.55 E-value=6.1e-15 Score=116.75 Aligned_cols=98 Identities=31% Similarity=0.442 Sum_probs=80.0
Q ss_pred cccccCC--CcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCC
Q psy7691 40 QELTEGC--FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCA 117 (165)
Q Consensus 40 ~~f~~l~--l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~ 117 (165)
..|+++. +++.++++|.++||..|+++|.++++.++.|+|++++++||+|||++|+ +| .++++.+.....
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~---l~-----~l~~l~~~~~~~ 123 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL---IP-----AVELIVKLRFMP 123 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHH---HH-----HHHHHHHTTCCG
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHH---HH-----HHHHHHhccccc
Confidence 3556665 9999999999999999999999999999999999999999999999988 88 777665433333
Q ss_pred CCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 118 SSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 118 ~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
..+..+++++|+ ++++.|+.+.+.....
T Consensus 124 ~~~~~~lil~Pt-~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 124 RNGTGVLILSPT-RELAMQTFGVLKELMT 151 (262)
T ss_dssp GGCCCEEEECSS-HHHHHHHHHHHHHHTT
T ss_pred cCCceEEEEeCC-HHHHHHHHHHHHHHHh
Confidence 356678999999 9999999888877544
No 15
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.55 E-value=1.5e-14 Score=110.65 Aligned_cols=97 Identities=18% Similarity=0.276 Sum_probs=81.2
Q ss_pred CCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCC
Q psy7691 37 CPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRC 116 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~ 116 (165)
.....|+++++++.+.++|.+.||..|+++|.++++.++.|.|++++++||+|||++++ +| .++++.+.
T Consensus 11 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~---~~-----~~~~~~~~--- 79 (220)
T 1t6n_A 11 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV---LA-----TLQQLEPV--- 79 (220)
T ss_dssp ---CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH---HH-----HHHHCCCC---
T ss_pred ccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhh---HH-----HHHhhhcc---
Confidence 34567999999999999999999999999999999999999999999999999999988 77 66665331
Q ss_pred CCCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 117 ASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 117 ~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
..+..+++++|+ ++++.|+.+.+.....
T Consensus 80 -~~~~~~lil~Pt-~~L~~q~~~~~~~~~~ 107 (220)
T 1t6n_A 80 -TGQVSVLVMCHT-RELAFQISKEYERFSK 107 (220)
T ss_dssp -TTCCCEEEECSC-HHHHHHHHHHHHHHTT
T ss_pred -CCCEEEEEEeCC-HHHHHHHHHHHHHHHh
Confidence 234578999999 8999998887776543
No 16
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.55 E-value=2.2e-14 Score=108.46 Aligned_cols=96 Identities=32% Similarity=0.529 Sum_probs=82.1
Q ss_pred ccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCC
Q psy7691 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSG 120 (165)
Q Consensus 41 ~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g 120 (165)
.|+++++++.+.+.|.+.||..|+++|.++++.++.|.|++++++||+|||++++ +| .++++... +....+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~---~~-----~~~~l~~~-~~~~~~ 72 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFA---LP-----IAERLAPS-QERGRK 72 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH---HH-----HHHHCCCC-CCTTCC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHH---HH-----HHHHHhhc-cccCCC
Confidence 6999999999999999999999999999999999999999999999999999887 77 67766432 222345
Q ss_pred ceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 121 TAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 121 ~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
..+++++|+ ++++.|+.+.+.....
T Consensus 73 ~~~lil~P~-~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 73 PRALVLTPT-RELALQVASELTAVAP 97 (207)
T ss_dssp CSEEEECSS-HHHHHHHHHHHHHHCT
T ss_pred CcEEEEECC-HHHHHHHHHHHHHHhh
Confidence 678899999 8999998888877643
No 17
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.54 E-value=6.8e-15 Score=115.69 Aligned_cols=95 Identities=27% Similarity=0.407 Sum_probs=81.6
Q ss_pred CCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCC
Q psy7691 37 CPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRC 116 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~ 116 (165)
.++..|+++++++.+.++|...||..|+++|.++++.++.|+|++++++||+|||++++ +| .++++.+.
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~---~~-----il~~l~~~--- 108 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA---LP-----ILNALLET--- 108 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH---HH-----HHHHHHHS---
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH---HH-----HHHHHhcC---
Confidence 45788999999999999999999999999999999999999999999999999999988 77 66665432
Q ss_pred CCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 117 ASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 117 ~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
..+..+++++|+ ++++.|+.+.+...
T Consensus 109 -~~~~~~lil~Pt-r~L~~q~~~~~~~~ 134 (249)
T 3ber_A 109 -PQRLFALVLTPT-RELAFQISEQFEAL 134 (249)
T ss_dssp -CCSSCEEEECSS-HHHHHHHHHHHHHH
T ss_pred -CCCceEEEEeCC-HHHHHHHHHHHHHH
Confidence 234568899998 88888888776654
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.51 E-value=4.3e-14 Score=116.89 Aligned_cols=103 Identities=20% Similarity=0.281 Sum_probs=86.8
Q ss_pred EecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHh
Q psy7691 30 VKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHR 109 (165)
Q Consensus 30 ~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r 109 (165)
....+.+++...|+++++++.+.++|...||..|+++|.++++.++.|.|++++++||+|||++++ +| .++.
T Consensus 27 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~---~~-----~~~~ 98 (410)
T 2j0s_A 27 FETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS---IS-----VLQC 98 (410)
T ss_dssp CCCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH---HH-----HHHT
T ss_pred cCCCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHH---HH-----HHHH
Confidence 334445567789999999999999999999999999999999999999999999999999999988 77 6666
Q ss_pred hccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 110 IGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 110 ~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
+.. ...+..+++++|+ ++++.|+.+.+....
T Consensus 99 l~~----~~~~~~~lil~Pt-~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 99 LDI----QVRETQALILAPT-RELAVQIQKGLLALG 129 (410)
T ss_dssp CCT----TSCSCCEEEECSS-HHHHHHHHHHHHHHT
T ss_pred Hhh----ccCCceEEEEcCc-HHHHHHHHHHHHHHh
Confidence 532 2345678999998 899999988887654
No 19
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.49 E-value=4.7e-14 Score=119.63 Aligned_cols=105 Identities=21% Similarity=0.360 Sum_probs=85.8
Q ss_pred cEEecCCCCCC---ccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcC--CCeeeecccCCcccceeeecCCCCC
Q psy7691 28 ITVKGNNIPCP---TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLAVINFDYPNS 102 (165)
Q Consensus 28 i~~~~~~~p~~---i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G--~di~~~a~tgsGKt~~~~~~~lP~~ 102 (165)
+.+.+.+.+.| +..|+++++++.++++|..+||..|+++|.++++.++.| .|++++++||||||++|+ +|
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~---l~-- 151 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV---LA-- 151 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHH---HH--
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHH---HH--
Confidence 33444444444 668999999999999999999999999999999999987 999999999999999988 77
Q ss_pred hhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 103 SEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 103 ~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
.++++.. +..+..+++++|+ ++++.|+.+.+....
T Consensus 152 ---il~~l~~----~~~~~~~lil~Pt-~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 152 ---MLSQVEP----ANKYPQCLCLSPT-YELALQTGKVIEQMG 186 (479)
T ss_dssp ---HHTTCCT----TSCSCCEEEECSS-HHHHHHHHHHHHHHH
T ss_pred ---HHHHHhh----cCCCCcEEEEeCh-HHHHHHHHHHHHHHH
Confidence 6666643 2345578889998 999999877776643
No 20
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.47 E-value=1.5e-13 Score=113.10 Aligned_cols=98 Identities=19% Similarity=0.338 Sum_probs=84.1
Q ss_pred CCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcC--CCeeeecccCCcccceeeecCCCCChhHHHHhhccCC
Q psy7691 37 CPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTG 114 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G--~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~ 114 (165)
.++..|+++++++.++++|.+.||..|+++|.++++.++.| .|++++++||+|||++++ +| .++++.+.
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~---~~-----~~~~~~~~- 92 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV---LA-----MLSQVEPA- 92 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH---HH-----HHHHCCTT-
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH---HH-----HHHHhhhc-
Confidence 34778999999999999999999999999999999999998 999999999999999988 77 67766432
Q ss_pred CCCCCCceEEEECCCcHHHHHHHHHHHHhcCCC
Q psy7691 115 RCASSGTAYTFFTPNNGKQAKELIAVLTEASQP 147 (165)
Q Consensus 115 r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~ 147 (165)
..+..+++++|+ ++++.|+.+.+......
T Consensus 93 ---~~~~~~lil~P~-~~L~~q~~~~~~~~~~~ 121 (412)
T 3fht_A 93 ---NKYPQCLCLSPT-YELALQTGKVIEQMGKF 121 (412)
T ss_dssp ---SCSCCEEEECSS-HHHHHHHHHHHHHHTTT
T ss_pred ---CCCCCEEEECCC-HHHHHHHHHHHHHHHhh
Confidence 345578889998 99999998888775543
No 21
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.44 E-value=9.2e-14 Score=119.92 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=81.0
Q ss_pred ccccccC----CCcHHHHHHHHhCCCCCCchHHHHHHHHHH--cCCCeeeecccCCcccceeeecCCCCChhHHHHhhcc
Q psy7691 39 TQELTEG----CFPNAVLQHLKGQGFEEPTAIQAQGWPIAL--SGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGR 112 (165)
Q Consensus 39 i~~f~~l----~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l--~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr 112 (165)
...|+++ .+++.++++|.+.||..|+++|.++++.++ .|+|++++++||+|||++|+ +| .++++.+
T Consensus 67 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~---lp-----il~~l~~ 138 (563)
T 3i5x_A 67 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFL---IP-----IFQHLIN 138 (563)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHH---HH-----HHHHHHH
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHH---HH-----HHHHHHh
Confidence 4456555 399999999999999999999999999999 67899999999999999998 88 7777765
Q ss_pred CCCCCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 113 TGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 113 ~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
.......+..+++++|+ ++++.|+.+.+..
T Consensus 139 ~~~~~~~~~~~lil~Pt-r~La~Q~~~~~~~ 168 (563)
T 3i5x_A 139 TKFDSQYMVKAVIVAPT-RDLALQIEAEVKK 168 (563)
T ss_dssp TTTSSTTSCCEEEECSS-HHHHHHHHHHHHH
T ss_pred ccccccCCeeEEEEcCc-HHHHHHHHHHHHH
Confidence 54444456678999999 8999888887766
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=9.4e-14 Score=120.86 Aligned_cols=99 Identities=18% Similarity=0.209 Sum_probs=82.7
Q ss_pred CCCccccccCC----CcHHHHHHHHhCCCCCCchHHHHHHHHHH--cCCCeeeecccCCcccceeeecCCCCChhHHHHh
Q psy7691 36 PCPTQELTEGC----FPNAVLQHLKGQGFEEPTAIQAQGWPIAL--SGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHR 109 (165)
Q Consensus 36 p~~i~~f~~l~----l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l--~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r 109 (165)
+.+...|+++. +++.++++|...||..|+++|.++++.++ .|.|++++++||+|||++|+ +| .+++
T Consensus 13 ~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~---lp-----il~~ 84 (579)
T 3sqw_A 13 NSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFL---IP-----IFQH 84 (579)
T ss_dssp SCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHH---HH-----HHHH
T ss_pred CCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHH---HH-----HHHH
Confidence 33445666553 99999999999999999999999999999 78999999999999999998 88 7777
Q ss_pred hccCCCCCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 110 IGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 110 ~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
+.+....+..+..+++++|+ ++++.|+.+.+..
T Consensus 85 l~~~~~~~~~~~~~lvl~Pt-r~La~Q~~~~~~~ 117 (579)
T 3sqw_A 85 LINTKFDSQYMVKAVIVAPT-RDLALQIEAEVKK 117 (579)
T ss_dssp HHHTTTSSTTSCCEEEECSS-HHHHHHHHHHHHH
T ss_pred HHhccccccCCCeEEEEcch-HHHHHHHHHHHHH
Confidence 76554444556788999999 8998888887775
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.44 E-value=3.1e-13 Score=110.32 Aligned_cols=95 Identities=22% Similarity=0.415 Sum_probs=81.5
Q ss_pred CccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcC--CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCC
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGR 115 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G--~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r 115 (165)
...+|+++++++.+.++|.+.||..|+++|.++++.++.| .|++++++||+|||++++ +| .++++...
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~---~~-----~~~~~~~~-- 72 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS---LT-----MLTRVNPE-- 72 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHH---HH-----HHHHCCTT--
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHH---HH-----HHHHhccC--
Confidence 3578999999999999999999999999999999999998 999999999999999888 67 66665332
Q ss_pred CCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 116 CASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 116 ~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
..+..+++++|+ ++++.|+.+.+....
T Consensus 73 --~~~~~~lil~P~-~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 73 --DASPQAICLAPS-RELARQTLEVVQEMG 99 (395)
T ss_dssp --CCSCCEEEECSS-HHHHHHHHHHHHHHT
T ss_pred --CCCccEEEECCC-HHHHHHHHHHHHHHh
Confidence 345578899999 899999888887744
No 24
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.42 E-value=4.1e-13 Score=110.50 Aligned_cols=98 Identities=22% Similarity=0.404 Sum_probs=81.0
Q ss_pred CCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCC
Q psy7691 36 PCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGR 115 (165)
Q Consensus 36 p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r 115 (165)
......|+++++++.+.++|.++||..|+++|.++++.++.|.|++++++||+|||++++ +| .++.+..
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~---~~-----~~~~~~~--- 85 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFV---IP-----TLEKVKP--- 85 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHH---HH-----HHHHCCT---
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHH---HH-----HHHHHhh---
Confidence 345678999999999999999999999999999999999999999999999999999888 77 6665532
Q ss_pred CCCCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 116 CASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 116 ~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
+..+..+++++|+ +.++.|+.+.+.....
T Consensus 86 -~~~~~~~lil~P~-~~L~~q~~~~~~~~~~ 114 (400)
T 1s2m_A 86 -KLNKIQALIMVPT-RELALQTSQVVRTLGK 114 (400)
T ss_dssp -TSCSCCEEEECSS-HHHHHHHHHHHHHHTT
T ss_pred -ccCCccEEEEcCC-HHHHHHHHHHHHHHhc
Confidence 2345578899998 8888888888876544
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.42 E-value=2.8e-13 Score=110.89 Aligned_cols=99 Identities=24% Similarity=0.351 Sum_probs=85.1
Q ss_pred CCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccC
Q psy7691 34 NIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRT 113 (165)
Q Consensus 34 ~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~ 113 (165)
...+++..|+++++++.+.++|...||..|+++|.++++.++.|.|++++++||+|||+++. +| .++++...
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~---~~-----~~~~l~~~ 86 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS---IA-----ALQRIDTS 86 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH---HH-----HHHHCCTT
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH---HH-----HHHHhhcc
Confidence 35567889999999999999999999999999999999999999999999999999999887 77 67766432
Q ss_pred CCCCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 114 GRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 114 ~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
..+..+++++|+ +.++.|+.+.+....
T Consensus 87 ----~~~~~~lil~P~-~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 87 ----VKAPQALMLAPT-RELALQIQKVVMALA 113 (394)
T ss_dssp ----CCSCCEEEECSS-HHHHHHHHHHHHHHT
T ss_pred ----CCCCCEEEEcCC-HHHHHHHHHHHHHHh
Confidence 345578999998 889888888776644
No 26
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.41 E-value=3.9e-13 Score=110.04 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=80.4
Q ss_pred cccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCC
Q psy7691 40 QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASS 119 (165)
Q Consensus 40 ~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~ 119 (165)
..|+++++++.+.++|.++||..|+++|.++++.++.|.|++++++||+|||++++ +| .++.+.+. ..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~---~~-----~~~~l~~~----~~ 75 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV---LA-----TLQQLEPV----TG 75 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHH---HH-----HHHHCCCC----TT
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHH---HH-----HHHhhccc----CC
Confidence 57999999999999999999999999999999999999999999999999999988 77 66665332 34
Q ss_pred CceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 120 GTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 120 g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
+..+++++|+ +.++.|+.+.+.....
T Consensus 76 ~~~~lil~P~-~~L~~q~~~~~~~~~~ 101 (391)
T 1xti_A 76 QVSVLVMCHT-RELAFQISKEYERFSK 101 (391)
T ss_dssp CCCEEEECSC-HHHHHHHHHHHHHHTT
T ss_pred CeeEEEECCC-HHHHHHHHHHHHHHHh
Confidence 5578999999 8999988887776543
No 27
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.41 E-value=7.3e-13 Score=109.18 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=85.5
Q ss_pred cCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhc
Q psy7691 32 GNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIG 111 (165)
Q Consensus 32 ~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~g 111 (165)
..+.+..+..|+++++++.+.+.|.+.||..|+++|.++++.++.|.|++++++||+|||+++. +| .++++.
T Consensus 32 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~---~~-----~~~~~~ 103 (414)
T 3eiq_A 32 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA---IS-----ILQQIE 103 (414)
T ss_dssp CCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHH---HH-----HHHHCC
T ss_pred CCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHH---HH-----HHHHHh
Confidence 3455667789999999999999999999999999999999999999999999999999999987 77 676664
Q ss_pred cCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 112 RTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 112 r~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
.. ..+..+++++|+ +.++.|+.+.+...
T Consensus 104 ~~----~~~~~~lil~P~-~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 104 LD----LKATQALVLAPT-RELAQQIQKVVMAL 131 (414)
T ss_dssp TT----SCSCCEEEECSS-HHHHHHHHHHHHHH
T ss_pred hc----CCceeEEEEeCh-HHHHHHHHHHHHHH
Confidence 32 245568999999 88888888887764
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.32 E-value=2.9e-12 Score=103.49 Aligned_cols=92 Identities=27% Similarity=0.452 Sum_probs=78.1
Q ss_pred ccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcC-CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCC
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCA 117 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~ 117 (165)
...|+++++++.+.++|.+.||..|+++|.++++.++.| .+++++++||+|||++++ +| .++.+..
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~---~~-----~~~~~~~----- 71 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFA---IP-----LIELVNE----- 71 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHH---HH-----HHHHSCS-----
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHH---HH-----HHHHhcc-----
Confidence 467999999999999999999999999999999999998 799999999999999887 66 4554422
Q ss_pred CCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 118 SSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 118 ~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
..+..+++++|+ +.++.|+.+.+...
T Consensus 72 ~~~~~~lil~P~-~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 72 NNGIEAIILTPT-RELAIQVADEIESL 97 (367)
T ss_dssp SSSCCEEEECSC-HHHHHHHHHHHHHH
T ss_pred cCCCcEEEEcCC-HHHHHHHHHHHHHH
Confidence 245678899998 88888888877664
No 29
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.28 E-value=8.8e-12 Score=94.58 Aligned_cols=112 Identities=34% Similarity=0.473 Sum_probs=82.8
Q ss_pred Ccccccc-CCCcHHHHHHHHhCCCCC------Cch-HHHHHHHHHH--------------cCCCeeeecccCCcccceee
Q psy7691 38 PTQELTE-GCFPNAVLQHLKGQGFEE------PTA-IQAQGWPIAL--------------SGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 38 ~i~~f~~-l~l~~~l~~~l~~~g~~~------~t~-~Q~~a~~~~l--------------~G~di~~~a~tgsGKt~~~~ 95 (165)
+++.|.. ....+.+.+.|...|+.. .+. .+..++..+. +|.|+..+. .++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~--------~VI 127 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQ--------HVI 127 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCS--------EEE
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCC--------EEE
Confidence 4556654 467778888888777643 222 2333444444 444444333 799
Q ss_pred ecCCCCChhHHHHhhccCCCCCCCCceEEEECCC-cHHHHHHHHHHHHhcCCCCChHHHHHhh
Q psy7691 96 NFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN-NGKQAKELIAVLTEASQPIPPQLQDLAN 157 (165)
Q Consensus 96 ~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~-~~~~~~~i~~~l~~~~~~~p~~~~~~~~ 157 (165)
+||+|.+.++|+||+||+||.|..|.+++++++. +...+..+.+.+....+++|+++.+++.
T Consensus 128 ~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 128 NYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp ESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred EeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcCCHHHHhhcC
Confidence 9999999999999999999999999999999987 6788999999999999999999887654
No 30
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.23 E-value=4.4e-12 Score=106.83 Aligned_cols=116 Identities=28% Similarity=0.448 Sum_probs=83.7
Q ss_pred ccccc-cCCCcHHHHHHHHhCCCCCC------c-hHHHHHHHHHHcCC-Ceeeec-ccCCcc----cceeeecCCCCChh
Q psy7691 39 TQELT-EGCFPNAVLQHLKGQGFEEP------T-AIQAQGWPIALSGR-DMVGIA-QTGSGK----TLAVINFDYPNSSE 104 (165)
Q Consensus 39 i~~f~-~l~l~~~l~~~l~~~g~~~~------t-~~Q~~a~~~~l~G~-di~~~a-~tgsGK----t~~~~~~~lP~~~~ 104 (165)
++.|. .....+.+.+.|.+.|+... + ..+.+++..+..|. +++++. .-+.|= ..+|+|||+|.+.+
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~ 382 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKID 382 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHH
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHH
Confidence 44444 45778888888988887531 1 22334444454442 232221 112221 12799999999999
Q ss_pred HHHHhhccCCCCCCCCceEEEECCC-cHHHHHHHHHHHHhcCCCCChHHHH
Q psy7691 105 DYIHRIGRTGRCASSGTAYTFFTPN-NGKQAKELIAVLTEASQPIPPQLQD 154 (165)
Q Consensus 105 ~~i~r~gr~~r~~~~g~~~~~~~p~-~~~~~~~i~~~l~~~~~~~p~~~~~ 154 (165)
+|+||+||+||.|+.|.+++++.|. +...+..+.+.+....+++|+|+.+
T Consensus 383 ~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 383 DYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred HHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 9999999999999999999999976 5778999999999999999999865
No 31
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.21 E-value=8.4e-12 Score=94.09 Aligned_cols=122 Identities=30% Similarity=0.452 Sum_probs=88.3
Q ss_pred CCcccccc-CCCcHHHHHHHHhCCCCCC-------chHHHHHHHHHHcCC-Ceeeec-ccCCcc----cceeeecCCCCC
Q psy7691 37 CPTQELTE-GCFPNAVLQHLKGQGFEEP-------TAIQAQGWPIALSGR-DMVGIA-QTGSGK----TLAVINFDYPNS 102 (165)
Q Consensus 37 ~~i~~f~~-l~l~~~l~~~l~~~g~~~~-------t~~Q~~a~~~~l~G~-di~~~a-~tgsGK----t~~~~~~~lP~~ 102 (165)
..++.|.. ....+.+.+.|...|+... ...+..++..+..|. +++++. .-+.|- ...+++||+|.+
T Consensus 47 ~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s 126 (185)
T 2jgn_A 47 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSD 126 (185)
T ss_dssp SCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSS
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCC
Confidence 34556654 4778888888988887431 122333444555553 333322 222332 227899999999
Q ss_pred hhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChHHHHHhhh
Q psy7691 103 SEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQDLANS 158 (165)
Q Consensus 103 ~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~~~~~~~~ 158 (165)
..+|+||+||++|.|..|.+++++++.+...+..+.+.+....+++|.++.+++..
T Consensus 127 ~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~a~~ 182 (185)
T 2jgn_A 127 IEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYE 182 (185)
T ss_dssp HHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHC-
T ss_pred HHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998764
No 32
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.21 E-value=2.8e-11 Score=96.77 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=69.2
Q ss_pred CcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEE
Q psy7691 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFF 126 (165)
Q Consensus 47 l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~ 126 (165)
|++.+.++|+++||..|+++|.++++.++.|.+++++++||+|||++++ +| .+++ +..++++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~---~~-----~~~~----------~~~~liv 62 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYA---IP-----ILEL----------GMKSLVV 62 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH---HH-----HHHH----------TCCEEEE
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHH---HH-----HHhh----------cCCEEEE
Confidence 5789999999999999999999999999999999999999999999887 66 4443 3357888
Q ss_pred CCCcHHHHHHHHHHHHhcC
Q psy7691 127 TPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 127 ~p~~~~~~~~i~~~l~~~~ 145 (165)
+|+ +.++.|+.+.+....
T Consensus 63 ~P~-~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 63 TPT-RELTRQVASHIRDIG 80 (337)
T ss_dssp CSS-HHHHHHHHHHHHHHT
T ss_pred eCC-HHHHHHHHHHHHHHh
Confidence 998 888888888887643
No 33
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.13 E-value=3.7e-11 Score=103.81 Aligned_cols=88 Identities=22% Similarity=0.213 Sum_probs=75.6
Q ss_pred cccccCCCcHHHHHHHHh-CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCC
Q psy7691 40 QELTEGCFPNAVLQHLKG-QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCAS 118 (165)
Q Consensus 40 ~~f~~l~l~~~l~~~l~~-~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~ 118 (165)
..|+++++++.+.+.|++ .||..++++|.++++.++.|.|++++++||+|||++|. +| .+.+-
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~---lp-----~l~~~-------- 65 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQ---IP-----ALLLN-------- 65 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHH---HH-----HHHSS--------
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHH---HH-----HHHhC--------
Confidence 479999999999999999 89999999999999999999999999999999999988 78 44331
Q ss_pred CCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 119 SGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 119 ~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
| .+++++|+ +.++.+..+.+...+.
T Consensus 66 -g-~~lvi~P~-~aL~~q~~~~l~~~gi 90 (523)
T 1oyw_A 66 -G-LTVVVSPL-ISLMKDQVDQLQANGV 90 (523)
T ss_dssp -S-EEEEECSC-HHHHHHHHHHHHHTTC
T ss_pred -C-CEEEECCh-HHHHHHHHHHHHHcCC
Confidence 2 46888888 8888888888876543
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.13 E-value=1.7e-11 Score=105.21 Aligned_cols=119 Identities=17% Similarity=0.260 Sum_probs=62.1
Q ss_pred CHHHHHHHHhhcCcEEe-cCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcC--CCeeeecccCCccc
Q psy7691 15 SESEVEAFRQKKEITVK-GNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKT 91 (165)
Q Consensus 15 ~~~~~~~~~~~~~i~~~-~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G--~di~~~a~tgsGKt 91 (165)
+.++...+.+...+... ....|.++..|...++++.+.+.+.+.||..|+++|.+|++.++.| .+++++++||+|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT 172 (508)
T 3fho_A 93 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKT 172 (508)
T ss_dssp ----------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHH
Confidence 33444545444443322 2223344666777789999999999999999999999999999998 99999999999999
Q ss_pred ceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 92 ~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
++++ +| .++++.+. ..+..+++++|+ +.++.|+.+.+.....
T Consensus 173 ~~~~---~~-----il~~l~~~----~~~~~vLvl~P~-~~L~~Q~~~~~~~~~~ 214 (508)
T 3fho_A 173 AAFA---LT-----MLSRVDAS----VPKPQAICLAPS-RELARQIMDVVTEMGK 214 (508)
T ss_dssp HHHH---HH-----HHHHSCTT----CCSCCEEEECSC-HHHHHHHHHHHHHHST
T ss_pred HHHH---HH-----HHHHHHhC----CCCceEEEEECc-HHHHHHHHHHHHHhCC
Confidence 9887 67 67766432 345578899998 8899998888877543
No 35
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.08 E-value=1.8e-10 Score=101.04 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=75.0
Q ss_pred CCccccc--cCCCcHHHHHHHHh-CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccC
Q psy7691 37 CPTQELT--EGCFPNAVLQHLKG-QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRT 113 (165)
Q Consensus 37 ~~i~~f~--~l~l~~~l~~~l~~-~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~ 113 (165)
.....|+ ++++++.+.+.|++ .||..++++|.++++.++.|.|+++++|||+|||++|. +| .+.+
T Consensus 16 ~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~---lp-----al~~---- 83 (591)
T 2v1x_A 16 SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQ---LP-----ALCS---- 83 (591)
T ss_dssp CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHH---HH-----HHTS----
T ss_pred cchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHH---HH-----HHHc----
Confidence 3445665 47889999999999 69999999999999999999999999999999999988 78 4432
Q ss_pred CCCCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 114 GRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 114 ~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
+..+++++|+ ++++.|..+.+...+
T Consensus 84 ------~g~~lVisP~-~~L~~q~~~~l~~~g 108 (591)
T 2v1x_A 84 ------DGFTLVICPL-ISLMEDQLMVLKQLG 108 (591)
T ss_dssp ------SSEEEEECSC-HHHHHHHHHHHHHHT
T ss_pred ------CCcEEEEeCH-HHHHHHHHHHHHhcC
Confidence 1267888898 888888888887753
No 36
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.05 E-value=2.4e-10 Score=94.28 Aligned_cols=115 Identities=31% Similarity=0.498 Sum_probs=87.7
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCCC------Cch-HHHHH--------------HHHHHcCCCeeeecccCCcccceee
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFEE------PTA-IQAQG--------------WPIALSGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~~------~t~-~Q~~a--------------~~~~l~G~di~~~a~tgsGKt~~~~ 95 (165)
.++.|. .....+.+.+.|.+.|+.. .+. .+.+. ++.+.+|.|+..+. +++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~--------~Vi 349 (417)
T 2i4i_A 278 LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVK--------HVI 349 (417)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEE--------EEE
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCC--------EEE
Confidence 344554 4467778888888877643 122 22233 33344555655555 899
Q ss_pred ecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChHHHHHhhhCC
Q psy7691 96 NFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQDLANSNP 160 (165)
Q Consensus 96 ~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~~~~~~~~~~ 160 (165)
+||+|.+..+|+||+||+||.|+.|.+++++.+.+...+.++.+.+....+++|.++..++....
T Consensus 350 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 414 (417)
T 2i4i_A 350 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHH 414 (417)
T ss_dssp ESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHTCSC
T ss_pred EEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999887653
No 37
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.04 E-value=2.7e-10 Score=101.26 Aligned_cols=89 Identities=21% Similarity=0.266 Sum_probs=75.9
Q ss_pred ccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHH-HHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCC
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI-ALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCA 117 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~-~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~ 117 (165)
...|+++++++.+.+++.+.||..++++|.++++. +..|.+++++++||||||+++. +| .++.+..
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~---l~-----il~~~~~----- 73 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAE---MG-----IISFLLK----- 73 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHH---HH-----HHHHHHH-----
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHH---HH-----HHHHHHH-----
Confidence 46899999999999999999999999999999998 7889999999999999999887 66 5554432
Q ss_pred CCCceEEEECCCcHHHHHHHHHHHH
Q psy7691 118 SSGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 118 ~~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
.|..++++.|+ +.++.|+.+.++
T Consensus 74 -~~~~il~i~P~-r~La~q~~~~~~ 96 (715)
T 2va8_A 74 -NGGKAIYVTPL-RALTNEKYLTFK 96 (715)
T ss_dssp -SCSEEEEECSC-HHHHHHHHHHHG
T ss_pred -CCCeEEEEeCc-HHHHHHHHHHHH
Confidence 13478899998 888888888774
No 38
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.98 E-value=2e-10 Score=102.24 Aligned_cols=87 Identities=25% Similarity=0.274 Sum_probs=74.3
Q ss_pred ccccCCCcHHHHHHHHhCCCCCCchHHHHHHHH-HHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCC
Q psy7691 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI-ALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASS 119 (165)
Q Consensus 41 ~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~-~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~ 119 (165)
.|+++++++.+.+.+++.||..++++|.++++. +..|.+++++++||||||+++. +| .++.+...
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~---l~-----il~~~~~~------ 67 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAE---IA-----MVHRILTQ------ 67 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHH---HH-----HHHHHHHH------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHH---HH-----HHHHHHhC------
Confidence 689999999999999999999999999999998 8899999999999999999876 66 55554321
Q ss_pred CceEEEECCCcHHHHHHHHHHHH
Q psy7691 120 GTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 120 g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
|..++++.|+ +.++.|+.+.+.
T Consensus 68 ~~~~l~i~P~-raLa~q~~~~~~ 89 (720)
T 2zj8_A 68 GGKAVYIVPL-KALAEEKFQEFQ 89 (720)
T ss_dssp CSEEEEECSS-GGGHHHHHHHTG
T ss_pred CCEEEEEcCc-HHHHHHHHHHHH
Confidence 3578899998 788888877774
No 39
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.98 E-value=2.8e-10 Score=102.87 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=78.8
Q ss_pred cCChHhhcCCHHHHHHHHhhcCcEEecCCCCCCccccccCCCcHHHH---HH-HHhCCCCCCchHHHHHHHHHHcCCCee
Q psy7691 6 KTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVL---QH-LKGQGFEEPTAIQAQGWPIALSGRDMV 81 (165)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~i~~f~~l~l~~~l~---~~-l~~~g~~~~t~~Q~~a~~~~l~G~di~ 81 (165)
...+.++.+|++++.......+......+ .+.++ +++.+. ++ ....|| .||++|..++|.++.|+ +
T Consensus 31 ~~~~~~~~lsd~el~~~t~~~~~~~~~g~------~ld~~-l~ea~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~--I 100 (844)
T 1tf5_A 31 AIRGDYENLSDDALKHKTIEFKERLEKGA------TTDDL-LVEAFAVVREASRRVTGM-FPFKVQLMGGVALHDGN--I 100 (844)
T ss_dssp HTTHHHHTCCHHHHHHHHHHHHHHHHTTC------CHHHH-HHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS--E
T ss_pred hhhHHHHhCCHHHHHHHHHHHHHHHhcCC------ChHHH-HHHHHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC--E
Confidence 44578899999999666655443332211 11111 222211 11 224799 89999999999999998 8
Q ss_pred eecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 82 GIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 82 ~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
+.++||+|||++|. ||. |++.+ .|..+.+++|+ +++|.|+.+.+...
