Your job contains 1 sequence.
>psy7691
MHNHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGF
EEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSG
TAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQDLANSNPNSKGG
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7691
(165 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 253 1.5e-43 2
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 258 1.4e-42 2
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 249 3.9e-42 2
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 249 3.9e-42 2
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 249 3.9e-42 2
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 249 3.9e-42 2
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 249 3.9e-42 2
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 249 3.9e-42 2
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 249 5.7e-42 2
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 246 8.3e-42 2
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 246 8.4e-42 2
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 238 1.2e-41 2
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 259 1.4e-41 2
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 244 2.5e-41 2
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 244 2.6e-41 2
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 238 3.8e-41 2
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 243 4.1e-41 2
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 238 4.6e-41 2
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 238 1.3e-40 2
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 238 2.1e-40 2
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 238 2.1e-40 2
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 238 2.1e-40 2
UNIPROTKB|E9PT29 - symbol:Ddx17 "Protein Ddx17" species:1... 238 2.1e-40 2
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 238 2.1e-40 2
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 238 3.2e-40 2
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 238 3.2e-40 2
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 238 3.3e-40 2
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 238 3.3e-40 2
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 228 2.8e-39 2
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 241 1.2e-38 2
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 255 6.2e-38 2
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 223 8.6e-38 2
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 223 3.6e-37 2
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 223 3.6e-37 2
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 245 3.7e-36 2
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh... 230 5.6e-35 2
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 227 3.3e-34 2
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 199 4.1e-33 2
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi... 197 7.4e-32 2
TAIR|locus:2119176 - symbol:AT4G33370 species:3702 "Arabi... 195 5.7e-28 2
FB|FBgn0037549 - symbol:CG7878 species:7227 "Drosophila m... 179 7.5e-28 2
GENEDB_PFALCIPARUM|PFL1310c - symbol:PFL1310c "ATP-depend... 174 3.8e-27 2
UNIPROTKB|F1NAH6 - symbol:LOC100859810 "Uncharacterized p... 198 5.8e-27 2
TAIR|locus:2176192 - symbol:AT5G51280 species:3702 "Arabi... 185 1.2e-26 2
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 188 1.4e-26 2
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 188 1.4e-26 2
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 188 1.4e-26 2
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo... 188 1.4e-26 2
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol... 188 1.4e-26 2
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R... 188 1.4e-26 2
UNIPROTKB|A3KN07 - symbol:DDX41 "Uncharacterized protein"... 194 1.7e-26 2
UNIPROTKB|E2R052 - symbol:DDX41 "Uncharacterized protein"... 194 1.7e-26 2
UNIPROTKB|Q9UJV9 - symbol:DDX41 "Probable ATP-dependent R... 194 1.7e-26 2
UNIPROTKB|J3KNN5 - symbol:DDX41 "Probable ATP-dependent R... 194 1.9e-26 2
UNIPROTKB|J9NZF6 - symbol:DDX41 "Uncharacterized protein"... 194 2.0e-26 2
ZFIN|ZDB-GENE-030131-1927 - symbol:ddx41 "DEAD (Asp-Glu-A... 188 2.1e-26 2
MGI|MGI:1920185 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) bo... 191 3.6e-26 2
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 183 4.9e-26 2
TAIR|locus:2074899 - symbol:AT3G09620 species:3702 "Arabi... 175 5.7e-26 2
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"... 166 7.5e-26 2
TAIR|locus:2037416 - symbol:RCF1 "regulator of CBF gene e... 167 1.1e-25 2
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 177 1.3e-25 2
RGD|1559513 - symbol:RGD1559513 "similar to DEAD (Asp-Glu... 185 1.6e-25 2
RGD|1311758 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box po... 185 1.6e-25 2
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 166 2.0e-25 2
UNIPROTKB|F1NVJ6 - symbol:DDX43 "Uncharacterized protein"... 166 2.5e-25 2
FB|FBgn0030631 - symbol:CG6227 species:7227 "Drosophila m... 168 3.3e-25 2
TAIR|locus:2222617 - symbol:AT5G14610 species:3702 "Arabi... 197 3.7e-25 2
DICTYBASE|DDB_G0275443 - symbol:helB1 "putative RNA splic... 165 3.7e-25 2
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he... 175 4.2e-25 2
WB|WBGene00019245 - symbol:sacy-1 species:6239 "Caenorhab... 186 1.4e-24 2
DICTYBASE|DDB_G0287361 - symbol:ddx41 "DEAD box protein a... 164 1.6e-24 2
CGD|CAL0005725 - symbol:PRP5 species:5476 "Candida albica... 161 2.1e-24 2
UNIPROTKB|Q5ADL0 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 161 2.1e-24 2
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al... 176 3.0e-24 2
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE... 172 3.9e-24 2
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 158 4.9e-24 2
DICTYBASE|DDB_G0281925 - symbol:DDB_G0281925 "DEAD/DEAH b... 179 5.0e-24 2
UNIPROTKB|B4DLW8 - symbol:DDX5 "Probable ATP-dependent RN... 231 5.5e-24 2
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 160 5.8e-24 2
UNIPROTKB|F1S0I6 - symbol:DDX43 "Uncharacterized protein"... 153 2.8e-23 2
UNIPROTKB|I3LNN1 - symbol:DDX23 "Uncharacterized protein"... 172 2.8e-23 2
WB|WBGene00018776 - symbol:F53H1.1 species:6239 "Caenorha... 172 5.9e-23 2
RGD|621743 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box pol... 151 9.3e-23 2
UNIPROTKB|G3X7G8 - symbol:DDX59 "Uncharacterized protein"... 172 1.1e-22 2
UNIPROTKB|A4RN46 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 155 1.4e-22 2
MGI|MGI:1925644 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) bo... 149 1.5e-22 2
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 183 1.7e-22 2
WB|WBGene00013214 - symbol:Y54G11A.3 species:6239 "Caenor... 158 1.7e-22 2
FB|FBgn0015331 - symbol:abs "abstrakt" species:7227 "Dros... 176 1.8e-22 2
UNIPROTKB|Q90ZF6 - symbol:olvas "VASA" species:8090 "Oryz... 172 1.8e-22 2
UNIPROTKB|J9P4L6 - symbol:DDX52 "Uncharacterized protein"... 149 1.9e-22 2
UNIPROTKB|E2RB54 - symbol:DDX52 "Uncharacterized protein"... 149 2.0e-22 2
DICTYBASE|DDB_G0277857 - symbol:helB2 "putative U5 small ... 161 2.2e-22 2
UNIPROTKB|I3LJA0 - symbol:DDX52 "Uncharacterized protein"... 146 2.4e-22 2
UNIPROTKB|A5D7C1 - symbol:DDX52 "Probable ATP-dependent R... 148 2.4e-22 2
ASPGD|ASPL0000055571 - symbol:AN1266 species:162425 "Emer... 154 3.4e-22 2
UNIPROTKB|A8MTP9 - symbol:DDX52 "Probable ATP-dependent R... 148 3.5e-22 2
ZFIN|ZDB-GENE-050706-53 - symbol:ddx42 "DEAD (Asp-Glu-Ala... 166 3.5e-22 2
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo... 161 3.8e-22 2
WARNING: Descriptions of 553 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 253 (94.1 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 49/71 (69%), Positives = 56/71 (78%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSE+Y+HRIGRTGRC GTAYTFFTP+N KQA+ELI+VL EA Q L
Sbjct: 563 VINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEEAGQTPSQALL 622
Query: 154 DLANSNPNSKG 164
DLA S P+S G
Sbjct: 623 DLARSMPSSGG 633
Score = 247 (92.0 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 48/79 (60%), Positives = 58/79 (73%)
Query: 15 SESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIA 74
SE +V R++ EITV GN +P P E P V++ +K QGF +PTAIQ+QGWPIA
Sbjct: 212 SEQQVAEIRRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIA 271
Query: 75 LSGRDMVGIAQTGSGKTLA 93
LSGRD+VGIAQTGSGKTLA
Sbjct: 272 LSGRDLVGIAQTGSGKTLA 290
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 258 (95.9 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 48/79 (60%), Positives = 63/79 (79%)
Query: 15 SESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIA 74
S+ EV+ FR+K E+TV+G ++P P + E FP VL +K QGFE+PTAIQ+QGWP+A
Sbjct: 115 SQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMA 174
Query: 75 LSGRDMVGIAQTGSGKTLA 93
LSGRD+VGIA+TGSGKTL+
Sbjct: 175 LSGRDVVGIAETGSGKTLS 193
Score = 224 (83.9 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 41/73 (56%), Positives = 54/73 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPN+SEDY+HRIGRTGR + GTA TFFT +N KQA++L+ +L+EA Q I P+L
Sbjct: 459 VINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVTILSEAKQQIDPRLA 518
Query: 154 DLAN-SNPNSKGG 165
++ S GG
Sbjct: 519 EMVRYSGGGGHGG 531
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 249 (92.7 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 49/84 (58%), Positives = 60/84 (71%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
AR + EVE +R+ KEITV+G+N P P E FP V+ + Q F EPTAIQAQGW
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYL 149
Score = 231 (86.4 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 46/76 (60%), Positives = 55/76 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL- 152
VIN+DYPNSSEDYIHRIGRT R +GTAYTFFTPNN KQ +LI+VL EA+Q I P+L
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 153 ---QDLANSNPNSKGG 165
+D + +GG
Sbjct: 473 QLVEDRGSGRSRGRGG 488
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 249 (92.7 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 49/84 (58%), Positives = 60/84 (71%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
AR + EVE +R+ KEITV+G+N P P E FP V+ + Q F EPTAIQAQGW
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYL 149
Score = 231 (86.4 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 46/76 (60%), Positives = 55/76 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL- 152
VIN+DYPNSSEDYIHRIGRT R +GTAYTFFTPNN KQ +LI+VL EA+Q I P+L
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 153 ---QDLANSNPNSKGG 165
+D + +GG
Sbjct: 473 QLVEDRGSGRSRGRGG 488
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 249 (92.7 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 49/84 (58%), Positives = 60/84 (71%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
AR + EVE +R+ KEITV+G+N P P E FP V+ + Q F EPTAIQAQGW
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYL 149
Score = 231 (86.4 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 46/76 (60%), Positives = 55/76 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL- 152
VIN+DYPNSSEDYIHRIGRT R +GTAYTFFTPNN KQ +LI+VL EA+Q I P+L
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 153 ---QDLANSNPNSKGG 165
+D + +GG
Sbjct: 473 QLVEDRGSGRSRGRGG 488
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 249 (92.7 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 49/84 (58%), Positives = 60/84 (71%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
AR + EVE +R+ KEITV+G+N P P E FP V+ + Q F EPTAIQAQGW
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYL 149
Score = 231 (86.4 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 46/76 (60%), Positives = 55/76 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL- 152
VIN+DYPNSSEDYIHRIGRT R +GTAYTFFTPNN KQ +LI+VL EA+Q I P+L
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 153 ---QDLANSNPNSKGG 165
+D + +GG
Sbjct: 473 QLVEDRGSGRSRGRGG 488
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 249 (92.7 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 49/84 (58%), Positives = 60/84 (71%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
AR + EVE +R+ KEITV+G+N P P E FP V+ + Q F EPTAIQAQGW
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYL 149
Score = 231 (86.4 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 46/76 (60%), Positives = 55/76 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL- 152
VIN+DYPNSSEDYIHRIGRT R +GTAYTFFTPNN KQ +LI+VL EA+Q I P+L
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 153 ---QDLANSNPNSKGG 165
+D + +GG
Sbjct: 473 QLVEDRGSGRSRGRGG 488
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 249 (92.7 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 49/84 (58%), Positives = 60/84 (71%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
AR + EVE +R+ KEITV+G+N P P E FP V+ + Q F EPTAIQAQGW
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYL 149
Score = 231 (86.4 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 46/76 (60%), Positives = 55/76 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL- 152
VIN+DYPNSSEDYIHRIGRT R +GTAYTFFTPNN KQ +LI+VL EA+Q I P+L
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 153 ---QDLANSNPNSKGG 165
+D + +GG
Sbjct: 473 QLVEDRGSGRSRGRGG 488
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 249 (92.7 bits), Expect = 5.7e-42, Sum P(2) = 5.7e-42
Identities = 49/84 (58%), Positives = 60/84 (71%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
AR + EVE +R+ KEITV+G+N P P E FP V+ + Q F EPTAIQAQGW
Sbjct: 123 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 182
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 183 PVALSGLDMVGVAQTGSGKTLSYL 206
Score = 231 (86.4 bits), Expect = 5.7e-42, Sum P(2) = 5.7e-42
Identities = 46/76 (60%), Positives = 55/76 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL- 152
VIN+DYPNSSEDYIHRIGRT R +GTAYTFFTPNN KQ +LI+VL EA+Q I P+L
Sbjct: 470 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 529
Query: 153 ---QDLANSNPNSKGG 165
+D + +GG
Sbjct: 530 QLVEDRGSGRSRGRGG 545
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 246 (91.7 bits), Expect = 8.3e-42, Sum P(2) = 8.3e-42
Identities = 48/84 (57%), Positives = 60/84 (71%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
AR + EV+ +R+ KEITV+G+N P P E FP V+ + Q F EPTAIQAQGW
Sbjct: 66 ARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYL 149
Score = 231 (86.4 bits), Expect = 8.3e-42, Sum P(2) = 8.3e-42
Identities = 46/76 (60%), Positives = 55/76 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL- 152
VIN+DYPNSSEDYIHRIGRT R +GTAYTFFTPNN KQ +LI+VL EA+Q I P+L
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 153 ---QDLANSNPNSKGG 165
+D + +GG
Sbjct: 473 QLVEDRGSGRSRGRGG 488
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 246 (91.7 bits), Expect = 8.4e-42, Sum P(2) = 8.4e-42
Identities = 48/84 (57%), Positives = 60/84 (71%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
AR + EV+ +R+ KEITV+G+N P P E FP V+ + Q F EPTAIQAQGW
Sbjct: 66 ARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYL 149
Score = 231 (86.4 bits), Expect = 8.4e-42, Sum P(2) = 8.4e-42
Identities = 46/76 (60%), Positives = 55/76 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL- 152
VIN+DYPNSSEDYIHRIGRT R +GTAYTFFTPNN KQ +LI+VL EA+Q I P+L
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 153 ---QDLANSNPNSKGG 165
+D + +GG
Sbjct: 473 QLVEDRGSGRSRGRGG 488
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 238 (88.8 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFDYPN+SEDYIHRIGRT R +GTAYTFFTPNN KQA +L++VL EA+Q I P+L
Sbjct: 415 VINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLI 474
Query: 154 DLANSNPN-SKGG 165
+A S+GG
Sbjct: 475 QMAEDRGGRSRGG 487
Score = 238 (88.8 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 48/84 (57%), Positives = 60/84 (71%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
AR S EVE +R+ KEITVKG + P P + E FP V+ + Q + +PT IQAQGW
Sbjct: 68 ARRSAQEVEHYRRSKEITVKGRDGPKPIVKFHEANFPKYVMDVITKQNWTDPTPIQAQGW 127
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ALSG+DMVGIAQTGSGKTL+ +
Sbjct: 128 PVALSGKDMVGIAQTGSGKTLSYL 151
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 259 (96.2 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 47/78 (60%), Positives = 60/78 (76%)
Query: 18 EVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSG 77
E E F EIT+KG+ +P P+ E EG FP+ V+ ++ QGF +PTAIQAQGWPIA+SG
Sbjct: 135 ETETFLTSNEITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSG 194
Query: 78 RDMVGIAQTGSGKTLAVI 95
RD+VG+AQTGSGKTLA +
Sbjct: 195 RDLVGVAQTGSGKTLAYV 212
Score = 220 (82.5 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 42/73 (57%), Positives = 56/73 (76%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYP++SEDY+HRIGRTGR ++GTAYT FT +N +A +LI VL EA+Q I P+L
Sbjct: 476 VINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTINPKLM 535
Query: 154 DLA-NSNPNSKGG 165
++A N N +GG
Sbjct: 536 NMAMNGGYNKRGG 548
Score = 38 (18.4 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 15/58 (25%), Positives = 21/58 (36%)
Query: 111 GRTGRCASSGTAYTF---FTPNNGKQAKELIAVLTEASQPIPPQLQDLANSNPNSKGG 165
G GR G Y + NNG A S PP+ ++P ++GG
Sbjct: 559 GYQGRNPQMGGGYNGGNNYRNNNGPGATMNRNSFNGGSAGGPPRFDQKPRTSPPNQGG 616
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 244 (91.0 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 47/83 (56%), Positives = 60/83 (72%)
Query: 13 RLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWP 72
R + EVE +R KE+TV+G+N P P E FP V++ ++ Q F EPTAIQAQGWP
Sbjct: 55 RRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWP 114
Query: 73 IALSGRDMVGIAQTGSGKTLAVI 95
+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 115 VALSGLDMVGVAQTGSGKTLSYL 137
Score = 228 (85.3 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 44/62 (70%), Positives = 50/62 (80%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSEDYIHRIGRT R +GTAYTFFTPNN KQ +LI+VL EA+Q I P+L
Sbjct: 401 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLL 460
Query: 154 DL 155
L
Sbjct: 461 QL 462
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 244 (91.0 bits), Expect = 2.6e-41, Sum P(2) = 2.6e-41
Identities = 47/83 (56%), Positives = 60/83 (72%)
Query: 13 RLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWP 72
R + EVE +R KE+TV+G+N P P E FP V++ ++ Q F EPTAIQAQGWP
Sbjct: 63 RRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWP 122
Query: 73 IALSGRDMVGIAQTGSGKTLAVI 95
+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 123 VALSGLDMVGVAQTGSGKTLSYL 145
Score = 228 (85.3 bits), Expect = 2.6e-41, Sum P(2) = 2.6e-41
Identities = 44/62 (70%), Positives = 50/62 (80%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSEDYIHRIGRT R +GTAYTFFTPNN KQ +LI+VL EA+Q I P+L
Sbjct: 409 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLL 468
Query: 154 DL 155
L
Sbjct: 469 QL 470
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 238 (88.8 bits), Expect = 3.8e-41, Sum P(2) = 3.8e-41
Identities = 47/88 (53%), Positives = 59/88 (67%)
Query: 6 KTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTA 65
K E S++EV +R++KEI V G N+P P E FPN VL+ +K GFE PT
Sbjct: 88 KEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTP 147
Query: 66 IQAQGWPIALSGRDMVGIAQTGSGKTLA 93
IQ Q WP+A+SGRDMVGI+ TGSGKTL+
Sbjct: 148 IQQQAWPMAMSGRDMVGISATGSGKTLS 175
Score = 231 (86.4 bits), Expect = 3.8e-41, Sum P(2) = 3.8e-41
Identities = 38/72 (52%), Positives = 57/72 (79%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V N+D+P ++EDY+HRIGRTGR + GTAYT+FT +N KQA+EL+++L+EA Q I P+L+
Sbjct: 441 VFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLE 500
Query: 154 DLANSNPNSKGG 165
++A + +GG
Sbjct: 501 EMARYSSGGRGG 512
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 243 (90.6 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
Identities = 48/82 (58%), Positives = 62/82 (75%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
+S+ +VE +R+K+EITV+G+ P P + FP V+ L Q F+EPTAIQAQG+P+
Sbjct: 69 MSQYDVEEYRRKREITVRGSGCPKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPL 128
Query: 74 ALSGRDMVGIAQTGSGKTLAVI 95
ALSGRDMVGIAQTGSGKTLA +
Sbjct: 129 ALSGRDMVGIAQTGSGKTLAYL 150
Score = 229 (85.7 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
Identities = 43/72 (59%), Positives = 53/72 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSEDY+HRIGRT R + GTAYTFFTP N +QA++L+ VL EA Q I P+L
Sbjct: 414 VINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEARQAINPKLL 473
Query: 154 DLANSNPNSKGG 165
L ++ GG
Sbjct: 474 QLVDTGRGGGGG 485
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 238 (88.8 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSEDY+HRIGRT R + GTAYTFFTP N KQA+ELI VL EA+Q I P+L
Sbjct: 409 VINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 468
Query: 154 DLANSNPNSKGG 165
L + GG
Sbjct: 469 QLVDHRGGGGGG 480
Score = 228 (85.3 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
Identities = 49/85 (57%), Positives = 58/85 (68%)
Query: 12 ARLSESEVEAFRQKKEITVKG-NNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
ARL+ EVE R+KKEIT++G P P + FP V+ L Q F EPT IQ QG