T Consensus 101 aea~TGeGKTlaf~---LP~----~l~aL--------~g~~vlVltpt-reLA~qd~e~~~~l 147 (844)
T 1tf5_A 101 AEMKTGEGKTLTST---LPV----YLNAL--------TGKGVHVVTVN-EYLASRDAEQMGKI 147 (844)
T ss_dssp EECCTTSCHHHHHH---HHH----HHHHT--------TSSCEEEEESS-HHHHHHHHHHHHHH
T ss_pred EEccCCcHHHHHHH---HHH----HHHHH--------cCCCEEEEeCC-HHHHHHHHHHHHHH
Confidence 99999999999999 893 33433 23468999999 99999888877653
No 40
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.97 E-value=4.5e-10 Score=93.23 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=64.3
Q ss_pred HHHHHHHHh-CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEEC
Q psy7691 49 NAVLQHLKG-QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127 (165)
Q Consensus 49 ~~l~~~l~~-~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~ 127 (165)
+.+.+.+++ .|| .|+++|.++++.++.|.|++++++||+|||++++ +| .++.. ..+..+++++
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l---~~-----~~~~~-------~~~~~~lil~ 71 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGM---MT-----ALWLA-------RKGKKSALVF 71 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHH---HH-----HHHHH-------TTTCCEEEEE
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHH---HH-----HHHHh-------cCCCEEEEEE
Confidence 345556666 477 6999999999999999999999999999999777 56 44444 2345788999
Q ss_pred CCcHHHHHHHHHHHHhcC
Q psy7691 128 PNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 128 p~~~~~~~~i~~~l~~~~ 145 (165)
|+ ++++.|+.+.+....
T Consensus 72 Pt-~~L~~q~~~~~~~~~ 88 (414)
T 3oiy_A 72 PT-VTLVKQTLERLQKLA 88 (414)
T ss_dssp SS-HHHHHHHHHHHHHHC
T ss_pred CC-HHHHHHHHHHHHHHc
Confidence 99 999999998888843
No 41
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.95 E-value=8.6e-11 Score=86.51 Aligned_cols=117 Identities=23% Similarity=0.321 Sum_probs=79.7
Q ss_pred CCcccccc-CCCcHHHHHHHHhCCCCC------Cc-hHHHHHHHHHHcCC-Ceeeec-ccCCccc----ceeeecCCCCC
Q psy7691 37 CPTQELTE-GCFPNAVLQHLKGQGFEE------PT-AIQAQGWPIALSGR-DMVGIA-QTGSGKT----LAVINFDYPNS 102 (165)
Q Consensus 37 ~~i~~f~~-l~l~~~l~~~l~~~g~~~------~t-~~Q~~a~~~~l~G~-di~~~a-~tgsGKt----~~~~~~~lP~~ 102 (165)
..++.|.. ....+.+.+.|...|+.. .+ ..+...+..+..|. +++++. .-+.|-. ..+++||+|.+
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~ 110 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPAN 110 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCC
Confidence 34555554 467788888898887643 12 23344555555553 333322 2233322 26899999999
Q ss_pred hhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChHHH
Q psy7691 103 SEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153 (165)
Q Consensus 103 ~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~~~ 153 (165)
..+|+||+||+||.|..|.+++++++.+...+..+.+.+....+++|.++.
T Consensus 111 ~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 111 KENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp GGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred HHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHH
Confidence 999999999999999999999999999999999999998888888876543
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.95 E-value=1.3e-10 Score=103.25 Aligned_cols=86 Identities=22% Similarity=0.249 Sum_probs=71.3
Q ss_pred ccccCC--CcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCC
Q psy7691 41 ELTEGC--FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCAS 118 (165)
Q Consensus 41 ~f~~l~--l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~ 118 (165)
.|++++ +++.+.+++++.||..++++|.++++.++.|.+++++++||||||+++. +| .++.+.+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~---l~-----il~~~~~------ 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAE---MA-----MVREAIK------ 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHH---HH-----HHHHHHT------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHH---HH-----HHHHHHh------
Confidence 588888 9999999999999999999999999999999999999999999999887 66 5555432
Q ss_pred CCceEEEECCCcHHHHHHHHHHHH
Q psy7691 119 SGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 119 ~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
+..++++.|+ +.++.|+.+.++
T Consensus 68 -~~~~l~i~P~-r~La~q~~~~~~ 89 (702)
T 2p6r_A 68 -GGKSLYVVPL-RALAGEKYESFK 89 (702)
T ss_dssp -TCCEEEEESS-HHHHHHHHHHHT
T ss_pred -CCcEEEEeCc-HHHHHHHHHHHH
Confidence 3467888898 888988888874
No 43
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.94 E-value=5.3e-10 Score=82.13 Aligned_cols=111 Identities=22% Similarity=0.258 Sum_probs=78.4
Q ss_pred CCcccccc-CCCcHHHHHHHHhCCCCC------Cc-hHHHHHHHHHHcCC-Ceeeecc-cCCcc----cceeeecCCCCC
Q psy7691 37 CPTQELTE-GCFPNAVLQHLKGQGFEE------PT-AIQAQGWPIALSGR-DMVGIAQ-TGSGK----TLAVINFDYPNS 102 (165)
Q Consensus 37 ~~i~~f~~-l~l~~~l~~~l~~~g~~~------~t-~~Q~~a~~~~l~G~-di~~~a~-tgsGK----t~~~~~~~lP~~ 102 (165)
..++.|.. ....+.+.+.|...|+.. .+ ..+...+..+..|. +++++.. -+.|- ...+++||+|.+
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~ 115 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLE 115 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSS
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCC
Confidence 34555654 467888888898887743 12 23334455555553 3443322 22332 227999999999
Q ss_pred hhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCC
Q psy7691 103 SEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQP 147 (165)
Q Consensus 103 ~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~ 147 (165)
..+|+||+||++|.|..|.+++++.+.+...+..+.+.+.....+
T Consensus 116 ~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 116 KESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp HHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEE
T ss_pred HHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCc
Confidence 999999999999999999999999999989899998887655443
No 44
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.91 E-value=4.8e-10 Score=86.03 Aligned_cols=112 Identities=18% Similarity=0.275 Sum_probs=79.4
Q ss_pred CCcccccc-CCCcHHHHHHHHhCCCCC-------CchHHHHHHHHHHcCC-Ceeeec-ccCCccc----ceeeecCCCCC
Q psy7691 37 CPTQELTE-GCFPNAVLQHLKGQGFEE-------PTAIQAQGWPIALSGR-DMVGIA-QTGSGKT----LAVINFDYPNS 102 (165)
Q Consensus 37 ~~i~~f~~-l~l~~~l~~~l~~~g~~~-------~t~~Q~~a~~~~l~G~-di~~~a-~tgsGKt----~~~~~~~lP~~ 102 (165)
.+++.|.. ....+.+.+.|...|+.. +...+..++..+..|. +++++. .-+.|-+ ..|++||+|.+
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~ 111 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDR 111 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcC
Confidence 45666655 466778888888877643 2234555666666663 343322 2223322 27999999999
Q ss_pred hhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCC
Q psy7691 103 SEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 103 ~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
..+|+||+||+||.|+.|.+++++++.+......+.+.+......+
T Consensus 112 ~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 157 (212)
T 3eaq_A 112 AEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRV 157 (212)
T ss_dssp HHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEEC
T ss_pred HHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeec
Confidence 9999999999999999999999999999888899988887665554
No 45
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.91 E-value=2.7e-10 Score=84.56 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=77.5
Q ss_pred CCcccccc-CCCcHHHHHHHHhCCCCC------Cch-HHHHHHHHHHcCC-Ceeeecc-cCCccc----ceeeecCCC--
Q psy7691 37 CPTQELTE-GCFPNAVLQHLKGQGFEE------PTA-IQAQGWPIALSGR-DMVGIAQ-TGSGKT----LAVINFDYP-- 100 (165)
Q Consensus 37 ~~i~~f~~-l~l~~~l~~~l~~~g~~~------~t~-~Q~~a~~~~l~G~-di~~~a~-tgsGKt----~~~~~~~lP-- 100 (165)
.+++.|.. ....+.+.+.|...|+.. .++ .+...+..+..|. +++++.. -+.|-. ..+++||+|
T Consensus 35 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~ 114 (175)
T 2rb4_A 35 GQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVK 114 (175)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC-
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCC
Confidence 34556654 467788888898887643 222 3344555666663 4443332 233422 268999999
Q ss_pred ----CChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCC
Q psy7691 101 ----NSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149 (165)
Q Consensus 101 ----~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p 149 (165)
.+..+|+||+||+||.|..|.+++++.+.+...+..+.+.+.....++|
T Consensus 115 ~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 167 (175)
T 2rb4_A 115 QGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLN 167 (175)
T ss_dssp -CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCEEEC
T ss_pred ccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcccccC
Confidence 9999999999999999999999999999988888899888877666554
No 46
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.87 E-value=2.2e-10 Score=85.16 Aligned_cols=118 Identities=20% Similarity=0.275 Sum_probs=82.3
Q ss_pred CCcccccc-CCCcHHHHHHHHhCCCCC------Cc-hHHHHHHHHHHcCC-Ceeeecc-cCCcc----cceeeecCCCCC
Q psy7691 37 CPTQELTE-GCFPNAVLQHLKGQGFEE------PT-AIQAQGWPIALSGR-DMVGIAQ-TGSGK----TLAVINFDYPNS 102 (165)
Q Consensus 37 ~~i~~f~~-l~l~~~l~~~l~~~g~~~------~t-~~Q~~a~~~~l~G~-di~~~a~-tgsGK----t~~~~~~~lP~~ 102 (165)
.+++.|.. ....+.+.+.|...|+.. .+ ..+..++..+..|. +++++.. -+.|- ...+++||+|.+
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~ 111 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPED 111 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSS
T ss_pred CcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCC
Confidence 34556654 477888888898887743 22 23345566666663 4443322 22332 237899999999
Q ss_pred hhHHHHhhccCCCCCCCCceEEEECCCc-HHHHHHHHHHHHhcCCCCChHHHH
Q psy7691 103 SEDYIHRIGRTGRCASSGTAYTFFTPNN-GKQAKELIAVLTEASQPIPPQLQD 154 (165)
Q Consensus 103 ~~~~i~r~gr~~r~~~~g~~~~~~~p~~-~~~~~~i~~~l~~~~~~~p~~~~~ 154 (165)
..+|+||+||+||.|..|.+++++.+.+ ...+..+.+.+.....++|.++..
T Consensus 112 ~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (172)
T 1t5i_A 112 SDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI 164 (172)
T ss_dssp HHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-----
T ss_pred HHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhhch
Confidence 9999999999999999999999999873 567889999988888888877543
No 47
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.80 E-value=1.9e-09 Score=87.33 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=77.3
Q ss_pred CCCccccccC-CCcHHHHHHHHhCCCCC-------CchHHHHHHHHHHcCC-Ceeeec-ccCCccc----ceeeecCCCC
Q psy7691 36 PCPTQELTEG-CFPNAVLQHLKGQGFEE-------PTAIQAQGWPIALSGR-DMVGIA-QTGSGKT----LAVINFDYPN 101 (165)
Q Consensus 36 p~~i~~f~~l-~l~~~l~~~l~~~g~~~-------~t~~Q~~a~~~~l~G~-di~~~a-~tgsGKt----~~~~~~~lP~ 101 (165)
+.+++.|... ...+.+.+.|...|+.. +...|...+..+..|. +++++. .-+.|-+ .+|+|||+|.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~ 107 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPD 107 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCC
Confidence 3456666654 66778888898888743 2334555666666553 443322 2233322 2799999999
Q ss_pred ChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCC
Q psy7691 102 SSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 102 ~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
+..+|+||+||+||.|+.|.+++++++.+......+.+.+......+
T Consensus 108 s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~ 154 (300)
T 3i32_A 108 RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRV 154 (300)
T ss_dssp STTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEEC
T ss_pred CHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEe
Confidence 99999999999999999999999999999888999998887765544
No 48
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.76 E-value=8.4e-09 Score=96.18 Aligned_cols=77 Identities=19% Similarity=0.171 Sum_probs=62.5
Q ss_pred HHHHHHh-CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCC
Q psy7691 51 VLQHLKG-QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129 (165)
Q Consensus 51 l~~~l~~-~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~ 129 (165)
+.+.+.. .|| .||++|.+|++.++.|+|++++|+||||||++++ +| .++.+ ..|..+++++|+
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l---~~-----il~~~-------~~~~~~Lil~Pt 130 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGM---MT-----ALWLA-------RKGKKSALVFPT 130 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHH---HH-----HHHHH-------TTTCCEEEEESS
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHH---HH-----HHHHH-------hcCCeEEEEech
Confidence 3344443 689 4999999999999999999999999999999766 45 44444 245678999999
Q ss_pred cHHHHHHHHHHHHhc
Q psy7691 130 NGKQAKELIAVLTEA 144 (165)
Q Consensus 130 ~~~~~~~i~~~l~~~ 144 (165)
++++.|+.+.+...
T Consensus 131 -reLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 131 -VTLVKQTLERLQKL 144 (1104)
T ss_dssp -HHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHh
Confidence 99999999999883
No 49
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.75 E-value=6.3e-09 Score=91.62 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=61.3
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcH
Q psy7691 52 LQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNG 131 (165)
Q Consensus 52 ~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~ 131 (165)
...+..+||..|+++|.++++.++.|.|++++++||+|||++++ +| .++.+.+. ..+ .+..+++++|+ +
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~---~~-----i~~~l~~~-~~~-~~~~~lvl~Pt-~ 71 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSL---LI-----CEHHLKKF-PQG-QKGKVVFFANQ-I 71 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH---HH-----HHHHHHHS-CTT-CCCCEEEECSS-H
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH---HH-----HHHHHHhC-ccC-CCCeEEEEECC-H
Confidence 45678899999999999999999999999999999999999988 77 55555332 111 22467889998 7
Q ss_pred HHHHHHHHHHHhcC
Q psy7691 132 KQAKELIAVLTEAS 145 (165)
Q Consensus 132 ~~~~~i~~~l~~~~ 145 (165)
.++.|..+.+....
T Consensus 72 ~L~~Q~~~~~~~~~ 85 (696)
T 2ykg_A 72 PVYEQNKSVFSKYF 85 (696)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 88888877776654
No 50
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.75 E-value=9.9e-09 Score=95.29 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=63.6
Q ss_pred HHHHHHh-CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCC
Q psy7691 51 VLQHLKG-QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129 (165)
Q Consensus 51 l~~~l~~-~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~ 129 (165)
+.+.+.+ .||. | ++|.++++.++.|+|++++++||||||+ |. +| .+.++.. .+..+++++|+
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~---lp-----~l~~~~~------~~~~~lil~Pt 108 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FG---LA-----MSLFLAL------KGKRCYVIFPT 108 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HH---HH-----HHHHHHT------TSCCEEEEESC
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HH---HH-----HHHHHhh------cCCeEEEEecc
Confidence 3355544 7999 9 9999999999999999999999999997 66 77 6666533 34578899999
Q ss_pred cHHHHHHHHHHHHhcCCC
Q psy7691 130 NGKQAKELIAVLTEASQP 147 (165)
Q Consensus 130 ~~~~~~~i~~~l~~~~~~ 147 (165)
++++.|+.+.+......
T Consensus 109 -reLa~Q~~~~l~~l~~~ 125 (1054)
T 1gku_B 109 -SLLVIQAAETIRKYAEK 125 (1054)
T ss_dssp -HHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHhh
Confidence 99999988888765443
No 51
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.74 E-value=1.9e-09 Score=88.60 Aligned_cols=118 Identities=21% Similarity=0.335 Sum_probs=74.9
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCCCC------ch-HHHHHHHHHHcCC-Ceeeecc-cCCccc----ceeeecCCCCCh
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFEEP------TA-IQAQGWPIALSGR-DMVGIAQ-TGSGKT----LAVINFDYPNSS 103 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~~~------t~-~Q~~a~~~~l~G~-di~~~a~-tgsGKt----~~~~~~~lP~~~ 103 (165)
.++.|. .....+.+.+.|...|+... +. .+...+..+..|. +++++.. -+.|=. ..|++||+|.+.
T Consensus 282 ~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~ 361 (414)
T 3eiq_A 282 QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNR 361 (414)
T ss_dssp SCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSST
T ss_pred cEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCH
Confidence 344444 44677788888888777542 12 3344455555553 3332222 223322 268999999999
Q ss_pred hHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChHHHHH
Q psy7691 104 EDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQDL 155 (165)
Q Consensus 104 ~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~~~~~ 155 (165)
.+|+||+||+||.|+.|.+++++.+.+...+..+.++++....++|..+.++
T Consensus 362 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 362 ENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp HHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred HHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 9999999999999999999999999999999999999999999999887765
No 52
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.16 E-value=1.7e-09 Score=79.94 Aligned_cols=103 Identities=22% Similarity=0.340 Sum_probs=73.1
Q ss_pred Ccccccc-CCCcHHHHHHHHhCCCCCC------ch-HHH--------------HHHHHHHcCCCeeeecccCCcccceee
Q psy7691 38 PTQELTE-GCFPNAVLQHLKGQGFEEP------TA-IQA--------------QGWPIALSGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 38 ~i~~f~~-l~l~~~l~~~l~~~g~~~~------t~-~Q~--------------~a~~~~l~G~di~~~a~tgsGKt~~~~ 95 (165)
.++.|.. ....+.+.+.|...|+... +. .+. .|++.+.+|.|+..+. .++
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~--------~Vi 103 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVS--------HVF 103 (170)
Confidence 3445544 4666677777766655331 11 111 1344455666665555 799
Q ss_pred ecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCC
Q psy7691 96 NFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 96 ~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
+||+|.+..+|+||+||+||.|..|.+++++.+.+...+..+.+.+.....+.
T Consensus 104 ~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (170)
T 2yjt_D 104 NFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKAR 156 (170)
Confidence 99999999999999999999999999999999998888888888776655443
No 53
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.69 E-value=2.5e-09 Score=88.19 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=81.8
Q ss_pred ccccc-cCCCcHHHHHHHHhCCCCC------Cch-HHHHHHHHHHcCC-Ceeeecc-cCCcc----cceeeecCCCCChh
Q psy7691 39 TQELT-EGCFPNAVLQHLKGQGFEE------PTA-IQAQGWPIALSGR-DMVGIAQ-TGSGK----TLAVINFDYPNSSE 104 (165)
Q Consensus 39 i~~f~-~l~l~~~l~~~l~~~g~~~------~t~-~Q~~a~~~~l~G~-di~~~a~-tgsGK----t~~~~~~~lP~~~~ 104 (165)
++.|. .....+.+.+.|.+.|+.. .+. .+...+..+..|. +++++.. -+.|= ..++++||+|.+..
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~ 358 (410)
T 2j0s_A 279 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRE 358 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHH
T ss_pred EEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHH
Confidence 44454 4467778888898888754 122 2334455555553 3332222 22332 12789999999999
Q ss_pred HHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChH
Q psy7691 105 DYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151 (165)
Q Consensus 105 ~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~ 151 (165)
+|+||+||+||.|+.|.+++++.+.+...+..+.+++.....++|..
T Consensus 359 ~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 359 LYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp HHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred HHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 99999999999999999999999999999999999998888888754
No 54
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.65 E-value=2.7e-08 Score=84.47 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=58.0
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
.|+++|.++++.++.|.|++++++||+|||++++ +| .++.+.+... ..+..+++++|+ ++++.|..+.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~---~~-----~~~~~~~~~~--~~~~~~lil~P~-~~L~~q~~~~~ 72 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSL---LI-----CEHHLKKFPC--GQKGKVVFFANQ-IPVYEQQATVF 72 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH---HH-----HHHHHHTCCS--SCCCCEEEECSS-HHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHH---HH-----HHHHHHhccc--CCCCEEEEEeCC-HHHHHHHHHHH
Confidence 4899999999999999999999999999999988 77 6666644211 234568899999 88888877776
Q ss_pred Hhc
Q psy7691 142 TEA 144 (165)
Q Consensus 142 ~~~ 144 (165)
...
T Consensus 73 ~~~ 75 (555)
T 3tbk_A 73 SRY 75 (555)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 55
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.65 E-value=1.3e-08 Score=92.52 Aligned_cols=109 Identities=22% Similarity=0.349 Sum_probs=75.9
Q ss_pred hHhhcCCHHHH----HHHHhhcCcEEecCCCCCCccccccCCCcHHHH---HHH-HhCCCCCCchHHHHHHHHHHcCCCe
Q psy7691 9 ERAARLSESEV----EAFRQKKEITVKGNNIPCPTQELTEGCFPNAVL---QHL-KGQGFEEPTAIQAQGWPIALSGRDM 80 (165)
Q Consensus 9 ~~~~~~~~~~~----~~~~~~~~i~~~~~~~p~~i~~f~~l~l~~~l~---~~l-~~~g~~~~t~~Q~~a~~~~l~G~di 80 (165)
+.+..+|++++ .+|++.....+.|. ++.++ +++... ++. ...|+ .||++|..++|.++.|.
T Consensus 59 ~~~~~Lsd~eL~~kt~efk~rl~~~~~ge-------~ld~~-lpeafA~vrEa~~R~lG~-rP~~VQ~~~ip~Ll~G~-- 127 (922)
T 1nkt_A 59 DDVEKLTDAELRAKTDEFKRRLADQKNPE-------TLDDL-LPEAFAVAREAAWRVLDQ-RPFDVQVMGAAALHLGN-- 127 (922)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHCSSSCC-------CHHHH-HHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTE--
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcccCC-------CHHHH-HHHHHHHHHHHHHHHcCC-CCCHHHHHHHHhHhcCC--
Confidence 56788899888 67775543211121 12222 333221 222 33688 79999999999999998
Q ss_pred eeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 81 VGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 81 ~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
++.++||+|||++|. ||. |++.+. |..+.+++|+ +.++.|+.+.+...
T Consensus 128 Iaem~TGeGKTLa~~---LP~----~l~aL~--------g~~v~VvTpT-reLA~Qdae~m~~l 175 (922)
T 1nkt_A 128 VAEMKTGEGKTLTCV---LPA----YLNALA--------GNGVHIVTVN-DYLAKRDSEWMGRV 175 (922)
T ss_dssp EEECCTTSCHHHHTH---HHH----HHHHTT--------TSCEEEEESS-HHHHHHHHHHHHHH
T ss_pred EEEecCCCccHHHHH---HHH----HHHHHh--------CCCeEEEeCC-HHHHHHHHHHHHHH
Confidence 899999999999999 883 455541 3468999999 88998888777653
No 56
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.64 E-value=5.3e-09 Score=97.55 Aligned_cols=91 Identities=11% Similarity=0.019 Sum_probs=73.2
Q ss_pred cccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCC
Q psy7691 40 QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASS 119 (165)
Q Consensus 40 ~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~ 119 (165)
..|..+.+++.+...+...++-.++++|.+|++.++.|.|++++++||||||+++. +| .++.+. .
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~---l~-----i~~~l~-------~ 226 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAE---YA-----IAQSLK-------N 226 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHH---HH-----HHHHHH-------T
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHH---HH-----HHHHHh-------c
Confidence 35666777777777776666667999999999999999999999999999999887 67 555542 2
Q ss_pred CceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 120 GTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 120 g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
|..+++++|+ +.++.|+.+.+.....
T Consensus 227 g~rvlvl~Pt-raLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 227 KQRVIYTSPI-KALSNQKYRELLAEFG 252 (1108)
T ss_dssp TCEEEEEESS-HHHHHHHHHHHHHHTS
T ss_pred CCeEEEEcCc-HHHHHHHHHHHHHHhC
Confidence 4468889998 9999998888877544
No 57
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.63 E-value=3.1e-08 Score=84.30 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=57.2
Q ss_pred CCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 59 g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
+.-.|+++|.++++.++.|.|++++++||+|||++++ +| .++.+.+... ..+..+++++|+ ++++.|..
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~---~~-----~~~~~~~~~~--~~~~~~lil~P~-~~L~~q~~ 72 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSI---LI-----CEHHFQNMPA--GRKAKVVFLATK-VPVYEQQK 72 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH---HH-----HHHHHHTCCS--SCCCCEEEECSS-HHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH---HH-----HHHHHHhCcc--cCCCeEEEEeCC-HHHHHHHH
Confidence 3446999999999999999999999999999999988 77 6666644211 224568899998 88888877
Q ss_pred HHHHhc
Q psy7691 139 AVLTEA 144 (165)
Q Consensus 139 ~~l~~~ 144 (165)
+.+...
T Consensus 73 ~~~~~~ 78 (556)
T 4a2p_A 73 NVFKHH 78 (556)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 58
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.62 E-value=1e-09 Score=96.72 Aligned_cols=86 Identities=12% Similarity=-0.017 Sum_probs=63.9
Q ss_pred cccc-CCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCC
Q psy7691 41 ELTE-GCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASS 119 (165)
Q Consensus 41 ~f~~-l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~ 119 (165)
.|.. +.+++.+.++|... .+.++|+|+.+++.++.|+|++++++||||||++|. +| +++++.. .
T Consensus 150 ~~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~---lp-----il~~l~~------~ 214 (618)
T 2whx_A 150 YGNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRIL---PS-----IVREALK------R 214 (618)
T ss_dssp CCC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHH---HH-----HHHHHHH------T
T ss_pred cccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHH---HH-----HHHHHHh------C
Confidence 3444 55666666666543 588999998899999999999999999999999988 78 7877643 3
Q ss_pred CceEEEECCCcHHHHHHHHHHHH
Q psy7691 120 GTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 120 g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
+..+++++|+ ++++.|+.+.+.
T Consensus 215 ~~~vLvl~Pt-reLa~Qi~~~l~ 236 (618)
T 2whx_A 215 RLRTLILAPT-RVVAAEMEEALR 236 (618)
T ss_dssp TCCEEEEESS-HHHHHHHHHHTT
T ss_pred CCeEEEEcCh-HHHHHHHHHHhc
Confidence 4578888898 999999998875
No 59
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.60 E-value=9.9e-09 Score=84.18 Aligned_cols=116 Identities=21% Similarity=0.334 Sum_probs=84.6
Q ss_pred ccccc-cCCCcHHHHHHHHhCCCCC------Cc-hHHHHHHHHHHcCC-Ceeeecc-cCCcccc----eeeecCCCCChh
Q psy7691 39 TQELT-EGCFPNAVLQHLKGQGFEE------PT-AIQAQGWPIALSGR-DMVGIAQ-TGSGKTL----AVINFDYPNSSE 104 (165)
Q Consensus 39 i~~f~-~l~l~~~l~~~l~~~g~~~------~t-~~Q~~a~~~~l~G~-di~~~a~-tgsGKt~----~~~~~~lP~~~~ 104 (165)
++.|. .....+.+.+.|.+.|+.. .+ ..+...+..+..|. +++++.. -+.|=.+ .+++||+|.+..
T Consensus 261 ~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~ 340 (400)
T 1s2m_A 261 AIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAE 340 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHH
T ss_pred EEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHH
Confidence 44444 4466778888888776642 22 33445566666664 4443332 2334222 689999999999
Q ss_pred HHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCChHHHH
Q psy7691 105 DYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQD 154 (165)
Q Consensus 105 ~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p~~~~~ 154 (165)
+|+||+||+||.|+.|.+++++.+.+...+.++.+.+.....++|.++.+
T Consensus 341 ~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 341 TYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp HHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred HHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccc
Confidence 99999999999999999999999999999999999998888888766544
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.60 E-value=5.8e-09 Score=88.34 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=57.0
Q ss_pred CCCCCchHHHHHHHHHHcCCCe-eeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 59 GFEEPTAIQAQGWPIALSGRDM-VGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 59 g~~~~t~~Q~~a~~~~l~G~di-~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
|+..|+++|+ ++|.++.|.|+ +++++||||||++|+ +| ++++... .|..++++.|+ ++++.|+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~---~~-----~l~~~~~------~~~~~lvl~Pt-r~La~Q~ 64 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRIL---PS-----IVREALL------RRLRTLILAPT-RVVAAEM 64 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHH---HH-----HHHHHHH------TTCCEEEEESS-HHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHH---HH-----HHHHHHh------cCCcEEEECCC-HHHHHHH
Confidence 7889999985 79999999998 899999999999988 78 6666533 34568888898 9999999
Q ss_pred HHHHH
Q psy7691 138 IAVLT 142 (165)
Q Consensus 138 ~~~l~ 142 (165)
.+.+.
T Consensus 65 ~~~l~ 69 (451)
T 2jlq_A 65 EEALR 69 (451)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 98874
No 61
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.58 E-value=4.9e-08 Score=87.92 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=57.6
Q ss_pred hCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHH
Q psy7691 57 GQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKE 136 (165)
Q Consensus 57 ~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~ 136 (165)
.+|+..|+++|.++++.++.|.|++++++||+|||++++ +| .++.+.+. . ...+..+++++|+ +.++.|
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~---~~-----i~~~l~~~-~-~~~~~~~Lvl~Pt-~~L~~Q 311 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSI---LI-----CEHHFQNM-P-AGRKAKVVFLATK-VPVYEQ 311 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH---HH-----HHHHHHTC-C-SSCCCCEEEECSS-HHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHH---HH-----HHHHHHhc-c-ccCCCeEEEEeCC-HHHHHH
Confidence 457889999999999999999999999999999999988 77 66666442 1 1224568899998 788887
Q ss_pred HHHHHHhc
Q psy7691 137 LIAVLTEA 144 (165)
Q Consensus 137 i~~~l~~~ 144 (165)
..+.+...
T Consensus 312 ~~~~~~~~ 319 (797)
T 4a2q_A 312 QKNVFKHH 319 (797)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76666553
No 62
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.56 E-value=1.6e-08 Score=91.39 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=72.6
Q ss_pred hHhhcCCHHHHHHHHhhcCcEEecCCCCCCccccccCCCcHHHHHHHHh-----CCCCCCchHHHHHHHHHHcCCCeeee
Q psy7691 9 ERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKG-----QGFEEPTAIQAQGWPIALSGRDMVGI 83 (165)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~-----~g~~~~t~~Q~~a~~~~l~G~di~~~ 83 (165)
+.+..+|++++...-...+....... .+.++ ++ +....+.+ .|. .||++|..++|.++.|. ++.
T Consensus 25 ~~~~~lsd~eL~~kt~~fk~rl~~g~------~ld~~-lp-eafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iae 93 (853)
T 2fsf_A 25 PEMEKLSDEELKGKTAEFRARLEKGE------VLENL-IP-EAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IAE 93 (853)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTC------CHHHH-HH-HHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EEE
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHcCC------Chhhh-hH-HHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--eee
Confidence 45777888877654433332222211 12221 22 22222222 465 69999999999999998 899
Q ss_pred cccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 84 AQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 84 a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
++||+|||++|. +| .+...- .|..+++++|+ ++++.|+.+.+...
T Consensus 94 m~TGsGKTlaf~---LP-----~l~~~l-------~g~~vlVltPT-reLA~Q~~e~~~~l 138 (853)
T 2fsf_A 94 MRTGEGKTLTAT---LP-----AYLNAL-------TGKGVHVVTVN-DYLAQRDAENNRPL 138 (853)
T ss_dssp CCTTSCHHHHHH---HH-----HHHHHT-------TSSCCEEEESS-HHHHHHHHHHHHHH
T ss_pred ecCCchHHHHHH---HH-----HHHHHH-------cCCcEEEEcCC-HHHHHHHHHHHHHH
Confidence 999999999999 89 443321 23468999999 99999888877654
No 63
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.56 E-value=2.8e-08 Score=85.50 Aligned_cols=52 Identities=29% Similarity=0.479 Sum_probs=47.1
Q ss_pred eeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
+|++||+|.+.++|+||+||+||.|+.|.+++++.+.+...+..+.+.....
T Consensus 413 ~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~ 464 (563)
T 3i5x_A 413 EVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIV 464 (563)
T ss_dssp EEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCC
T ss_pred EEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCC
Confidence 7999999999999999999999999999999999999888888887765533
No 64
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.53 E-value=2.7e-08 Score=74.74 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=54.1
Q ss_pred CCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHH-
Q psy7691 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKE- 136 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~- 136 (165)
.....+++.|.++++.++.|.++++.++||+|||++++ +| ..+.+.+..+. ..+..+++++|+ +.++.|
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~---~~-----~~~~~~~~~~~-~~~~~~lil~p~-~~L~~q~ 98 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAV---YI-----AKDHLDKKKKA-SEPGKVIVLVNK-VLLVEQL 98 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH---HH-----HHHHHHHHHHT-TCCCCEEEEESS-HHHHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHH---HH-----HHHHHhhcccc-cCCCcEEEEECH-HHHHHHH
Confidence 34456999999999999999999999999999999887 55 33333221111 234467888888 777777
Q ss_pred HHHHHHh
Q psy7691 137 LIAVLTE 143 (165)
Q Consensus 137 i~~~l~~ 143 (165)
+.+.+..
T Consensus 99 ~~~~~~~ 105 (216)
T 3b6e_A 99 FRKEFQP 105 (216)
T ss_dssp HHHTHHH
T ss_pred HHHHHHH
Confidence 5554443
No 65
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.53 E-value=4.1e-08 Score=85.25 Aligned_cols=51 Identities=29% Similarity=0.488 Sum_probs=46.6
Q ss_pred eeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
+|++||+|.+.++|+||+||+||.|+.|.+++++.+.+...+..+.+....
T Consensus 362 ~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 412 (579)
T 3sqw_A 362 EVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 412 (579)
T ss_dssp EEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred EEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCC
Confidence 799999999999999999999999999999999999988888888776543
No 66
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.51 E-value=1.2e-08 Score=83.18 Aligned_cols=77 Identities=31% Similarity=0.553 Sum_probs=0.0
Q ss_pred HHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCC
Q psy7691 70 GWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149 (165)
Q Consensus 70 a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p 149 (165)
|+..+.+|.|+..+. .+++||+|.+..+|+||+||+||.|..|.+++++.+.+...+..+.+++.....++|
T Consensus 315 ~T~~~~~Gldi~~~~--------~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (394)
T 1fuu_A 315 STDLLARGIDVQQVS--------LVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 386 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECChhhcCCCcccCC--------EEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccC
Confidence 444455666666555 789999999999999999999999999999999999988889999999888888888
Q ss_pred hHHHH
Q psy7691 150 PQLQD 154 (165)
Q Consensus 150 ~~~~~ 154 (165)
..+.+
T Consensus 387 ~~~~~ 391 (394)
T 1fuu_A 387 SDIAT 391 (394)
T ss_dssp -----
T ss_pred cchhh
Confidence 76544
No 67
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.51 E-value=8e-08 Score=77.26 Aligned_cols=111 Identities=19% Similarity=0.304 Sum_probs=79.0
Q ss_pred cccc-ccCCCcHHHHHHHHhCCCCC------Cc-hHHHHHHHHHHcCC-Ceeeeccc-CCcc----cceeeecCCCCChh
Q psy7691 39 TQEL-TEGCFPNAVLQHLKGQGFEE------PT-AIQAQGWPIALSGR-DMVGIAQT-GSGK----TLAVINFDYPNSSE 104 (165)
Q Consensus 39 i~~f-~~l~l~~~l~~~l~~~g~~~------~t-~~Q~~a~~~~l~G~-di~~~a~t-gsGK----t~~~~~~~lP~~~~ 104 (165)
+..| ........+.+.|.+.|+.. .+ ..+...+..+..|. +++++... +.|= ...+++|++|.+..