Sbjct: 61 ARLTPYEVEELRRKKEITIRGMEGCPKPVFAFHQCSFPQYVMDALMDQNFTEPTPIQCQG 120
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
+P+ALSGRDMVGIAQTGSGKTLA +
Sbjct: 121 FPLALSGRDMVGIAQTGSGKTLAYL 145
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 238 (88.8 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 43/78 (55%), Positives = 60/78 (76%)
Query: 15 SESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIA 74
S++EV+ FR++ + V+G+++P P + E FP V+ +K QGF PTAIQ+QGWP+A
Sbjct: 100 SQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMA 159
Query: 75 LSGRDMVGIAQTGSGKTL 92
LSGRD+VGIA+TGSGKTL
Sbjct: 160 LSGRDVVGIAETGSGKTL 177
Score = 226 (84.6 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 42/72 (58%), Positives = 52/72 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+N+DYPN+SEDYIHRIGRTGR + GTA TFFT N KQA++L+ VL EA Q I P+L
Sbjct: 446 VLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDLLGVLQEAKQEIDPRLA 505
Query: 154 DLANSNPNSKGG 165
++A GG
Sbjct: 506 EMARYGGGGGGG 517
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 238 (88.8 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSEDY+HRIGRT R + GTAYTFFTP N KQA+ELI VL EA+Q I P+L
Sbjct: 411 VINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 470
Query: 154 DLANSNPNSKGG 165
L + GG
Sbjct: 471 QLVDHRGGGGGG 482
Score = 227 (85.0 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 49/85 (57%), Positives = 59/85 (69%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNI-PCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
ARL+ EV+ R+KKEITV+G ++ P P FP V+ L Q F EPT IQ QG
Sbjct: 63 ARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQG 122
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
+P+ALSGRDMVGIAQTGSGKTLA +
Sbjct: 123 FPLALSGRDMVGIAQTGSGKTLAYL 147
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 238 (88.8 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSEDY+HRIGRT R + GTAYTFFTP N KQA+ELI VL EA+Q I P+L
Sbjct: 411 VINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 470
Query: 154 DLANSNPNSKGG 165
L + GG
Sbjct: 471 QLVDHRGGGGGG 482
Score = 227 (85.0 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 49/85 (57%), Positives = 59/85 (69%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNI-PCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
ARL+ EV+ R+KKEITV+G ++ P P FP V+ L Q F EPT IQ QG
Sbjct: 63 ARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQG 122
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
+P+ALSGRDMVGIAQTGSGKTLA +
Sbjct: 123 FPLALSGRDMVGIAQTGSGKTLAYL 147
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 238 (88.8 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSEDY+HRIGRT R + GTAYTFFTP N KQA+ELI VL EA+Q I P+L
Sbjct: 411 VINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 470
Query: 154 DLANSNPNSKGG 165
L + GG
Sbjct: 471 QLVDHRGGGGGG 482
Score = 227 (85.0 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 49/85 (57%), Positives = 59/85 (69%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNI-PCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
ARL+ EV+ R+KKEITV+G ++ P P FP V+ L Q F EPT IQ QG
Sbjct: 63 ARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQG 122
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
+P+ALSGRDMVGIAQTGSGKTLA +
Sbjct: 123 FPLALSGRDMVGIAQTGSGKTLAYL 147
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 238 (88.8 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSEDY+HRIGRT R + GTAYTFFTP N KQA+ELI VL EA+Q I P+L
Sbjct: 410 VINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 469
Query: 154 DLANSNPNSKGG 165
L + GG
Sbjct: 470 QLVDHRGGGGGG 481
Score = 227 (85.0 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 49/85 (57%), Positives = 59/85 (69%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNI-PCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
ARL+ EV+ R+KKEITV+G ++ P P FP V+ L Q F EPT IQ QG
Sbjct: 63 ARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQG 122
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
+P+ALSGRDMVGIAQTGSGKTLA +
Sbjct: 123 FPLALSGRDMVGIAQTGSGKTLAYL 147
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 238 (88.8 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSEDY+HRIGRT R + GTAYTFFTP N KQA+ELI VL EA+Q I P+L
Sbjct: 413 VINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 472
Query: 154 DLANSNPNSKGG 165
L + GG
Sbjct: 473 QLVDHRGGGGGG 484
Score = 227 (85.0 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 49/85 (57%), Positives = 59/85 (69%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNI-PCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
ARL+ EV+ R+KKEITV+G ++ P P FP V+ L Q F EPT IQ QG
Sbjct: 63 ARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQG 122
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
+P+ALSGRDMVGIAQTGSGKTLA +
Sbjct: 123 FPLALSGRDMVGIAQTGSGKTLAYL 147
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 238 (88.8 bits), Expect = 3.2e-40, Sum P(2) = 3.2e-40
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSEDY+HRIGRT R + GTAYTFFTP N KQA+ELI VL EA+Q I P+L
Sbjct: 490 VINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 549
Query: 154 DLANSNPNSKGG 165
L + GG
Sbjct: 550 QLVDHRGGGGGG 561
Score = 227 (85.0 bits), Expect = 3.2e-40, Sum P(2) = 3.2e-40
Identities = 49/85 (57%), Positives = 59/85 (69%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNI-PCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
ARL+ EV+ R+KKEITV+G ++ P P FP V+ L Q F EPT IQ QG
Sbjct: 142 ARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQG 201
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
+P+ALSGRDMVGIAQTGSGKTLA +
Sbjct: 202 FPLALSGRDMVGIAQTGSGKTLAYL 226
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 238 (88.8 bits), Expect = 3.2e-40, Sum P(2) = 3.2e-40
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSEDY+HRIGRT R + GTAYTFFTP N KQA+ELI VL EA+Q I P+L
Sbjct: 490 VINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 549
Query: 154 DLANSNPNSKGG 165
L + GG
Sbjct: 550 QLVDHRGGGGGG 561
Score = 227 (85.0 bits), Expect = 3.2e-40, Sum P(2) = 3.2e-40
Identities = 49/85 (57%), Positives = 59/85 (69%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNI-PCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
ARL+ EV+ R+KKEITV+G ++ P P FP V+ L Q F EPT IQ QG
Sbjct: 142 ARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQG 201
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
+P+ALSGRDMVGIAQTGSGKTLA +
Sbjct: 202 FPLALSGRDMVGIAQTGSGKTLAYL 226
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 238 (88.8 bits), Expect = 3.3e-40, Sum P(2) = 3.3e-40
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSEDY+HRIGRT R + GTAYTFFTP N KQA+ELI VL EA+Q I P+L
Sbjct: 492 VINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 551
Query: 154 DLANSNPNSKGG 165
L + GG
Sbjct: 552 QLVDHRGGGGGG 563
Score = 227 (85.0 bits), Expect = 3.3e-40, Sum P(2) = 3.3e-40
Identities = 49/85 (57%), Positives = 59/85 (69%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNI-PCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
ARL+ EV+ R+KKEITV+G ++ P P FP V+ L Q F EPT IQ QG
Sbjct: 144 ARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQG 203
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
+P+ALSGRDMVGIAQTGSGKTLA +
Sbjct: 204 FPLALSGRDMVGIAQTGSGKTLAYL 228
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 238 (88.8 bits), Expect = 3.3e-40, Sum P(2) = 3.3e-40
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPNSSEDY+HRIGRT R + GTAYTFFTP N KQA+ELI VL EA+Q I P+L
Sbjct: 492 VINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 551
Query: 154 DLANSNPNSKGG 165
L + GG
Sbjct: 552 QLVDHRGGGGGG 563
Score = 227 (85.0 bits), Expect = 3.3e-40, Sum P(2) = 3.3e-40
Identities = 49/85 (57%), Positives = 59/85 (69%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNI-PCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
ARL+ EV+ R+KKEITV+G ++ P P FP V+ L Q F EPT IQ QG
Sbjct: 144 ARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQG 203
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
+P+ALSGRDMVGIAQTGSGKTLA +
Sbjct: 204 FPLALSGRDMVGIAQTGSGKTLAYL 228
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 228 (85.3 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 46/73 (63%), Positives = 55/73 (75%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFDYP +SEDYIHRIGRTGR + GT++ FFT NN KQAK L+ VL EA+Q I P L+
Sbjct: 602 VINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALE 661
Query: 154 DLA-NSNPNSKGG 165
+LA NS + GG
Sbjct: 662 NLARNSRYDGGGG 674
Score = 228 (85.3 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 45/93 (48%), Positives = 65/93 (69%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
N + A S EV+ +R+++EITV+G +P P Q+ +E P+ V++ ++ QG++
Sbjct: 245 NFYQEHPNVANRSPYEVQRYREEQEITVRGQ-VPNPIQDFSEVHLPDYVMKEIRRQGYKA 303
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
PTAIQAQGWPIA+SG + VGIA+TGSGKTL I
Sbjct: 304 PTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYI 336
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 241 (89.9 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 43/84 (51%), Positives = 65/84 (77%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
A ++++EVE +R+ +EITV+G +IP P + + FP+ VL+ +K GF EPT IQ+QGW
Sbjct: 71 AAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGW 130
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+A+ GRD++GIA+TGSGKTL+ +
Sbjct: 131 PMAMKGRDLIGIAETGSGKTLSYL 154
Score = 202 (76.2 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 40/75 (53%), Positives = 49/75 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D+P S EDY+HRIGRTGR + GTAYTFFT N + AKEL +L EA Q + P+L
Sbjct: 416 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELA 475
Query: 154 DLANSN---PNSKGG 165
+ S P GG
Sbjct: 476 SMGRSTAPPPPGLGG 490
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 255 (94.8 bits), Expect = 6.2e-38, Sum P(2) = 6.2e-38
Identities = 50/83 (60%), Positives = 64/83 (77%)
Query: 11 AARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
AAR S+ ++E FR++ E+TVKG++IP P E FP+ VLQ +K QGF +PT IQ QG
Sbjct: 99 AAR-SDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQG 157
Query: 71 WPIALSGRDMVGIAQTGSGKTLA 93
WP+ALSGRDM+GIA TGSGKTL+
Sbjct: 158 WPMALSGRDMIGIAATGSGKTLS 180
Score = 183 (69.5 bits), Expect = 6.2e-38, Sum P(2) = 6.2e-38
Identities = 33/60 (55%), Positives = 44/60 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P + EDY+HRIGRTGR +SGTA +FFT N K +L ++ EA+Q +PP+LQ
Sbjct: 446 VINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREANQTVPPELQ 505
Score = 39 (18.8 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 61 EEPTAIQAQGWP-IALSG------RDMVGIAQTGSGKTLAVINFD 98
E T +++ GWP +A+ G RD V + + GKT ++ D
Sbjct: 389 EITTYLRSDGWPALAIHGDKEQNERDWV-LDEFRKGKTSIMVATD 432
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 223 (83.6 bits), Expect = 8.6e-38, Sum P(2) = 8.6e-38
Identities = 39/82 (47%), Positives = 61/82 (74%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
++E +V +R +++I+V+G ++P P + + FP+ +L+ + GF EPT IQAQGWP+
Sbjct: 139 MTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPM 198
Query: 74 ALSGRDMVGIAQTGSGKTLAVI 95
AL GRD++GIA+TGSGKTLA +
Sbjct: 199 ALKGRDLIGIAETGSGKTLAYL 220
Score = 216 (81.1 bits), Expect = 8.6e-38, Sum P(2) = 8.6e-38
Identities = 39/72 (54%), Positives = 52/72 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+N+D+PN+ EDYIHRIGRTGR + G A+TFFT +N K A+EL+ +L EA Q +PP L
Sbjct: 482 VVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTLS 541
Query: 154 DLANSNPNSKGG 165
L S+ + GG
Sbjct: 542 ALVRSSGSGYGG 553
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 223 (83.6 bits), Expect = 3.6e-37, Sum P(2) = 3.6e-37
Identities = 46/94 (48%), Positives = 61/94 (64%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITV-KGNNIPCPTQELTEGCFPNAVLQHLKGQGFE 61
N K E ++LS EV+ R K +IT+ +G N+P P + + FP+ V++ LK
Sbjct: 75 NFYKEHEDISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIV 134
Query: 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
PT IQ QGWPIALSG+DM+G A+TGSGKTLA I
Sbjct: 135 APTPIQIQGWPIALSGKDMIGKAETGSGKTLAFI 168
Score = 208 (78.3 bits), Expect = 3.6e-37, Sum P(2) = 3.6e-37
Identities = 36/70 (51%), Positives = 52/70 (74%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD+PN EDY+HRIGRTGR S G ++TF T + + AK+L+ +L E+ QP+PPQL+
Sbjct: 432 VINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRESEQPVPPQLE 491
Query: 154 DLANSNPNSK 163
++ S N++
Sbjct: 492 KISYSMGNNQ 501
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 223 (83.6 bits), Expect = 3.6e-37, Sum P(2) = 3.6e-37
Identities = 46/94 (48%), Positives = 61/94 (64%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITV-KGNNIPCPTQELTEGCFPNAVLQHLKGQGFE 61
N K E ++LS EV+ R K +IT+ +G N+P P + + FP+ V++ LK
Sbjct: 75 NFYKEHEDISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIV 134
Query: 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
PT IQ QGWPIALSG+DM+G A+TGSGKTLA I
Sbjct: 135 APTPIQIQGWPIALSGKDMIGKAETGSGKTLAFI 168
Score = 208 (78.3 bits), Expect = 3.6e-37, Sum P(2) = 3.6e-37
Identities = 36/70 (51%), Positives = 52/70 (74%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD+PN EDY+HRIGRTGR S G ++TF T + + AK+L+ +L E+ QP+PPQL+
Sbjct: 432 VINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRESEQPVPPQLE 491
Query: 154 DLANSNPNSK 163
++ S N++
Sbjct: 492 KISYSMGNNQ 501
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 245 (91.3 bits), Expect = 3.7e-36, Sum P(2) = 3.7e-36
Identities = 45/79 (56%), Positives = 60/79 (75%)
Query: 15 SESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIA 74
S+SE+ FR++ E+T+ G++IP P E FP+ VL +K +GF++PT IQ QGWP+A
Sbjct: 88 SDSEIAQFRKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMA 147
Query: 75 LSGRDMVGIAQTGSGKTLA 93
LSGRDMVGIA TGSGKTL+
Sbjct: 148 LSGRDMVGIAATGSGKTLS 166
Score = 176 (67.0 bits), Expect = 3.7e-36, Sum P(2) = 3.7e-36
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
VIN+D P + EDY+HRIGRTGR ++GTA +FFT N +LI+++ EA+Q IPP+L
Sbjct: 432 VINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPEL 490
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 230 (86.0 bits), Expect = 5.6e-35, Sum P(2) = 5.6e-35
Identities = 44/74 (59%), Positives = 55/74 (74%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+DYPN+SEDY+HRIGRTGR GTAYTFFT N +AK+L+ VL EA Q +P L+
Sbjct: 448 VINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVPQALR 507
Query: 154 DLANSN---PNSKG 164
D+AN + NS+G
Sbjct: 508 DMANRSYGGSNSRG 521
Score = 181 (68.8 bits), Expect = 5.6e-35, Sum P(2) = 5.6e-35
Identities = 37/87 (42%), Positives = 56/87 (64%)
Query: 9 ERAA--RLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAI 66
E AA R + E++ + ++T++G +P P E E P + + L G+ F++PT I
Sbjct: 97 ENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHELLYGK-FQKPTVI 155
Query: 67 QAQGWPIALSGRDMVGIAQTGSGKTLA 93
Q+ WPIA+SGRD++ IA+TGSGKTLA
Sbjct: 156 QSISWPIAMSGRDIISIAKTGSGKTLA 182
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 227 (85.0 bits), Expect = 3.3e-34, Sum P(2) = 3.3e-34
Identities = 39/84 (46%), Positives = 59/84 (70%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
++ ++ E+E FR ++TVKG +P P + T+ FP +++ + G GF PT IQ+Q W
Sbjct: 356 SKFTQEEIEKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAW 415
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
PIAL GRD++G+A+TGSGKTLA +
Sbjct: 416 PIALKGRDIIGLAKTGSGKTLAFL 439
Score = 182 (69.1 bits), Expect = 3.3e-34, Sum P(2) = 3.3e-34
Identities = 36/73 (49%), Positives = 52/73 (71%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+N+D+PN+ E YIHRIGRT R +SG +Y+ T +N + A ELI VLTEA Q IP +L
Sbjct: 701 VVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVLTEAKQKIPIELS 760
Query: 154 DLA---NSNPNSK 163
+L+ +++ N+K
Sbjct: 761 NLSVTPSTSSNTK 773
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 199 (75.1 bits), Expect = 4.1e-33, Sum P(2) = 4.1e-33
Identities = 40/85 (47%), Positives = 52/85 (61%)
Query: 11 AARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
+A SE EA+ ++ EITV G +P P FP +L+ + GF PT IQAQ
Sbjct: 129 SAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQS 188
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
WPIA+ GRD+V IA+TGSGKTL +
Sbjct: 189 WPIAMQGRDIVAIAKTGSGKTLGYL 213
Score = 197 (74.4 bits), Expect = 4.1e-33, Sum P(2) = 4.1e-33
Identities = 33/64 (51%), Positives = 49/64 (76%)
Query: 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
AV+N+D+PN EDY+HRIGRTGR ++G A+TFF + K A +LI +L A+Q +PPQ+
Sbjct: 473 AVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQI 532
Query: 153 QDLA 156
+++A
Sbjct: 533 REMA 536
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 197 (74.4 bits), Expect = 7.4e-32, Sum P(2) = 7.4e-32
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D+P EDY+HRIGRTGR ++G A+TFFT + K A +LI VL A+Q +PPQ++
Sbjct: 751 VINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVR 810
Query: 154 DLA 156
D+A
Sbjct: 811 DIA 813
Score = 194 (73.4 bits), Expect = 7.4e-32, Sum P(2) = 7.4e-32
Identities = 39/79 (49%), Positives = 48/79 (60%)
Query: 17 SEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALS 76
S VE +R++ E+T G NIP P P +L+ L GF PT IQAQ WPIAL
Sbjct: 412 SPVEIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQ 471
Query: 77 GRDMVGIAQTGSGKTLAVI 95
RD+V IA+TGSGKTL +
Sbjct: 472 SRDIVAIAKTGSGKTLGYL 490
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 195 (73.7 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
Identities = 38/83 (45%), Positives = 55/83 (66%)
Query: 13 RLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWP 72
++S +++ R++ ITV G +IP P + + FP+ +L+ LK +G PT IQ QG P
Sbjct: 70 KMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLP 129
Query: 73 IALSGRDMVGIAQTGSGKTLAVI 95
+ LSGRDM+GIA TGSGKTL +
Sbjct: 130 VVLSGRDMIGIAFTGSGKTLVFV 152
Score = 150 (57.9 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGK-QAKELIAVLTEASQPIPPQL 152
VIN+D P E+Y+HRIGRTGRC +G A TF N + +L +L EA Q IPP L
Sbjct: 420 VINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVL 479
Query: 153 QDL 155
+L
Sbjct: 480 AEL 482
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 179 (68.1 bits), Expect = 7.5e-28, Sum P(2) = 7.5e-28
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D+P++ E+Y+HR+GRTGR GT+ +FFT + AKELI +L EA Q +P +L
Sbjct: 601 VINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQEAEQEVPDELH 660
Query: 154 DLA 156
++A
Sbjct: 661 NMA 663
Score = 169 (64.5 bits), Expect = 7.5e-28, Sum P(2) = 7.5e-28
Identities = 43/105 (40%), Positives = 59/105 (56%)
Query: 3 NHAKTQERAARLSESEVEAFRQKK-EITV-------KGNNIP-CPTQELT-EGCFPNA-- 50
N K A L++SE+E R++ +ITV +G P P T E CF
Sbjct: 234 NFYKEAPEVANLTKSEIERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQCFAEYPD 293
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+L+ + GF +P+ IQ+Q WPI L G DM+GIAQTG+GKTLA +
Sbjct: 294 MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFL 338
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 174 (66.3 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 36/70 (51%), Positives = 47/70 (67%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT-----PNNGKQAKELIAVLTEASQPI 148
VIN+D PN+ EDYIHRIGRTGR G + FF+ P K AKELI +L + +Q +
Sbjct: 672 VINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAKELIKLLNKTNQTV 731
Query: 149 PPQLQDLANS 158
PPQL+++A S
Sbjct: 732 PPQLKEIAYS 741
Score = 168 (64.2 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 37/94 (39%), Positives = 57/94 (60%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITV-KGNNIPCPTQELTEGCFPNAVLQHLKGQGFE 61
N E+ LS+ +++ +K I + K I + ++ CF ++L +L + F
Sbjct: 250 NDNLNNEQTNCLSKEDIQNELKKNNIYINKDGIIHNIINKFSDVCFHESILNYLNNK-FS 308
Query: 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
EPTAIQ WPIALSG+D++G+A+TGSGKTLA +
Sbjct: 309 EPTAIQKITWPIALSGKDLIGVAETGSGKTLAFV 342
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 198 (74.8 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 46/91 (50%), Positives = 57/91 (62%)
Query: 6 KTQERAAR----LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFE 61
KT RA R +SE+ R+K I V+G IP P + E FP A+L+ LK +G +
Sbjct: 139 KTSWRAPRYILAMSEARHNRVRKKYHILVEGEGIPPPIKSFKEMKFPAAILRGLKKKGIQ 198
Query: 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92
+PT IQ QG P LSGRDM+GIA TGSGKTL
Sbjct: 199 QPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 229
Score = 139 (54.0 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
VIN+D P E+Y+HRIGRTGR ++G A TF + +L A+L EA Q +PP L
Sbjct: 500 VINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 559
Query: 153 QDL 155
Q L
Sbjct: 560 QVL 562
Score = 36 (17.7 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 2 HNHAKTQERAARLSESEVEAFRQKK--EITVKGNNIPCPTQELTEG 45
H H K + A + S E + ++K E +G + +E+ +G
Sbjct: 87 HQHLKEKAEARKESAKEKQLKEEEKILESVAEGRAL-MSVKEMAKG 131
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 185 (70.2 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 37/83 (44%), Positives = 53/83 (63%)
Query: 13 RLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWP 72
++S + + R++ I V G++IP P + + FP VL LK +G +PT IQ QG P