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~ 320 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPE 320 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHH
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHH
Confidence 3444 44567778888888877643 12 23444555555553 34333221 1221 22789999999999
Q ss_pred HHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcCCCCC
Q psy7691 105 DYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149 (165)
Q Consensus 105 ~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~~~~p 149 (165)
+|+||+||++|.|+.|.+++++.+.+......+.+.+.....+++
T Consensus 321 ~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 321 SYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp HHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred HhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999999999999999998887766654
No 68
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.50 E-value=3.8e-08 Score=89.07 Aligned_cols=107 Identities=20% Similarity=0.162 Sum_probs=68.8
Q ss_pred CCcccccc-CCCcHHHHHHHHhCCCCCCc----hHHHHH---------------HHHHHcCCCeeeec-ccCCcccceee
Q psy7691 37 CPTQELTE-GCFPNAVLQHLKGQGFEEPT----AIQAQG---------------WPIALSGRDMVGIA-QTGSGKTLAVI 95 (165)
Q Consensus 37 ~~i~~f~~-l~l~~~l~~~l~~~g~~~~t----~~Q~~a---------------~~~~l~G~di~~~a-~tgsGKt~~~~ 95 (165)
.|++.|.. ..-++.+.+.|...|+..-. -.|.++ ++.+.||.||.... .-..| -++||
T Consensus 433 ~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATdmAgRG~DI~l~~~V~~~g-gl~VI 511 (844)
T 1tf5_A 433 QPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEGVKELG-GLAVV 511 (844)
T ss_dssp CCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEETTSSTTCCCCCCTTSGGGT-SEEEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCCccccCcCccccchhhhcC-CcEEE
Confidence 35556654 46788888889999986521 123333 22223444432000 00001 23899
Q ss_pred ecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHH----HHHHHHHHHHhc
Q psy7691 96 NFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGK----QAKELIAVLTEA 144 (165)
Q Consensus 96 ~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~----~~~~i~~~l~~~ 144 (165)
|||+|.+...|+||+|||||+|..|.+++|+++.+.- ....+...+...
T Consensus 512 n~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~r~f~~~~~~~~~~~~ 564 (844)
T 1tf5_A 512 GTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTMAMLDRF 564 (844)
T ss_dssp ESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHHHHHHHhHHHHHHHHHhc
Confidence 9999999999999999999999999999999988731 123455555543
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.47 E-value=1.5e-07 Score=91.02 Aligned_cols=88 Identities=19% Similarity=0.325 Sum_probs=67.6
Q ss_pred CcHHHHHHHHhCCCCCCchHHHHHHHHHH-cCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCC----CCCCCCc
Q psy7691 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIAL-SGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTG----RCASSGT 121 (165)
Q Consensus 47 l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l-~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~----r~~~~g~ 121 (165)
|++.....+ .||+.++++|.+++|.++ .+.|++++||||||||+++. +| .++++.+.. .....+.
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~---l~-----il~~l~~~~~~~~~~~~~~~ 135 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVAL---MC-----MLREIGKHINMDGTINVDDF 135 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHH---HH-----HHHHHGGGCCTTSSCCTTSC
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHH---HH-----HHHHHHhhccccccccCCCC
Confidence 555443333 289999999999999887 56899999999999999887 77 777775432 2234567
Q ss_pred eEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 122 AYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 122 ~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
.+++++|+ +.++.++.+.+....
T Consensus 136 k~lyiaP~-kALa~e~~~~l~~~~ 158 (1724)
T 4f92_B 136 KIIYIAPM-RSLVQEMVGSFGKRL 158 (1724)
T ss_dssp EEEEECSS-HHHHHHHHHHHHHHH
T ss_pred EEEEECCH-HHHHHHHHHHHHHHH
Confidence 89999999 899998888776543
No 70
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.47 E-value=1.2e-07 Score=85.74 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=63.7
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHcC------CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCce
Q psy7691 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSG------RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTA 122 (165)
Q Consensus 49 ~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G------~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~ 122 (165)
+.+.+.+...+| .+|++|.++++.++.+ +|++++++||||||++++ +| .++.+. .|..
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlval---l~-----il~~l~-------~g~q 419 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQ---LA-----ILDNYE-------AGFQ 419 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHH---HH-----HHHHHH-------HTSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHH---HH-----HHHHHH-------cCCe
Confidence 445555678899 7999999999999876 699999999999999988 77 555552 2356
Q ss_pred EEEECCCcHHHHHHHHHHHHhcC
Q psy7691 123 YTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 123 ~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
+++++|+ +.++.|+.+.+....
T Consensus 420 vlvlaPt-r~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 420 TAFMVPT-SILAIQHYRRTVESF 441 (780)
T ss_dssp EEEECSC-HHHHHHHHHHHHHHH
T ss_pred EEEEeCc-HHHHHHHHHHHHHHh
Confidence 8899999 888888887776543
No 71
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.46 E-value=1.7e-07 Score=90.72 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=67.1
Q ss_pred CCcHHHHHHHHhCCCCCCchHHHHHHHHHHcC-CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEE
Q psy7691 46 CFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYT 124 (165)
Q Consensus 46 ~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~ 124 (165)
.+.....+++...+|..++|+|.++++.++.+ .|++++||||||||+++. +| .++.+-+. .+..++
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliae---la-----il~~l~~~-----~~~kav 976 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAE---FA-----ILRMLLQS-----SEGRCV 976 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHH---HH-----HHHHHHHC-----TTCCEE
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHH---HH-----HHHHHHhC-----CCCEEE
Confidence 35567788888889999999999999999765 679999999999999877 77 66666431 233578
Q ss_pred EECCCcHHHHHHHHHHHHh
Q psy7691 125 FFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 125 ~~~p~~~~~~~~i~~~l~~ 143 (165)
+++|+ ++++.|+.+.+..
T Consensus 977 yi~P~-raLa~q~~~~~~~ 994 (1724)
T 4f92_B 977 YITPM-EALAEQVYMDWYE 994 (1724)
T ss_dssp EECSC-HHHHHHHHHHHHH
T ss_pred EEcCh-HHHHHHHHHHHHH
Confidence 99999 8888888776654
No 72
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.45 E-value=7.7e-08 Score=78.78 Aligned_cols=114 Identities=20% Similarity=0.287 Sum_probs=77.4
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCCC-------CchHHHHHHHHHHcCC-Ceeeeccc-CCccc----ceeeecCCC---
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFEE-------PTAIQAQGWPIALSGR-DMVGIAQT-GSGKT----LAVINFDYP--- 100 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~~-------~t~~Q~~a~~~~l~G~-di~~~a~t-gsGKt----~~~~~~~lP--- 100 (165)
.++.|. .......+.+.|.+.|+.. +...+...+..+..|. +++++... +.|=. -.|++||+|
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~ 347 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK 347 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCS
T ss_pred CEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCC
Confidence 344554 4467788888888887643 2223444555555553 34332222 23322 268999999
Q ss_pred ---CChhHHHHhhccCCCCCCCCceEEEECCCc-HHHHHHHHHHHHhcCCCCChH
Q psy7691 101 ---NSSEDYIHRIGRTGRCASSGTAYTFFTPNN-GKQAKELIAVLTEASQPIPPQ 151 (165)
Q Consensus 101 ---~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~-~~~~~~i~~~l~~~~~~~p~~ 151 (165)
.+..+|+||+||+||.|..|.+++++.+.+ ...+..+.+.+.....+++..
T Consensus 348 ~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 402 (412)
T 3fht_A 348 DGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 402 (412)
T ss_dssp SSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC---
T ss_pred CCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCc
Confidence 467899999999999999999999999875 677888888888887777543
No 73
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.45 E-value=1.6e-07 Score=86.13 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=57.0
Q ss_pred HHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHH
Q psy7691 55 LKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA 134 (165)
Q Consensus 55 l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~ 134 (165)
..-.|+..|+++|.++++.++.|.|++++++||+|||++++ +| .++.+.+. .. ..+..+++++|+ +.++
T Consensus 241 ~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~---~~-----i~~~l~~~-~~-~~~~~vLvl~Pt-~~L~ 309 (936)
T 4a2w_A 241 PPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSI---LI-----CEHHFQNM-PA-GRKAKVVFLATK-VPVY 309 (936)
T ss_dssp -------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH---HH-----HHTTTTTC-CS-SCCCCEEEECSS-HHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHH---HH-----HHHHHHhc-cc-cCCCeEEEEeCC-HHHH
Confidence 34457888999999999999999999999999999999988 77 66655442 11 224568899998 7788
Q ss_pred HHHHHHHHhc
Q psy7691 135 KELIAVLTEA 144 (165)
Q Consensus 135 ~~i~~~l~~~ 144 (165)
.|..+.+...
T Consensus 310 ~Q~~~~~~~~ 319 (936)
T 4a2w_A 310 EQQKNVFKHH 319 (936)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666553
No 74
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.43 E-value=2.5e-08 Score=84.28 Aligned_cols=73 Identities=27% Similarity=0.466 Sum_probs=0.0
Q ss_pred HHHHHHcCCCeeeecccCCcccceeeecCCCC------ChhHHHHhhccCCCCCCCCceEEEECCCc-HHHHHHHHHHHH
Q psy7691 70 GWPIALSGRDMVGIAQTGSGKTLAVINFDYPN------SSEDYIHRIGRTGRCASSGTAYTFFTPNN-GKQAKELIAVLT 142 (165)
Q Consensus 70 a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~------~~~~~i~r~gr~~r~~~~g~~~~~~~p~~-~~~~~~i~~~l~ 142 (165)
|+..+.+|.|+..+. .|++||+|. +..+|+||+||+||.|+.|.+++++.+.+ ...+..+.+.+.
T Consensus 389 ~T~~~~~GlDip~v~--------~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~ 460 (479)
T 3fmp_B 389 TTNVCARGIDVEQVS--------VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 460 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EccccccCCccccCC--------EEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhC
Confidence 556667777877776 799999994 56799999999999999999999999875 567778888887
Q ss_pred hcCCCCCh
Q psy7691 143 EASQPIPP 150 (165)
Q Consensus 143 ~~~~~~p~ 150 (165)
....+++.
T Consensus 461 ~~~~~l~~ 468 (479)
T 3fmp_B 461 KKIERLDT 468 (479)
T ss_dssp --------
T ss_pred CCceECCC
Confidence 77766653
No 75
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.42 E-value=5.6e-08 Score=79.17 Aligned_cols=114 Identities=22% Similarity=0.318 Sum_probs=80.7
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCCC-------CchHHHHHHHHHHcCC-Ceeeeccc-CCcc----cceeeecCCCCCh
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFEE-------PTAIQAQGWPIALSGR-DMVGIAQT-GSGK----TLAVINFDYPNSS 103 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~~-------~t~~Q~~a~~~~l~G~-di~~~a~t-gsGK----t~~~~~~~lP~~~ 103 (165)
.++.|. .......+.+.|...|+.. +...+...+..+..|. +++++... +.|= .-.+++||+|.+.
T Consensus 252 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 331 (391)
T 1xti_A 252 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDS 331 (391)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSH
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCH
Confidence 344444 4567778888888887643 1223445555566653 34433322 2342 2368999999999
Q ss_pred hHHHHhhccCCCCCCCCceEEEECCCc-HHHHHHHHHHHHhcCCCCChH
Q psy7691 104 EDYIHRIGRTGRCASSGTAYTFFTPNN-GKQAKELIAVLTEASQPIPPQ 151 (165)
Q Consensus 104 ~~~i~r~gr~~r~~~~g~~~~~~~p~~-~~~~~~i~~~l~~~~~~~p~~ 151 (165)
.+|+||+||+||.|..|.+++++.+.+ ......+.+.+.....++|.+
T Consensus 332 ~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 332 DTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp HHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred HHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999999999999999999874 466788888888888888765
No 76
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.41 E-value=5e-09 Score=93.23 Aligned_cols=76 Identities=22% Similarity=0.183 Sum_probs=59.5
Q ss_pred HHHhCCCC-----CCchHHH-----HHHHHHH------cCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCC
Q psy7691 54 HLKGQGFE-----EPTAIQA-----QGWPIAL------SGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCA 117 (165)
Q Consensus 54 ~l~~~g~~-----~~t~~Q~-----~a~~~~l------~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~ 117 (165)
.|..+||. .||++|. ++||.++ .|+|++++++||||||++|+ +| +++++..
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~l---l~-----il~~l~~----- 268 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRIL---PQ-----IIKDAIQ----- 268 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHH---HH-----HHHHHHH-----
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHH---HH-----HHHHHHh-----
Confidence 45566777 8999999 9999888 89999999999999999987 77 7766533
Q ss_pred CCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 118 SSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 118 ~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
.+..+++++|+ ++++.|+.+.+...
T Consensus 269 -~~~~~lilaPT-r~La~Q~~~~l~~~ 293 (673)
T 2wv9_A 269 -KRLRTAVLAPT-RVVAAEMAEALRGL 293 (673)
T ss_dssp -TTCCEEEEESS-HHHHHHHHHHTTTS
T ss_pred -CCCcEEEEccH-HHHHHHHHHHHhcC
Confidence 34568888898 99999999887643
No 77
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.38 E-value=1.5e-07 Score=85.72 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=57.5
Q ss_pred hCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHH
Q psy7691 57 GQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKE 136 (165)
Q Consensus 57 ~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~ 136 (165)
..|+ .||++|..++|.++.|. ++.++||+|||+++. +|. |++.+ .|..+.+++|+ +.++.|
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~---Lp~----~L~aL--------~G~qv~VvTPT-reLA~Q 135 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVAT---LAV----ALNAL--------TGKGVHVVTVN-DYLARR 135 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHH---HHH----HHHHT--------TCSCCEEEESS-HHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHH---HHH----HHHHH--------hCCCEEEEeCC-HHHHHH
Confidence 3799 79999999999999997 899999999999998 883 45554 13368899999 899998
Q ss_pred HHHHHHhc
Q psy7691 137 LIAVLTEA 144 (165)
Q Consensus 137 i~~~l~~~ 144 (165)
..+.+...
T Consensus 136 dae~m~~l 143 (997)
T 2ipc_A 136 DAEWMGPV 143 (997)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877664
No 78
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.37 E-value=2.3e-07 Score=73.80 Aligned_cols=61 Identities=44% Similarity=0.605 Sum_probs=47.3
Q ss_pred HHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHH
Q psy7691 73 IALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 73 ~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
.+.+|.|+..+. .+++|+.|.+..+|+||+||+||.|..|.+++++. .+......+.+.+.
T Consensus 275 ~~~~Gid~~~~~--------~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 275 VASRGLDIPLVE--------KVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHTTCCCCCBS--------EEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred ccccCCCccCCC--------EEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 344555554444 79999999999999999999999999999999999 66777777776654
No 79
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.36 E-value=2.4e-07 Score=71.53 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=53.4
Q ss_pred CCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHH
Q psy7691 61 EEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAV 140 (165)
Q Consensus 61 ~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~ 140 (165)
-..+++|.++++.+..|.+++++|+||||||.++. +| .++..-..++ ..+..++++.|+ +.++.++.+.
T Consensus 60 ~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~---~~-----~~~~~~~~~~--~~~~~~l~~~p~-~~la~q~~~~ 128 (235)
T 3llm_A 60 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVP---QF-----ILDDFIQNDR--AAECNIVVTQPR-RISAVSVAER 128 (235)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHH---HH-----HHHHHHHTTC--GGGCEEEEEESS-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHH---HH-----HhcchhhcCC--CCceEEEEeccc-hHHHHHHHHH
Confidence 34688999999999999999999999999998766 44 3333322222 234467778887 8888888777
Q ss_pred HHh
Q psy7691 141 LTE 143 (165)
Q Consensus 141 l~~ 143 (165)
+..
T Consensus 129 ~~~ 131 (235)
T 3llm_A 129 VAF 131 (235)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 80
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.32 E-value=3.2e-07 Score=82.74 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=68.3
Q ss_pred CCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcC-CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCC
Q psy7691 37 CPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGR 115 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r 115 (165)
.++..|+.+++++.+.+.+...+ ..|+++|.++++.++.+ .+++++++||+|||.. +|. ++...+..
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl-----lp~----ll~~~~~~-- 136 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ-----IPQ----FVLFDEMP-- 136 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH-----HHH----HHHHHHCG--
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-----HHH----HHHHhccc--
Confidence 35778999999999999999988 67999999999988765 5799999999999993 451 22222111
Q ss_pred CCCCCceEEEECCCcHHHHHHHHHHHH
Q psy7691 116 CASSGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 116 ~~~~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
...|..++++.|+ +.++.++.+.+.
T Consensus 137 -~~~g~~ilvl~P~-r~La~q~~~~l~ 161 (773)
T 2xau_A 137 -HLENTQVACTQPR-RVAAMSVAQRVA 161 (773)
T ss_dssp -GGGTCEEEEEESC-HHHHHHHHHHHH
T ss_pred -cCCCceEEecCch-HHHHHHHHHHHH
Confidence 1124567778887 888887776553
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.28 E-value=4.4e-07 Score=81.34 Aligned_cols=107 Identities=18% Similarity=0.133 Sum_probs=70.4
Q ss_pred CCcccccc-CCCcHHHHHHHHhCCCCCCc----hHHHHH---------------HHHHHcCCCeeee-cccCCcccceee
Q psy7691 37 CPTQELTE-GCFPNAVLQHLKGQGFEEPT----AIQAQG---------------WPIALSGRDMVGI-AQTGSGKTLAVI 95 (165)
Q Consensus 37 ~~i~~f~~-l~l~~~l~~~l~~~g~~~~t----~~Q~~a---------------~~~~l~G~di~~~-a~tgsGKt~~~~ 95 (165)
.|++.|.. ..-++.+.+.|.+.|+..-. -.|.++ ++.+.||.||..- .-..-| -++|+
T Consensus 475 qpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATdmAgRGtDI~lg~~V~~~G-glhVI 553 (822)
T 3jux_A 475 QPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLGPGVAELG-GLCII 553 (822)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEETTTTTTCCCCCCTTTTTTT-SCEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcchhhCCcCccCCcchhhcC-CCEEE
Confidence 45666654 46788888889998886421 122222 2233344554200 000001 13899
Q ss_pred ecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHH----HHHHHHHHHhc
Q psy7691 96 NFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ----AKELIAVLTEA 144 (165)
Q Consensus 96 ~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~----~~~i~~~l~~~ 144 (165)
||++|.+...|+||+||+||+|..|.+++|+++.+.-+ ...+..++...
T Consensus 554 nte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~ 606 (822)
T 3jux_A 554 GTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNIL 606 (822)
T ss_dssp ESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHS
T ss_pred ecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHc
Confidence 99999999999999999999999999999999987332 34666666554
No 82
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.27 E-value=2.3e-07 Score=76.80 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=72.8
Q ss_pred CCcccccc-CCCcHHHHHHHHhCCCCCC---chHHHHHHHHHHcCC-Ceeee----cc-cCCc----c-cceeeecCCC-
Q psy7691 37 CPTQELTE-GCFPNAVLQHLKGQGFEEP---TAIQAQGWPIALSGR-DMVGI----AQ-TGSG----K-TLAVINFDYP- 100 (165)
Q Consensus 37 ~~i~~f~~-l~l~~~l~~~l~~~g~~~~---t~~Q~~a~~~~l~G~-di~~~----a~-tgsG----K-t~~~~~~~lP- 100 (165)
.+++.|.. ..-.+.+.+.|...|+... ..-+.+ +..+..|. +++++ .. -+.| . .-+|++||+|
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~r~-~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~ 331 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 331 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCHHHH-HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCT
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCceehhhcCcchH-HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCC
Confidence 34455544 4677888888988887653 122444 66676663 55555 11 1233 1 3479999999
Q ss_pred -CChhHHHHhhccCCCCC----CCCceEEEECCCcHHHHHHHHHHHH
Q psy7691 101 -NSSEDYIHRIGRTGRCA----SSGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 101 -~~~~~~i~r~gr~~r~~----~~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
.+..+|+||+||+||.| +.|.+++++ .+...+..+.+.+.
T Consensus 332 ~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 332 GPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp TTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 89999999999999998 478788777 66788888888888
No 83
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.26 E-value=5.5e-07 Score=83.40 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=58.3
Q ss_pred HhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHH
Q psy7691 56 KGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAK 135 (165)
Q Consensus 56 ~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~ 135 (165)
...+|. ++++|.+|++.+..|.+++++++||+|||+++. +| ..+.+. .|..+++++|+ +.++.
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~---la-----i~~~l~-------~g~rvL~l~Pt-kaLa~ 143 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAE---YA-----IAQSLK-------NKQRVIYTSPI-KALSN 143 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHH---HH-----HHHHHH-------TTCEEEEEESS-HHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHH---HH-----HHHHhc-------cCCeEEEECCh-HHHHH
Confidence 445886 999999999999999999999999999999876 55 444442 23578899998 88888
Q ss_pred HHHHHHHhc
Q psy7691 136 ELIAVLTEA 144 (165)
Q Consensus 136 ~i~~~l~~~ 144 (165)
|..+.+...
T Consensus 144 Q~~~~l~~~ 152 (1010)
T 2xgj_A 144 QKYRELLAE 152 (1010)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777653
No 84
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.23 E-value=6.7e-07 Score=70.71 Aligned_cols=109 Identities=11% Similarity=0.040 Sum_probs=69.2
Q ss_pred HHHHHHHhhcCcEEecCCCCCCccccccCCCc-HHHHHHHHhCCC------CCCchHHHHHHHHHHcCCCeeeecccCCc
Q psy7691 17 SEVEAFRQKKEITVKGNNIPCPTQELTEGCFP-NAVLQHLKGQGF------EEPTAIQAQGWPIALSGRDMVGIAQTGSG 89 (165)
Q Consensus 17 ~~~~~~~~~~~i~~~~~~~p~~i~~f~~l~l~-~~l~~~l~~~g~------~~~t~~Q~~a~~~~l~G~di~~~a~tgsG 89 (165)
+++..+.+.+++.+...+...+... +. ...-+++....+ -.++++|.++++.++.+.+.+++++||+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~~~~~~~~~~~~l~~~Q~~ai~~~l~~~~~ll~~~tGsG 140 (282)
T 1rif_A 66 GQIKKFCDNFGYKAWIDPQINEKEE-----LSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAG 140 (282)
T ss_dssp GGHHHHHHHTTCCEEECGGGGCCCC-----CCHHHHHHHHHTCCCEETTEECCCCHHHHHHHHHHHHHSEEEECCCTTSC
T ss_pred HHHHHHHHhcCCeeEecCccCCCCC-----CCHHHHHhHHhHHHHhcCCCccCccHHHHHHHHHHHhcCCeEEEcCCCCC
Confidence 4555555666665554332222111 22 233334443444 26899999999999888888889999999
Q ss_pred ccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhcC
Q psy7691 90 KTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 90 Kt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~~ 145 (165)
||.+++ ++ ..+.+.+ .+..+++++|+ +.++.|..+.+..-.
T Consensus 141 KT~~~~---~~-----~~~~~~~------~~~~~lil~Pt-~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 141 RSLIQA---LL-----ARYYLEN------YEGKILIIVPT-TALTTQMADDFVDYR 181 (282)
T ss_dssp HHHHHH---HH-----HHHHHHH------CSSEEEEECSS-HHHHHHHHHHHHHHT
T ss_pred cHHHHH---HH-----HHHHHHc------CCCeEEEEECC-HHHHHHHHHHHHHhc
Confidence 999876 43 2222211 11258888898 888888888777654
No 85
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.22 E-value=4.5e-07 Score=73.51 Aligned_cols=105 Identities=26% Similarity=0.348 Sum_probs=71.4
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCCC-------CchHHHHHHHHHHcCC-Ceeeecc-cCCcc----cceeeecCCCC--
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFEE-------PTAIQAQGWPIALSGR-DMVGIAQ-TGSGK----TLAVINFDYPN-- 101 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~~-------~t~~Q~~a~~~~l~G~-di~~~a~-tgsGK----t~~~~~~~lP~-- 101 (165)
.++.|. .....+.+.+.|...|+.. +...+...+..+..|. +++++.. -+.|= ...+++||+|.
T Consensus 245 ~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~ 324 (395)
T 3pey_A 245 SSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLA 324 (395)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCT
T ss_pred CEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCC
Confidence 344444 4567788888898887753 2234445555566553 3433322 22332 22789999998
Q ss_pred ----ChhHHHHhhccCCCCCCCCceEEEECCCc-HHHHHHHHHHHH
Q psy7691 102 ----SSEDYIHRIGRTGRCASSGTAYTFFTPNN-GKQAKELIAVLT 142 (165)
Q Consensus 102 ----~~~~~i~r~gr~~r~~~~g~~~~~~~p~~-~~~~~~i~~~l~ 142 (165)
+..+|+||+||+||.|..|.+++++.+.+ ......+.+.+.
T Consensus 325 ~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 325 NGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp TSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 88999999999999999999999998764 455666666665
No 86
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.22 E-value=1.8e-07 Score=82.42 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=54.1
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH-HHH
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL-IAV 140 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i-~~~ 140 (165)
.|++.|.++++.++.|.|++++++||+|||+++. +| .++.+.+. +....+..+++++|+ +.++.|. .+.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~---~~-----i~~~l~~~-~~~~~~~~vlvl~P~-~~L~~Q~~~~~ 76 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAV---YI-----AKDHLDKK-KKASEPGKVIVLVNK-VLLVEQLFRKE 76 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHH---HH-----HHHHHHHH-HHHTCCCCBCCEESC-SHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHH---HH-----HHHHHHhc-cccCCCCeEEEEECC-HHHHHHHHHHH
Confidence 4899999999999999999999999999999988 77 44443221 111223457788998 7777777 665
Q ss_pred HHhc
Q psy7691 141 LTEA 144 (165)
Q Consensus 141 l~~~ 144 (165)
+...
T Consensus 77 l~~~ 80 (699)
T 4gl2_A 77 FQPF 80 (699)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 87
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.21 E-value=3.8e-07 Score=79.93 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=66.3
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCCC------Cc-hHHHHHHHHHHcCC-Ceee-ecccCCccc----ceeeecCCCCCh
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFEE------PT-AIQAQGWPIALSGR-DMVG-IAQTGSGKT----LAVINFDYPNSS 103 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~~------~t-~~Q~~a~~~~l~G~-di~~-~a~tgsGKt----~~~~~~~lP~~~ 103 (165)
+++.|. ...-.+.+.+.|...|+.. .+ ..+......+..|. +|++ +..-|.|-. -.|++|++|.+.
T Consensus 269 ~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~ 348 (591)
T 2v1x_A 269 SGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSM 348 (591)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSH
T ss_pred CeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCH
Confidence 344454 4467788888898888743 22 23444555566663 3332 222233422 279999999999
Q ss_pred hHHHHhhccCCCCCCCCceEEEECCCcHHHH
Q psy7691 104 EDYIHRIGRTGRCASSGTAYTFFTPNNGKQA 134 (165)
Q Consensus 104 ~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~ 134 (165)
+.|+||+||+||.|..|.+++++.+.+...+
T Consensus 349 ~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~ 379 (591)
T 2v1x_A 349 ENYYQESGRAGRDDMKADCILYYGFGDIFRI 379 (591)
T ss_dssp HHHHHHHTTSCTTSSCEEEEEEECHHHHHHH
T ss_pred HHHHHHhccCCcCCCCceEEEEEChHHHHHH
Confidence 9999999999999999999999988764433
No 88
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.18 E-value=7.7e-07 Score=78.42 Aligned_cols=111 Identities=17% Similarity=0.134 Sum_probs=72.7
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCCCCc---hHHHH--------------HHHHHHcCCCeeeecc---cC---------
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFEEPT---AIQAQ--------------GWPIALSGRDMVGIAQ---TG--------- 87 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~~~t---~~Q~~--------------a~~~~l~G~di~~~a~---tg--------- 87 (165)
.++.|. +..-.+.+.+.|...|+.... ..+.+ |++.+.+|.|+. +.- .|
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~ 435 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILT 435 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEEC
T ss_pred CEEEEECChhHHHHHHHHHHHcCCcEEEEChHHHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecc
Confidence 344554 446777888888888775321 11222 344445666553 110 00
Q ss_pred CcccceeeecCCCCChhHHHHhhccCCCCCC-CCceEEEEC---CCcHHHHHHHHHHHHhcCCCCC
Q psy7691 88 SGKTLAVINFDYPNSSEDYIHRIGRTGRCAS-SGTAYTFFT---PNNGKQAKELIAVLTEASQPIP 149 (165)
Q Consensus 88 sGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~-~g~~~~~~~---p~~~~~~~~i~~~l~~~~~~~p 149 (165)
...+-.++|||+|.+.++|+||+||+||.|. .|.++++++ +.+...+..+++.+.....++|
T Consensus 436 ~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~ 501 (618)
T 2whx_A 436 DGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTP 501 (618)
T ss_dssp SSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCT
T ss_pred cCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCC
Confidence 0111234899999999999999999999975 899999998 7777788888887766555554
No 89
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.18 E-value=4.4e-07 Score=78.24 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=66.8
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCCC------Cch-HHHHHHHHHHcCC-Ceeee-cccCCcc----cceeeecCCCCCh
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFEE------PTA-IQAQGWPIALSGR-DMVGI-AQTGSGK----TLAVINFDYPNSS 103 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~~------~t~-~Q~~a~~~~l~G~-di~~~-a~tgsGK----t~~~~~~~lP~~~ 103 (165)
+++.|. +..-.+.+.+.|...|+.. .++ ........+..|. +++++ ..-|.|- .-.|++|++|.+.
T Consensus 238 ~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~ 317 (523)
T 1oyw_A 238 SGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 317 (523)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSH
T ss_pred cEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCH
Confidence 344454 4467788888898887743 222 2334455566664 33322 2234442 2379999999999
Q ss_pred hHHHHhhccCCCCCCCCceEEEECCCcHHHHH
Q psy7691 104 EDYIHRIGRTGRCASSGTAYTFFTPNNGKQAK 135 (165)
Q Consensus 104 ~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~ 135 (165)
++|+||+||+||.|..|.+++++.+.+.....
T Consensus 318 ~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~ 349 (523)
T 1oyw_A 318 ESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349 (523)
T ss_dssp HHHHHHHTTSCTTSSCEEEEEEECHHHHHHHH
T ss_pred HHHHHHhccccCCCCCceEEEEeCHHHHHHHH
Confidence 99999999999999999999999887654433
No 90
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.15 E-value=2.6e-06 Score=71.68 Aligned_cols=63 Identities=21% Similarity=0.149 Sum_probs=52.0
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
.+++.|.++++.++.+.+++++++||+|||+.++ ++ +... +..+++++|+ +.++.|..+.+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l---~~------i~~~---------~~~~Lvl~P~-~~L~~Q~~~~~ 153 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAM---AA------INEL---------STPTLIVVPT-LALAEQWKERL 153 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHH---HH------HHHH---------CSCEEEEESS-HHHHHHHHHHG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHH---HH------HHHc---------CCCEEEEECC-HHHHHHHHHHH
Confidence 5899999999999999999999999999999876 44 2222 3468888898 88888888887
Q ss_pred Hh
Q psy7691 142 TE 143 (165)
Q Consensus 142 ~~ 143 (165)
..
T Consensus 154 ~~ 155 (472)
T 2fwr_A 154 GI 155 (472)
T ss_dssp GG
T ss_pred Hh
Confidence 76
No 91
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.13 E-value=5.4e-06 Score=77.67 Aligned_cols=84 Identities=19% Similarity=0.122 Sum_probs=62.8
Q ss_pred CCcHHHHHHHH-hCCCCCCchHHHHHHHHHHc----CC--CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCC
Q psy7691 46 CFPNAVLQHLK-GQGFEEPTAIQAQGWPIALS----GR--DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCAS 118 (165)
Q Consensus 46 ~l~~~l~~~l~-~~g~~~~t~~Q~~a~~~~l~----G~--di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~ 118 (165)
..+..+.+.+. ..+|. +|+.|.+|++.++. |. |++++++||+|||++++ ++ ....+ .
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val---~a-----a~~~~-------~ 650 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM---RA-----AFLAV-------D 650 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHH---HH-----HHHHH-------T
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHH---HH-----HHHHH-------H
Confidence 45566666654 46997 79999999999876 65 99999999999998766 44 22222 1
Q ss_pred CCceEEEECCCcHHHHHHHHHHHHhcCC
Q psy7691 119 SGTAYTFFTPNNGKQAKELIAVLTEASQ 146 (165)
Q Consensus 119 ~g~~~~~~~p~~~~~~~~i~~~l~~~~~ 146 (165)
.|..+++++|+ +.++.|..+.+.....
T Consensus 651 ~g~~vlvlvPt-~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 651 NHKQVAVLVPT-TLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp TTCEEEEECSS-HHHHHHHHHHHHHHST
T ss_pred hCCeEEEEech-HHHHHHHHHHHHHHhh
Confidence 34578999999 8889888888876443
No 92
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.11 E-value=1.6e-06 Score=80.27 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=56.5
Q ss_pred hCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHH
Q psy7691 57 GQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKE 136 (165)
Q Consensus 57 ~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~ 136 (165)
..+|. ++++|.++++.++.|.|++++++||+|||+++. +| +..-. + .|..+++++|+ +.++.|
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~---~~-----i~~~~-~------~g~~vlvl~Pt-raLa~Q 97 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAE---YA-----IAMAH-R------NMTKTIYTSPI-KALSNQ 97 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHH---HH-----HHHHH-H------TTCEEEEEESC-GGGHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHH---HH-----HHHHH-h------cCCeEEEEeCC-HHHHHH
Confidence 45786 899999999999999999999999999998765 44 22221 1 34567888998 888888
Q ss_pred HHHHHHhcC
Q psy7691 137 LIAVLTEAS 145 (165)
Q Consensus 137 i~~~l~~~~ 145 (165)
+.+.+....
T Consensus 98 ~~~~l~~~~ 106 (997)
T 4a4z_A 98 KFRDFKETF 106 (997)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHc
Confidence 888887643
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.08 E-value=5.4e-06 Score=64.33 Aligned_cols=63 Identities=21% Similarity=0.149 Sum_probs=50.4
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
.+++.|.+++..++.+.+++++++||+|||..++ .+ +.+. +..+++++|+ +.++.|+.+.+
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~---~~------~~~~---------~~~~liv~P~-~~L~~q~~~~~ 153 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAM---AA------INEL---------STPTLIVVPT-LALAEQWKERL 153 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHH---HH------HHHS---------CSCEEEEESS-HHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHH---HH------HHHc---------CCCEEEEeCC-HHHHHHHHHHH
Confidence 5789999999999999999999999999999765 32 2222 2357888888 78888888877
Q ss_pred Hh
Q psy7691 142 TE 143 (165)
Q Consensus 142 ~~ 143 (165)
..
T Consensus 154 ~~ 155 (237)
T 2fz4_A 154 GI 155 (237)
T ss_dssp GG
T ss_pred Hh
Confidence 76
No 94
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.05 E-value=1.4e-06 Score=73.52 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=46.5
Q ss_pred eeecCCCCChhHHHHhhccCCCC-CCCCceEEEE---CCCcHHHHHHHHHHHHhcCCCCCh
Q psy7691 94 VINFDYPNSSEDYIHRIGRTGRC-ASSGTAYTFF---TPNNGKQAKELIAVLTEASQPIPP 150 (165)
Q Consensus 94 ~~~~~lP~~~~~~i~r~gr~~r~-~~~g~~~~~~---~p~~~~~~~~i~~~l~~~~~~~p~ 150 (165)
+++|+.|.+..+|+||+||+||. +..|.+++++ ++.+...+..+...+.....++|.
T Consensus 263 vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 263 AIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred eeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccc
Confidence 34699999999999999999998 6899999996 677777778888877666666643
No 95
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.04 E-value=1.2e-05 Score=72.92 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=43.3
Q ss_pred ceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHH----HHHHHHHHHhc
Q psy7691 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ----AKELIAVLTEA 144 (165)
Q Consensus 92 ~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~----~~~i~~~l~~~ 144 (165)
++||||++|.+...|+||+||+||.|..|.+..|+++.+..+ ...+...+...
T Consensus 546 l~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~r~f~~~~~~~~~~~~ 602 (853)
T 2fsf_A 546 LHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKL 602 (853)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGGGTTCCHHHHTTGGGG
T ss_pred cEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHHHHHhhHHHHHHHHHhh
Confidence 489999999999999999999999999999999999886322 23454455443
No 96
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.03 E-value=3.1e-06 Score=79.03 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=33.5
Q ss_pred ChhHHHHhhccCCCCCCCC--ceEEEECCCcHHHHHHHHHHHHh
Q psy7691 102 SSEDYIHRIGRTGRCASSG--TAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 102 ~~~~~i~r~gr~~r~~~~g--~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
+.++|+||+|||||.+..| ..++++...+..++..|.+.+..
T Consensus 461 d~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 461 DVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLL 504 (1104)
T ss_dssp CHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHH
T ss_pred ChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhh
Confidence 7789999999999976544 45666677888888888888863
No 97
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.02 E-value=2.9e-06 Score=73.44 Aligned_cols=68 Identities=18% Similarity=0.031 Sum_probs=54.1
Q ss_pred CCCCCchHHHHHHHH----HHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHH
Q psy7691 59 GFEEPTAIQAQGWPI----ALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA 134 (165)
Q Consensus 59 g~~~~t~~Q~~a~~~----~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~ 134 (165)
|| .+.+.|.+.+.. +..|.|+++.|+||+|||++|+ +| .++ .+..+++++|+ ++++
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l---~p-----~l~----------~~~~v~i~~pt-~~l~ 60 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSL---LV-----SLE----------VKPKVLFVVRT-HNEF 60 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHH---HH-----HHH----------HCSEEEEEESS-GGGH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHH---HH-----HHh----------CCCeEEEEcCC-HHHH
Confidence 45 478999886653 4688999999999999999999 88 554 24578999999 8888
Q ss_pred HHHHHHHHhcCC
Q psy7691 135 KELIAVLTEASQ 146 (165)
Q Consensus 135 ~~i~~~l~~~~~ 146 (165)
.|+.+-+.....
T Consensus 61 ~q~~~~~~~l~~ 72 (551)
T 3crv_A 61 YPIYRDLTKIRE 72 (551)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHHHHhh
Confidence 899888876644
No 98
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.00 E-value=9.7e-07 Score=75.59 Aligned_cols=114 Identities=18% Similarity=0.312 Sum_probs=63.2
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCCCCc-------hHHHHHHHHHHcCC-Ceeeecc-cCCcc----cceeeecCCC---
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFEEPT-------AIQAQGWPIALSGR-DMVGIAQ-TGSGK----TLAVINFDYP--- 100 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~~~t-------~~Q~~a~~~~l~G~-di~~~a~-tgsGK----t~~~~~~~lP--- 100 (165)
+++.|. .....+.+.+.|.+.|+.... ..+...+..+..|. +++++.. -+.|= ...+++||+|
T Consensus 359 ~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~ 438 (508)
T 3fho_A 359 QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQ 438 (508)
T ss_dssp CEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-
T ss_pred cEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcc
Confidence 444554 557888888989887765321 12333344444442 2332221 12221 1268999999
Q ss_pred ---CChhHHHHhhccCCCCCCCCceEEEECCC-cHHHHHHHHHHHHhcCCCCChH
Q psy7691 101 ---NSSEDYIHRIGRTGRCASSGTAYTFFTPN-NGKQAKELIAVLTEASQPIPPQ 151 (165)
Q Consensus 101 ---~~~~~~i~r~gr~~r~~~~g~~~~~~~p~-~~~~~~~i~~~l~~~~~~~p~~ 151 (165)
.+..+|+||+||+||.|+.|.+++++.+. +......+.+++.....++|..
T Consensus 439 ~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 439 AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp ----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 78899999999999999999999999865 4566788888888887777643
No 99
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.00 E-value=4e-06 Score=72.55 Aligned_cols=67 Identities=18% Similarity=0.097 Sum_probs=49.6
Q ss_pred CCCCCCchHHHHHHH----HHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHH
Q psy7691 58 QGFEEPTAIQAQGWP----IALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ 133 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~----~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~ 133 (165)
.|| .+++.|.+++. .+..|.|+++.++||+|||++++ +| .++. +..+++++|+ +.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l---~~-----~~~~----------~~~~~~~~~t-~~l 63 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVE---VL-----GMQL----------KKKVLIFTRT-HSQ 63 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHH---HH-----HHHH----------TCEEEEEESC-HHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHH---HH-----HHhC----------CCcEEEEcCC-HHH
Confidence 478 68999998754 44688999999999999999988 77 3332 3478888898 888
Q ss_pred HHHHHHHHHhc
Q psy7691 134 AKELIAVLTEA 144 (165)
Q Consensus 134 ~~~i~~~l~~~ 144 (165)
+.|+.+-+...
T Consensus 64 ~~q~~~~~~~l 74 (540)
T 2vl7_A 64 LDSIYKNAKLL 74 (540)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHhc
Confidence 88888877663
No 100
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.00 E-value=3.1e-06 Score=71.86 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=54.5
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
.+++.|.+|++.++.+.|++++++||+|||+.++ +| ....+.. .+..+++++|+ +.++.|..+.+
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~---~~-----~~~~~~~------~~~~vlvl~P~-~~L~~Q~~~~~ 177 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQA---LL-----ARYYLEN------YEGKILIIVPT-TALTTQMADDF 177 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHH---HH-----HHHHHHH------CSSEEEEEESS-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHH---HH-----HHHHHhC------CCCeEEEEECc-HHHHHHHHHHH
Confidence 6899999999999999999999999999999887 55 3333311 11278899998 88888888888
Q ss_pred Hhc
Q psy7691 142 TEA 144 (165)
Q Consensus 142 ~~~ 144 (165)
..-
T Consensus 178 ~~~ 180 (510)
T 2oca_A 178 VDY 180 (510)
T ss_dssp HHT
T ss_pred HHh
Confidence 665
No 101
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.98 E-value=2.4e-06 Score=72.56 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=43.4
Q ss_pred CCccccccC-CCcHHHHHHHHhC------------CCC-------CCchHHHHHHHHHHc-C-CCeeeeccc-CCcc---
Q psy7691 37 CPTQELTEG-CFPNAVLQHLKGQ------------GFE-------EPTAIQAQGWPIALS-G-RDMVGIAQT-GSGK--- 90 (165)
Q Consensus 37 ~~i~~f~~l-~l~~~l~~~l~~~------------g~~-------~~t~~Q~~a~~~~l~-G-~di~~~a~t-gsGK--- 90 (165)
..++.|.+. ...+.+.+.|... |.. .+...+..++..+.. | .+++++... +.|=
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip 470 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 470 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC---------
T ss_pred ceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCch
Confidence 456666654 5666777777654 221 122233445555555 4 234332221 2222
Q ss_pred -cceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHH
Q psy7691 91 -TLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGK 132 (165)
Q Consensus 91 -t~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~ 132 (165)
.-+|++||+|.+..+|+||+|| ||. +.|.++.++++.+.+
T Consensus 471 ~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 471 QCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp --CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 1279999999999999999999 998 889999999887643
No 102
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.98 E-value=5e-06 Score=68.48 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=52.6
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
.|++.|.++++.++.+ ++++.++||+|||+.++ ++ ..+.+. ..+..+++++|+ +.++.|..+.+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~---~~-----~~~~~~------~~~~~~liv~P~-~~L~~q~~~~~ 72 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAM---MI-----AEYRLT------KYGGKVLMLAPT-KPLVLQHAESF 72 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHH---HH-----HHHHHH------HSCSCEEEECSS-HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHH---HH-----HHHHHh------cCCCeEEEEECC-HHHHHHHHHHH
Confidence 4899999999999999 99999999999999887 55 333332 123468899998 78888777777
Q ss_pred Hhc
Q psy7691 142 TEA 144 (165)
Q Consensus 142 ~~~ 144 (165)
...
T Consensus 73 ~~~ 75 (494)
T 1wp9_A 73 RRL 75 (494)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 103
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=97.94 E-value=5e-05 Score=69.27 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=44.8
Q ss_pred ceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHH----HHHHHHHHhcC
Q psy7691 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA----KELIAVLTEAS 145 (165)
Q Consensus 92 ~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~----~~i~~~l~~~~ 145 (165)
++||||++|.+...|+||+||+||.|..|.+..|+++.+.-+- ..+..++....
T Consensus 580 lhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~~ 637 (922)
T 1nkt_A 580 LYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLN 637 (922)
T ss_dssp EEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHTT
T ss_pred cEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHhC
Confidence 5899999999999999999999999999999999998864332 35666665543
No 104
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.89 E-value=5.3e-06 Score=77.08 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=38.0
Q ss_pred CChhHHHHhhccCCCCCCCC--ceEEEECCCcHHHHHHHHHHHHh
Q psy7691 101 NSSEDYIHRIGRTGRCASSG--TAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 101 ~~~~~~i~r~gr~~r~~~~g--~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
.+..+|+||+||+||.|..| .+++++.+.+...+..+.+.+..
T Consensus 424 ~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 424 PDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp ECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred CcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 68999999999999988776 48889999888899999988886
No 105
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.87 E-value=5.7e-06 Score=69.90 Aligned_cols=91 Identities=20% Similarity=0.182 Sum_probs=55.1
Q ss_pred Ccccccc-CCCcHHHHHHHHhCCCCCC---chHHHHHHHHHHcCC-Ceeeecc-cCCccc---ceeeecC----------
Q psy7691 38 PTQELTE-GCFPNAVLQHLKGQGFEEP---TAIQAQGWPIALSGR-DMVGIAQ-TGSGKT---LAVINFD---------- 98 (165)
Q Consensus 38 ~i~~f~~-l~l~~~l~~~l~~~g~~~~---t~~Q~~a~~~~l~G~-di~~~a~-tgsGKt---~~~~~~~---------- 98 (165)
+++.|.. ..-.+.+.+.|...|+... ...+...+..+..|. +++++.. -+.|=+ ..|+|||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~v~~~GiDip~~~VI~~~~~~~~~~d~~ 269 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTD 269 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEECGGGGSSCCCCCSEEEECCEEEEEEEECS
T ss_pred CEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhhccCCceEEEECCHHHhCcCCCCCEEEECCCccccccccc
Confidence 4445543 4567788888888777531 112333333333342 2222111 111111 3789988
Q ss_pred ----------CCCChhHHHHhhccCCCCCC-CCceEEEECC
Q psy7691 99 ----------YPNSSEDYIHRIGRTGRCAS-SGTAYTFFTP 128 (165)
Q Consensus 99 ----------lP~~~~~~i~r~gr~~r~~~-~g~~~~~~~p 128 (165)
.|.+..+|+||+||+||.|. .|.++++...
T Consensus 270 ~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 270 GPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp SSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 7777666543
No 106
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.87 E-value=6.4e-06 Score=73.29 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=40.1
Q ss_pred cCCCCChhHHHHhhccCCCC-CCCCceEEEE---CCCcHHHHHHHHHHHHhcCCCC
Q psy7691 97 FDYPNSSEDYIHRIGRTGRC-ASSGTAYTFF---TPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 97 ~~lP~~~~~~i~r~gr~~r~-~~~g~~~~~~---~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
||+|.+.++|+||+||+||. +..|.+++++ .+.+...+..++..+.....++
T Consensus 500 ~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~ 555 (673)
T 2wv9_A 500 VPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHL 555 (673)
T ss_dssp CSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCB
T ss_pred ccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccC
Confidence 78999999999999999999 7899999996 5666666666666554433333
No 107
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.85 E-value=2.8e-06 Score=72.00 Aligned_cols=55 Identities=20% Similarity=0.162 Sum_probs=44.8
Q ss_pred HHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHH
Q psy7691 73 IALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 73 ~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
.+..|.|++++++||||||++|+ +| +++++.. .+..+++++|+ ++++.|+.+.+.
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~---l~-----il~~~~~------~~~~~lvl~Pt-r~La~Q~~~~l~ 71 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKIL---PQ-----IIKDAIQ------QRLRTAVLAPT-RVVAAEMAEALR 71 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHH---HH-----HHHHHHH------TTCCEEEEECS-HHHHHHHHHHTT
T ss_pred HHhcCCcEEEECCCCCCHHHHHH---HH-----HHHHHHh------CCCcEEEECch-HHHHHHHHHHhc
Confidence 46778999999999999999988 78 7766532 24568888898 999999998876
No 108
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.83 E-value=1.4e-06 Score=73.84 Aligned_cols=99 Identities=13% Similarity=0.165 Sum_probs=59.3
Q ss_pred CCccccccC-CCcHHHHHHHHhCCC-------------------CCCchHHHHHHHHHHc-C-CCeeeeccc-CCccc--
Q psy7691 37 CPTQELTEG-CFPNAVLQHLKGQGF-------------------EEPTAIQAQGWPIALS-G-RDMVGIAQT-GSGKT-- 91 (165)
Q Consensus 37 ~~i~~f~~l-~l~~~l~~~l~~~g~-------------------~~~t~~Q~~a~~~~l~-G-~di~~~a~t-gsGKt-- 91 (165)
..++.|.+. ...+.+.+.|...|+ ..+...+..++..+.. | .+++++... +.|=.
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp 469 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIA 469 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETT
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccc
Confidence 456667654 677788888887642 1122344456666666 5 355544332 23422
Q ss_pred --ceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 92 --LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 92 --~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
-.|++||+|.+..+|+||+|| ||. +.|.++.++++.+.+....+
T Consensus 470 ~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 470 ECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 279999999999999999999 898 88999999998875544444
No 109
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.82 E-value=8.5e-06 Score=71.79 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=50.7
Q ss_pred CchHHHHHHH----HHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 63 PTAIQAQGWP----IALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 63 ~t~~Q~~a~~----~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
|.+.|.+.+. .+..|.|+++.|+||+|||++++ +| .+..+.. .+..+++++|+ ++++.|+.
T Consensus 4 ~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l---~p-----~l~~~~~------~~~kvli~t~T-~~l~~Qi~ 68 (620)
T 4a15_A 4 NRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMAL---KS-----ALQYSSE------RKLKVLYLVRT-NSQEEQVI 68 (620)
T ss_dssp -CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHH---HH-----HHHHHHH------HTCEEEEEESS-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHH---HH-----HHHhhhh------cCCeEEEECCC-HHHHHHHH
Confidence 6788877654 45789999999999999999999 88 5655532 23478889998 77888887
Q ss_pred HHHHhc
Q psy7691 139 AVLTEA 144 (165)
Q Consensus 139 ~~l~~~ 144 (165)
+-+...
T Consensus 69 ~el~~l 74 (620)
T 4a15_A 69 KELRSL 74 (620)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 110
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.79 E-value=5e-06 Score=70.14 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=45.4
Q ss_pred HHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 73 IALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 73 ~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
.++.|+|++++++||||||++|+ +| +++++.. .+..+++++|+ ++++.|+.+.+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l---~~-----~l~~~~~------~~~~~lil~Pt-r~La~Q~~~~l~~ 59 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFL---PQ-----ILAECAR------RRLRTLVLAPT-RVVLSEMKEAFHG 59 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHH---HH-----HHHHHHH------TTCCEEEEESS-HHHHHHHHHHTTT
T ss_pred HhhCCCCEEEEcCCCCCHHHHHH---HH-----HHHHHHh------cCCeEEEEcch-HHHHHHHHHHHhc
Confidence 36789999999999999999987 77 6666533 24578888898 9999999988764
No 111
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.78 E-value=1.1e-06 Score=77.27 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=46.2
Q ss_pred CCccccccC-CCcHHHHHHHHhCC----CC--------------C-CchHHHHHHHHHHc-CC-Cee-eecccCCccc--
Q psy7691 37 CPTQELTEG-CFPNAVLQHLKGQG----FE--------------E-PTAIQAQGWPIALS-GR-DMV-GIAQTGSGKT-- 91 (165)
Q Consensus 37 ~~i~~f~~l-~l~~~l~~~l~~~g----~~--------------~-~t~~Q~~a~~~~l~-G~-di~-~~a~tgsGKt-- 91 (165)
..++.|... ...+.+.+.|...| +. . +...|.+.+..+.. |. +++ +...-|.|=+
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip 478 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 478 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---C
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCc
Confidence 346667654 67778888888876 21 1 12235556666665 52 433 3333344432
Q ss_pred --ceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 92 --LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 92 --~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
..|++||+|.+.++|+||+|| ||. +.|.++.++...+......+
T Consensus 479 ~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 479 QCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 279999999999999999999 998 77888888877655443333
No 112
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.75 E-value=5.1e-06 Score=70.40 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=31.0
Q ss_pred cCCCCChhHHHHhhccCCCCCC-CCceEEEECCC
Q psy7691 97 FDYPNSSEDYIHRIGRTGRCAS-SGTAYTFFTPN 129 (165)
Q Consensus 97 ~~lP~~~~~~i~r~gr~~r~~~-~g~~~~~~~p~ 129 (165)
||.|.+..+|+||+||+||.|. .|.+++++.+.
T Consensus 280 ~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 280 NPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 8899999999999999999997 89999999886
No 113
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.74 E-value=1.4e-05 Score=70.78 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=63.6
Q ss_pred ccccc-cCCCcHHHHHHHHhCCCCCC------c-hHHHHHHHHHHcC-CCeeee-cccCCccc----ceeeecCC-----
Q psy7691 39 TQELT-EGCFPNAVLQHLKGQGFEEP------T-AIQAQGWPIALSG-RDMVGI-AQTGSGKT----LAVINFDY----- 99 (165)
Q Consensus 39 i~~f~-~l~l~~~l~~~l~~~g~~~~------t-~~Q~~a~~~~l~G-~di~~~-a~tgsGKt----~~~~~~~l----- 99 (165)
++.|. +....+.+.+.|.+.|+... + ..+...+..+..| .++++. ..-+.|=. -+|++||.
T Consensus 448 vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~ 527 (661)
T 2d7d_A 448 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGF 527 (661)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTT
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccC
Confidence 44444 45677888888988887431 1 1233344445545 344432 12233322 26899997
Q ss_pred CCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHH
Q psy7691 100 PNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAK 135 (165)
Q Consensus 100 P~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~ 135 (165)
|.+..+|+||+||+||. ..|.+++++.+.+..+..
T Consensus 528 p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 528 LRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEI 562 (661)
T ss_dssp TTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHH
T ss_pred CCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHH
Confidence 99999999999999998 789999999998755444
No 114
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.64 E-value=5.6e-06 Score=73.56 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=63.9
Q ss_pred Cccccc-cCCCcHHHHHHHHhCCCCCC------chHHH--------HHHHHHHcCCCeeeec---ccCCcccceeeecC-
Q psy7691 38 PTQELT-EGCFPNAVLQHLKGQGFEEP------TAIQA--------QGWPIALSGRDMVGIA---QTGSGKTLAVINFD- 98 (165)
Q Consensus 38 ~i~~f~-~l~l~~~l~~~l~~~g~~~~------t~~Q~--------~a~~~~l~G~di~~~a---~tgsGKt~~~~~~~- 98 (165)
.++.|. ...-.+.+.+.|.+.|+... +..+. .|++.+.+|.|+. +. ..|..|. .++|||
T Consensus 398 ~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~-~ViNyDy 475 (666)
T 3o8b_A 398 RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVT-QTVDFSL 475 (666)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEE-EEEECCC
T ss_pred cEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHhCCCcEEEECChHHccCCCC-CcEEEecCcccc-ccccccc
Confidence 444554 44677788888888877431 11111 2455566676643 22 0011111 355899
Q ss_pred ----------CCCChhHHHHhhccCCCCCCCCceEEEECCCcHHH--H--HHHHHHHHh
Q psy7691 99 ----------YPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ--A--KELIAVLTE 143 (165)
Q Consensus 99 ----------lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~--~--~~i~~~l~~ 143 (165)
+|.+.++|+||+||+|| ++.|. +.++.+.+... + ..+.+.+..
T Consensus 476 dP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~ 532 (666)
T 3o8b_A 476 DPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDA 532 (666)
T ss_dssp SSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHH
T ss_pred ccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcC
Confidence 99999999999999999 99998 88888876443 2 444444443
No 115
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.62 E-value=1.5e-05 Score=71.63 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=45.8
Q ss_pred CCccccccC-CCcHHHHHHHHhC------------CCC-------CCchHHHHHHHHHHc-CC-Ceeeeccc-CCcc---
Q psy7691 37 CPTQELTEG-CFPNAVLQHLKGQ------------GFE-------EPTAIQAQGWPIALS-GR-DMVGIAQT-GSGK--- 90 (165)
Q Consensus 37 ~~i~~f~~l-~l~~~l~~~l~~~------------g~~-------~~t~~Q~~a~~~~l~-G~-di~~~a~t-gsGK--- 90 (165)
..++.|.+. ...+.+.+.|... |+. .+...+...+..+.. |. +++++... |.|=
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp 711 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------C
T ss_pred CeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCch
Confidence 456677654 6777777878663 221 122234455555655 53 44433322 2332
Q ss_pred -cceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcH
Q psy7691 91 -TLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNG 131 (165)
Q Consensus 91 -t~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~ 131 (165)
.-.|++||+|.+...|+||+|| ||. +.|.++.++++.+.
T Consensus 712 ~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 712 QCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 2279999999999999999999 998 88999999988754
No 116
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=97.56 E-value=5.6e-05 Score=66.42 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=54.7
Q ss_pred CCCcccccc-CCCcHHHHHHHHhC------CCC---------------CCchHHHHHHHHHHcCC-Ceee-ecccCCccc
Q psy7691 36 PCPTQELTE-GCFPNAVLQHLKGQ------GFE---------------EPTAIQAQGWPIALSGR-DMVG-IAQTGSGKT 91 (165)
Q Consensus 36 p~~i~~f~~-l~l~~~l~~~l~~~------g~~---------------~~t~~Q~~a~~~~l~G~-di~~-~a~tgsGKt 91 (165)
...++.|.. ....+.+.+.|... |+. .+...+.+.+..+..|. +|++ +..-|.|=.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 345566655 46777888888765 543 22334555666666553 3332 222233422
Q ss_pred c----eeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 92 L----AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 92 ~----~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
+ .|++||+|.+..+|+||+||+||. |.++.++.+.+
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~---g~~~~l~~~~~ 519 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARAD---ESTYVLVAHSG 519 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSS---SCEEEEEEESS
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCC---CceEEEEEeCC
Confidence 2 689999999999999999996443 45666665543
No 117
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.54 E-value=2.6e-05 Score=65.54 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=41.3
Q ss_pred cCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHH
Q psy7691 76 SGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
.|.|++++++||||||++++ +| +++++-. .|..+++++|+ +.++.|+.+.+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l---~~-----~l~~~~~------~g~~~lvl~Pt-~~La~Q~~~~~~ 52 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVL---PQ-----LVREAVK------KRLRTVILAPT-RVVASEMYEALR 52 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHH---HH-----HHHHHHH------TTCCEEEEESS-HHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHH---HH-----HHHHHHh------CCCCEEEECcH-HHHHHHHHHHhC
Confidence 37899999999999999987 67 6655432 34578888898 899999988875
No 118
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.53 E-value=3.8e-05 Score=68.12 Aligned_cols=99 Identities=16% Similarity=0.096 Sum_probs=64.4
Q ss_pred ccccc-cCCCcHHHHHHHHhCCCCCC------c-hHHHHHHHHHHcC-CCeeee-cccCCccc----ceeeecCC-----
Q psy7691 39 TQELT-EGCFPNAVLQHLKGQGFEEP------T-AIQAQGWPIALSG-RDMVGI-AQTGSGKT----LAVINFDY----- 99 (165)
Q Consensus 39 i~~f~-~l~l~~~l~~~l~~~g~~~~------t-~~Q~~a~~~~l~G-~di~~~-a~tgsGKt----~~~~~~~l----- 99 (165)
++.|. +....+.+.+.|.+.|+... + ..+.+.+..+..| .++++. ..-+.|=. -.|++||.
T Consensus 442 vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~ 521 (664)
T 1c4o_A 442 TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGF 521 (664)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSG
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCC
Confidence 34444 44677888888888887531 1 2233444445555 344432 13333422 26899997
Q ss_pred CCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 100 PNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 100 P~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
|.+..+|+||+||+||.+ .|.+++++.+.+..+...|.
T Consensus 522 p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 522 LRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp GGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred CCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 889999999999999984 79999999887765444333
No 119
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.41 E-value=3.6e-05 Score=63.30 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=67.1
Q ss_pred CCCcccccc-CCCcHHHHHHHHhCCCC---------------CCchHHHHHHHHHHcCC-Ceeeeccc-CCccc----ce
Q psy7691 36 PCPTQELTE-GCFPNAVLQHLKGQGFE---------------EPTAIQAQGWPIALSGR-DMVGIAQT-GSGKT----LA 93 (165)
Q Consensus 36 p~~i~~f~~-l~l~~~l~~~l~~~g~~---------------~~t~~Q~~a~~~~l~G~-di~~~a~t-gsGKt----~~ 93 (165)
...++.|.+ ......+.+.|...|+. .+...+.+.+..+..|. +++++... |.|=+ ..
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~ 440 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDL 440 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCE
T ss_pred CCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCE
Confidence 344566665 46777888888887663 12234556677776664 45443322 33432 26
Q ss_pred eeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHH
Q psy7691 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGK 132 (165)
Q Consensus 94 ~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~ 132 (165)
|++||.|.+...|+||+||++|.|. |.++.++++.+.+
T Consensus 441 Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 441 VVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp EEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred EEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 8999999999999999999999998 9999999988643
No 120
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.37 E-value=7.3e-05 Score=64.73 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=42.7
Q ss_pred CCchHHHHHHHHHHc----C-CCeeeecccCCcccceeeecCCCCChhHHHHhhccCC---CCCCCCceEEEECCCcHHH
Q psy7691 62 EPTAIQAQGWPIALS----G-RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTG---RCASSGTAYTFFTPNNGKQ 133 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~----G-~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~---r~~~~g~~~~~~~p~~~~~ 133 (165)
.+++.|.+|++.++. | .+++++++||+|||++++ + ++.++-+.+ .....+..+++++|+ +++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~----~-----~~~~l~~~~~~~~~~~~~~~vlil~P~-~~L 247 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF----Q-----ISWKLWSARWNRTGDYRKPRILFLADR-NVL 247 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH----H-----HHHHHHHTTCCSSCSSSCCCEEEEEC-----
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH----H-----HHHHHHhcccccccccCCCeEEEEeCC-HHH
Confidence 589999999998875 5 558999999999999754 3 555553332 111245678999998 788
Q ss_pred HHHHH-HHHH
Q psy7691 134 AKELI-AVLT 142 (165)
Q Consensus 134 ~~~i~-~~l~ 142 (165)
+.|.. +.+.
T Consensus 248 ~~Q~~~~~~~ 257 (590)
T 3h1t_A 248 VDDPKDKTFT 257 (590)
T ss_dssp -------CCT
T ss_pred HHHHHHHHHH
Confidence 88877 4444
No 121
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.36 E-value=1.3e-05 Score=71.16 Aligned_cols=61 Identities=21% Similarity=0.158 Sum_probs=44.2
Q ss_pred chHHHHHHH-HHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHH
Q psy7691 64 TAIQAQGWP-IALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 64 t~~Q~~a~~-~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
...|+++++ .+..+.|++++|+||||||.+|. +| +++ .|..++++.|+ ++++.|+.+.+.
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~---l~-----ll~----------~g~~vLVl~PT-ReLA~Qia~~l~ 278 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVP---AA-----YAA----------QGYKVLVLNPS-VAATLGFGAYMS 278 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHH---HH-----HHH----------TTCCEEEEESC-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHH---HH-----HHH----------CCCeEEEEcch-HHHHHHHHHHHH
Confidence 333444444 44577899999999999999887 55 443 13468899999 899999987664
Q ss_pred h
Q psy7691 143 E 143 (165)
Q Consensus 143 ~ 143 (165)
.
T Consensus 279 ~ 279 (666)
T 3o8b_A 279 K 279 (666)
T ss_dssp H
T ss_pred H
Confidence 3
No 122
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.36 E-value=4.7e-05 Score=69.90 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=46.1
Q ss_pred CCCccccccC-CCcHHHHHHHHhC------------CCC-------CCchHHHHHHHHHHc-CC-Ceeeec-ccCCcc--
Q psy7691 36 PCPTQELTEG-CFPNAVLQHLKGQ------------GFE-------EPTAIQAQGWPIALS-GR-DMVGIA-QTGSGK-- 90 (165)
Q Consensus 36 p~~i~~f~~l-~l~~~l~~~l~~~------------g~~-------~~t~~Q~~a~~~~l~-G~-di~~~a-~tgsGK-- 90 (165)
...++.|... ...+.+.+.|... |.. .+...+.+.+..+.. |. +++++. .-|.|=
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDl 710 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI 710 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------C
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcc
Confidence 3456677654 6788888888875 321 122234455555655 53 444322 222332
Q ss_pred --cceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcH
Q psy7691 91 --TLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNG 131 (165)
Q Consensus 91 --t~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~ 131 (165)
.-.|++||+|.+..+|+||+|| ||. +.|.++.+++..+.
T Consensus 711 p~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 711 VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 2279999999999999999999 998 78889888887654
No 123
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.28 E-value=9.5e-05 Score=68.13 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=70.1
Q ss_pred CCccccccC-CCcHHHHHHHHh-CCCCC------Cch-HHHHHHHHHHcC---CCeeeeccc-CCcc----cceeeecCC
Q psy7691 37 CPTQELTEG-CFPNAVLQHLKG-QGFEE------PTA-IQAQGWPIALSG---RDMVGIAQT-GSGK----TLAVINFDY 99 (165)
Q Consensus 37 ~~i~~f~~l-~l~~~l~~~l~~-~g~~~------~t~-~Q~~a~~~~l~G---~di~~~a~t-gsGK----t~~~~~~~l 99 (165)
..++.|... ...+.+.+.|.. .|+.. .+. .....+..+..| .+++++... +.|- ...+++||+
T Consensus 504 ~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~ 583 (968)
T 3dmq_A 504 QKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL 583 (968)
T ss_dssp SCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecC
Confidence 345566654 566777778884 47642 222 334566667777 355544322 2332 236899999
Q ss_pred CCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 100 PNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 100 P~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
|.+...|.|++||++|.|..+.+.++....+...-..|.+.+..
T Consensus 584 p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~ 627 (968)
T 3dmq_A 584 PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHE 627 (968)
T ss_dssp CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHh
Confidence 99999999999999999999987777655544444556666643
No 124
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.27 E-value=0.00018 Score=64.00 Aligned_cols=76 Identities=21% Similarity=0.167 Sum_probs=50.2
Q ss_pred cHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEEC
Q psy7691 48 PNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127 (165)
Q Consensus 48 ~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~ 127 (165)
+.+.++++.+. ..| .|+......+.|+|++++|+||||||.. .++++...+ .| +++.
T Consensus 130 ~~d~l~~i~dl--~~p--~~~~p~ar~l~rk~vlv~apTGSGKT~~------------al~~l~~~~----~g---l~l~ 186 (677)
T 3rc3_A 130 CKDDLRKISDL--RIP--PNWYPDARAMQRKIIFHSGPTNSGKTYH------------AIQKYFSAK----SG---VYCG 186 (677)
T ss_dssp CHHHHHHHTBC--CCG--GGGCHHHHTSCCEEEEEECCTTSSHHHH------------HHHHHHHSS----SE---EEEE
T ss_pred CHHHHHHHhhc--cCh--hhhCHHHHhcCCCEEEEEcCCCCCHHHH------------HHHHHHhcC----Ce---EEEe
Confidence 44445555433 333 3444445578999999999999999982 344443321 12 6778
Q ss_pred CCcHHHHHHHHHHHHhcCCC
Q psy7691 128 PNNGKQAKELIAVLTEASQP 147 (165)
Q Consensus 128 p~~~~~~~~i~~~l~~~~~~ 147 (165)
|+ ++++.|+.+.+...+..