Sbjct: 119 KMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLP 178
Query: 73 IALSGRDMVGIAQTGSGKTLAVI 95
+ L+GRDM+GIA TGSGKTL +
Sbjct: 179 VILAGRDMIGIAFTGSGKTLVFV 201
Score = 149 (57.5 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAK-ELIAVLTEASQPIPPQL 152
VIN+D P E+Y+HRIGRTGRC +G A TF N + +L +L EA Q IPP L
Sbjct: 469 VINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 528
Query: 153 QDL 155
+L
Sbjct: 529 AEL 531
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 188 (71.2 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 12 ARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
A++S+ EV FR + E ITVKG P P + + +L LK G+E+PT IQ Q
Sbjct: 343 AKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
P +SGRD++GIA+TGSGKT+A +
Sbjct: 403 IPAIMSGRDLIGIAKTGSGKTIAFL 427
Score = 152 (58.6 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
+ V+N+ PN EDY+HR GRTGR + G AYTF T + + A ++I L + +PP
Sbjct: 689 ILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPD 748
Query: 152 LQDL 155
L+ L
Sbjct: 749 LEKL 752
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 188 (71.2 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 12 ARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
A++S+ EV FR + E ITVKG P P + + +L LK G+E+PT IQ Q
Sbjct: 343 AKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
P +SGRD++GIA+TGSGKT+A +
Sbjct: 403 IPAIMSGRDLIGIAKTGSGKTIAFL 427
Score = 152 (58.6 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
+ V+N+ PN EDY+HR GRTGR + G AYTF T + + A ++I L + +PP
Sbjct: 689 ILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPD 748
Query: 152 LQDL 155
L+ L
Sbjct: 749 LEKL 752
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 188 (71.2 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 12 ARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
A++S+ EV FR + E ITVKG P P + + +L LK G+E+PT IQ Q
Sbjct: 343 AKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
P +SGRD++GIA+TGSGKT+A +
Sbjct: 403 IPAIMSGRDLIGIAKTGSGKTIAFL 427
Score = 152 (58.6 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
+ V+N+ PN EDY+HR GRTGR + G AYTF T + + A ++I L + +PP
Sbjct: 689 ILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPD 748
Query: 152 LQDL 155
L+ L
Sbjct: 749 LEKL 752
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 188 (71.2 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 12 ARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
A++S+ EV FR + E ITVKG P P + + +L LK G+E+PT IQ Q
Sbjct: 343 AKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
P +SGRD++GIA+TGSGKT+A +
Sbjct: 403 IPAIMSGRDLIGIAKTGSGKTIAFL 427
Score = 152 (58.6 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
+ V+N+ PN EDY+HR GRTGR + G AYTF T + + A ++I L + +PP
Sbjct: 689 ILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPD 748
Query: 152 LQDL 155
L+ L
Sbjct: 749 LEKL 752
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 188 (71.2 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 12 ARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
A++S+ EV FR + E ITVKG P P + + +L LK G+E+PT IQ Q
Sbjct: 343 AKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
P +SGRD++GIA+TGSGKT+A +
Sbjct: 403 IPAIMSGRDLIGIAKTGSGKTIAFL 427
Score = 152 (58.6 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
+ V+N+ PN EDY+HR GRTGR + G AYTF T + + A ++I L + +PP
Sbjct: 689 ILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPD 748
Query: 152 LQDL 155
L+ L
Sbjct: 749 LEKL 752
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 188 (71.2 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 12 ARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
A++S+ EV FR + E ITVKG P P + + +L LK G+E+PT IQ Q
Sbjct: 343 AKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
P +SGRD++GIA+TGSGKT+A +
Sbjct: 403 IPAIMSGRDLIGIAKTGSGKTIAFL 427
Score = 152 (58.6 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
+ V+N+ PN EDY+HR GRTGR + G AYTF T + + A ++I L + +PP
Sbjct: 689 ILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPD 748
Query: 152 LQDL 155
L+ L
Sbjct: 749 LEKL 752
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 194 (73.4 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 42/79 (53%), Positives = 51/79 (64%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
+SE E R+K I V+G+ IP P + E FP A+L+ LK +G PT IQ QG P
Sbjct: 155 MSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPT 214
Query: 74 ALSGRDMVGIAQTGSGKTL 92
LSGRDM+GIA TGSGKTL
Sbjct: 215 ILSGRDMIGIAFTGSGKTL 233
Score = 139 (54.0 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
VIN+D P E+Y+HRIGRTGR ++G A TF + +L A+L EA Q +PP L
Sbjct: 504 VINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 563
Query: 153 QDL 155
Q L
Sbjct: 564 QVL 566
Score = 36 (17.7 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 2 HNHAKTQERAARLSESEVEAFRQKK--EITVKGNNIPCPTQELTEG 45
H H K + A + S E + ++K E +G + +E+ +G
Sbjct: 91 HQHLKEKAEARKESAKEKQLKEEEKILESVAEGRAL-MSVKEMAKG 135
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 194 (73.4 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 42/79 (53%), Positives = 51/79 (64%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
+SE E R+K I V+G+ IP P + E FP A+L+ LK +G PT IQ QG P
Sbjct: 155 MSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPT 214
Query: 74 ALSGRDMVGIAQTGSGKTL 92
LSGRDM+GIA TGSGKTL
Sbjct: 215 ILSGRDMIGIAFTGSGKTL 233
Score = 139 (54.0 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
VIN+D P E+Y+HRIGRTGR ++G A TF + +L A+L EA Q +PP L
Sbjct: 504 VINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 563
Query: 153 QDL 155
Q L
Sbjct: 564 QVL 566
Score = 36 (17.7 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 2 HNHAKTQERAARLSESEVEAFRQKK--EITVKGNNIPCPTQELTEG 45
H H K + A + S E + ++K E +G + +E+ +G
Sbjct: 91 HQHLKEKAEARKESAKEKQLKEEEKILESVAEGRAL-MSVKEMAKG 135
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 194 (73.4 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 42/79 (53%), Positives = 51/79 (64%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
+SE E R+K I V+G+ IP P + E FP A+L+ LK +G PT IQ QG P
Sbjct: 155 MSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPT 214
Query: 74 ALSGRDMVGIAQTGSGKTL 92
LSGRDM+GIA TGSGKTL
Sbjct: 215 ILSGRDMIGIAFTGSGKTL 233
Score = 139 (54.0 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
VIN+D P E+Y+HRIGRTGR ++G A TF + +L A+L EA Q +PP L
Sbjct: 504 VINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 563
Query: 153 QDL 155
Q L
Sbjct: 564 QVL 566
Score = 36 (17.7 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 2 HNHAKTQERAARLSESEVEAFRQKK--EITVKGNNIPCPTQELTEG 45
H H K + A + S E + ++K E +G + +E+ +G
Sbjct: 91 HQHLKEKAEARKESAKEKQLKEEEKILESVAEGRAL-MSVKEMAKG 135
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 194 (73.4 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 42/79 (53%), Positives = 51/79 (64%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
+SE E R+K I V+G+ IP P + E FP A+L+ LK +G PT IQ QG P
Sbjct: 173 MSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPT 232
Query: 74 ALSGRDMVGIAQTGSGKTL 92
LSGRDM+GIA TGSGKTL
Sbjct: 233 ILSGRDMIGIAFTGSGKTL 251
Score = 139 (54.0 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
VIN+D P E+Y+HRIGRTGR ++G A TF + +L A+L EA Q +PP L
Sbjct: 522 VINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 581
Query: 153 QDL 155
Q L
Sbjct: 582 QVL 584
Score = 36 (17.7 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 2 HNHAKTQERAARLSESEVEAFRQKK--EITVKGNNIPCPTQELTEG 45
H H K + A + S E + ++K E +G + +E+ +G
Sbjct: 109 HQHLKEKAEARKESAKEKQLKEEEKILESVAEGRAL-MSVKEMAKG 153
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 194 (73.4 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 42/79 (53%), Positives = 51/79 (64%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
+SE E R+K I V+G+ IP P + E FP A+L+ LK +G PT IQ QG P
Sbjct: 182 MSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPT 241
Query: 74 ALSGRDMVGIAQTGSGKTL 92
LSGRDM+GIA TGSGKTL
Sbjct: 242 ILSGRDMIGIAFTGSGKTL 260
Score = 139 (54.0 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
VIN+D P E+Y+HRIGRTGR ++G A TF + +L A+L EA Q +PP L
Sbjct: 531 VINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 590
Query: 153 QDL 155
Q L
Sbjct: 591 QVL 593
Score = 36 (17.7 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 2 HNHAKTQERAARLSESEVEAFRQKK--EITVKGNNIPCPTQELTEG 45
H H K + A + S E + ++K E +G + +E+ +G
Sbjct: 118 HQHLKEKAEARKESAKEKQLKEEEKILESVAEGRAL-MSVKEMAKG 162
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 188 (71.2 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
Identities = 40/73 (54%), Positives = 47/73 (64%)
Query: 20 EAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRD 79
E R+K I V+G IP P + E FP A+L+ LK +G PT IQ QG P LSGRD
Sbjct: 17 ERVRKKYHILVEGEGIPAPIKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRD 76
Query: 80 MVGIAQTGSGKTL 92
M+GIA TGSGKTL
Sbjct: 77 MIGIAFTGSGKTL 89
Score = 140 (54.3 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
V+N+D P E+Y+HRIGRTGR +G A TF + +L A+L EA Q +PP L
Sbjct: 355 VVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINKGCDESVLMDLKALLVEAKQKVPPVL 414
Query: 153 QDL 155
Q L
Sbjct: 415 QVL 417
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 191 (72.3 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 42/79 (53%), Positives = 51/79 (64%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
+SE E R+K I V+G+ IP P + E FP A+L+ LK +G PT IQ QG P
Sbjct: 155 MSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPT 214
Query: 74 ALSGRDMVGIAQTGSGKTL 92
LSGRDM+GIA TGSGKTL
Sbjct: 215 ILSGRDMIGIAFTGSGKTL 233
Score = 139 (54.0 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
VIN+D P E+Y+HRIGRTGR ++G A TF + +L A+L EA Q +PP L
Sbjct: 504 VINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 563
Query: 153 QDL 155
Q L
Sbjct: 564 QVL 566
Score = 36 (17.7 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 2 HNHAKTQERAARLSESEVEAFRQKK--EITVKGNNIPCPTQELTEG 45
H H K + A + S E + ++K E +G + +E+ +G
Sbjct: 91 HQHLKEKAEARKESAKEKQLKEEEKILESVAEGRAL-MSVKEMAKG 135
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 183 (69.5 bits), Expect = 4.9e-26, Sum P(2) = 4.9e-26
Identities = 39/85 (45%), Positives = 53/85 (62%)
Query: 12 ARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
A++S EV FR + E ITVKG P P + + +L LK G+E+PT IQ Q
Sbjct: 343 AKMSLEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
P +SGRD++GIA+TGSGKT+A +
Sbjct: 403 IPAIMSGRDLIGIAKTGSGKTIAFL 427
Score = 152 (58.6 bits), Expect = 4.9e-26, Sum P(2) = 4.9e-26