T Consensus 187 Pt-R~LA~Qi~~~l~~~g~~ 205 (677)
T 3rc3_A 187 PL-KLLAHEIFEKSNAAGVP 205 (677)
T ss_dssp SS-HHHHHHHHHHHHHTTCC
T ss_pred CH-HHHHHHHHHHHHhcCCc
Confidence 88 99999999998876443
No 125
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.21 E-value=0.00024 Score=63.24 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=60.3
Q ss_pred ccccccCCCcHHHHHHHHhCCCCC------CchHHH-HHHHHHHc--C-CCeeeec-ccCCcccc---eeeecCC-----
Q psy7691 39 TQELTEGCFPNAVLQHLKGQGFEE------PTAIQA-QGWPIALS--G-RDMVGIA-QTGSGKTL---AVINFDY----- 99 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~g~~~------~t~~Q~-~a~~~~l~--G-~di~~~a-~tgsGKt~---~~~~~~l----- 99 (165)
++.|....-.+.+.+.|.+.|+.. .++.++ +....+.. | .+|+++. .-+.|=++ .|++|++
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi~v~~VI~~~~~k~~~ 403 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSI 403 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCCCBSEEEESCSBC---
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCcCccEEEECCcccccc
Confidence 333333344667777888777643 222222 33334444 4 3444332 22344332 6889999
Q ss_pred ---------CCChhHHHHhhccCCCCCCCCc--eEEEECCCcHHHHHHHHHHHHhcCCCC
Q psy7691 100 ---------PNSSEDYIHRIGRTGRCASSGT--AYTFFTPNNGKQAKELIAVLTEASQPI 148 (165)
Q Consensus 100 ---------P~~~~~~i~r~gr~~r~~~~g~--~~~~~~p~~~~~~~~i~~~l~~~~~~~ 148 (165)
|.+..+|+||+||+||.|..|. .+.++.+.+.. .+.+++.....++
T Consensus 404 ~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~---~~~~~~~~~~~~i 460 (677)
T 3rc3_A 404 NEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLS---LLKEILKRPVDPI 460 (677)
T ss_dssp --------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHH---HHHHHHHSCCCCC
T ss_pred ccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHH---HHHHHHhcCcchh
Confidence 7789999999999999997632 44445555333 3444454444443
No 126
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.11 E-value=0.0002 Score=64.70 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=35.7
Q ss_pred eeeecCCCC-ChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 93 AVINFDYPN-SSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 93 ~~~~~~lP~-~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.+++||.|. +...|.||+||+||.|..|.+++++.|.+......+
T Consensus 660 ~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 660 VMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp EEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 688999986 567788999999999999999999886554433333
No 127
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.00029 Score=65.27 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=32.8
Q ss_pred eeee----cCC----CCChhHHHHhhccCCCCCC--CCceEEEECCC
Q psy7691 93 AVIN----FDY----PNSSEDYIHRIGRTGRCAS--SGTAYTFFTPN 129 (165)
Q Consensus 93 ~~~~----~~l----P~~~~~~i~r~gr~~r~~~--~g~~~~~~~p~ 129 (165)
.|++ ||. |.+..+|+||+||+||.|. .|.+++++.+.
T Consensus 453 vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 453 VVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred EEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 5888 999 8899999999999999996 58888888876
No 128
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.05 E-value=0.00026 Score=65.81 Aligned_cols=70 Identities=16% Similarity=-0.041 Sum_probs=51.2
Q ss_pred CCchHHHHHHHHHHc--------------CCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEEC
Q psy7691 62 EPTAIQAQGWPIALS--------------GRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~--------------G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~ 127 (165)
.|++.|.+|++.++. +.+.+++++||||||++++ + .++.+.+. .....+++++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~----~-----l~~ll~~~----~~~~rvLvlv 337 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSF----K-----AARLATEL----DFIDKVFFVV 337 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHH----H-----HHHHHTTC----TTCCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHH----H-----HHHHHHhc----CCCceEEEEe
Confidence 489999999998865 3689999999999999864 3 33333221 1234788899
Q ss_pred CCcHHHHHHHHHHHHhcC
Q psy7691 128 PNNGKQAKELIAVLTEAS 145 (165)
Q Consensus 128 p~~~~~~~~i~~~l~~~~ 145 (165)
|+ ++++.|+.+.+..-.
T Consensus 338 pr-~eL~~Q~~~~f~~f~ 354 (1038)
T 2w00_A 338 DR-KDLDYQTMKEYQRFS 354 (1038)
T ss_dssp CG-GGCCHHHHHHHHTTS
T ss_pred Cc-HHHHHHHHHHHHHhc
Confidence 87 788888877766543
No 129
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.02 E-value=0.00026 Score=59.41 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=28.3
Q ss_pred eeeecCCCCChhHHHHhhccCCCCCCCCceEEEEC
Q psy7691 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127 (165)
Q Consensus 93 ~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~ 127 (165)
.+++|+.|.+..+|+||+||+||.|..+.+++++.
T Consensus 254 ~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 254 VSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred eeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 37899999999999999999999986544444444
No 130
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.93 E-value=0.0015 Score=57.17 Aligned_cols=66 Identities=24% Similarity=0.262 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHcCCCeeeecccCCcccc--eeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 64 TAIQAQGWPIALSGRDMVGIAQTGSGKTL--AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 64 t~~Q~~a~~~~l~G~di~~~a~tgsGKt~--~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
++.|..|++.++.+.++++++++|+|||. +++ ++ .+.+... ..+..+++++|+ ...+.++.+.+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~l---l~-----~l~~~~~-----~~~~~vll~APT-g~AA~~L~e~~ 216 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKL---LA-----ALIQMAD-----GERCRIRLAAPT-GKAAARLTESL 216 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHH---HH-----HHHHTCS-----SCCCCEEEEBSS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHH---HH-----HHHHhhh-----cCCCeEEEEeCC-hhHHHHHHHHH
Confidence 68899999999999999999999999994 444 44 4444421 235678889999 77788887766
Q ss_pred Hh
Q psy7691 142 TE 143 (165)
Q Consensus 142 ~~ 143 (165)
..
T Consensus 217 ~~ 218 (608)
T 1w36_D 217 GK 218 (608)
T ss_dssp TH
T ss_pred HH
Confidence 53
No 131
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=96.82 E-value=0.0004 Score=54.95 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=47.1
Q ss_pred CCccccccC-CCcHHHHHHHHhC-CCCCC-------chHHHHHHHHHHcCC--Ceeeec--ccCCcccc----eeeecCC
Q psy7691 37 CPTQELTEG-CFPNAVLQHLKGQ-GFEEP-------TAIQAQGWPIALSGR--DMVGIA--QTGSGKTL----AVINFDY 99 (165)
Q Consensus 37 ~~i~~f~~l-~l~~~l~~~l~~~-g~~~~-------t~~Q~~a~~~~l~G~--di~~~a--~tgsGKt~----~~~~~~l 99 (165)
..++.|++. ...+.+...|... |+... ......++..+..|. .++.++ .-|.|-.+ .+++||+
T Consensus 113 ~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 113 DKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR 192 (271)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSC
T ss_pred CeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECC
Confidence 346777765 5666677777663 66432 123334566676663 323222 22344332 6899999
Q ss_pred CCChhHHHHhhccCCCCCCCCce--EEEECCCc
Q psy7691 100 PNSSEDYIHRIGRTGRCASSGTA--YTFFTPNN 130 (165)
Q Consensus 100 P~~~~~~i~r~gr~~r~~~~g~~--~~~~~p~~ 130 (165)
|-++..|+||+||++|.|..+.+ +.+++..+
T Consensus 193 ~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 193 WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CSCTTTC--------------CCEEEEEEETTS
T ss_pred CCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 99999999999999999987765 44555554
No 132
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.00026 Score=66.16 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=28.4
Q ss_pred eeeecCCC--------CChhHHHHhhccCCCCC--CCCceEEEECCC
Q psy7691 93 AVINFDYP--------NSSEDYIHRIGRTGRCA--SSGTAYTFFTPN 129 (165)
Q Consensus 93 ~~~~~~lP--------~~~~~~i~r~gr~~r~~--~~g~~~~~~~p~ 129 (165)
.|++|+.| .+..+|+||+||+||.| ..|.+++++.+.
T Consensus 551 ~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 551 VVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp EEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred EEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 57877664 35667999999999999 566677777665
No 133
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.65 E-value=0.00023 Score=64.14 Aligned_cols=36 Identities=28% Similarity=0.570 Sum_probs=31.1
Q ss_pred eeeecCC------------------CCChhHHHHhhccCCCCCCCCceEEEECCC
Q psy7691 93 AVINFDY------------------PNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129 (165)
Q Consensus 93 ~~~~~~l------------------P~~~~~~i~r~gr~~r~~~~g~~~~~~~p~ 129 (165)
.|++|++ |.+..+|+||+||+||. ..|.++.++++.
T Consensus 390 ~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 390 YVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp EEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred EEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 7899888 88999999999999999 788888777644
No 134
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.64 E-value=0.00067 Score=57.37 Aligned_cols=90 Identities=17% Similarity=0.074 Sum_probs=56.2
Q ss_pred CccccccCCCcHHHHHHHHhCCCC------CCch-HHHHHHHHHHcCC-Ceeeec-c-cCCcc----cceeeecCCCCCh
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFE------EPTA-IQAQGWPIALSGR-DMVGIA-Q-TGSGK----TLAVINFDYPNSS 103 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~------~~t~-~Q~~a~~~~l~G~-di~~~a-~-tgsGK----t~~~~~~~lP~~~ 103 (165)
.++.|....-++.+.+.|.+.|.. ..+. .+.+.+..+..|. +++++. . -+.|= ...+++++.|.+.
T Consensus 350 ~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~ 429 (510)
T 2oca_A 350 AFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSK 429 (510)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSC
T ss_pred eEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCH
Confidence 456676665666788888876442 1122 2333444444553 444333 1 12221 1268899999999
Q ss_pred hHHHHhhccCCCCCCCCceEEEEC
Q psy7691 104 EDYIHRIGRTGRCASSGTAYTFFT 127 (165)
Q Consensus 104 ~~~i~r~gr~~r~~~~g~~~~~~~ 127 (165)
.+|+|++||+||.|..+..+.++.
T Consensus 430 ~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 430 IIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999998875555554
No 135
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.56 E-value=0.00087 Score=59.31 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcC-CCeeeeccc-CCcccc----eeee----cC-------CCCChhHHHHhhccCCCCCC--CCceEEEE
Q psy7691 66 IQAQGWPIALSG-RDMVGIAQT-GSGKTL----AVIN----FD-------YPNSSEDYIHRIGRTGRCAS--SGTAYTFF 126 (165)
Q Consensus 66 ~Q~~a~~~~l~G-~di~~~a~t-gsGKt~----~~~~----~~-------lP~~~~~~i~r~gr~~r~~~--~g~~~~~~ 126 (165)
.|......+..| ..++++..+ +.|-++ .|++ || .|.+..+|+||+||+||.|. .|.++.++
T Consensus 326 ~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 405 (715)
T 2va8_A 326 LRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVV 405 (715)
T ss_dssp HHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 344444445555 344433322 233222 5777 88 89999999999999999984 66677777
Q ss_pred CCCc
Q psy7691 127 TPNN 130 (165)
Q Consensus 127 ~p~~ 130 (165)
.+.+
T Consensus 406 ~~~~ 409 (715)
T 2va8_A 406 RDKE 409 (715)
T ss_dssp SCGG
T ss_pred CCch
Confidence 6653
No 136
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.56 E-value=0.00074 Score=59.89 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcC-CCeeeeccc-CCcccc----eeee----cC----CCCChhHHHHhhccCCCCCC--CCceEEEECCC
Q psy7691 66 IQAQGWPIALSG-RDMVGIAQT-GSGKTL----AVIN----FD----YPNSSEDYIHRIGRTGRCAS--SGTAYTFFTPN 129 (165)
Q Consensus 66 ~Q~~a~~~~l~G-~di~~~a~t-gsGKt~----~~~~----~~----lP~~~~~~i~r~gr~~r~~~--~g~~~~~~~p~ 129 (165)
.+......+..| .+++++..+ +.|-++ .|++ || .|.+..+|+||+||+||.|. .|.+++++++.
T Consensus 308 ~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 387 (720)
T 2zj8_A 308 ERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD 387 (720)
T ss_dssp HHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSS
T ss_pred HHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCc
Confidence 344445555555 345444333 233222 4676 77 58889999999999999984 57788887776
Q ss_pred c
Q psy7691 130 N 130 (165)
Q Consensus 130 ~ 130 (165)
+
T Consensus 388 ~ 388 (720)
T 2zj8_A 388 D 388 (720)
T ss_dssp C
T ss_pred c
Confidence 5
No 137
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.52 E-value=0.00092 Score=55.95 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=53.3
Q ss_pred CCccccccC-CCcHHHHHHHHhCCC--CCCchHHHHHHHHHHcCC-Ceeeeccc-CCccc----ceeeecCCCCChhHHH
Q psy7691 37 CPTQELTEG-CFPNAVLQHLKGQGF--EEPTAIQAQGWPIALSGR-DMVGIAQT-GSGKT----LAVINFDYPNSSEDYI 107 (165)
Q Consensus 37 ~~i~~f~~l-~l~~~l~~~l~~~g~--~~~t~~Q~~a~~~~l~G~-di~~~a~t-gsGKt----~~~~~~~lP~~~~~~i 107 (165)
..++.|.+. ...+.+.+.|.-..+ ..+...+.+.+..+..|. +++++... +.|=. ..+++||.|.+...|+
T Consensus 350 ~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~ 429 (472)
T 2fwr_A 350 DKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYI 429 (472)
T ss_dssp SCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHH
T ss_pred CcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHH
Confidence 345566553 455555555532222 223344555566665553 44432211 23322 2689999999999999
Q ss_pred HhhccCCCCCCC-CceEE--EECCC
Q psy7691 108 HRIGRTGRCASS-GTAYT--FFTPN 129 (165)
Q Consensus 108 ~r~gr~~r~~~~-g~~~~--~~~p~ 129 (165)
||+||++|.|.. +.+++ +++..
T Consensus 430 Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 430 QRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HHHhhccCCCCCCceEEEEEEEeCC
Confidence 999999999954 44443 44433
No 138
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.13 E-value=0.0017 Score=56.11 Aligned_cols=90 Identities=10% Similarity=0.038 Sum_probs=55.3
Q ss_pred Ccccccc-CCCcHHHHHHHHhCCC-------------CCCchH-HHHHHHHHHcCC-C---eeeec-ccCCccc----ce
Q psy7691 38 PTQELTE-GCFPNAVLQHLKGQGF-------------EEPTAI-QAQGWPIALSGR-D---MVGIA-QTGSGKT----LA 93 (165)
Q Consensus 38 ~i~~f~~-l~l~~~l~~~l~~~g~-------------~~~t~~-Q~~a~~~~l~G~-d---i~~~a-~tgsGKt----~~ 93 (165)
.++.|.. ...++.+.+.|.+.+. ..-++. ....+..+..|. + ++++. .-+.|=. ..
T Consensus 441 k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~ 520 (590)
T 3h1t_A 441 KTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKN 520 (590)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEE
T ss_pred cEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeE
Confidence 3445554 4566777777765432 112222 445666666663 2 44432 3345532 36
Q ss_pred eeecCCCCChhHHHHhhccCCCCCC--CCceEEEEC
Q psy7691 94 VINFDYPNSSEDYIHRIGRTGRCAS--SGTAYTFFT 127 (165)
Q Consensus 94 ~~~~~lP~~~~~~i~r~gr~~r~~~--~g~~~~~~~ 127 (165)
+++|+.|.+...|+|++||++|.+. ....++++.
T Consensus 521 Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 521 VVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp EEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred EEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 8899999999999999999999886 344444544
No 139
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.92 E-value=0.0024 Score=56.49 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCC-Ceeeeccc-CCcccc----eeee----cC---CCCChhHHHHhhccCCCCCC--CCceEEEECCCc
Q psy7691 66 IQAQGWPIALSGR-DMVGIAQT-GSGKTL----AVIN----FD---YPNSSEDYIHRIGRTGRCAS--SGTAYTFFTPNN 130 (165)
Q Consensus 66 ~Q~~a~~~~l~G~-di~~~a~t-gsGKt~----~~~~----~~---lP~~~~~~i~r~gr~~r~~~--~g~~~~~~~p~~ 130 (165)
.|......+..|. .++++..+ +.|-++ .|++ || .|.+..+|+||+||+||.|. .|.++.++.+.+
T Consensus 310 ~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 310 QRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 3444455566663 45444333 234332 4666 55 68889999999999999984 666777777664
No 140
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=95.71 E-value=0.0057 Score=56.60 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=20.6
Q ss_pred CCChhHHHHhhccCCCCCCCCc--eEEEE
Q psy7691 100 PNSSEDYIHRIGRTGRCASSGT--AYTFF 126 (165)
Q Consensus 100 P~~~~~~i~r~gr~~r~~~~g~--~~~~~ 126 (165)
|.+..+|+||+||+||.|..+. ++++.
T Consensus 461 ~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 461 ELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp ECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 4489999999999999995444 44444
No 141
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.62 E-value=0.01 Score=49.83 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=44.5
Q ss_pred CCchHHHHHHHHH----HcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHH
Q psy7691 62 EPTAIQAQGWPIA----LSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137 (165)
Q Consensus 62 ~~t~~Q~~a~~~~----l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i 137 (165)
.+.|.|.++++.+ ..|.+++..++||+|||+..+ . ++....+.+ ....+++++|.. ++.|.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai----~-----~i~~~~~~~----~~~~~LIv~P~~--l~~qw 101 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTI----A-----VFSDAKKEN----ELTPSLVICPLS--VLKNW 101 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHH----H-----HHHHHHHTT----CCSSEEEEECST--THHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHH----H-----HHHHHHhcC----CCCCEEEEccHH--HHHHH
Confidence 4889999998765 467889999999999999755 2 344332211 123578888863 44555
Q ss_pred HHHHHh
Q psy7691 138 IAVLTE 143 (165)
Q Consensus 138 ~~~l~~ 143 (165)
.+.+..
T Consensus 102 ~~e~~~ 107 (500)
T 1z63_A 102 EEELSK 107 (500)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 142
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.52 E-value=0.0063 Score=51.18 Aligned_cols=93 Identities=14% Similarity=0.049 Sum_probs=55.5
Q ss_pred CccccccC-CCcHHHHHHHHhC-CCCCC-------chHHHHHHHHHHcCCC---eeee-cccCCcccc----eeeecCCC
Q psy7691 38 PTQELTEG-CFPNAVLQHLKGQ-GFEEP-------TAIQAQGWPIALSGRD---MVGI-AQTGSGKTL----AVINFDYP 100 (165)
Q Consensus 38 ~i~~f~~l-~l~~~l~~~l~~~-g~~~~-------t~~Q~~a~~~~l~G~d---i~~~-a~tgsGKt~----~~~~~~lP 100 (165)
.++.|.+. ...+.+.+.|... |+... .....+.+..+..|.+ ++++ ..-|.|-.+ .+++||+|
T Consensus 343 k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~ 422 (500)
T 1z63_A 343 KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRW 422 (500)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCC
T ss_pred cEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCC
Confidence 45666664 4556666667653 55431 2334456666777632 3333 223345333 68999999
Q ss_pred CChhHHHHhhccCCCCCCCCce--EEEECCCc
Q psy7691 101 NSSEDYIHRIGRTGRCASSGTA--YTFFTPNN 130 (165)
Q Consensus 101 ~~~~~~i~r~gr~~r~~~~g~~--~~~~~p~~ 130 (165)
-++..|+|++||++|.|....+ +-+++..+
T Consensus 423 ~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 423 WNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp SCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred CCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999999999999999987765 33444443
No 143
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.37 E-value=0.0067 Score=56.94 Aligned_cols=91 Identities=10% Similarity=-0.073 Sum_probs=55.1
Q ss_pred cccccc-CCCcHHHHHHHHhC--CC------CCCchH-HHHHHHHHHcC-CCeeeeccc-CCccc----ceeeecCC-CC
Q psy7691 39 TQELTE-GCFPNAVLQHLKGQ--GF------EEPTAI-QAQGWPIALSG-RDMVGIAQT-GSGKT----LAVINFDY-PN 101 (165)
Q Consensus 39 i~~f~~-l~l~~~l~~~l~~~--g~------~~~t~~-Q~~a~~~~l~G-~di~~~a~t-gsGKt----~~~~~~~l-P~ 101 (165)
+..|.. ..-.+.+.+.|.+. ++ ...+.. +.+.+..+..| .+++++... +.|=. ..++.++. +.
T Consensus 815 vlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~ 894 (1151)
T 2eyq_A 815 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 894 (1151)
T ss_dssp EEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSS
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCC
Confidence 444543 45667777777664 33 222333 33455555555 355544322 23321 14565655 34
Q ss_pred ChhHHHHhhccCCCCCCCCceEEEECCC
Q psy7691 102 SSEDYIHRIGRTGRCASSGTAYTFFTPN 129 (165)
Q Consensus 102 ~~~~~i~r~gr~~r~~~~g~~~~~~~p~ 129 (165)
+..+|.||+||+||.|..|.+++++.+.
T Consensus 895 ~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 895 GLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp CHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 6788999999999999999999888764
No 144
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=95.03 E-value=0.026 Score=50.90 Aligned_cols=68 Identities=28% Similarity=0.367 Sum_probs=52.0
Q ss_pred hCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHH
Q psy7691 57 GQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKE 136 (165)
Q Consensus 57 ~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~ 136 (165)
..|.+ |+++|..+.-.+..|+ ++.-.||+|||+++. +|. |++-+ .|..+.+++|+ +.+|.+
T Consensus 71 ~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~---lp~----~lnAL--------~G~~vhVvT~n-dyLA~r 131 (822)
T 3jux_A 71 TLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAAT---MPI----YLNAL--------IGKGVHLVTVN-DYLARR 131 (822)
T ss_dssp HTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTH---HHH----HHHHT--------TSSCEEEEESS-HHHHHH
T ss_pred HhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHH---HHH----HHHHh--------cCCceEEEecc-HHHHHh
Confidence 35886 8999999888888886 678889999999888 883 66644 24568889999 777776
Q ss_pred HHHHHHh
Q psy7691 137 LIAVLTE 143 (165)
Q Consensus 137 i~~~l~~ 143 (165)
-.+.+..
T Consensus 132 dae~m~~ 138 (822)
T 3jux_A 132 DALWMGP 138 (822)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 145
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=94.60 E-value=0.022 Score=50.00 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=59.0
Q ss_pred CccccccC-CCcHHHHHHHHhCCCCC-------CchHHHHHHHHHHcCCC---eeeec--ccCCcccc----eeeecCCC
Q psy7691 38 PTQELTEG-CFPNAVLQHLKGQGFEE-------PTAIQAQGWPIALSGRD---MVGIA--QTGSGKTL----AVINFDYP 100 (165)
Q Consensus 38 ~i~~f~~l-~l~~~l~~~l~~~g~~~-------~t~~Q~~a~~~~l~G~d---i~~~a--~tgsGKt~----~~~~~~lP 100 (165)
.++.|++. ...+.+.+.|...|+.. +.....+.+..+..|.. ++.++ .-|.|=++ .+++||+|
T Consensus 418 k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~ 497 (644)
T 1z3i_X 418 KVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPD 497 (644)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCC
T ss_pred EEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCC
Confidence 45667765 45556666677666632 12233456667777643 23222 22344332 68999999
Q ss_pred CChhHHHHhhccCCCCCCCCceEE--EECCCc
Q psy7691 101 NSSEDYIHRIGRTGRCASSGTAYT--FFTPNN 130 (165)
Q Consensus 101 ~~~~~~i~r~gr~~r~~~~g~~~~--~~~p~~ 130 (165)
-++..|.|++||+.|.|.+..+.+ +++..+
T Consensus 498 wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 498 WNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp SSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred CCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 999999999999999998766443 455543
No 146
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=94.04 E-value=0.037 Score=50.94 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=42.8
Q ss_pred CCchHHHHHHHHHHcC--CCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G--~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
.+.+.|.+++..++.. ..++.+++||+|||...+ . .++..-+.++. ..+++++|+ .++.|-.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai---~------~i~~l~~~g~~----~rvLIVvP~--sLl~Qw~~ 217 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAG---M------ILHQQLLSGAA----ERVLIIVPE--TLQHQWLV 217 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHH---H------HHHHHHHTSSC----CCEEEECCT--TTHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHH---H------HHHHHHHhCCC----CeEEEEeCH--HHHHHHHH
Confidence 4789999999887763 478889999999998665 2 33333222221 248899998 34444433
Q ss_pred HH
Q psy7691 140 VL 141 (165)
Q Consensus 140 ~l 141 (165)
-+
T Consensus 218 E~ 219 (968)
T 3dmq_A 218 EM 219 (968)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 147
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=93.65 E-value=0.021 Score=53.13 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=29.6
Q ss_pred ccceeeecCCCCChhHHHHhhccCCCCCCC----CceEEEEC
Q psy7691 90 KTLAVINFDYPNSSEDYIHRIGRTGRCASS----GTAYTFFT 127 (165)
Q Consensus 90 Kt~~~~~~~lP~~~~~~i~r~gr~~r~~~~----g~~~~~~~ 127 (165)
..+.++++|.|.....|+|++||++|.+.. |.++.++.
T Consensus 666 P~l~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 666 PTLNTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred ccccEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 345688899999999999999999998864 44454443
No 148
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.39 E-value=0.13 Score=44.94 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=47.9
Q ss_pred CCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 60 FEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 60 ~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
+....+.|..|+..++...-.++.+++|+|||..+.. .+..+-+. .+..+++++|+ ...+.++.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~---------~i~~l~~~-----~~~~ilv~a~t-n~A~~~l~~ 242 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT---------IVYHLARQ-----GNGPVLVCAPS-NIAVDQLTE 242 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH---------HHHHHHTS-----SSCCEEEEESS-HHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH---------HHHHHHHc-----CCCeEEEEeCc-HHHHHHHHH
Confidence 3456789999998888776778999999999975331 22222221 34578888888 566667766
Q ss_pred HHHhc
Q psy7691 140 VLTEA 144 (165)
Q Consensus 140 ~l~~~ 144 (165)
.+...
T Consensus 243 ~l~~~ 247 (624)
T 2gk6_A 243 KIHQT 247 (624)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 66543
No 149
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.30 E-value=0.11 Score=45.39 Aligned_cols=65 Identities=23% Similarity=0.283 Sum_probs=43.0
Q ss_pred CchHHHHHHHHHHcCCC-eeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 63 PTAIQAQGWPIALSGRD-MVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 63 ~t~~Q~~a~~~~l~G~d-i~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
..+.|.+|+..++...+ .++.+|+|||||..++. .+..+-. .|..+++++|+. ..+..|.+-+
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~---------~I~~l~~------~~~~ILv~a~TN-~AvD~i~erL 253 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE---------IILQAVK------QGLKVLCCAPSN-IAVDNLVERL 253 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH---------HHHHHHH------TTCCEEEEESSH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH---------HHHHHHh------CCCeEEEEcCch-HHHHHHHHHH
Confidence 46789999998887776 46899999999975431 2322222 234689999984 4445555444
Q ss_pred Hh
Q psy7691 142 TE 143 (165)
Q Consensus 142 ~~ 143 (165)
..
T Consensus 254 ~~ 255 (646)
T 4b3f_X 254 AL 255 (646)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 150
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=93.11 E-value=0.088 Score=47.34 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=59.9
Q ss_pred CCccccccC-CCcHHHHHHHHhCCCCC-------CchHHHHHHHHHHcCC-C---eeeec-ccCCcccc----eeeecCC
Q psy7691 37 CPTQELTEG-CFPNAVLQHLKGQGFEE-------PTAIQAQGWPIALSGR-D---MVGIA-QTGSGKTL----AVINFDY 99 (165)
Q Consensus 37 ~~i~~f~~l-~l~~~l~~~l~~~g~~~-------~t~~Q~~a~~~~l~G~-d---i~~~a-~tgsGKt~----~~~~~~l 99 (165)
..++.|++. .+...+...|...|+.. +...+..++..+..+. + ++++. .-|.|=++ .+++||.
T Consensus 573 ~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~ 652 (800)
T 3mwy_W 573 HRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDS 652 (800)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSC
T ss_pred CeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecC
Confidence 357788876 56667777787777743 2233444555555432 2 22222 22344322 6899999
Q ss_pred CCChhHHHHhhccCCCCCCCCceEE--EECCCc
Q psy7691 100 PNSSEDYIHRIGRTGRCASSGTAYT--FFTPNN 130 (165)
Q Consensus 100 P~~~~~~i~r~gr~~r~~~~g~~~~--~~~p~~ 130 (165)
|-++..++|++||+.|.|.+..+.+ +++..+
T Consensus 653 ~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 653 DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred CCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 9999999999999999998766543 455543
No 151
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.73 E-value=0.11 Score=43.51 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=44.9
Q ss_pred HhCCCCCCchHHHHHHHHHHcC----C-CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc
Q psy7691 56 KGQGFEEPTAIQAQGWPIALSG----R-DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130 (165)
Q Consensus 56 ~~~g~~~~t~~Q~~a~~~~l~G----~-di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~ 130 (165)
.-+.|..+++.|.+++..++.. . .+++.|+.|||||.... . .+..+.+.+. ..+++++|+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~------~---~~~~l~~~~~-----~~il~~a~T- 83 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK------F---IIEALISTGE-----TGIILAAPT- 83 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH------H---HHHHHHHTTC-----CCEEEEESS-
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH------H---HHHHHHhcCC-----ceEEEecCc-
Confidence 3356888999999998876432 3 78899999999996432 0 2222222111 367888888
Q ss_pred HHHHHHHHHHH
Q psy7691 131 GKQAKELIAVL 141 (165)
Q Consensus 131 ~~~~~~i~~~l 141 (165)
...+..+.+.+
T Consensus 84 ~~Aa~~l~~~~ 94 (459)
T 3upu_A 84 HAAKKILSKLS 94 (459)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 45555555444
No 152
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=92.70 E-value=0.1 Score=45.11 Aligned_cols=68 Identities=22% Similarity=0.207 Sum_probs=42.7
Q ss_pred CCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCC-CCCCCceEEEECCCcHHHHHHHHH
Q psy7691 61 EEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGR-CASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 61 ~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r-~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
..+++.|.+++. .....+++.|+.|||||... ++|+...-. .+.....+++++++ ...+.++.+
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l------------~~ri~~l~~~~~~~~~~iL~ltft-~~aa~e~~~ 72 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVL------------VHRIAWLMSVENCSPYSIMAVTFT-NKAAAEMRH 72 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHH------------HHHHHHHHHTSCCCGGGEEEEESS-HHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHH------------HHHHHHHHHhCCCChhhEEEEecc-HHHHHHHHH
Confidence 357889999875 33557889999999999743 333322111 12234578889988 555555555
Q ss_pred HHHh
Q psy7691 140 VLTE 143 (165)
Q Consensus 140 ~l~~ 143 (165)
-+..
T Consensus 73 rl~~ 76 (647)
T 3lfu_A 73 RIGQ 76 (647)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 153
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.56 E-value=0.12 Score=48.72 Aligned_cols=66 Identities=23% Similarity=0.175 Sum_probs=43.7
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccC---CCCCCCCceEEEECCCcHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRT---GRCASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~---~r~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
.+|+-|.++|. ..+.++++.|..|||||.. .++|+.+- ++.+.....+++++.+ ...+..+.
T Consensus 10 ~~t~eQ~~~i~--~~~~~~~v~a~AGSGKT~v------------l~~ri~~ll~~~~~~~~~~~il~~Tft-~~aa~e~~ 74 (1232)
T 3u4q_A 10 TWTDDQWNAIV--STGQDILVAAAAGSGKTAV------------LVERMIRKITAEENPIDVDRLLVVTFT-NASAAEMK 74 (1232)
T ss_dssp CCCHHHHHHHH--CCSSCEEEEECTTCCHHHH------------HHHHHHHHHSCSSSCCCGGGEEEECSS-HHHHHHHH
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHH------------HHHHHHHHHhcCCCCCCccceEEEecc-HHHHHHHH
Confidence 47899999874 4588999999999999974 24444322 2222345579999999 44444444
Q ss_pred HHHH
Q psy7691 139 AVLT 142 (165)
Q Consensus 139 ~~l~ 142 (165)
+-+.
T Consensus 75 ~ri~ 78 (1232)
T 3u4q_A 75 HRIA 78 (1232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 154
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.56 E-value=0.19 Score=45.42 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=48.4
Q ss_pred CCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHH
Q psy7691 61 EEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAV 140 (165)
Q Consensus 61 ~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~ 140 (165)
....+.|.+|+..++.+.-.++.+++|+|||..+.. .+..+-+. .+..+++++|+ ...+.++.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~---------~i~~l~~~-----~~~~ilv~a~t-n~A~~~l~~~ 419 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT---------IVYHLARQ-----GNGPVLVCAPS-NIAVDQLTEK 419 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH---------HHHHHHTT-----CSSCEEEEESS-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH---------HHHHHHHc-----CCCcEEEEcCc-HHHHHHHHHH
Confidence 346789999999888776778999999999975431 22222221 34578888998 5666777776
Q ss_pred HHhcC
Q psy7691 141 LTEAS 145 (165)
Q Consensus 141 l~~~~ 145 (165)
+...+
T Consensus 420 l~~~g 424 (800)
T 2wjy_A 420 IHQTG 424 (800)
T ss_dssp HHTTT
T ss_pred HHHhC
Confidence 65543
No 155
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.78 E-value=0.17 Score=43.99 Aligned_cols=63 Identities=22% Similarity=0.163 Sum_probs=44.5
Q ss_pred CchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 63 ~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
.++.|..++..++.+..+++.++.|+|||..+.. .+..... .|..+++++|+ ...+..+.+.+
T Consensus 190 L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~---------l~~~l~~------~g~~Vl~~ApT-~~Aa~~L~e~~ 252 (574)
T 3e1s_A 190 LSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKA---------VADLAES------LGLEVGLCAPT-GKAARRLGEVT 252 (574)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHH---------HHHHHHH------TTCCEEEEESS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHH---------HHHHHHh------cCCeEEEecCc-HHHHHHhHhhh
Confidence 6789999999999888899999999999974320 2222211 34567888898 55566665543
No 156
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=91.74 E-value=0.4 Score=43.05 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=50.7
Q ss_pred CccCChHhhcCCHHHHHHHHhhcCcEE---ecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHH----c
Q psy7691 4 HAKTQERAARLSESEVEAFRQKKEITV---KGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIAL----S 76 (165)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l----~ 76 (165)
+|-....+.....+.++.|........ .....+.....|..+...+... .+. .+.+.|.+++..++ .
T Consensus 181 tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~~-~Lr~yQ~egv~~l~~~~~~ 254 (800)
T 3mwy_W 181 TWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI-----KGG-ELRDFQLTGINWMAFLWSK 254 (800)
T ss_dssp BCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC-----CSS-CCCTHHHHHHHHHHHHHTT
T ss_pred cccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc-----CCC-CcCHHHHHHHHHHHHHhhc
Confidence 344445566677788888865332111 1111122233455443322211 122 57889999987554 8
Q ss_pred CCCeeeecccCCcccceee
Q psy7691 77 GRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~~ 95 (165)
|...+....+|.|||+..+
T Consensus 255 ~~~~ILademGlGKT~~ai 273 (800)
T 3mwy_W 255 GDNGILADEMGLGKTVQTV 273 (800)
T ss_dssp TCCEEECCCTTSSTTHHHH
T ss_pred CCCEEEEeCCCcchHHHHH
Confidence 8899999999999998654
No 157
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.37 E-value=0.18 Score=45.66 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=46.0
Q ss_pred CCCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 60 FEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 60 ~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
+....+.|.+|+..++.+.-.++.|++|+|||..+.. .+.++-+. .+..+++++|+ ...+..+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~---------~i~~l~~~-----~~~~ILv~a~t-n~A~d~l~~ 422 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT---------IVYHLSKI-----HKDRILVCAPS-NVAVDHLAA 422 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH---------HHHHHHHH-----HCCCEEEEESS-HHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH---------HHHHHHhC-----CCCeEEEEcCc-HHHHHHHHH
Confidence 3446789999998888766678999999999975431 22222110 23468888888 555556655
Q ss_pred HHHhc
Q psy7691 140 VLTEA 144 (165)
Q Consensus 140 ~l~~~ 144 (165)
.+...
T Consensus 423 rL~~~ 427 (802)
T 2xzl_A 423 KLRDL 427 (802)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 55443
No 158
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=90.76 E-value=0.24 Score=43.75 Aligned_cols=67 Identities=27% Similarity=0.364 Sum_probs=46.2
Q ss_pred CCCCCCchHHHHHHHHHHc----CC-CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHH
Q psy7691 58 QGFEEPTAIQAQGWPIALS----GR-DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGK 132 (165)
Q Consensus 58 ~g~~~~t~~Q~~a~~~~l~----G~-di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~ 132 (165)
.+| .|+..|..++..+.. |. .....+.||||||+.+.+ .+.+.++ .+++++|+ ..
T Consensus 5 ~~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~---------~~~~~~~---------~~lvv~~~-~~ 64 (664)
T 1c4o_A 5 RGP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK---------VIEALGR---------PALVLAPN-KI 64 (664)
T ss_dssp CSC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH---------HHHHHTC---------CEEEEESS-HH
T ss_pred CCC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH---------HHHHhCC---------CEEEEecC-HH
Confidence 367 699999998876543 32 356789999999986541 4455433 37888888 66
Q ss_pred HHHHHHHHHHhc
Q psy7691 133 QAKELIAVLTEA 144 (165)
Q Consensus 133 ~~~~i~~~l~~~ 144 (165)
++.|+..-+..-
T Consensus 65 ~A~ql~~el~~~ 76 (664)
T 1c4o_A 65 LAAQLAAEFREL 76 (664)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 159
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=89.72 E-value=0.27 Score=43.03 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=43.2
Q ss_pred CCchHHHHHHHHHH---------cCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCC-CCCCceEEEECCCc-
Q psy7691 62 EPTAIQAQGWPIAL---------SGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRC-ASSGTAYTFFTPNN- 130 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l---------~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~-~~~g~~~~~~~p~~- 130 (165)
.+.|.|.+++..+. .+...+....+|.|||+..+ . ++...-+.+.. +.....+++++|..
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i---~------~i~~l~~~~~~~~p~~~~~LiV~P~sl 125 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCI---T------LIWTLLKQSPDCKPEIDKVIVVSPSSL 125 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHH---H------HHHHHHHCCTTSSCSCSCEEEEECHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHH---H------HHHHHHHhCccccCCCCcEEEEecHHH
Confidence 47889999988763 34567888999999998665 1 33333222211 12234578888873
Q ss_pred -HHHHHHHHHHHH
Q psy7691 131 -GKQAKELIAVLT 142 (165)
Q Consensus 131 -~~~~~~i~~~l~ 142 (165)
.....++.+++.
T Consensus 126 l~qW~~E~~~~~~ 138 (644)
T 1z3i_X 126 VRNWYNEVGKWLG 138 (644)
T ss_dssp HHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcC
Confidence 223344555543
No 160
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=89.31 E-value=0.21 Score=43.77 Aligned_cols=67 Identities=22% Similarity=0.230 Sum_probs=42.1
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCC-CCCCCceEEEECCCcHHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGR-CASSGTAYTFFTPNNGKQAKELIAV 140 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r-~~~~g~~~~~~~p~~~~~~~~i~~~ 140 (165)
.+++.|.+++.. .+..+++.|..|||||... ++|+.+.-. .+.....+++++.+ +..+..+.+-
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l------------~~ri~~ll~~~~~~~~~IL~lTfT-~~Aa~em~~R 66 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVI------------TNKIAHLIRGCGYQARHIAAVTFT-NKAAREMKER 66 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHH------------HHHHHHHHHHHCCCGGGEEEEESS-HHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHH------------HHHHHHHHHhcCCCHHHeEEEecc-HHHHHHHHHH
Confidence 367899998753 3567889999999999743 233221111 02233468888888 5566666655
Q ss_pred HHh
Q psy7691 141 LTE 143 (165)
Q Consensus 141 l~~ 143 (165)
+..
T Consensus 67 l~~ 69 (673)
T 1uaa_A 67 VGQ 69 (673)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 161
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=87.97 E-value=0.56 Score=41.63 Aligned_cols=63 Identities=22% Similarity=0.147 Sum_probs=39.3
Q ss_pred CCCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCC-CCCCCceEEEECCCcHHHHHHHH
Q psy7691 61 EEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGR-CASSGTAYTFFTPNNGKQAKELI 138 (165)
Q Consensus 61 ~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r-~~~~g~~~~~~~p~~~~~~~~i~ 138 (165)
..+++.|.+|+.. ....+++.|..|||||... ++|+.+.-. .+-....+++++-+ ...+..+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL------------~~ri~~ll~~~~~~p~~IL~vTFT-nkAA~Em~ 73 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVL------------THRIAYLMAEKHVAPWNILAITFT-NKAAREMR 73 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHH------------HHHHHHHHHTTCCCGGGEEEEESS-HHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHH------------HHHHHHHHHhcCCCHHHeEEEecc-HHHHHHHH
Confidence 4578999998753 3568899999999999743 333322111 12234468888888 43333333
No 162
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=80.82 E-value=1.2 Score=31.76 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.6
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|..++..+++|+|||..
T Consensus 37 ~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp GCCEEEECCSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999974
No 163
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=74.46 E-value=1.9 Score=29.82 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=16.6
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+..+..++..+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44567899999999999863
No 164
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=73.40 E-value=1.2 Score=34.43 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=16.0
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+..|.-+..++++|||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34566788999999999874
No 165
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=73.12 E-value=2 Score=29.66 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=16.8
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
...+..++..+++|+|||..
T Consensus 21 a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHH
T ss_pred hCCCCCEEEECCCCCCHHHH
Confidence 34667899999999999974
No 166
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=69.67 E-value=4.1 Score=34.78 Aligned_cols=20 Identities=25% Similarity=0.229 Sum_probs=17.2
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+-.|..++++++||||||..
T Consensus 257 v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHH
T ss_pred HhCCCEEEEECCCCCCHHHH
Confidence 46788899999999999873
No 167
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=66.85 E-value=2.8 Score=33.74 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=19.7
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.+ +++-++||||||....
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEec
Confidence 345678877 7899999999997653
No 168
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=66.72 E-value=2.8 Score=34.29 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=19.2
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
++.++.|.+ |++-++||||||...
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 445688977 789999999999654
No 169
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=66.55 E-value=6 Score=34.72 Aligned_cols=64 Identities=23% Similarity=0.338 Sum_probs=42.1
Q ss_pred CCchHHHHHHHHHH----cCC-CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHH
Q psy7691 62 EPTAIQAQGWPIAL----SGR-DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKE 136 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l----~G~-di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~ 136 (165)
.|+.-|..++..+. .|. .....+.||||||+.+.+ .+.+..| .+++++++ ..++.+
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~---------~~~~~~~---------~~lvv~~~-~~~A~~ 72 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN---------LIKEVNK---------PTLVIAHN-KTLAGQ 72 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH---------HHHHHCC---------CEEEECSS-HHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH---------HHHHhCC---------CEEEEECC-HHHHHH
Confidence 37778887776543 343 356789999999986541 3444433 37888888 666666
Q ss_pred HHHHHHhc
Q psy7691 137 LIAVLTEA 144 (165)
Q Consensus 137 i~~~l~~~ 144 (165)
+..-+..-
T Consensus 73 l~~el~~~ 80 (661)
T 2d7d_A 73 LYSEFKEF 80 (661)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 170
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=65.29 E-value=2.8 Score=34.06 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=19.0
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
+..++.|.+ |++-++||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344678877 779999999999754
No 171
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=64.94 E-value=5.8 Score=29.46 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=26.2
Q ss_pred CCCCchHHHHHHHHHHcCCCeeeecccCCccccee
Q psy7691 60 FEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 60 ~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~ 94 (165)
++-.+.-|..++.-+..|.-+..+++.|+|||..+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33334456667777788888889999999999853
No 172
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=64.86 E-value=3.2 Score=33.79 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=18.9
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
+..++.|.+ +++-++||||||...
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345678876 779999999999754
No 173
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=64.62 E-value=3.3 Score=33.95 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=19.0
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
+..++.|.+ |++-++||||||...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 344678876 779999999999764
No 174
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=64.51 E-value=3.3 Score=33.57 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=19.0
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
++.++.|.+ |++-++||||||...
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 445678877 778999999999754
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=64.50 E-value=2 Score=32.84 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=30.7
Q ss_pred CccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHH--HHcCCCeeeecccCCcccce
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI--ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~--~l~G~di~~~a~tgsGKt~~ 93 (165)
|-..|+++.-.+...+.|...-- .+. .....+.. +..+..++..+++|+|||..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE-LPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH-HHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH-HHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 45678888666666666654210 000 00011111 13456799999999999974
No 176
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=64.30 E-value=3.3 Score=33.68 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=19.1
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
++.++.|.+ |++-++||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 345678876 778999999999754
No 177
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=64.29 E-value=3.3 Score=34.04 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=18.8
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
+..++.|.+ |++-++||||||...
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 334678876 778999999999754
No 178
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=64.24 E-value=3.4 Score=33.35 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=19.7
Q ss_pred HHHHHHcCCC--eeeecccCCccccee
Q psy7691 70 GWPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 70 a~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
.+..++.|.+ +++-++||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 3455788987 779999999999754
No 179
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=64.11 E-value=3.4 Score=33.84 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=19.0
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
+..++.|.+ |++-++||||||...
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 345678876 779999999999754
No 180
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=63.66 E-value=3.5 Score=33.61 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=19.0
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
++.++.|.+ |++-++||||||...
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 345678987 678999999999754
No 181
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=63.52 E-value=3.2 Score=33.82 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=19.5
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
+..++.|.+ |++-++||||||....
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCcceEEEECCCCCCcceEee
Confidence 334678876 7799999999998654
No 182
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=62.75 E-value=3.7 Score=34.08 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=20.1
Q ss_pred HHHHHHcCCC--eeeecccCCcccceee
Q psy7691 70 GWPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 70 a~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
.+..++.|.+ |++-++||||||....
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 3455688987 6789999999997653
No 183
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=62.02 E-value=3.8 Score=34.11 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=19.7
Q ss_pred HHHHHHcCCC--eeeecccCCccccee
Q psy7691 70 GWPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 70 a~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
.+..++.|.+ |++-++||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 3455688977 778999999999754
No 184
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=61.70 E-value=3.6 Score=33.80 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=18.8
Q ss_pred HHHHcCCC--eeeecccCCcccceee
Q psy7691 72 PIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 72 ~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
..++.|.+ |++-++||||||....
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhCCceEEEEeecCCCCCcceecc
Confidence 34678876 7799999999997543
No 185
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=61.69 E-value=3.7 Score=33.48 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=18.8
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
+..++.|.+ +++-++||||||...
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 344578877 779999999999754
No 186
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=61.61 E-value=4 Score=33.35 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=19.1
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
++.++.|.+ |++-++||||||...
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 445678977 678999999999764
No 187
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=61.44 E-value=3.5 Score=33.30 Aligned_cols=20 Identities=40% Similarity=0.376 Sum_probs=17.3
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+..|..+..++++|+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 46888999999999999873
No 188
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=61.32 E-value=3.3 Score=33.79 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=19.1
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
++.++.|.+ |++-++||||||....
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 334578876 7799999999997543
No 189
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=61.18 E-value=3.8 Score=33.92 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=18.4
Q ss_pred HHHHcCCC--eeeecccCCccccee
Q psy7691 72 PIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 72 ~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
..++.|.+ |++-++||||||...
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34678876 778999999999754
No 190
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=61.08 E-value=3.4 Score=33.94 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=19.5
Q ss_pred HHHHHHcCCC--eeeecccCCccccee
Q psy7691 70 GWPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 70 a~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
.+..++.|.+ +++-++||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 3455688976 778999999998754
No 191
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=60.04 E-value=3.3 Score=33.64 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=18.8
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
+..++.|.+ |++-++||||||...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEec
Confidence 344578877 779999999999754
No 192
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=59.68 E-value=2.6 Score=29.64 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.2
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
++.-++.+++.|||||.
T Consensus 2 ~~~~i~l~G~~GsGKST 18 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSG 18 (178)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 45568899999999986
No 193
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=59.44 E-value=3.7 Score=34.22 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=18.7
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
+..++.|.+ |++-++||||||...
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 344678876 778999999999754
No 194
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=59.30 E-value=4.5 Score=33.99 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=18.5
Q ss_pred HHHHcCCC--eeeecccCCccccee
Q psy7691 72 PIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 72 ~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
..++.|.+ |++-++||||||...
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34578877 789999999999754
No 195
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=59.29 E-value=10 Score=32.61 Aligned_cols=74 Identities=22% Similarity=0.169 Sum_probs=48.1
Q ss_pred CchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHH
Q psy7691 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 63 ~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
+++.|...+..+...+-+++..+.++|||.++..+ .+..+... .+..+.++.++ .+++..+.+.+.
T Consensus 164 l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~--------~l~~~~~~-----~~~~i~~va~t-~~qA~~~~~~i~ 229 (592)
T 3cpe_A 164 LRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIF--------LAHFVCFN-----KDKAVGILAHK-GSMSAEVLDRTK 229 (592)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHH--------HHHHHHTS-----SSCEEEEEESS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhccccEEEEEEcCccChHHHHHHH--------HHHHHHhC-----CCCeEEEEECC-HHHHHHHHHHHH
Confidence 68899887766545567888999999999865421 22222221 24467777777 677776766666
Q ss_pred hcCCCCCh
Q psy7691 143 EASQPIPP 150 (165)
Q Consensus 143 ~~~~~~p~ 150 (165)
......|.
T Consensus 230 ~~i~~~p~ 237 (592)
T 3cpe_A 230 QAIELLPD 237 (592)
T ss_dssp HHHTTSCT
T ss_pred HHHHhChH
Confidence 65555553
No 196
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=59.25 E-value=2.7 Score=30.11 Aligned_cols=18 Identities=17% Similarity=0.315 Sum_probs=14.9
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-+..++++|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566678899999999874
No 197
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=59.25 E-value=11 Score=28.60 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.3
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.+..++..+++|+|||..
T Consensus 49 ~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 357899999999999873
No 198
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=59.09 E-value=3.4 Score=33.59 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=19.5
Q ss_pred HHHHHHcCCC--eeeecccCCccccee
Q psy7691 70 GWPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 70 a~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
.+..++.|.+ |++-++||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 3455678876 778999999999755
No 199
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=58.97 E-value=3.9 Score=33.83 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=18.8
Q ss_pred HHHHHcCCC--eeeecccCCccccee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
+..++.|.+ +++-++||||||...
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 344678876 789999999999754
No 200
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=58.47 E-value=4.3 Score=33.71 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.4
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-++++++||||||..
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 344578999999999873
No 201
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=58.44 E-value=3 Score=29.45 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=13.9
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.|+-++..++.|||||.
T Consensus 2 ~~~~I~i~G~~GsGKsT 18 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTT 18 (192)
T ss_dssp -CCEEEEECCTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 35678899999999986
No 202
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=58.28 E-value=4.3 Score=33.38 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=19.2
Q ss_pred HHHHHcCCC--eeeecccCCcccceee
Q psy7691 71 WPIALSGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 71 ~~~~l~G~d--i~~~a~tgsGKt~~~~ 95 (165)
+..++.|.+ |++-++||||||....
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEee
Confidence 344578876 7789999999997553
No 203
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=58.13 E-value=3 Score=30.37 Aligned_cols=19 Identities=21% Similarity=0.150 Sum_probs=16.6
Q ss_pred HHcCCCeeeecccCCcccc
Q psy7691 74 ALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~ 92 (165)
+..|.-++.+++.|+|||.
T Consensus 9 ~~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCCCEEEECCTTSCHHH
T ss_pred cccCCEEEEECCCCCCHHH
Confidence 5678889999999999976
No 204
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=58.07 E-value=1.7 Score=34.99 Aligned_cols=19 Identities=16% Similarity=-0.050 Sum_probs=15.8
Q ss_pred cCCCeeeecccCCccccee
Q psy7691 76 SGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~ 94 (165)
.+.+++..+++|+|||..+
T Consensus 44 ~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4467999999999999853
No 205
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=58.06 E-value=11 Score=32.11 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 66 IQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 66 ~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.-..+.-.+..|.+++..+++|+|||..
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3334445567888999999999999973
No 206
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=57.69 E-value=4 Score=32.61 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=17.1
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+..|..+..++++|+|||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 45788999999999999873
No 207
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=56.81 E-value=2.6 Score=29.86 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.0
Q ss_pred HHcCCCeeeecccCCcccc
Q psy7691 74 ALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~ 92 (165)
+..+..++.+++.|+|||.
T Consensus 8 ~~~~~~i~i~G~~GsGKst 26 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTT 26 (180)
T ss_dssp TCCCCCEEEECSTTSSHHH
T ss_pred cccCCeEEEEeCCCCCHHH
Confidence 3456789999999999986
No 208
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=56.75 E-value=3.9 Score=29.83 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=14.1
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|+-+..++++|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999874
No 209
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=56.73 E-value=3.4 Score=28.66 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=14.4
Q ss_pred CCeeeecccCCccccee
Q psy7691 78 RDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~ 94 (165)
..++..+++|+|||...
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 56899999999999743
No 210
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=56.34 E-value=3.4 Score=30.08 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=15.3
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.+..++..+++|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 457899999999999874
No 211
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=55.73 E-value=28 Score=27.70 Aligned_cols=74 Identities=15% Similarity=0.216 Sum_probs=57.5
Q ss_pred CCHHHHHHHHhhcCcEEecCCCCC-CccccccCCCcHHHHHHHHhCCCCC-----C--chHHHHHHHHHHcCCCeeeecc
Q psy7691 14 LSESEVEAFRQKKEITVKGNNIPC-PTQELTEGCFPNAVLQHLKGQGFEE-----P--TAIQAQGWPIALSGRDMVGIAQ 85 (165)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~~~~p~-~i~~f~~l~l~~~l~~~l~~~g~~~-----~--t~~Q~~a~~~~l~G~di~~~a~ 85 (165)
+.+..++.++++--+.+..+++|. .+..|...+.++++.+.+++.|..- | +.+|.++-.....|..++.++.
T Consensus 42 HN~~Vv~~L~~~Gv~~v~~~ev~~g~~VIirAHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~ 121 (297)
T 3dnf_A 42 HNPQEVNRLKNLGVFPSQGEEFKEGDTVIIRSHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGE 121 (297)
T ss_dssp SCHHHHHHHHHHTEEECCSSCCCTTCEEEECTTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESC
T ss_pred cCHHHHHHHHhCCCEEechhhCCCCCEEEEECCCCCHHHHHHHHHCCCEEEeCCCcchHHHHHHHHHHHhCCCEEEEEec
Confidence 566788888766555555566664 3789999999999999999999853 2 4578888778889999998887
Q ss_pred cC
Q psy7691 86 TG 87 (165)
Q Consensus 86 tg 87 (165)
.|
T Consensus 122 ~~ 123 (297)
T 3dnf_A 122 KN 123 (297)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 212
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=55.67 E-value=4.6 Score=28.13 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=14.5
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
+|.-+..+++.|||||.
T Consensus 3 ~~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCCEEEECCTTSCHHH
T ss_pred CCCeEEEECCCCCCHHH
Confidence 45678899999999986
No 213
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=55.32 E-value=3.7 Score=29.71 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=15.4
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..|..++.++++|+|||..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCCEEEEEcCCCCCHHHH
Confidence 4567889999999999873
No 214
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.29 E-value=3 Score=35.02 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=32.7
Q ss_pred CCccccccCCCcHHHHHHHHhCC---CCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 37 CPTQELTEGCFPNAVLQHLKGQG---FEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~~~l~~~g---~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.|-.+|++.+-.+...+.|.+.= +..|-.++... +---+-++..+|+|+|||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHH
Confidence 46778999877777777776531 11121111110 01124588999999999983
No 215
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=54.71 E-value=3.5 Score=29.60 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=15.6
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..|.-+..++++|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4577788999999999863
No 216
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=54.54 E-value=2.6 Score=29.89 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.5
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
+|.-++.+++.|||||.
T Consensus 3 ~g~~I~l~G~~GsGKST 19 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGT 19 (186)
T ss_dssp CEEEEEEECCTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 46678899999999986
No 217
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=54.32 E-value=2.5 Score=33.01 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=29.6
Q ss_pred CccccccCCCcHHHHHHHHhCCCCCCchHHH-HHH-HH-HHcCCCeeeecccCCcccce
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFEEPTAIQA-QGW-PI-ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~-~a~-~~-~l~G~di~~~a~tgsGKt~~ 93 (165)
|-..|+++.-.+.+.+.|.+.-- .+... ..+ .. +..+..++..+++|+|||..
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 45678888656666666654200 00000 000 00 12345689999999999973
No 218
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=54.23 E-value=4.9 Score=28.09 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.5
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|..+...+++|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577888999999999873
No 219
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=54.21 E-value=4 Score=28.02 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=11.4
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
++.++++|||||.
T Consensus 4 I~l~G~~GsGKsT 16 (179)
T 3lw7_A 4 ILITGMPGSGKSE 16 (179)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 6789999999986
No 220
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=53.98 E-value=3.3 Score=28.78 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=14.7
Q ss_pred CCCeeeecccCCccccee
Q psy7691 77 GRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~ 94 (165)
...++..+++|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 356889999999999743
No 221
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=53.76 E-value=15 Score=30.15 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=21.1
Q ss_pred CCCccccccCCCcHHHHHHHHhCCCCC
Q psy7691 36 PCPTQELTEGCFPNAVLQHLKGQGFEE 62 (165)
Q Consensus 36 p~~i~~f~~l~l~~~l~~~l~~~g~~~ 62 (165)
+.++......++.+..++.|+++||.+
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~t 106 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLHT 106 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCCB
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCCc
Confidence 345666666789999999999999976
No 222
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=53.65 E-value=7.4 Score=29.30 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.9
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..+..++..+++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3457899999999999873
No 223
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=53.38 E-value=3.3 Score=33.93 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=16.7
Q ss_pred HcCCCeeeecccCCccccee
Q psy7691 75 LSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~~ 94 (165)
....+++++++||+|||.++
T Consensus 51 ~~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGGCEEEEECTTSSHHHHH
T ss_pred cCcceEEEECCCCCCHHHHH
Confidence 34578999999999999863
No 224
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=52.33 E-value=4.3 Score=32.94 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.0
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
.-++++++||+|||.
T Consensus 41 ~lIvI~GPTgsGKTt 55 (339)
T 3a8t_A 41 KLLVLMGATGTGKSR 55 (339)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 358899999999987
No 225
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=52.27 E-value=4.5 Score=29.64 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=14.8
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-++.++|+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466688899999999863
No 226
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=51.44 E-value=7.1 Score=27.97 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=14.1
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++..+++|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6789999999999974
No 227
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=51.17 E-value=14 Score=28.00 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHcCC----CeeeecccCCcccce
Q psy7691 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSGR----DMVGIAQTGSGKTLA 93 (165)
Q Consensus 49 ~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~----di~~~a~tgsGKt~~ 93 (165)
..+.+.|+=+|+. +..+ ..++..++.+. .++..+|.|+|||..
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYF 74 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHH
Confidence 3566666655543 3333 34455566663 488999999999953
No 228
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=50.96 E-value=3.7 Score=29.41 Aligned_cols=17 Identities=35% Similarity=0.214 Sum_probs=14.8
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
+|+-|+..++.|||||.
T Consensus 3 ~~~~I~l~G~~GsGKsT 19 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTT 19 (204)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 56778899999999987
No 229
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=50.53 E-value=4.8 Score=28.41 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.8
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
+..++.++++|||||.
T Consensus 5 ~~~i~l~G~~GsGKst 20 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTS 20 (185)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4568899999999986
No 230
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=50.04 E-value=10 Score=38.93 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=30.7
Q ss_pred CcHHHHHHHHhCCCCCCchHH-HHHHH---HHHcCCCeeeecccCCccccee
Q psy7691 47 FPNAVLQHLKGQGFEEPTAIQ-AQGWP---IALSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 47 l~~~l~~~l~~~g~~~~t~~Q-~~a~~---~~l~G~di~~~a~tgsGKt~~~ 94 (165)
+...+.+.+.+.|+. +++.+ ..++. .+....-++.+++||+|||.++
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATW 940 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHH
Confidence 456677778888886 45533 22222 2233455889999999999854
No 231
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=49.40 E-value=6.3 Score=30.78 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=17.4
Q ss_pred HHHcCCCeeeecccCCcccce
Q psy7691 73 IALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 73 ~~l~G~di~~~a~tgsGKt~~ 93 (165)
.+..|.+++..+++|+|||..
T Consensus 42 ~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHH
Confidence 345678999999999999963
No 232
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=49.31 E-value=19 Score=26.72 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=35.5
Q ss_pred HcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCc-eEEEECCCcHHHHHHHHHHHHhcC-CCCCh
Q psy7691 75 LSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGT-AYTFFTPNNGKQAKELIAVLTEAS-QPIPP 150 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~-~~~~~~p~~~~~~~~i~~~l~~~~-~~~p~ 150 (165)
++|+-|+..+++|+|||...- ....+... .|. +++.--|....+...|.+++.... ..+.+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~---------~l~~~l~~------~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~ 66 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRD---------YLAERLRE------RGIEVQLTREPGGTPLAERIRELLLAPSDEPMAA 66 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHH---------HHHHHHHT------TTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCH
T ss_pred CCceEEEEEcCCCCCHHHHHH---------HHHHHHHH------cCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCH
Confidence 578888899999999987432 02222221 122 344445665566677777777653 24444
No 233
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=49.30 E-value=7.9 Score=34.22 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=19.7
Q ss_pred HHHHHHcCCC--eeeecccCCccccee
Q psy7691 70 GWPIALSGRD--MVGIAQTGSGKTLAV 94 (165)
Q Consensus 70 a~~~~l~G~d--i~~~a~tgsGKt~~~ 94 (165)
.+..++.|.+ |++-++||||||...
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 4556789987 778899999999643
No 234
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=49.16 E-value=5.2 Score=32.27 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=12.3
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
-+++++|||+|||..
T Consensus 5 ~i~i~GptgsGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCcCCHHHH
Confidence 367899999999873
No 235
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=49.15 E-value=5.2 Score=32.17 Aligned_cols=14 Identities=36% Similarity=0.385 Sum_probs=12.0
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
+++++|||+|||..
T Consensus 13 i~i~GptgsGKt~l 26 (316)
T 3foz_A 13 IFLMGPTASGKTAL 26 (316)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 67899999999863
No 236
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=48.77 E-value=4.3 Score=28.63 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=13.4
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
++.-|+..+++|||||.
T Consensus 2 ~~~~I~l~G~~GsGKsT 18 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGT 18 (196)
T ss_dssp -CEEEEEECCTTSSHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 34557889999999986
No 237
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=48.63 E-value=5.4 Score=30.33 Aligned_cols=13 Identities=38% Similarity=0.171 Sum_probs=11.4
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
++.++++|||||.
T Consensus 4 i~I~G~~GSGKST 16 (253)
T 2ze6_A 4 HLIYGPTCSGKTD 16 (253)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCcCHHH
Confidence 5789999999986
No 238
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=48.41 E-value=5.6 Score=28.46 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.8
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-+..++++|+|||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 566677899999999873
No 239
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=48.39 E-value=5.7 Score=27.65 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=11.5
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
++.+++.|||||.
T Consensus 5 I~i~G~~GsGKST 17 (181)
T 1ly1_A 5 ILTIGCPGSGKST 17 (181)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEecCCCCCHHH
Confidence 6789999999986
No 240
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=48.35 E-value=4.1 Score=29.24 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=14.4
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.|.-|+..++.|||||.
T Consensus 3 ~~~~I~i~G~~GsGKsT 19 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSS 19 (213)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCeEEEEEcCCCCCHHH
Confidence 46668899999999987
No 241
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=48.23 E-value=17 Score=28.81 Aligned_cols=18 Identities=44% Similarity=0.591 Sum_probs=15.2
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.+..++..+++|+|||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 346799999999999984
No 242
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=48.13 E-value=5.4 Score=30.64 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.9
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++..+++|+|||..
T Consensus 68 ~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999974
No 243
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=47.87 E-value=7.1 Score=28.87 Aligned_cols=20 Identities=20% Similarity=0.076 Sum_probs=15.7
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+..|.-+..++++|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45688888999999999874
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=47.54 E-value=4.7 Score=28.60 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=14.8
Q ss_pred HcCCCeeeecccCCcccc
Q psy7691 75 LSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~ 92 (165)
..|.-+..+++.|+|||.
T Consensus 7 ~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CTTEEEEEEECTTSCHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 346668899999999987
No 245
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=47.49 E-value=5.7 Score=32.20 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=14.5
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-++++++||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 444688999999999873
No 246
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=47.27 E-value=7.1 Score=31.85 Aligned_cols=20 Identities=40% Similarity=0.554 Sum_probs=16.3
Q ss_pred cCCC--eeeecccCCcccceee
Q psy7691 76 SGRD--MVGIAQTGSGKTLAVI 95 (165)
Q Consensus 76 ~G~d--i~~~a~tgsGKt~~~~ 95 (165)
.|.+ +++-++||||||....
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4776 7899999999997653
No 247
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=47.18 E-value=9.7 Score=29.90 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.9
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
+..++..+++|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999873
No 248
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=46.99 E-value=7.6 Score=27.50 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=13.7
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++..+++|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3589999999999874
No 249
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=46.34 E-value=6.2 Score=28.14 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.7
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.+..++.+++.|||||.
T Consensus 9 ~~~~I~l~G~~GsGKST 25 (184)
T 1y63_A 9 KGINILITGTPGTGKTS 25 (184)
T ss_dssp SSCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678999999999986
No 250
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=46.05 E-value=7.4 Score=27.52 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=15.7
Q ss_pred HHcCCCeeeecccCCcccc
Q psy7691 74 ALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~ 92 (165)
+..+.-++..++.|||||.
T Consensus 6 m~~~~~I~l~G~~GsGKsT 24 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGT 24 (196)
T ss_dssp HTTSCEEEEEECTTSSHHH
T ss_pred CcCCCEEEEECCCCCCHHH
Confidence 3456778899999999986
No 251
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=45.73 E-value=24 Score=27.44 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCCCchHHH-HHHHHHHcCC-----CeeeecccCCccccee
Q psy7691 49 NAVLQHLKGQGFEEPTAIQA-QGWPIALSGR-----DMVGIAQTGSGKTLAV 94 (165)
Q Consensus 49 ~~l~~~l~~~g~~~~t~~Q~-~a~~~~l~G~-----di~~~a~tgsGKt~~~ 94 (165)
..+.+.|+-+||. | ++. .++-.++.|. .++..+|.|+|||..+
T Consensus 73 n~i~~~l~~qg~~-~--~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD-P--QYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC-H--HHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC-H--HHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3788888888987 3 332 2344556664 4889999999999843
No 252
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=45.25 E-value=6.7 Score=28.69 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=14.3
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
+|+.|+..++.|||||.
T Consensus 3 ~~~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGT 19 (220)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45678899999999986
No 253
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=45.25 E-value=6.9 Score=26.95 Aligned_cols=14 Identities=7% Similarity=-0.209 Sum_probs=11.8
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
-++..++.|+|||.
T Consensus 3 ~i~l~G~~GsGKsT 16 (173)
T 3kb2_A 3 LIILEGPDCCFKST 16 (173)
T ss_dssp EEEEECSSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36789999999986
No 254
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=45.00 E-value=5.4 Score=32.39 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=16.0
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+..|.-++.+++||||||..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34566788999999999874
No 255
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=44.94 E-value=25 Score=29.49 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=31.1
Q ss_pred eeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHhc
Q psy7691 80 MVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144 (165)
Q Consensus 80 i~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~~ 144 (165)
.++.|+.|+|||..+.+ ..+. ...++++|+ ++++..+.+.+...