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
+ V+N+ PN EDY+HR GRTGR + G AYTF T + + A ++I L + +PP
Sbjct: 689 ILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPD 748
Query: 152 LQDL 155
L+ L
Sbjct: 749 LEKL 752
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 175 (66.7 bits), Expect = 5.7e-26, Sum P(2) = 5.7e-26
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
+R+++ V A+R++ E+ V G ++P P Q + + +L LK +E+P IQAQ
Sbjct: 368 SRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQAL 427
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
PI +SGRD +G+A+TGSGKTL +
Sbjct: 428 PIIMSGRDCIGVAKTGSGKTLGFV 451
Score = 159 (61.0 bits), Expect = 5.7e-26, Sum P(2) = 5.7e-26
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+NFD PN EDY+HR+GRTGR G A TF + ++ K A +L+ L + QP+P ++
Sbjct: 686 VVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDVK 745
Query: 154 DLA 156
+A
Sbjct: 746 AVA 748
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 166 (63.5 bits), Expect = 7.5e-26, Sum P(2) = 7.5e-26
Identities = 46/109 (42%), Positives = 60/109 (55%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEG---CFPNAV-------- 51
N K R A +S EVE +R KE NNI C +L EG C PN V
Sbjct: 8 NFYKESSRTACMSPEEVELWR--KE----NNNIIC--DDLKEGEKRCIPNPVCKFEDVFE 59
Query: 52 -----LQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+ +++ GF++PT IQ+Q WPI L G D++GIAQTG+GKTLA +
Sbjct: 60 QYPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYL 108
Score = 157 (60.3 bits), Expect = 7.5e-26, Sum P(2) = 7.5e-26
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V NFD+P + E+Y+HR+GRTGR +G A T T + K A ELI +L A Q +P +L
Sbjct: 369 VFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQRAKQVVPDELI 428
Query: 154 DLA 156
+A
Sbjct: 429 SMA 431
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 167 (63.8 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 31/84 (36%), Positives = 53/84 (63%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
+R+++ EV +R++ E+ V G ++P P + + + +L +K +E+P IQ Q
Sbjct: 501 SRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQAL 560
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
PI +SGRD +G+A+TGSGKTL +
Sbjct: 561 PIIMSGRDCIGVAKTGSGKTLGFV 584
Score = 166 (63.5 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+NFD PN EDY+HR+GRTGR G A TF + ++ K A +L+ L + QP+P L+
Sbjct: 848 VVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLK 907
Query: 154 DLAN 157
LA+
Sbjct: 908 ALAD 911
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 177 (67.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 36/85 (42%), Positives = 55/85 (64%)
Query: 12 ARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
A++++ EV +R + E ITVKG P P + + +L LK G+E+PT IQ+Q
Sbjct: 342 AKMTQEEVNVYRLEMEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQSQA 401
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
P ++GRD++GIA+TGSGKT+A +
Sbjct: 402 IPAIMNGRDLIGIAKTGSGKTIAFL 426
Score = 154 (59.3 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
+ V+N+ PN EDY+HR GRTGR + G AYTF T + + A ++I L + PIP
Sbjct: 688 MLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALELSGNPIPAD 747
Query: 152 LQDL 155
L+ L
Sbjct: 748 LEKL 751
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 185 (70.2 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 41/79 (51%), Positives = 50/79 (63%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
+SE E R+K I V+G+ IP P + E P A+L+ LK +G PT IQ QG P
Sbjct: 154 MSEERHERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPT 213
Query: 74 ALSGRDMVGIAQTGSGKTL 92
LSGRDM+GIA TGSGKTL
Sbjct: 214 ILSGRDMIGIAFTGSGKTL 232
Score = 139 (54.0 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
VIN+D P E+Y+HRIGRTGR ++G A TF + +L A+L EA Q +PP L
Sbjct: 503 VINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 562
Query: 153 QDL 155
Q L
Sbjct: 563 QVL 565
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 185 (70.2 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 41/79 (51%), Positives = 50/79 (63%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
+SE E R+K I V+G+ IP P + E P A+L+ LK +G PT IQ QG P
Sbjct: 155 MSEERHERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPT 214
Query: 74 ALSGRDMVGIAQTGSGKTL 92
LSGRDM+GIA TGSGKTL
Sbjct: 215 ILSGRDMIGIAFTGSGKTL 233
Score = 139 (54.0 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
VIN+D P E+Y+HRIGRTGR ++G A TF + +L A+L EA Q +PP L
Sbjct: 504 VINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 563
Query: 153 QDL 155
Q L
Sbjct: 564 QVL 566
Score = 36 (17.7 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 2 HNHAKTQERAARLSESEVEAFRQKK--EITVKGNNIPCPTQELTEG 45
H H K + A + S E + ++K E +G + +E+ +G
Sbjct: 91 HQHLKEKAEARKESAKEKQLKEEEKILESVAEGRAL-MSVKEMAKG 135
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 166 (63.5 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 3 NHAKTQERAARLSESEVEAFRQKK-EIT---VKGNN---IPCPTQELTEG--CFPNAVLQ 53
N K + +S+ E +++R++ IT +K IP PT + C+P V++
Sbjct: 197 NFYKESTATSAMSKVEADSWRKENFNITWDDLKDGEKRPIPNPTCTFDDAFQCYPE-VME 255
Query: 54 HLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
++K GF++PT IQ+Q WPI L G D++G+AQTG+GKTL +
Sbjct: 256 NIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYL 297
Score = 158 (60.7 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V NFD+P + E+Y+HRIGRTGR +G + T T N+ + A ELI +L A+Q IP +L
Sbjct: 559 VYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILERANQSIPEELV 618
Query: 154 DLA 156
+A
Sbjct: 619 SMA 621
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 166 (63.5 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
Identities = 46/109 (42%), Positives = 60/109 (55%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEG---CFPNAV-------- 51
N K R A +S EVE +R KE NNI C +L EG C PN V
Sbjct: 195 NFYKESSRTACMSPEEVELWR--KE----NNNIIC--DDLKEGEKRCIPNPVCKFEDVFE 246
Query: 52 -----LQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+ +++ GF++PT IQ+Q WPI L G D++GIAQTG+GKTLA +
Sbjct: 247 QYPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYL 295
Score = 157 (60.3 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V NFD+P + E+Y+HR+GRTGR +G A T T + K A ELI +L A Q +P +L
Sbjct: 556 VFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQRAKQVVPDELI 615
Query: 154 DLA 156
+A
Sbjct: 616 SMA 618
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 168 (64.2 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 37/84 (44%), Positives = 52/84 (61%)
Query: 13 RLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
R++ ++VE +R E I VKG P P + + ++ L+ GFE+PT IQ Q
Sbjct: 482 RMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAI 541
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P +SGRD++GIA+TGSGKTLA I
Sbjct: 542 PAIMSGRDLIGIAKTGSGKTLAFI 565
Score = 161 (61.7 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
+ V+N+D PN EDY+HR GRTGR G+AYTF TP + A ++I + + IP +
Sbjct: 827 ILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGTLIPAE 886
Query: 152 LQDL 155
LQ L
Sbjct: 887 LQAL 890
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 197 (74.4 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 33/63 (52%), Positives = 48/63 (76%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+N+D+PN EDY+HRIGRTGR ++G AYTFF + K A +LI +L A+Q +PPQ++
Sbjct: 545 VVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVR 604
Query: 154 DLA 156
++A
Sbjct: 605 EMA 607
Score = 125 (49.1 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 23/37 (62%), Positives = 28/37 (75%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
GF P+ IQAQ WPIA+ RD+V IA+TGSGKTL +
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYL 284
Score = 68 (29.0 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 25/81 (30%), Positives = 36/81 (44%)
Query: 5 AKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPT 64
A+ +A +E EA+ +K EITV G +P P PN +L+ F P
Sbjct: 126 ARGPPSSAAGNELSPEAYCRKHEITVSGGQVPPPLMSFEATGLPNELLRECPN--FM-PY 182
Query: 65 AIQ-AQGWPIALSGRDMVGIA 84
A+ G AL G ++V A
Sbjct: 183 ALSFVPGAIFALGGANVVRCA 203
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 165 (63.1 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+NFD P+ EDY+HR+GRTGR + GTAYTF TP+ + + +I L ++ +P +L+
Sbjct: 828 VVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKALEQSGSKVPDELR 887
Query: 154 DL 155
L
Sbjct: 888 KL 889
Score = 163 (62.4 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 35/84 (41%), Positives = 52/84 (61%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
A ++E+EV FR + + + G + P P Q + V LK +E+PT+IQAQ
Sbjct: 481 ANMTETEVLDFRSELGVKITGKDCPKPIQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTI 540
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P ++GRD++GIA+TGSGKTLA +
Sbjct: 541 PAIMNGRDLIGIARTGSGKTLAFL 564
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 175 (66.7 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+N+D PN EDY+HR+GRTGR +G A TF TP K A ++ L + QP+P +LQ
Sbjct: 740 VVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQ 799
Query: 154 DLAN 157
LA+
Sbjct: 800 TLAS 803
Score = 151 (58.2 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 9 ERAARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQ 67
E LS +EV+ R + I ++G + P P ++ + + G+E+PT+IQ
Sbjct: 386 EELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQ 445
Query: 68 AQGWPIALSGRDMVGIAQTGSGKTLAVI 95
AQ P SGRD++G+A+TGSGKT+A +
Sbjct: 446 AQAIPAITSGRDVIGVAKTGSGKTIAFL 473
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 186 (70.5 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 39/84 (46%), Positives = 56/84 (66%)
Query: 13 RLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQ-GFEEPTAIQAQGW 71
R S+ + E R++ I+ +G++IP P E FP ++L+ ++ Q G PTAIQ QG
Sbjct: 162 RQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGI 221
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ALSGRDM+GIA TGSGKT+ +
Sbjct: 222 PVALSGRDMIGIASTGSGKTMTFV 245
Score = 129 (50.5 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 29/64 (45%), Positives = 36/64 (56%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
VINFD P E+Y+HRIGRTGR G A TF + +L +L EA Q +P L
Sbjct: 513 VINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLKQLLAEAGQELPEFL 572
Query: 153 QDLA 156
+ LA
Sbjct: 573 KMLA 576
Score = 40 (19.1 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 1 MHNHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGF 60
+ HA+ E + ESE + +++E+ K +T G AV + KG+ +
Sbjct: 98 LEKHAEIMETQGVIDESERQLM-EEEELLDK----------VTRGGGLLAVAELTKGEKY 146
Query: 61 EEP 63
EEP
Sbjct: 147 EEP 149
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 164 (62.8 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 39/91 (42%), Positives = 50/91 (54%)
Query: 6 KTQERAARL----SESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFE 61
KT RA R E + + R + I G +IP P E P V+ L +G +
Sbjct: 184 KTNWRAPRYILERDEKDHQKVRDQLNIITDGEDIPPPITTFKEMKIPKPVIDVLLEKGIK 243
Query: 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92
+P+ IQ QG P+ LSGRDM+GIA TGSGKTL
Sbjct: 244 KPSPIQVQGLPVILSGRDMIGIAYTGSGKTL 274
Score = 152 (58.6 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAK-ELIAVLTEASQPIPPQL 152
VINFD P E+YIHRIGRTGR + G A TF NN + +L +L EA Q +PP L
Sbjct: 546 VINFDMPREIENYIHRIGRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPAL 605
Query: 153 QDLANSN 159
++ + N
Sbjct: 606 LEIPDDN 612
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 161 (61.7 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 14 LSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQ-GFEEPTAIQAQGW 71
LS+ +VE RQ + I VKG ++P P + + P + + + FE+P+AIQ+Q
Sbjct: 266 LSDEQVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQAL 325
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P LSGRD++GIA+TGSGKTL+ +
Sbjct: 326 PTILSGRDVIGIAKTGSGKTLSYV 349
Score = 157 (60.3 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD PN EDY+HR+GRTGR + G A TF + + K+ L+ L + I P+L+
Sbjct: 628 VINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKALKLSHSDIDPKLE 687
Query: 154 DLAN 157
++AN
Sbjct: 688 EIAN 691
Score = 37 (18.1 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 7 TQERAARLSESEVEAFRQKKE 27
++E R ++E +RQKK+
Sbjct: 29 SKEEKLRKRREQLELWRQKKQ 49
Score = 34 (17.0 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1 MHNHAK-TQERAARLSESEVEAFRQKK 26
+ N AK T++ S EV+ RQ++
Sbjct: 58 VQNKAKKTEDSTNNTSTEEVKKSRQQR 84
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 161 (61.7 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 14 LSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQ-GFEEPTAIQAQGW 71
LS+ +VE RQ + I VKG ++P P + + P + + + FE+P+AIQ+Q
Sbjct: 266 LSDEQVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQAL 325
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P LSGRD++GIA+TGSGKTL+ +
Sbjct: 326 PTILSGRDVIGIAKTGSGKTLSYV 349
Score = 157 (60.3 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD PN EDY+HR+GRTGR + G A TF + + K+ L+ L + I P+L+
Sbjct: 628 VINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKALKLSHSDIDPKLE 687
Query: 154 DLAN 157
++AN
Sbjct: 688 EIAN 691
Score = 37 (18.1 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 7 TQERAARLSESEVEAFRQKKE 27
++E R ++E +RQKK+
Sbjct: 29 SKEEKLRKRREQLELWRQKKQ 49
Score = 34 (17.0 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1 MHNHAK-TQERAARLSESEVEAFRQKK 26
+ N AK T++ S EV+ RQ++
Sbjct: 58 VQNKAKKTEDSTNNTSTEEVKKSRQQR 84
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 176 (67.0 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 39/85 (45%), Positives = 53/85 (62%)
Query: 12 ARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
AR+S EV +R + E I+VKG P P + + VL LK +E+PT IQAQ
Sbjct: 328 ARMSPEEVSEYRLELEGISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQA 387
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
P +SGRD++GIA+TGSGKT+A +
Sbjct: 388 IPAIMSGRDLIGIAKTGSGKTIAFL 412
Score = 142 (55.0 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
+ V+N+ PN EDY+HR GRTGR + G AYTF T + + +++ L + +P +
Sbjct: 674 ILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSGSSVPAE 733
Query: 152 LQDL 155
L+ L
Sbjct: 734 LEQL 737
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 172 (65.6 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 33/59 (55%), Positives = 41/59 (69%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
VIN+ +P ++EDY+HRIGRTGR G A+TFFTP N A EL+ VL EA Q +P L
Sbjct: 438 VINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADL 496
Score = 137 (53.3 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 37/85 (43%), Positives = 46/85 (54%)
Query: 11 AARLSESEVEAFRQKKEITVKGNNIP--CPTQELTEGCFPNAVLQHLKGQGFEEPTAIQA 68
A L E E E +QK +T KG + E P VL K FE+P+ IQ+
Sbjct: 87 AEDLGEGESE--QQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQS 142
Query: 69 QGWPIALSGRDMVGIAQTGSGKTLA 93
WP L GRD++GIA+TGSGKTLA
Sbjct: 143 HTWPFLLDGRDLIGIAKTGSGKTLA 167
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 158 (60.7 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 33/96 (34%), Positives = 60/96 (62%)
Query: 9 ERAARLSESEVEAFRQKKEITV-----KGNN--IPCPTQELTEG--CFPNAVLQHLKGQG 59
E+ + +S+ +V+ +R++ + G +P PT + C+P V+++++ G
Sbjct: 202 EKTSSMSQEQVDNWRKENYNIICDDLKDGEKRPLPNPTCNFEDAFHCYPE-VMRNIEKAG 260
Query: 60 FEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
F++PT IQ+Q WPI L G D++G+AQTG+GKTL+ +
Sbjct: 261 FQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYL 296
Score = 153 (58.9 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V N+D+P + E+Y+HR+GRTGR +G + T T N+ K A ELI +L A+Q +P L
Sbjct: 558 VYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELINILERANQSVPEDLV 617
Query: 154 DLA 156
+A
Sbjct: 618 SMA 620
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 179 (68.1 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 22 FRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMV 81
+R+K + ++G + P P Q+ T+ FP + QH+ QGF PT IQ Q WPI L G D+V
Sbjct: 94 WRKKHNVLIEGKSQPNPFQKFTDYEFPR-MFQHIF-QGFTAPTVIQGQSWPIILGGNDLV 151
Query: 82 GIAQTGSGKTLAVI 95
G+A TGSGKTLA +
Sbjct: 152 GLAATGSGKTLAFL 165
Score = 130 (50.8 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
AV N+ P + EDY+HRIGRTGR +G A+++ T ++L+ +L +Q IP L
Sbjct: 432 AVFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVTTQT-PNLRDLVKILQRTNQKIPDFL 490
Query: 153 QDLA 156
+ A
Sbjct: 491 EKFA 494
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 231 (86.4 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 46/76 (60%), Positives = 55/76 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL- 152
VIN+DYPNSSEDYIHRIGRT R +GTAYTFFTPNN KQ +LI+VL EA+Q I P+L
Sbjct: 334 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 393
Query: 153 ---QDLANSNPNSKGG 165
+D + +GG
Sbjct: 394 QLVEDRGSGRSRGRGG 409
Score = 74 (31.1 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPC----PTQELTE 44
AR + EVE +R+ KEITV+G+ C PT+EL +
Sbjct: 66 ARRTAQEVETYRRSKEITVRGDGPICLVLAPTRELAQ 102
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 160 (61.4 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 32/70 (45%), Positives = 45/70 (64%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+N+D E + HRIGRTGR ++G AYT TP + + +LI L ASQ +PP+L
Sbjct: 622 VVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDLIKNLESASQFVPPELI 681
Query: 154 DLANSNPNSK 163
D+A +NP+ K
Sbjct: 682 DVAMNNPHFK 691
Score = 155 (59.6 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
A L+E +V R+ +I + G ++ P F + +LQ + Q E PT IQ Q
Sbjct: 277 ANLTEEQVFEIRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAI 336
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
PIALSGRD++ IA+TGSGKT I
Sbjct: 337 PIALSGRDLIAIAKTGSGKTATFI 360
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 153 (58.9 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 35 IPCPTQELTEG--CFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92
IP P + + C+P ++ ++K GF++PT IQ+Q WPI L G D++G+AQTG+GKTL
Sbjct: 235 IPNPACKFEDAFQCYPEVMI-NIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTL 293
Query: 93 AVI 95
+ +
Sbjct: 294 SYL 296
Score = 151 (58.2 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V N+D+P + E+Y+HR+GRTGR +G + T T ++ K A ELI +L A+Q IP L
Sbjct: 561 VYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGELIHILERANQSIPEDLV 620
Query: 154 DLA 156
++A
Sbjct: 621 EMA 623
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 172 (65.6 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 33/89 (37%), Positives = 53/89 (59%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAI 66
+Q++ +++ + FR+ IT KG IP P + + P +L+ + G++EPT I
Sbjct: 358 SQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPI 417
Query: 67 QAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
Q Q PI L RD++G+A+TGSGKT A +
Sbjct: 418 QRQAIPIGLQNRDIIGVAETGSGKTAAFL 446
Score = 134 (52.2 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 30/66 (45%), Positives = 36/66 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI-AVLTEASQPIPPQL 152
V+N+D + EDYIHRIGRTGR SG A TF T + EL A+L IPP L
Sbjct: 717 VVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSAIPPAL 776
Query: 153 QDLANS 158
+ S
Sbjct: 777 EKQGGS 782
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 172 (65.6 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
Identities = 39/89 (43%), Positives = 61/89 (68%)
Query: 9 ERAARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQH-LKGQGFEEPTAI 66
E R++++EV+A+R++ + ITVKG + P P + + C N + + LK + +PT+I
Sbjct: 272 EEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQ-CGVNLKMMNVLKKFEYSKPTSI 330
Query: 67 QAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
QAQ P +SGRD++GIA+TGSGKTLA +
Sbjct: 331 QAQAIPSIMSGRDVIGIAKTGSGKTLAFL 359
Score = 133 (51.9 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNG-KQAKELIAVLTEASQPIPP 150
+ V+N+D PN EDY+HR+GRTGR G AYTF P + K A E+ A P
Sbjct: 622 ILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETAGCKPPA 681
Query: 151 QLQ 153
L+
Sbjct: 682 DLK 684
Score = 41 (19.5 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 130 NGKQAKE-LIAVLTEASQPIPPQLQ 153
N K AKE +I ++ EA + + QLQ
Sbjct: 936 NLKAAKEEIIRIMKEAFRQLTAQLQ 960
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 151 (58.2 bits), Expect = 9.3e-23, Sum P(2) = 9.3e-23
Identities = 36/91 (39%), Positives = 53/91 (58%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPT---QELT-EGCFPNAVLQHLKGQGFEE 62
T E+ L + ++ FR K +I V+G ++P P Q+L E +LQ++ GF+
Sbjct: 129 TSEKLEHLRKEKINFFRNKHKIHVQGTDLPDPIATFQQLDQEYKISPRLLQNILDAGFQV 188
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
PT IQ Q P+ L GR+++ A TGSGKTLA
Sbjct: 189 PTPIQMQAIPVMLHGRELLASAPTGSGKTLA 219
Score = 147 (56.8 bits), Expect = 9.3e-23, Sum P(2) = 9.3e-23
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D+P SS +YIHRIGRTGR + G A TFFT ++ + + V+ +A P+P ++
Sbjct: 485 VINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIK 544
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 172 (65.6 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 37/85 (43%), Positives = 53/85 (62%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGC-FPNAVLQHLKGQGFEEPTAIQAQG 70
+ L E ++E R++ ITV+G +P P + E C FP A+ ++LK G+E PT IQ Q