T Consensus 164 ~~I~G~aGsGKTt~I~~-------------~~~~-------~~~lVlTpT-~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILS-------------RVNF-------EEDLILVPG-RQAAEMIRRRANAS 207 (446)
T ss_dssp EEEEECTTSCHHHHHHH-------------HCCT-------TTCEEEESC-HHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCHHHHHHH-------------Hhcc-------CCeEEEeCC-HHHHHHHHHHhhhc
Confidence 46799999999985432 1121 134888999 88888888888644
No 256
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=44.71 E-value=6.2 Score=29.30 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.0
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
+.|+-++.++|+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 4677788999999999873
No 257
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=44.63 E-value=8.1 Score=27.38 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=15.6
Q ss_pred HHcCCCeeeecccCCcccc
Q psy7691 74 ALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~ 92 (165)
+.++.-|+.+++.|||||.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT 27 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGT 27 (199)
T ss_dssp HHHSCEEEEEECTTSSHHH
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3456778899999999986
No 258
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=44.02 E-value=7.4 Score=28.34 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHcCCCeeeecccCCcccc
Q psy7691 64 TAIQAQGWPIALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 64 t~~Q~~a~~~~l~G~di~~~a~tgsGKt~ 92 (165)
++.+... ..+..|.-++.+++.|+|||.
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKST 40 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHH
Confidence 3444333 345677788899999999986
No 259
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=43.70 E-value=7.4 Score=28.10 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=14.6
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.|.-+..+++.|+|||.
T Consensus 28 ~g~~i~l~G~~GsGKST 44 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTT 44 (200)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46678899999999987
No 260
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.59 E-value=8.9 Score=31.85 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=31.0
Q ss_pred CccccccCCCcHHHHHHHHhC-CC--CCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQ-GF--EEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~-g~--~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
|-..|++.+=.+...+.|++. -+ ..|-.++... +.--+-++-.+|+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHH
Confidence 567888886666666666653 11 1111111110 11125688999999999984
No 261
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=43.53 E-value=8.1 Score=30.27 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.1
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.+..++..+++|+|||..
T Consensus 43 ~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCCEEECBCTTSSHHHH
T ss_pred CCCcEEEECCCCCCHHHH
Confidence 346799999999999974
No 262
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=43.50 E-value=8.9 Score=28.06 Aligned_cols=17 Identities=18% Similarity=0.092 Sum_probs=14.4
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
+++-|+..++.|||||.
T Consensus 4 ~~~~I~l~G~~GsGKsT 20 (222)
T 1zak_A 4 DPLKVMISGAPASGKGT 20 (222)
T ss_dssp CSCCEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45678899999999986
No 263
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=43.44 E-value=8.7 Score=29.89 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=14.6
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
+..++..+++|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46799999999999974
No 264
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.26 E-value=6.4 Score=33.40 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=32.2
Q ss_pred CCccccccCCCcHHHHHHHHhCC-C--CCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 37 CPTQELTEGCFPNAVLQHLKGQG-F--EEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~~~l~~~g-~--~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.|-+.|++.+-.+++.+.|++.= + ..|-.++... +---+-++..+|+|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 45678999877777777776531 1 1111111100 01124588999999999983
No 265
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=43.14 E-value=6.8 Score=30.86 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=14.5
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
|..++..+++|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35699999999999974
No 266
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=43.03 E-value=9.3 Score=27.22 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=12.5
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
+=+..++++|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3466789999999863
No 267
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=42.65 E-value=7.6 Score=31.22 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=12.4
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
-++.+++||+|||.
T Consensus 7 ~i~i~GptGsGKTt 20 (323)
T 3crm_A 7 AIFLMGPTAAGKTD 20 (323)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999987
No 268
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=42.52 E-value=7.8 Score=28.41 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.4
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
+|+.|+..+++|||||.
T Consensus 4 ~~~~I~l~G~~GsGKsT 20 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGT 20 (217)
T ss_dssp GCCEEEEEECTTSSHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 45678899999999986
No 269
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=42.17 E-value=7.4 Score=29.76 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=29.1
Q ss_pred CccccccCCCcHHHHHHHHhCC-C--CCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQG-F--EEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g-~--~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
|-..|+++.-.+...+.|.+.- . ..+.... .....+..++..+++|+|||..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~----~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFT----GLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSC----GGGCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHh----cCCCCCCeEEEECcCCCCHHHH
Confidence 3457888755666666665421 0 0000000 0012356789999999999973
No 270
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=42.08 E-value=8.1 Score=27.02 Aligned_cols=17 Identities=24% Similarity=0.046 Sum_probs=10.0
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
+++-|+..+..|||||.
T Consensus 4 ~~~~I~l~G~~GsGKST 20 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTH 20 (183)
T ss_dssp -CCEEEEECCC----CH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45678899999999986
No 271
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=41.92 E-value=6.5 Score=27.74 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.4
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
+.-++.+++.|+|||.
T Consensus 5 ~~~I~l~G~~GsGKST 20 (193)
T 2rhm_A 5 PALIIVTGHPATGKTT 20 (193)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4457899999999986
No 272
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=41.91 E-value=12 Score=29.26 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.3
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
....++..+++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 456899999999999873
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=41.79 E-value=6.5 Score=27.81 Aligned_cols=18 Identities=33% Similarity=0.278 Sum_probs=14.3
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-+..+++.|+|||..
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 455577899999999874
No 274
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=41.70 E-value=7.4 Score=28.88 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.1
Q ss_pred HcCCCeeeecccCCcccc
Q psy7691 75 LSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~ 92 (165)
..+..|+..+++|||||.
T Consensus 14 ~~~~~I~l~G~~GsGKsT 31 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGT 31 (233)
T ss_dssp CCCCEEEEECCTTSSHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 455678999999999986
No 275
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=41.52 E-value=8.7 Score=28.34 Aligned_cols=19 Identities=32% Similarity=0.316 Sum_probs=11.4
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..|.-+..++++|+|||..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566678899999999863
No 276
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=41.42 E-value=32 Score=25.85 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=13.7
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+.+|.-|+..+++|+|||..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~ 41 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTH 41 (227)
T ss_dssp -CCCCEEEEECCC---CHHH
T ss_pred ccCCeEEEEECCCCCCHHHH
Confidence 45788899999999999874
No 277
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=40.96 E-value=8.3 Score=31.22 Aligned_cols=14 Identities=43% Similarity=0.370 Sum_probs=12.1
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
-++++++||||||.
T Consensus 9 lI~I~GptgSGKTt 22 (340)
T 3d3q_A 9 LIVIVGPTASGKTE 22 (340)
T ss_dssp EEEEECSTTSSHHH
T ss_pred eEEEECCCcCcHHH
Confidence 36789999999986
No 278
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=40.88 E-value=8.2 Score=28.39 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=14.0
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
+++-++..+++|||||.
T Consensus 6 ~~~~I~l~G~~GsGKsT 22 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGT 22 (227)
T ss_dssp -CCEEEEEECTTSSHHH
T ss_pred cCcEEEEECCCCCCHHH
Confidence 44668899999999987
No 279
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=40.76 E-value=8.6 Score=28.71 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=15.8
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
+..|.-+..++|.|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 56788888999999999874
No 280
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=40.42 E-value=10 Score=27.80 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.2
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
+-|+.++|.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999863
No 281
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=40.41 E-value=8.8 Score=26.89 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=11.4
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
|+..++.|||||.
T Consensus 4 I~i~G~~GsGKsT 16 (194)
T 1nks_A 4 GIVTGIPGVGKST 16 (194)
T ss_dssp EEEEECTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 6789999999986
No 282
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=40.27 E-value=9 Score=27.50 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=14.6
Q ss_pred HcCCCeeeecccCCcccc
Q psy7691 75 LSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~ 92 (165)
..++-|+.+++.|||||.
T Consensus 18 ~~~~~I~l~G~~GsGKST 35 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGT 35 (201)
T ss_dssp CSCCEEEEECCTTSSHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 344568899999999986
No 283
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=40.26 E-value=8.1 Score=33.07 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.2
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.+-++++.+.||||||.+
T Consensus 166 ~~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG 183 (512)
T ss_dssp GSCSEEEECCTTSSHHHH
T ss_pred cCceEEEECCCCCCHHHH
Confidence 356899999999999874
No 284
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=40.17 E-value=6.9 Score=27.35 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=13.9
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.|.-+..+++.|+|||.
T Consensus 7 ~g~~i~l~G~~GsGKST 23 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSA 23 (175)
T ss_dssp TSEEEEEECSTTSCHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 35567889999999986
No 285
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=39.95 E-value=9.1 Score=27.79 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=15.5
Q ss_pred HHHcCCCeeeecccCCcccce
Q psy7691 73 IALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 73 ~~l~G~di~~~a~tgsGKt~~ 93 (165)
.+..|.-+..+++.|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 356777788999999999874
No 286
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=39.84 E-value=11 Score=26.52 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=13.2
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
+.-|+.+++.|||||.
T Consensus 2 ~~~I~l~G~~GsGKsT 17 (184)
T 2iyv_A 2 APKAVLVGLPGSGKST 17 (184)
T ss_dssp CCSEEEECSTTSSHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 3457889999999986
No 287
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=39.78 E-value=8.9 Score=27.51 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=15.2
Q ss_pred HcCCCeeeecccCCcccc
Q psy7691 75 LSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~ 92 (165)
.+|+-|+..+..|||||.
T Consensus 8 ~~~~~I~l~G~~GsGKST 25 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKST 25 (212)
T ss_dssp BCSCEEEEEESTTSSHHH
T ss_pred hcCCEEEEEcCCCCCHHH
Confidence 356778899999999987
No 288
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=39.72 E-value=11 Score=29.04 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=14.2
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++..+++|+|||..
T Consensus 39 ~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCEEECCTTCCCHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6799999999999974
No 289
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=39.58 E-value=12 Score=28.54 Aligned_cols=20 Identities=45% Similarity=0.587 Sum_probs=17.1
Q ss_pred HHcCCCeeeecccCCcccce
Q psy7691 74 ALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~ 93 (165)
.+.|..+..+++.|+|||..
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 45699999999999999873
No 290
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=39.28 E-value=22 Score=37.11 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=31.1
Q ss_pred CcHHHHHHHHhCCCCCCchHH-HHHHHH--HHcCC-CeeeecccCCccccee
Q psy7691 47 FPNAVLQHLKGQGFEEPTAIQ-AQGWPI--ALSGR-DMVGIAQTGSGKTLAV 94 (165)
Q Consensus 47 l~~~l~~~l~~~g~~~~t~~Q-~~a~~~--~l~G~-di~~~a~tgsGKt~~~ 94 (165)
+.+.+.+.+.+.|+. +++.+ ..++.. .+.-+ -++.++++|+|||.++
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~ 923 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSW 923 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHH
Confidence 556777888889996 45532 233322 23333 3789999999999864
No 291
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=39.20 E-value=21 Score=29.26 Aligned_cols=69 Identities=22% Similarity=0.156 Sum_probs=42.0
Q ss_pred CCchHHHHHHHHHHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l 141 (165)
.+++.|...+..+...+-+++..+.+.|||.....+ .+..+.. ..|..+.++.++ .+++..+.+.+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~--------~l~~a~~-----~~g~~v~~vA~t-~~qA~~vf~~i 228 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIF--------LAHFVCF-----NKDKAVGILAHK-GSMSAEVLDRT 228 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHH--------HHHHHHS-----SSSCEEEEEESS-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHH--------HHHHHHh-----CCCCeEEEEeCC-HHHHHHHHHHH
Confidence 468899887765543455788889999999865421 1111111 234467777787 66655555544
Q ss_pred Hhc
Q psy7691 142 TEA 144 (165)
Q Consensus 142 ~~~ 144 (165)
...
T Consensus 229 ~~m 231 (385)
T 2o0j_A 229 KQA 231 (385)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 292
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=39.09 E-value=9.4 Score=28.34 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=13.8
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++..+++|+|||..
T Consensus 40 ~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLL 55 (262)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5688999999999973
No 293
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=38.84 E-value=9.6 Score=27.21 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=13.0
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
-++..+++|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999974
No 294
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=38.76 E-value=10 Score=29.44 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.5
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
...++..+++|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999974
No 295
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=38.69 E-value=9.6 Score=27.97 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=15.3
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+...+++|+|||..
T Consensus 28 ~~G~~~~l~GpnGsGKSTL 46 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH
Confidence 3566688899999999874
No 296
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=38.67 E-value=9.6 Score=28.82 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=13.7
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++..+++|+|||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4688999999999974
No 297
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=38.51 E-value=9.7 Score=28.48 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=26.6
Q ss_pred ccccccCCCcHHHHHHHHhC-C-CCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 39 TQELTEGCFPNAVLQHLKGQ-G-FEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 39 i~~f~~l~l~~~l~~~l~~~-g-~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
-..|+++.-.+.+.+.+... . +..+...+... ......++..+++|+|||..
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHH
Confidence 45788875555555555431 0 11111111100 01123588999999999973
No 298
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=38.49 E-value=8.9 Score=27.86 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=13.7
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.|.-+.+++++|||||.
T Consensus 21 ~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKST 37 (208)
T ss_dssp SCEEEEEECCTTSCTHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 35567789999999986
No 299
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=38.37 E-value=9.9 Score=27.27 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=14.9
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
+|.-|+..+..|||||.
T Consensus 8 ~~~~I~l~G~~GsGKsT 24 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKST 24 (215)
T ss_dssp CCCEEEEEESTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 56778899999999987
No 300
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=38.37 E-value=9.7 Score=31.71 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=11.7
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
+++.+|||+|||..
T Consensus 5 i~i~GptgsGKttl 18 (409)
T 3eph_A 5 IVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEECSSSSHHHH
T ss_pred EEEECcchhhHHHH
Confidence 56789999999863
No 301
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=38.23 E-value=8.2 Score=27.34 Aligned_cols=17 Identities=35% Similarity=0.280 Sum_probs=14.5
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.|.-++.++..|+|||.
T Consensus 12 ~~~~i~l~G~~GsGKsT 28 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTT 28 (186)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 56678899999999986
No 302
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=37.95 E-value=9.8 Score=29.49 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=13.1
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
+-++..+++|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3477889999999984
No 303
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=37.79 E-value=10 Score=27.35 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=14.1
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-+...+++|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 345677899999999863
No 304
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=37.69 E-value=48 Score=24.46 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=32.7
Q ss_pred HcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHHh
Q psy7691 75 LSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~~ 143 (165)
++|.-|+..+.+|+|||...- - ..+++...| .. .+++.--|....+...|.+++..
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~------~---l~~~l~~~~---~~-~v~~~rep~~t~~g~~ir~~l~~ 56 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARN------V---VVETLEQLG---IR-DMVFTREPGGTQLAEKLRSLLLD 56 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHH------H---HHHHHHHTT---CC-CEEEEESSCSSHHHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHH------H---HHHHHHHcC---CC-cceeeeCCCCCHHHHHHHHHHhc
Confidence 357778889999999997432 0 222221111 10 23444456656777788888874
No 305
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=37.63 E-value=6.8 Score=27.80 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=12.1
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
.-+..+++.|+|||.
T Consensus 3 ~ii~l~G~~GaGKST 17 (189)
T 2bdt_A 3 KLYIITGPAGVGKST 17 (189)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCcHHH
Confidence 346678999999987
No 306
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=37.47 E-value=12 Score=29.11 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.8
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
+..++..+++|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56789999999999974
No 307
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=37.21 E-value=11 Score=29.26 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=14.1
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++..+++|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 4799999999999974
No 308
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=36.78 E-value=11 Score=28.16 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=28.2
Q ss_pred CCccccccCCCcHHHHHHHHhCC--CCCCchHHHHHHHHHH--cCCCeeeecccCCcccce
Q psy7691 37 CPTQELTEGCFPNAVLQHLKGQG--FEEPTAIQAQGWPIAL--SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~~~l~~~g--~~~~t~~Q~~a~~~~l--~G~di~~~a~tgsGKt~~ 93 (165)
.|-..|+++.-.+.....+++.- |..+ ..+..+. -...++..+++|+|||..
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 34567888765565555554421 2111 1111110 012288999999999873
No 309
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=36.68 E-value=9 Score=26.94 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.2
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.|.-+..++..|||||.
T Consensus 4 ~g~~i~l~G~~GsGKST 20 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTT 20 (179)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46667889999999986
No 310
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=36.25 E-value=11 Score=26.98 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=13.2
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
.-++.+++.|+|||.
T Consensus 19 ~~I~l~G~~GsGKST 33 (202)
T 3t61_A 19 GSIVVMGVSGSGKSS 33 (202)
T ss_dssp SCEEEECSTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 468899999999987
No 311
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=36.07 E-value=13 Score=29.80 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=15.4
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.+.++++++++|+|||..
T Consensus 34 ~~~~~~i~G~~G~GKs~~ 51 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFT 51 (392)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred ccCceEEEcCCCCCHHHH
Confidence 456899999999999874
No 312
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=36.04 E-value=11 Score=26.59 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=11.3
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
++..+..|+|||.
T Consensus 3 I~i~G~~GsGKsT 15 (205)
T 2jaq_A 3 IAIFGTVGAGKST 15 (205)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCccCHHH
Confidence 6778999999986
No 313
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=35.95 E-value=30 Score=25.74 Aligned_cols=18 Identities=28% Similarity=0.161 Sum_probs=15.3
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
+|.-++..++.|+|||..
T Consensus 25 ~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 577788999999999873
No 314
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=35.91 E-value=12 Score=28.94 Aligned_cols=16 Identities=38% Similarity=0.308 Sum_probs=13.4
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
+.-++.+++.|+|||.
T Consensus 33 ~~livl~G~sGsGKST 48 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTS 48 (287)
T ss_dssp CEEEEEECCTTSCTHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4458899999999976
No 315
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=35.62 E-value=15 Score=25.34 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=12.7
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
+-|+..++.|||||.
T Consensus 3 ~~I~l~G~~GsGKsT 17 (173)
T 1e6c_A 3 EPIFMVGARGCGMTT 17 (173)
T ss_dssp CCEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 357889999999986
No 316
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=35.38 E-value=9.6 Score=28.93 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=13.2
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
+.-|+.++..|||||.
T Consensus 4 ~~lIvl~G~pGSGKST 19 (260)
T 3a4m_A 4 IMLIILTGLPGVGKST 19 (260)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CEEEEEEcCCCCCHHH
Confidence 3457889999999986
No 317
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=35.23 E-value=12 Score=26.17 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=12.2
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
-|+..++.|||||.
T Consensus 8 ~I~l~G~~GsGKsT 21 (194)
T 1qf9_A 8 VVFVLGGPGSGKGT 21 (194)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47789999999986
No 318
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=35.14 E-value=12 Score=27.40 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=14.8
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-++..+++|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIF 39 (247)
T ss_dssp TTCEEEEEECTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456678899999999974
No 319
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=35.13 E-value=10 Score=28.53 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.0
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.|+-++..++||+|||.
T Consensus 33 ~g~~ilI~GpsGsGKSt 49 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSE 49 (205)
T ss_dssp TTEEEEEECCCTTTTHH
T ss_pred CCEEEEEECCCCCCHHH
Confidence 45568899999999974
No 320
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=34.77 E-value=11 Score=27.20 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.9
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
.|+..++.|||||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3fb4_A 2 NIVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36789999999986
No 321
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=34.69 E-value=15 Score=29.30 Aligned_cols=17 Identities=47% Similarity=0.628 Sum_probs=14.6
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
...++..+++|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 45799999999999973
No 322
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=34.55 E-value=10 Score=27.33 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=14.9
Q ss_pred HcCCCeeeecccCCcccc
Q psy7691 75 LSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~ 92 (165)
..|.-+..+++.|+|||.
T Consensus 23 ~~g~~i~l~G~sGsGKST 40 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKST 40 (200)
T ss_dssp SCCEEEEEECSTTSSHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 356678899999999986
No 323
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=34.27 E-value=9.6 Score=28.61 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.6
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++..+++|+|||..
T Consensus 45 ~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLL 60 (268)
T ss_dssp SCCCCBCSSCSSHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 4588899999999874
No 324
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=34.21 E-value=12 Score=29.28 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=30.0
Q ss_pred CccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHH-----HcCCCeeeecccCCcccce
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIA-----LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~-----l~G~di~~~a~tgsGKt~~ 93 (165)
|-..|+++.-.+.+.+.|...-. .+.. .|.. .....++..+++|+|||..
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 44678888767777777665311 0100 0111 1124589999999999974
No 325
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=34.02 E-value=12 Score=26.77 Aligned_cols=17 Identities=29% Similarity=0.108 Sum_probs=13.7
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
|.-+...+++|+|||..
T Consensus 20 G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTL 36 (220)
T ss_dssp TSEEEEECSTTSSHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 44577899999999964
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=33.89 E-value=12 Score=27.12 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=11.9
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
.|+..++.|||||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3dl0_A 2 NLVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36789999999986
No 327
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=33.81 E-value=12 Score=29.36 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=29.4
Q ss_pred CccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHc-----CCCeeeecccCCcccce
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALS-----GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~-----G~di~~~a~tgsGKt~~ 93 (165)
|-..|+++.-.+.+.+.|.+.=. .|.. .|.+.. .+.++..+++|+|||..
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 45689988666666666654210 0000 011111 25688999999999873
No 328
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=33.69 E-value=76 Score=23.49 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=33.9
Q ss_pred cCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCC-cHHHHHHHHHHHHhcCCCCCh
Q psy7691 76 SGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN-NGKQAKELIAVLTEASQPIPP 150 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~-~~~~~~~i~~~l~~~~~~~p~ 150 (165)
+|.-|+..++.|+|||...- ...++.+. .+.++-.|. .......|.+++......+.+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~---------~l~~~l~~--------~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~ 62 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCN---------ILYKKLQP--------NCKLLKFPERSTRIGGLINEYLTDDSFQLSD 62 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHH---------HHHHHHCS--------SEEEEESSCTTSHHHHHHHHHHHCTTSCCCH
T ss_pred CCeEEEEECCCCCCHHHHHH---------HHHHHhcc--------cceEEEecCCCChHHHHHHHHHHhcccCCCH
Confidence 57788899999999987422 02223321 134444563 345666777777655434433
No 329
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=33.58 E-value=12 Score=26.84 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=11.7
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
+..+++.|+|||..
T Consensus 3 i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 3 IIITGEPGVGKTTL 16 (178)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999874
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=33.39 E-value=13 Score=26.49 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=12.2
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
-|+..++.|||||.
T Consensus 17 ~I~l~G~~GsGKsT 30 (203)
T 1ukz_A 17 VIFVLGGPGAGKGT 30 (203)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47789999999986
No 331
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=33.36 E-value=13 Score=28.39 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=13.2
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++..+++|+|||..
T Consensus 49 ~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 49 SFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEESCSSSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 588999999999973
No 332
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=33.12 E-value=14 Score=25.66 Aligned_cols=14 Identities=43% Similarity=0.468 Sum_probs=11.4
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
.+.++++|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 35789999999873
No 333
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.04 E-value=8.4 Score=32.37 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=31.1
Q ss_pred CCccccccCCCcHHHHHHHHhC-C--CCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 37 CPTQELTEGCFPNAVLQHLKGQ-G--FEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~~~l~~~-g--~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.|-.+|++.+=.++..+.|.+. - +..|--++... +---+-++-.+|+|+|||+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHH
Confidence 4667899986566666666542 1 11221111110 01124588999999999983
No 334
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=33.02 E-value=13 Score=27.09 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.0
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
|.-++..|++|+|||..
T Consensus 30 G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CeEEEEEeCCCCCHHHH
Confidence 45578999999999974
No 335
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=32.90 E-value=14 Score=25.91 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=11.7
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
.+.++++|+|||..
T Consensus 29 ~~i~G~NGsGKStl 42 (182)
T 3kta_A 29 TAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45799999999873
No 336
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=32.84 E-value=12 Score=30.86 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.4
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
+..++..+++|+|||..
T Consensus 63 ~~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTAL 79 (456)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 35799999999999973
No 337
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=32.84 E-value=10 Score=30.53 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=12.0
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
++.++++|+|||..
T Consensus 26 ~~i~G~NGaGKTTl 39 (365)
T 3qf7_A 26 TVVEGPNGAGKSSL 39 (365)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56899999999974
No 338
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=32.72 E-value=13 Score=25.59 Aligned_cols=14 Identities=29% Similarity=0.197 Sum_probs=11.8
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
.|+..+..|||||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (168)
T 2pt5_A 2 RIYLIGFMCSGKST 15 (168)
T ss_dssp EEEEESCTTSCHHH
T ss_pred eEEEECCCCCCHHH
Confidence 36788999999986
No 339
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=32.72 E-value=16 Score=29.22 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=28.0
Q ss_pred CCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHH-----HcCCCeeeecccCCcccce
Q psy7691 37 CPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIA-----LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~-----l~G~di~~~a~tgsGKt~~ 93 (165)
.|-..|+++.-.+.+.+.|...=. .+. ..|.+ .....++..+++|+|||..
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~---~~~---~~~~~~~~~~~~~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 100 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTH---HHH---HCGGGGCSSCCCCCCEEEECSTTSCHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCceEEEECCCCCcHHHH
Confidence 345678887655556666654210 000 00111 1234689999999999974
No 340
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=32.65 E-value=14 Score=27.83 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.4
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..|.-+..+++.|+|||..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3566678999999999874
No 341
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=32.61 E-value=14 Score=27.29 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=13.2
Q ss_pred CeeeecccCCccccee
Q psy7691 79 DMVGIAQTGSGKTLAV 94 (165)
Q Consensus 79 di~~~a~tgsGKt~~~ 94 (165)
-.+.+++.|||||...
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4578999999999853
No 342
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=32.46 E-value=14 Score=27.51 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=14.5
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.+.-+..+++.|+|||..
T Consensus 26 ~~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345688999999999873
No 343
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=32.46 E-value=17 Score=26.39 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=12.3
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
|.-+..+++.|+|||.
T Consensus 1 G~~i~i~G~nG~GKTT 16 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTT 16 (189)
T ss_dssp CCCEEEESCCSSCHHH
T ss_pred CCEEEEECCCCChHHH
Confidence 3446678999999976
No 344
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=32.30 E-value=14 Score=25.82 Aligned_cols=13 Identities=38% Similarity=0.337 Sum_probs=11.2
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
+...+..|||||.
T Consensus 3 I~l~G~~GsGKsT 15 (195)
T 2pbr_A 3 IAFEGIDGSGKTT 15 (195)
T ss_dssp EEEECSTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 5678999999986
No 345
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=31.99 E-value=14 Score=29.06 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=13.4
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++..+++|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 688999999999974
No 346
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=31.96 E-value=12 Score=26.98 Aligned_cols=16 Identities=31% Similarity=0.042 Sum_probs=12.6
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
|.-+..+++.|||||.
T Consensus 6 ~~~i~i~G~~GsGKST 21 (211)
T 3asz_A 6 PFVIGIAGGTASGKTT 21 (211)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred cEEEEEECCCCCCHHH
Confidence 4446688999999976
No 347
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=31.95 E-value=15 Score=25.92 Aligned_cols=13 Identities=31% Similarity=0.309 Sum_probs=11.1
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
|...++.|||||.
T Consensus 3 I~l~G~~GsGKsT 15 (197)
T 2z0h_A 3 ITFEGIDGSGKST 15 (197)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5678999999986
No 348
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=31.68 E-value=13 Score=26.92 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=11.9
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
.++..++.|||||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (214)
T 1e4v_A 2 RIILLGAPVAGKGT 15 (214)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36789999999986
No 349
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=31.67 E-value=17 Score=25.33 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=12.4
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
.++.+++.|||||.
T Consensus 6 ~i~i~G~~GsGKsT 19 (175)
T 1via_A 6 NIVFIGFMGSGKST 19 (175)
T ss_dssp CEEEECCTTSCHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 58889999999986
No 350
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=31.55 E-value=14 Score=28.38 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=25.1
Q ss_pred CccccccCCCcHHHHHHHHhCCCCCCchHH-HHHHHHH----HcCCCeeeecccCCcccce
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQGFEEPTAIQ-AQGWPIA----LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q-~~a~~~~----l~G~di~~~a~tgsGKt~~ 93 (165)
|-..|++.+-.+++.+.|.+.=. .+.. ...+..+ -.| ++..++.|+|||..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHH
Confidence 45688888777777777765211 1110 0111111 133 88999999999974
No 351
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=31.27 E-value=32 Score=26.95 Aligned_cols=25 Identities=24% Similarity=0.081 Sum_probs=18.0
Q ss_pred HHHHHHc-----CCCeeeecccCCccccee
Q psy7691 70 GWPIALS-----GRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 70 a~~~~l~-----G~di~~~a~tgsGKt~~~ 94 (165)
.++.++. |.-+...+++|+|||...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 4555653 355778999999999743
No 352
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=31.06 E-value=15 Score=27.87 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=28.6
Q ss_pred CccccccCCCcHHHHHHHHhCC--CCCCchHHHHHHHHHH--cCCCeeeecccCCcccce
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQG--FEEPTAIQAQGWPIAL--SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~g--~~~~t~~Q~~a~~~~l--~G~di~~~a~tgsGKt~~ 93 (165)
|-..|+++.-.+...+.+.+.- |..+ ..+..+. -...++..+++|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 4567888866666666655421 1111 1111110 012288999999999874
No 353
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=30.72 E-value=16 Score=26.14 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=11.3
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
+..+++.|||||.
T Consensus 4 i~i~G~~GsGKST 16 (204)
T 2if2_A 4 IGLTGNIGCGKST 16 (204)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCcCHHH
Confidence 6678999999987
No 354
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=30.72 E-value=16 Score=26.52 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=12.4
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
.-+..+++.|||||.
T Consensus 6 ~~i~i~G~~GsGKST 20 (227)
T 1cke_A 6 PVITIDGPSGAGKGT 20 (227)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 447789999999976
No 355
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=30.35 E-value=16 Score=26.69 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=14.9
Q ss_pred cCCCeeeecccCCccccee
Q psy7691 76 SGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~ 94 (165)
.|.-+...+++|+|||...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3456788999999998743
No 356
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=29.98 E-value=16 Score=28.70 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.3
Q ss_pred CCeeeecccCCccccee
Q psy7691 78 RDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~~ 94 (165)
..++..+++|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45889999999999743
No 357
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.50 E-value=27 Score=26.98 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.6
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
.+++..+++|+|||..
T Consensus 59 ~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTST 74 (353)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999863
No 358
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=29.43 E-value=42 Score=25.31 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=31.5
Q ss_pred HHcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHHHHH
Q psy7691 74 ALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLT 142 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~~l~ 142 (165)
.++|.-|+..+++|+|||...- ....+.... |. ..+.+.-.|........|.+++.
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~---------~l~~~l~~~---~~-~~~~~~rep~~t~~g~~ir~~l~ 79 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQ---------VVVETLQQN---GI-DHITRTREPGGTLLAEKLRALVK 79 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHH---------HHHHHHHHT---TC-CCEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH---------HHHHHHHhc---CC-CeeeeecCCCCCHHHHHHHHHHh
Confidence 3578889999999999997322 022222211 11 11334445655566777777775
No 359
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=29.37 E-value=17 Score=27.36 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.3
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4566677899999999874
No 360
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=29.35 E-value=13 Score=26.75 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=14.7
Q ss_pred cCCCeeeecccCCccccee
Q psy7691 76 SGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~ 94 (165)
.|.-+..++++|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3455778999999998753
No 361
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=29.30 E-value=21 Score=26.53 Aligned_cols=19 Identities=26% Similarity=0.155 Sum_probs=15.7
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..|.-+..+++.|+|||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4677788899999999874
No 362
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.09 E-value=16 Score=30.50 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=28.7
Q ss_pred CCccccccCCCcHHHHHHHHhC-CC--CCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 37 CPTQELTEGCFPNAVLQHLKGQ-GF--EEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~~~l~~~-g~--~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.|-+.|++.+-.++..+.|.+. -+ ..|-.++... +.--+-++..+|+|+|||+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHH
Confidence 3556788776555555555542 11 1111111100 01114588999999999983
No 363
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.85 E-value=16 Score=30.39 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=13.5
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
+-++..+|+|+|||..
T Consensus 207 rGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTML 222 (428)
T ss_dssp CEEEEESCTTTTHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3488999999999983
No 364
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=28.84 E-value=17 Score=28.99 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=14.4
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
...++..+++|+|||..
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 45689999999999974
No 365
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=28.83 E-value=14 Score=26.52 Aligned_cols=18 Identities=28% Similarity=-0.036 Sum_probs=14.0
Q ss_pred HcCCCeeeecccCCcccc
Q psy7691 75 LSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~ 92 (165)
..|.-+..++++|+|||.
T Consensus 19 ~~~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTT 36 (207)
T ss_dssp CCCEEEEEEESTTSSHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 345557789999999986
No 366
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=28.68 E-value=13 Score=27.93 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=13.4
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
+.-++.+++.|||||.
T Consensus 32 ~~~i~l~G~~GsGKST 47 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTT 47 (253)
T ss_dssp CEEEEEESCGGGTTHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4458899999999986
No 367
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=28.56 E-value=16 Score=29.33 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=14.7
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
+..++..+++|+|||..
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999973
No 368
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=28.19 E-value=18 Score=29.03 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=11.4
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
.+.+++||+|||..
T Consensus 28 ~vi~G~NGaGKT~i 41 (371)
T 3auy_A 28 VAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 35699999999973
No 369
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=28.18 E-value=17 Score=25.07 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=12.6
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
..++..+..|||||.
T Consensus 8 ~~i~l~G~~GsGKST 22 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSS 22 (168)
T ss_dssp CEEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 357889999999986
No 370
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=28.16 E-value=18 Score=26.52 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=11.4
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
++..++.|||||.
T Consensus 3 I~l~G~~GsGKsT 15 (223)
T 2xb4_A 3 ILIFGPNGSGKGT 15 (223)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 6788999999986
No 371
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=28.05 E-value=18 Score=26.95 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.6
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..|.-+..+++.|+|||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4666778999999999874
No 372
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=27.70 E-value=21 Score=30.88 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=13.8
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
+++..+++|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 373
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=27.64 E-value=19 Score=26.82 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=15.1
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566677899999999874
No 374
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=27.55 E-value=20 Score=28.21 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.7
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++..+++|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5688999999999873
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=27.52 E-value=11 Score=27.07 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=11.0
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
|+..++.|||||.
T Consensus 3 I~i~G~~GsGKsT 15 (214)
T 1gtv_A 3 IAIEGVDGAGKRT 15 (214)
T ss_dssp EEEEEEEEEEHHH
T ss_pred EEEEcCCCCCHHH
Confidence 5678999999987
No 376
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=27.48 E-value=18 Score=31.46 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.6
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
+-++++.+.||||||.+
T Consensus 214 ~pHlLIaG~TGSGKS~~ 230 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG 230 (574)
T ss_dssp SCCEEEECCTTSSHHHH
T ss_pred CCeeEEECCCCCCHHHH
Confidence 35799999999999875
No 377
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=27.34 E-value=19 Score=27.37 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.5
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 4666677899999999874
No 378
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=27.26 E-value=19 Score=26.97 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.4
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.++-|+..++.|||||.
T Consensus 28 ~~~~I~l~G~~GsGKsT 44 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGT 44 (243)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45678999999999986
No 379
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=27.11 E-value=19 Score=27.51 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.1
Q ss_pred cCCCeeeecccCCccccee
Q psy7691 76 SGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~~ 94 (165)
.|.-+...+++|+|||...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHH
Confidence 4556778999999999753
No 380
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=27.10 E-value=19 Score=27.45 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=15.8
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4677788999999999874
No 381
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=27.05 E-value=16 Score=26.98 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=14.4
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-+...++.|+|||..
T Consensus 19 ~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCEEEEEECSTTSCHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 455577899999999873
No 382
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=27.04 E-value=19 Score=28.34 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=14.2
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-+..++++|+|||..
T Consensus 101 ~g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSSEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCcHHHH
Confidence 355677899999999874
No 383
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=27.01 E-value=20 Score=25.33 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=11.8
Q ss_pred CeeeecccCCcccc
Q psy7691 79 DMVGIAQTGSGKTL 92 (165)
Q Consensus 79 di~~~a~tgsGKt~ 92 (165)
-|..+++.|||||.
T Consensus 10 ~I~i~G~~GsGKST 23 (203)
T 1uf9_A 10 IIGITGNIGSGKST 23 (203)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36788999999986
No 384
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=26.89 E-value=20 Score=25.62 Aligned_cols=13 Identities=38% Similarity=0.309 Sum_probs=11.1
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
+...++.|||||.
T Consensus 5 i~l~G~~GsGKST 17 (206)
T 1jjv_A 5 VGLTGGIGSGKTT 17 (206)
T ss_dssp EEEECSTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 5678999999986
No 385
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=26.82 E-value=37 Score=26.87 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=17.4
Q ss_pred HHHHHHcC-----CCeeeecccCCccccee
Q psy7691 70 GWPIALSG-----RDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 70 a~~~~l~G-----~di~~~a~tgsGKt~~~ 94 (165)
.++.++.| .-+...+++|+|||...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 35555542 34678999999999743
No 386
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=26.81 E-value=19 Score=28.15 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=14.2
Q ss_pred CCCeeeecccCCccccee
Q psy7691 77 GRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~ 94 (165)
|.-+..++++|+|||...
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445778999999998743
No 387
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=26.67 E-value=51 Score=26.40 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=14.7
Q ss_pred CCCeeeecccCCcccceee
Q psy7691 77 GRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~~ 95 (165)
|.=++..|++|+|||....
T Consensus 46 G~LiiIaG~pG~GKTt~al 64 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMM 64 (338)
T ss_dssp TCEEEEEECTTSCHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHH
Confidence 3347789999999998554
No 388
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=26.45 E-value=19 Score=26.58 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHHHHhcCCC
Q psy7691 127 TPNNGKQAKELIAVLTEASQP 147 (165)
Q Consensus 127 ~p~~~~~~~~i~~~l~~~~~~ 147 (165)
.|.+..++..+...+...+.+
T Consensus 83 fPRt~~Qa~~l~~~l~~~~~~ 103 (206)
T 3sr0_A 83 FPRTVKQAEALDEMLEKKGLK 103 (206)
T ss_dssp CCCSHHHHHHHHHHHHHTTCC
T ss_pred CchhHHHHHHHHhhHHHhccc
Confidence 377788888887777765443
No 389
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=26.26 E-value=17 Score=33.93 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=10.9
Q ss_pred eeecccCCcccce
Q psy7691 81 VGIAQTGSGKTLA 93 (165)
Q Consensus 81 ~~~a~tgsGKt~~ 93 (165)
++.|..|||||..
T Consensus 5 lV~agAGSGKT~~ 17 (1166)
T 3u4q_B 5 FLVGRSGSGKTKL 17 (1166)
T ss_dssp EEEECTTSSHHHH
T ss_pred EEEeCCCCChHHH
Confidence 4688999999974
No 390
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=26.23 E-value=20 Score=27.24 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=17.4
Q ss_pred HHcCCCeeeecccCCcccceee
Q psy7691 74 ALSGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~~~ 95 (165)
+..|.-+...+++|+|||....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHH
Confidence 4566778899999999998543
No 391
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=26.17 E-value=21 Score=26.86 Aligned_cols=19 Identities=32% Similarity=0.407 Sum_probs=15.4
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566677899999999874
No 392
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=26.10 E-value=21 Score=28.29 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=15.6
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..++++|+|||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TTCSEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4667788999999999863
No 393
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=25.94 E-value=22 Score=23.69 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.0
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++.++.+|+|||..
T Consensus 3 ki~v~G~~~~GKSsl 17 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSL 17 (161)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999863
No 394
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=25.92 E-value=21 Score=27.02 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=15.5
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4566677899999999874
No 395
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=25.73 E-value=21 Score=27.68 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.3
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4566677899999999874
No 396
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=25.73 E-value=21 Score=26.84 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=14.1
Q ss_pred cCCCeeeecccCCcccc
Q psy7691 76 SGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~ 92 (165)
.|.-+...++.|||||.
T Consensus 26 ~g~~I~I~G~~GsGKST 42 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGT 42 (252)
T ss_dssp TSCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45668899999999976
No 397
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.57 E-value=22 Score=29.55 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=14.1
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
.+++..+++|+|||..
T Consensus 202 ~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAI 217 (468)
T ss_dssp CEEEEESCTTTTTHHH
T ss_pred CCeEEECCCCCCHHHH
Confidence 5789999999999974
No 398
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=25.50 E-value=67 Score=26.80 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.6
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
...++..+++|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 36799999999999873
No 399
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=25.43 E-value=19 Score=25.83 Aligned_cols=18 Identities=33% Similarity=0.255 Sum_probs=14.0
Q ss_pred CCCeeeecccCCccccee
Q psy7691 77 GRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~~ 94 (165)
|.=++..++.|+|||...
T Consensus 3 g~i~vi~G~~gsGKTT~l 20 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTEL 20 (184)
T ss_dssp CCEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 555667899999999853
No 400
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=25.36 E-value=22 Score=27.33 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=15.3
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..|.-+..+++.|+|||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4566677899999999874
No 401
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=25.28 E-value=22 Score=25.54 Aligned_cols=17 Identities=24% Similarity=-0.066 Sum_probs=13.3
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
|.-+..+++.|||||..
T Consensus 22 ~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SEEEEEEECTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34477899999999873
No 402
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=25.25 E-value=27 Score=25.13 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=13.3
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
+.-+..+++.|||||.
T Consensus 3 ~~~i~i~G~~gsGkst 18 (219)
T 2h92_A 3 AINIALDGPAAAGKST 18 (219)
T ss_dssp CCCEEEECCTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4567889999999987
No 403
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=25.25 E-value=22 Score=27.17 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=15.1
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 30 ~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566677899999999874
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=25.09 E-value=23 Score=25.63 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=12.4
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
.-+...++.|||||.
T Consensus 5 ~~I~i~G~~GSGKST 19 (218)
T 1vht_A 5 YIVALTGGIGSGKST 19 (218)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 346789999999986
No 405
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.09 E-value=27 Score=27.11 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=26.0
Q ss_pred ccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 41 ~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.|+++--.+.+.+.|...-+.. -++.+++..++.|+|||..
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl 52 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTR 52 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHH
Confidence 4666555667777766532111 1223488999999999874
No 406
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=24.96 E-value=31 Score=29.65 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.0
Q ss_pred HHHcCCCeeeecccCCcccce
Q psy7691 73 IALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 73 ~~l~G~di~~~a~tgsGKt~~ 93 (165)
.+..|..++..+++|+|||..
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHH
Confidence 456788999999999999874
No 407
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=24.84 E-value=19 Score=28.32 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=13.4
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
|.-+..++++|+|||..
T Consensus 100 g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 33466899999999874
No 408
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=24.84 E-value=18 Score=27.16 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=15.2
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566677899999999874
No 409
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=24.65 E-value=36 Score=21.66 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccceee
Q psy7691 46 CFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 46 ~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~~~ 95 (165)
+-|..+++.|..+||+. .+.||-|-|+.+.
T Consensus 50 dpPr~VLnKLE~~G~rV--------------------vsmtGvgqtlVWc 79 (83)
T 1jg5_A 50 DPPRIVLDKLECRGFRV--------------------LSMTGVGQTLVWC 79 (83)
T ss_dssp SCHHHHHHHHHHTTCEE--------------------EEEEEETTEEEEE
T ss_pred CChHHHHHHHhccCeEE--------------------EEEecCCceEEEE
Confidence 56778888899999973 5778888887655
No 410
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=24.64 E-value=24 Score=23.41 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.3
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++.++.+|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (166)
T 2ce2_X 5 KLVVVGAGGVGKSAL 19 (166)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999864
No 411
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=24.61 E-value=23 Score=26.92 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.3
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..|.-+..+++.|+|||..
T Consensus 24 ~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4566677899999999874
No 412
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=24.60 E-value=23 Score=26.89 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=15.2
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp ETTCEEEEECCSSSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566677899999999874
No 413
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=24.59 E-value=23 Score=26.97 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=11.5
Q ss_pred eeeecccCCcccc
Q psy7691 80 MVGIAQTGSGKTL 92 (165)
Q Consensus 80 i~~~a~tgsGKt~ 92 (165)
++.+++.|||||.
T Consensus 5 I~l~G~~GsGKST 17 (301)
T 1ltq_A 5 ILTIGCPGSGKST 17 (301)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6789999999986
No 414
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=24.51 E-value=1.5e+02 Score=23.79 Aligned_cols=125 Identities=15% Similarity=0.248 Sum_probs=77.1
Q ss_pred CCHHHHHHHHhhcCcEEec-CCCC-CCccccccCCCcHHHHHHHHhCCCCC-----C--chHHHHHHHHHHcCCCeeeec
Q psy7691 14 LSESEVEAFRQKKEITVKG-NNIP-CPTQELTEGCFPNAVLQHLKGQGFEE-----P--TAIQAQGWPIALSGRDMVGIA 84 (165)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~-~~~p-~~i~~f~~l~l~~~l~~~l~~~g~~~-----~--t~~Q~~a~~~~l~G~di~~~a 84 (165)
+....++.++++--+.+.. .++| .....|...+.++++.+.+++.|..- | +.+|..+-.....|..++.++
T Consensus 53 HN~~Vv~~L~~~Gv~~ve~l~ev~~g~~VIirAHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG 132 (328)
T 3szu_A 53 HNRYVVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIG 132 (328)
T ss_dssp SCHHHHHHHHHTTEEEESSGGGSCTTCEEEECTTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHTCEEEEES
T ss_pred cCHHHHHHHHHCCCEEecchhhCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCCcchHHHHHHHHHHHhCCCEEEEEc
Confidence 5566788886554333332 3454 34789999999999999999999843 2 457888877888999998888
Q ss_pred ccC-------Cccc-----ceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCc--HHHHHHHHHHHHhcCCCC
Q psy7691 85 QTG-------SGKT-----LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN--GKQAKELIAVLTEASQPI 148 (165)
Q Consensus 85 ~tg-------sGKt-----~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~--~~~~~~i~~~l~~~~~~~ 148 (165)
..| .|-+ -+++ + .+.+ -+.++.- .....+.+++.|+ .+...+|.+.|+.....+
T Consensus 133 ~~~HpEV~G~~G~~~~~~g~~~v---V-~~~e-dv~~l~~-----~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~i 200 (328)
T 3szu_A 133 HAGHPQVEGTMGQYSNPEGGMYL---V-ESPD-DVWKLTV-----KNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKI 200 (328)
T ss_dssp CTTCHHHHHHHTTCCCTTSCEEE---E-CSHH-HHHHCCC-----SCTTSEEEEECTTSCHHHHHHHHHHHHHHCTTC
T ss_pred cCCCceEEeecccccCCCCcEEE---E-CCHH-HHHhCCc-----CCCCeEEEEEecCCcHHHHHHHHHHHHHhCccc
Confidence 665 1111 1111 1 1222 2233311 1223466777665 566777777777654443
No 415
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=24.51 E-value=27 Score=28.80 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=14.4
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
+..++..+++|+|||..
T Consensus 130 ~~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL 146 (440)
T ss_dssp SCCEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35789999999999974
No 416
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=24.39 E-value=24 Score=24.53 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=13.7
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++.++.+|+|||..
T Consensus 49 ~~i~vvG~~g~GKSsl 64 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSL 64 (193)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4688999999999864
No 417
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=24.39 E-value=23 Score=27.05 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.3
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..|.-+..+++.|+|||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3566677899999999874
No 418
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=24.19 E-value=42 Score=31.41 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=34.5
Q ss_pred HcCCCeeeecccCCcccceeeecCCCCChhHHHHhhccCC-----CCCCCCceEEEECCCc---HHHHHHHHHHHHh
Q psy7691 75 LSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTG-----RCASSGTAYTFFTPNN---GKQAKELIAVLTE 143 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~-----r~~~~g~~~~~~~p~~---~~~~~~i~~~l~~ 143 (165)
+.|.. ++.|..|||||.... .-|+.-+-..| ..+-.-..++.+|=|+ .++-.+|.+.+..
T Consensus 15 l~g~~-lV~AsAGSGKT~~L~--------~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~~ 82 (1180)
T 1w36_B 15 LQGER-LIEASAGTGKTFTIA--------ALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHE 82 (1180)
T ss_dssp CSSCE-EEECCTTSCHHHHHH--------HHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCCCE-EEEECCCCCHHHHHH--------HHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHHH
Confidence 45655 789999999997433 22555553222 1111223577777775 4555566665544
No 419
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=24.06 E-value=19 Score=25.49 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.2
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..|.-+..++++|+|||..
T Consensus 24 ~~~~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSA 42 (210)
T ss_dssp SCSEEEEEEECTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3455688999999999874
No 420
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=24.03 E-value=23 Score=30.17 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.3
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|..++..+++|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466789999999999873
No 421
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=24.00 E-value=25 Score=25.31 Aligned_cols=14 Identities=29% Similarity=0.164 Sum_probs=11.1
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
+..+++.|||||..
T Consensus 7 i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45678899999873
No 422
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=23.98 E-value=23 Score=29.21 Aligned_cols=53 Identities=15% Similarity=0.163 Sum_probs=28.5
Q ss_pred CCccccccCCCcHHHHHHHHhCC-C--CCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 37 CPTQELTEGCFPNAVLQHLKGQG-F--EEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 37 ~~i~~f~~l~l~~~l~~~l~~~g-~--~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.|-..|+++.-.+.+.+.|...- + ..|..++. .......++..+++|+|||..
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~----~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG----KRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG----GGCCCSEEEEECSTTSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc----cCCCCceEEEECCCCCCHHHH
Confidence 34567777755556666655421 0 00000000 011235688999999999873
No 423
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=23.95 E-value=25 Score=23.52 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=12.3
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++.++.+|+|||..
T Consensus 7 ~i~v~G~~~~GKssl 21 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSM 21 (168)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 477889999999863
No 424
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=23.93 E-value=24 Score=26.93 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=15.4
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 39 ~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 4666677899999999874
No 425
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=23.84 E-value=24 Score=26.64 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.3
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..|.-+..+++.|+|||..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566677899999999874
No 426
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=23.77 E-value=24 Score=27.05 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=15.4
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 48 ~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEEcCCCCcHHHH
Confidence 4566677899999999874
No 427
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=23.65 E-value=25 Score=27.26 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=15.5
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 45 ~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4666677899999999874
No 428
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=23.64 E-value=25 Score=26.97 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.5
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4666677899999999874
No 429
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=23.64 E-value=32 Score=30.44 Aligned_cols=70 Identities=23% Similarity=0.175 Sum_probs=42.8
Q ss_pred CCchHHHHHHHHHHcCC--CeeeecccCCcccceeeecCCCCChhHHHHhhccCCCCCCCCceEEEECCCcHHHHHHHHH
Q psy7691 62 EPTAIQAQGWPIALSGR--DMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIA 139 (165)
Q Consensus 62 ~~t~~Q~~a~~~~l~G~--di~~~a~tgsGKt~~~~~~~lP~~~~~~i~r~gr~~r~~~~g~~~~~~~p~~~~~~~~i~~ 139 (165)
++|..|.+++..++.-. -.+..|..|.|||.+.- + .+.... +. +.+..|+ ...+..+.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG---~------~~a~~~--------~~-~~vtAP~-~~a~~~l~~ 235 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAG---Q------LISRIA--------GR-AIVTAPA-KASTDVLAQ 235 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHH---H------HHHHSS--------SC-EEEECSS-CCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHH---H------HHHHHH--------hC-cEEECCC-HHHHHHHHH
Confidence 67999999998776532 25789999999997643 2 232221 11 2555666 444456666
Q ss_pred HHHhcCCCCCh
Q psy7691 140 VLTEASQPIPP 150 (165)
Q Consensus 140 ~l~~~~~~~p~ 150 (165)
+.....+-+.|
T Consensus 236 ~~~~~i~~~~P 246 (671)
T 2zpa_A 236 FAGEKFRFIAP 246 (671)
T ss_dssp HHGGGCCBCCH
T ss_pred HhhCCeEEeCc
Confidence 66655444443
No 430
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=23.62 E-value=25 Score=27.79 Aligned_cols=13 Identities=46% Similarity=0.560 Sum_probs=11.1
Q ss_pred eeecccCCcccce
Q psy7691 81 VGIAQTGSGKTLA 93 (165)
Q Consensus 81 ~~~a~tgsGKt~~ 93 (165)
+.++++|+|||..
T Consensus 27 ~i~G~NGsGKS~l 39 (339)
T 3qkt_A 27 LIIGQNGSGKSSL 39 (339)
T ss_dssp EEECCTTSSHHHH
T ss_pred EEECCCCCCHHHH
Confidence 4699999999974
No 431
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=23.53 E-value=25 Score=26.28 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=12.1
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
+=|+..+++||||+.
T Consensus 30 kiI~llGpPGsGKgT 44 (217)
T 3umf_A 30 KVIFVLGGPGSGKGT 44 (217)
T ss_dssp EEEEEECCTTCCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 346789999999965
No 432
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=23.47 E-value=24 Score=36.26 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=17.7
Q ss_pred HHcCCCeeeecccCCccccee
Q psy7691 74 ALSGRDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~~~ 94 (165)
+..|..++.++|+|+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 456789999999999999743
No 433
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=23.47 E-value=25 Score=27.04 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=15.5
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4666677899999999874
No 434
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=23.36 E-value=14 Score=28.93 Aligned_cols=25 Identities=20% Similarity=0.054 Sum_probs=17.7
Q ss_pred HHHHHHcC----CCeeeecccCCccccee
Q psy7691 70 GWPIALSG----RDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 70 a~~~~l~G----~di~~~a~tgsGKt~~~ 94 (165)
.++.++.| .=+++.|++|+|||...
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~ 85 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFA 85 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 44555544 44788999999999743
No 435
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.16 E-value=31 Score=36.15 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.9
Q ss_pred HHcCCCeeeecccCCcccc
Q psy7691 74 ALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 74 ~l~G~di~~~a~tgsGKt~ 92 (165)
+..|..++.+++||+|||.
T Consensus 1301 l~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHH
T ss_pred HHCCCcEEEECCCCCCHHH
Confidence 4678899999999999994
No 436
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=22.87 E-value=21 Score=26.36 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=13.0
Q ss_pred CCCeeeecccCCcccc
Q psy7691 77 GRDMVGIAQTGSGKTL 92 (165)
Q Consensus 77 G~di~~~a~tgsGKt~ 92 (165)
|+-|+..+..|+|||.
T Consensus 2 ~~~i~~~G~~g~GKtt 17 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKST 17 (241)
T ss_dssp CEEEEEEECTTSSHHH
T ss_pred CeEEEEEcCCCCCHHH
Confidence 4457788999999987
No 437
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=22.79 E-value=26 Score=27.25 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=12.0
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
-+.+++++|||||..
T Consensus 33 ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 356789999999873
No 438
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=22.74 E-value=26 Score=26.60 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=13.2
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++..+++|+|||..
T Consensus 48 ~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTA 62 (327)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 589999999999874
No 439
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=22.73 E-value=27 Score=25.03 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=11.4
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
+..+++.|+|||..
T Consensus 9 i~i~G~sGsGKTTl 22 (174)
T 1np6_A 9 LAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEEeCCCCCHHHH
Confidence 56789999999873
No 440
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=22.69 E-value=27 Score=26.44 Aligned_cols=40 Identities=30% Similarity=0.292 Sum_probs=24.6
Q ss_pred ccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 41 ~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
.|+++--.+...+.|...- .. -+...++..+++|+|||..
T Consensus 15 ~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHH
T ss_pred CHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHH
Confidence 4666555566666665431 10 0122589999999999863
No 441
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=22.68 E-value=27 Score=23.67 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=12.7
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++.++.+|+|||..
T Consensus 10 ~i~v~G~~~~GKSsl 24 (182)
T 1ky3_A 10 KVIILGDSGVGKTSL 24 (182)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999874
No 442
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=22.39 E-value=28 Score=23.31 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.6
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++.++.+|+|||..
T Consensus 8 ~i~v~G~~~~GKSsl 22 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSI 22 (170)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 578899999999864
No 443
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=22.31 E-value=28 Score=25.33 Aligned_cols=14 Identities=43% Similarity=0.468 Sum_probs=11.3
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
.+.++++|+|||..
T Consensus 26 ~~I~G~NgsGKSti 39 (203)
T 3qks_A 26 NLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 35689999999873
No 444
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=22.11 E-value=29 Score=23.20 Aligned_cols=15 Identities=20% Similarity=0.353 Sum_probs=12.3
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++.++.+|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSI 19 (170)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999864
No 445
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=22.11 E-value=28 Score=23.29 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=12.1
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++.++.+|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (170)
T 1g16_A 5 KILLIGDSGVGKSCL 19 (170)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 467889999999863
No 446
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.09 E-value=27 Score=30.68 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCCCccccccCCCcHHHHHHHHhC--CCCCCchHHHHHHHHHHcCC--------CeeeecccCCccc
Q psy7691 35 IPCPTQELTEGCFPNAVLQHLKGQ--GFEEPTAIQAQGWPIALSGR--------DMVGIAQTGSGKT 91 (165)
Q Consensus 35 ~p~~i~~f~~l~l~~~l~~~l~~~--g~~~~t~~Q~~a~~~~l~G~--------di~~~a~tgsGKt 91 (165)
+|..-..+++......+.+.|... |....-..-..++.....|. .++..+++|+|||
T Consensus 436 ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT 502 (758)
T 1r6b_X 436 IPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKT 502 (758)
T ss_dssp CCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHH
T ss_pred CCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHH
No 447
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=22.01 E-value=29 Score=23.94 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=13.0
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++.++.+|+|||..
T Consensus 25 ~i~v~G~~~~GKSsl 39 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSL 39 (195)
T ss_dssp EEEEEEBTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999864
No 448
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.99 E-value=33 Score=26.74 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=11.7
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
.+.++++|+|||..
T Consensus 27 ~~i~G~NGsGKS~l 40 (322)
T 1e69_A 27 TAIVGPNGSGKSNI 40 (322)
T ss_dssp EEEECCTTTCSTHH
T ss_pred EEEECCCCCcHHHH
Confidence 45799999999974
No 449
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.99 E-value=28 Score=30.70 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=14.7
Q ss_pred CCCeeeecccCCcccce
Q psy7691 77 GRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 77 G~di~~~a~tgsGKt~~ 93 (165)
..+++..+++|+|||..
T Consensus 201 ~~~vLL~G~pGtGKT~l 217 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAI 217 (758)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 35799999999999984
No 450
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=21.98 E-value=29 Score=23.06 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=12.4
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++.++.+|+|||..
T Consensus 6 ~i~v~G~~~~GKssl 20 (168)
T 1u8z_A 6 KVIMVGSGGVGKSAL 20 (168)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999864
No 451
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=21.89 E-value=44 Score=20.92 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=28.1
Q ss_pred CCCCccCChHhhcCCHHHHHHHHhhcCcEEecCCCCCCccccccCCCcHHHHHHHHhCCCCC
Q psy7691 1 MHNHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62 (165)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~ 62 (165)
|++||+. .+-.+.|.+.+...= ...+...+...|+ -+..|.+.|++.|+.-
T Consensus 4 lk~FFs~-~~g~~~S~~~Ik~~I---k~lI~~Ed~~kPl-------SD~~I~~~L~~~Gi~I 54 (76)
T 2ahq_A 4 LRTFFVR-ESAEGLTQGELMKLI---KEIVENEDKRKPY-------SDQEIANILKEKGFKV 54 (76)
T ss_dssp CSCCCCC-SSCCSCCHHHHHHHH---HHHGGGCCSSSCC-------CHHHHHHHHTTTSSCC
T ss_pred HHHhcCC-CCCccccHHHHHHHH---HHHHHhcCCCCCC-------CHHHHHHHHHHcCCCc
Confidence 5788887 333455666665433 2233333333443 3456777777777753
No 452
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.76 E-value=41 Score=26.18 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.7
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
+++..++.|+|||..
T Consensus 48 ~~ll~Gp~G~GKTtl 62 (340)
T 1sxj_C 48 HLLFYGPPGTGKTST 62 (340)
T ss_dssp CEEEECSSSSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 378899999999863
No 453
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=21.68 E-value=23 Score=26.56 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=14.4
Q ss_pred HcCCCeeeecccCCcccc
Q psy7691 75 LSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~ 92 (165)
.++.-|+..+..|+|||.
T Consensus 22 ~~~~~I~ieG~~GsGKST 39 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKST 39 (263)
T ss_dssp -CCEEEEEECSTTSSHHH
T ss_pred cCceEEEEECCCCCCHHH
Confidence 355668899999999986
No 454
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=21.68 E-value=29 Score=24.06 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=13.6
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..+++++.+|+|||..
T Consensus 24 ~~i~v~G~~~~GKSsl 39 (195)
T 1svi_A 24 PEIALAGRSNVGKSSF 39 (195)
T ss_dssp CEEEEEEBTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4588999999999864
No 455
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=21.65 E-value=28 Score=27.09 Aligned_cols=14 Identities=29% Similarity=0.237 Sum_probs=12.4
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
++..++.|+|||..
T Consensus 41 ~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 41 YLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEESCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999874
No 456
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=21.62 E-value=63 Score=26.95 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=13.6
Q ss_pred CeeeecccCCcccceee
Q psy7691 79 DMVGIAQTGSGKTLAVI 95 (165)
Q Consensus 79 di~~~a~tgsGKt~~~~ 95 (165)
-++.++++|+|||....
T Consensus 102 vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 36789999999998543
No 457
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=21.51 E-value=30 Score=22.95 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.4
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++.++.+|+|||..
T Consensus 5 ~i~v~G~~~~GKSsl 19 (167)
T 1kao_A 5 KVVVLGSGGVGKSAL 19 (167)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999864
No 458
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=21.49 E-value=29 Score=26.14 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=11.7
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
+..+++.|+|||..
T Consensus 27 ~~liG~nGsGKSTL 40 (240)
T 2onk_A 27 CVLLGPTGAGKSVF 40 (240)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45789999999874
No 459
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=21.44 E-value=25 Score=27.53 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=11.6
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
++.+++.|+|||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 45789999999985
No 460
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=21.34 E-value=20 Score=32.19 Aligned_cols=73 Identities=14% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHhhcCcEEecCCCCCCccccccCCCcHHHHHHHHhCCCCCCchHHHHHHHHHHcCCCeeeecccCCcccc
Q psy7691 20 EAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92 (165)
Q Consensus 20 ~~~~~~~~i~~~~~~~p~~i~~f~~l~l~~~l~~~l~~~g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~ 92 (165)
..+...............+-..|+++.-.+.+.+.|...--..........--.+..+..++..+++|+|||.
T Consensus 454 ~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~ 526 (806)
T 1ypw_A 454 WALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTL 526 (806)
T ss_dssp HHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHH
T ss_pred ccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHH
No 461
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=21.31 E-value=15 Score=26.26 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=11.2
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
+..++++|||||..
T Consensus 5 v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 5 LSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEESCHHHHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45688999999863
No 462
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=21.26 E-value=31 Score=23.10 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=12.4
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++.++.+|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (172)
T 2erx_A 5 RVAVFGAGGVGKSSL 19 (172)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999864
No 463
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=21.12 E-value=25 Score=24.74 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=14.6
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
..|.-+...++.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3455567899999999874
No 464
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=21.10 E-value=28 Score=29.28 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=27.4
Q ss_pred CccccccCCCcHHHHHHHHhC--CCCCCchHHHHHHHHHHcCCCeeeecccCCcccce
Q psy7691 38 PTQELTEGCFPNAVLQHLKGQ--GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 38 ~i~~f~~l~l~~~l~~~l~~~--g~~~~t~~Q~~a~~~~l~G~di~~~a~tgsGKt~~ 93 (165)
+-..|+++.-.++..+.+.+. -+..+...+... +.....++..+++|+|||..
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLL 65 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHH
Confidence 346788875555555555432 111121111000 00113488999999999974
No 465
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=20.94 E-value=31 Score=22.97 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.3
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++.++.+|+|||..
T Consensus 5 ki~v~G~~~~GKssl 19 (167)
T 1c1y_A 5 KLVVLGSGGVGKSAL 19 (167)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999863
No 466
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=20.92 E-value=29 Score=29.24 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=14.0
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++..+++|+|||..
T Consensus 239 ~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLI 254 (489)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CcEEEECcCCCCHHHH
Confidence 4699999999999974
No 467
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=20.89 E-value=31 Score=24.33 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=12.3
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.+..+++.|+|||..
T Consensus 7 kv~lvG~~g~GKSTL 21 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNL 21 (199)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 367889999999874
No 468
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=20.83 E-value=20 Score=24.92 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=11.7
Q ss_pred CCeeeecccCCcccc
Q psy7691 78 RDMVGIAQTGSGKTL 92 (165)
Q Consensus 78 ~di~~~a~tgsGKt~ 92 (165)
..++.++.+|+|||.
T Consensus 21 ~ki~v~G~~~~GKSs 35 (189)
T 1z06_A 21 FKIIVIGDSNVGKTC 35 (189)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 457788888888875
No 469
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=20.81 E-value=31 Score=23.33 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=12.4
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++.++.+|+|||..
T Consensus 9 ~i~v~G~~~~GKSsl 23 (177)
T 1wms_A 9 KVILLGDGGVGKSSL 23 (177)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999863
No 470
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=20.69 E-value=21 Score=28.23 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=15.6
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..++++|+|||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 4566788999999999874
No 471
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=20.62 E-value=18 Score=29.85 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=17.5
Q ss_pred HHHHHHcC----CCeeeecccCCccccee
Q psy7691 70 GWPIALSG----RDMVGIAQTGSGKTLAV 94 (165)
Q Consensus 70 a~~~~l~G----~di~~~a~tgsGKt~~~ 94 (165)
.++.++.| .-+++.|++|+|||...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~ 220 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFA 220 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHH
Confidence 34555544 44778999999999753
No 472
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=20.58 E-value=32 Score=24.52 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=13.5
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++.++++|+|||..
T Consensus 13 ~~i~~~G~~g~GKTsl 28 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSL 28 (218)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4688999999999864
No 473
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=20.50 E-value=31 Score=25.56 Aligned_cols=18 Identities=22% Similarity=0.001 Sum_probs=13.7
Q ss_pred cCCCeeeecccCCcccce
Q psy7691 76 SGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 76 ~G~di~~~a~tgsGKt~~ 93 (165)
.|.-+...++.|||||..
T Consensus 24 ~g~iigI~G~~GsGKSTl 41 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTV 41 (245)
T ss_dssp CSEEEEEECSTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 444466889999999873
No 474
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=20.50 E-value=36 Score=23.30 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=8.7
Q ss_pred CeeeecccCCccccee
Q psy7691 79 DMVGIAQTGSGKTLAV 94 (165)
Q Consensus 79 di~~~a~tgsGKt~~~ 94 (165)
.++.++.+|+|||..+
T Consensus 10 ki~v~G~~~~GKssl~ 25 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVL 25 (183)
T ss_dssp EEEEECCCCC------
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998743
No 475
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=20.23 E-value=32 Score=24.18 Aligned_cols=14 Identities=36% Similarity=0.482 Sum_probs=12.3
Q ss_pred eeeecccCCcccce
Q psy7691 80 MVGIAQTGSGKTLA 93 (165)
Q Consensus 80 i~~~a~tgsGKt~~ 93 (165)
+..+++.|+|||..
T Consensus 32 v~lvG~~g~GKSTL 45 (191)
T 1oix_A 32 VVLIGDSGVGKSNL 45 (191)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECcCCCCHHHH
Confidence 67899999999874
No 476
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.18 E-value=31 Score=28.59 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=13.2
Q ss_pred CeeeecccCCcccce
Q psy7691 79 DMVGIAQTGSGKTLA 93 (165)
Q Consensus 79 di~~~a~tgsGKt~~ 93 (165)
.++..+++|+|||..
T Consensus 52 ~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 52 SMILWGPPGTGKTTL 66 (447)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 588999999999974
No 477
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=20.18 E-value=31 Score=26.85 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.4
Q ss_pred HcCCCeeeecccCCcccce
Q psy7691 75 LSGRDMVGIAQTGSGKTLA 93 (165)
Q Consensus 75 l~G~di~~~a~tgsGKt~~ 93 (165)
-.|.-+..+++.|+|||..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3566677899999999874
No 478
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.15 E-value=31 Score=28.94 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=13.9
Q ss_pred CCeeeecccCCcccce
Q psy7691 78 RDMVGIAQTGSGKTLA 93 (165)
Q Consensus 78 ~di~~~a~tgsGKt~~ 93 (165)
..++..+++|+|||..
T Consensus 78 ~~lLL~GppGtGKTtl 93 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTA 93 (516)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4688999999999874
Done!