Sbjct: 176 SHLREDQIENLRRQLGITVRGRGVPRPIVDF-EHCGFPEALNRNLKASGYEVPTPIQMQM 234
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
P+ L GRD++ A TGSGKT A +
Sbjct: 235 IPVGLLGRDVLASADTGSGKTAAFL 259
Score = 125 (49.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
V+NFD P+S ++Y+H+IGR GR GTA TF N+ + ++ + +PPQL
Sbjct: 518 VVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKRLFWDIAKRVKPTGSLLPPQL 576
Score = 41 (19.5 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPT 39
A + + + R IT N+PCP+
Sbjct: 390 ASVEQLACQLLRDPVAITAGERNLPCPS 417
Score = 39 (18.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 35 IPCPTQELTEGCFPNAVLQHLKGQGFEEP 63
+P PT ++EG P++ G EEP
Sbjct: 63 LPGPTGPVSEGTLPDSEPGTQAGDLPEEP 91
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 155 (59.6 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 12 ARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
+ ++E+EV R + + I V G ++P P Q+ + +L + +++PTAIQ Q
Sbjct: 349 SEMTEAEVAELRLELDGIKVSGKDVPKPVQKWSLCGLTRPILDVIAKLEYDKPTAIQMQA 408
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
P+ +SGRD+VG+A+TGSGKT+A +
Sbjct: 409 LPVIMSGRDVVGVAKTGSGKTMAFL 433
Score = 147 (56.8 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+N+D PN EDY+HR GRTGR ++GTA TF T A + L ++ QP+P +L
Sbjct: 700 VVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENCAIGIAKALEQSGQPVPEKLI 759
Query: 154 DL 155
++
Sbjct: 760 EM 761
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 149 (57.5 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPT---QELTEGCFPNA-VLQHLKGQGFEE 62
T + L + +V FR K +I V+G ++P P Q+L + N+ +LQ++ GF+
Sbjct: 129 TSGKLEHLRKEKVNFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQV 188
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
PT IQ Q P+ L GR+++ A TGSGKTLA
Sbjct: 189 PTPIQMQAIPVMLHGRELLASAPTGSGKTLA 219
Score = 147 (56.8 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D+P SS +YIHRIGRTGR + G A TFFT ++ + + V+ +A P+P ++
Sbjct: 485 VINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIK 544
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 183 (69.5 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 36/72 (50%), Positives = 48/72 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P+ +DY+HRIGRTGR ++G A +FF NN K L+ +L EA+Q +P L
Sbjct: 483 VINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLS 542
Query: 154 DLANSNPNSKGG 165
DL S NS+GG
Sbjct: 543 DL--SRQNSRGG 552
Score = 112 (44.5 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ G ++P P + + +++++K F +PT +Q PI GRD++ AQTG
Sbjct: 142 VDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTG 201
Query: 88 SGKT 91
SGKT
Sbjct: 202 SGKT 205
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 158 (60.7 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 18 EVEAFRQKKEITVKGNNIPCPTQELTEGCFPNA-VLQHLKGQGFEEPTAIQAQGWPIALS 76
+V FR+ E TVK IP P + NA ++ ++ GFE+P+ IQ+Q WP+ LS
Sbjct: 66 KVYPFRE--ESTVK---IPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLS 120
Query: 77 GRDMVGIAQTGSGKTLAVI 95
G+D +G++QTGSGKTLA +
Sbjct: 121 GQDCIGVSQTGSGKTLAFL 139
Score = 135 (52.6 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+N+D+P E+Y+HR+GRTGR G A +F N+ + LI +L ++ Q +P QL+
Sbjct: 410 VLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGLIQILEKSEQEVPDQLR 469
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 176 (67.0 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 37/82 (45%), Positives = 48/82 (58%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
+SE E EA R + I V+G P + E FP +L L +G + PT IQ QG P
Sbjct: 151 MSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPT 210
Query: 74 ALSGRDMVGIAQTGSGKTLAVI 95
L+GRD++GIA TGSGKTL +
Sbjct: 211 VLAGRDLIGIAFTGSGKTLVFV 232
Score = 119 (46.9 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAK-ELIAVLTEASQPIPPQL 152
VIN+D P+ E+Y+HRIGRTGR + G A T + +L +L E Q +P L
Sbjct: 500 VINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFL 559
Query: 153 QDLA 156
+LA
Sbjct: 560 DELA 563
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 172 (65.6 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ-AKELIAVLTEASQPIPPQL 152
V+NFD PN+ +DY+HRIGRTGRC ++G A +F+ P+ Q A+ L+ +L +A Q +P L
Sbjct: 505 VVNFDLPNTIDDYVHRIGRTGRCGNTGRAVSFYDPDVDSQLARSLVGILAKAQQEVPSWL 564
Query: 153 QDLA 156
++ A
Sbjct: 565 EESA 568
Score = 123 (48.4 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G N+P E ++ ++ G+ +PT +Q G PI +GRD++ AQTG
Sbjct: 169 VDVSGTNLPAAIMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTG 228
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 229 SGKTAAFL 236
>UNIPROTKB|J9P4L6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AAEX03026218 Ensembl:ENSCAFT00000021498 Uniprot:J9P4L6
Length = 598
Score = 149 (57.5 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 35/91 (38%), Positives = 54/91 (59%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPT---QELTEGCFPNA-VLQHLKGQGFEE 62
T + L + ++ FR K +I V+G ++P P Q+L + N+ +LQ++ GF+
Sbjct: 127 TSGKLENLRKEKINFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQT 186
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
PT IQ Q P+ L GR+++ A TGSGKTLA
Sbjct: 187 PTPIQMQAIPVMLHGRELLASAPTGSGKTLA 217
Score = 146 (56.5 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D+P SS +YIHRIGRTGR G A TFFT ++ + + V+ +A P+P ++
Sbjct: 483 VINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIK 542
>UNIPROTKB|E2RB54 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:ERESINT
EMBL:AAEX03006616 Ensembl:ENSCAFT00000028820 Uniprot:E2RB54
Length = 601
Score = 149 (57.5 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 35/91 (38%), Positives = 54/91 (59%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPT---QELTEGCFPNA-VLQHLKGQGFEE 62
T + L + ++ FR K +I V+G ++P P Q+L + N+ +LQ++ GF+
Sbjct: 130 TSGKLENLRKEKINFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQT 189
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
PT IQ Q P+ L GR+++ A TGSGKTLA
Sbjct: 190 PTPIQMQAIPVMLHGRELLASAPTGSGKTLA 220
Score = 146 (56.5 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D+P SS +YIHRIGRTGR G A TFFT ++ + + V+ +A P+P ++
Sbjct: 486 VINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIK 545
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 161 (61.7 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
+++ + F++ I+ KG P P + E P +L+ ++ G+E+P+ IQ Q PI
Sbjct: 387 MTKRDWHIFKEDFNISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPI 446
Query: 74 ALSGRDMVGIAQTGSGKTLAVI 95
+L+GRD++GIA+TGSGKT A +
Sbjct: 447 SLTGRDILGIAETGSGKTCAFV 468
Score = 137 (53.3 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 35/87 (40%), Positives = 48/87 (55%)
Query: 82 GIAQTG---SGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELI 138
G+A G G T VINFD P + EDY HRIGRTGR S+G A +F T + + +L
Sbjct: 739 GVASRGIHVDGVT-HVINFDIPKNIEDYTHRIGRTGRAGSAGLASSFITDKDVEIMYDLK 797
Query: 139 AVLTEASQPIPPQLQDLANSNPNSKGG 165
+LT + +P +L L + + K G
Sbjct: 798 QILTSTNNIVPIEL--LKHPSSQQKHG 822
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 146 (56.5 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D+P SS +YIHRIGRTGR G A TFFT ++ + + V+ +A P+P ++
Sbjct: 392 VINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIK 451
Score = 146 (56.5 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 35/91 (38%), Positives = 53/91 (58%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPT---QELT-EGCFPNAVLQHLKGQGFEE 62
T + L + ++ FR K +I V+G ++P P Q+L E + +LQ++ GF+
Sbjct: 36 TSGKLEELRKEKINFFRNKHKIHVQGTDLPDPITTFQQLDQEYKISSRLLQNILDAGFQL 95
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
PT IQ Q P+ L GR+++ A TGSGKTLA
Sbjct: 96 PTPIQMQAIPVMLHGRELLASAPTGSGKTLA 126
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 148 (57.2 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 35/91 (38%), Positives = 55/91 (60%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPT---QELTEGCFPNA-VLQHLKGQGFEE 62
T + +L + ++ FR K +I V+G ++P P Q+L + N+ +LQ++ GF+
Sbjct: 126 TSGKLEQLRKEKLNFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQT 185
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
PT IQ Q P+ L GR+++ A TGSGKTLA
Sbjct: 186 PTPIQMQAIPVMLHGRELLASAPTGSGKTLA 216
Score = 146 (56.5 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D+P SS +YIHRIGRTGR G A TFFT ++ + + V+ +A P+P ++
Sbjct: 482 VINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIK 541
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 154 (59.3 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+N+D PN EDY+HR GRTGR ++GTA TF T + + + ++ L ++ Q +P +Q
Sbjct: 865 VVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKALKQSGQEVPEAVQ 924
Query: 154 DLANS 158
L +S
Sbjct: 925 KLVDS 929
Score = 146 (56.5 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 12 ARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
A++SE E R + + I V+G ++P P Q+ ++ L + GF T+IQAQ
Sbjct: 512 AQMSEEEAANLRLELDGIKVRGLDVPKPVQKWSQCGLGIQTLDVIDKLGFASLTSIQAQA 571
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
P +SGRD++G+A+TGSGKT+A +
Sbjct: 572 IPAIMSGRDVIGVAKTGSGKTMAFL 596
Score = 40 (19.1 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 29 TVKGNNIPCPTQELTEGCFPNAVLQHLKGQG-FEEPTAIQAQG 70
+V GN++ P+ T A +Q K G P ++A+G
Sbjct: 259 SVLGNDVAVPSSAKTSNA-QTARVQASKASGNAPSPAVLKAKG 300
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 148 (57.2 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D+P SS +YIHRIGRTGR + G A TFFT ++ + + V+ +A P+P ++
Sbjct: 376 VINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPVPEYIK 435
Score = 142 (55.0 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 34/91 (37%), Positives = 53/91 (58%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPT---QELTEGCFPNA-VLQHLKGQGFEE 62
T + L + ++ R K +I V+G ++P P Q+L + N+ +LQ++ GF+
Sbjct: 20 TSGKLENLRKEKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQM 79
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
PT IQ Q P+ L GR+++ A TGSGKTLA
Sbjct: 80 PTPIQMQAIPVMLHGRELLASAPTGSGKTLA 110
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 166 (63.5 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 37/93 (39%), Positives = 50/93 (53%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
N E + L+ +EV R+K + V G P P F ++ ++ + +
Sbjct: 220 NFYNEHEEISSLTGAEVVELRRKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQ 279
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
PT IQ QG PIALSGRD +GIA+TGSGKT A I
Sbjct: 280 PTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFI 312
Score = 131 (51.2 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+N+D + + HRIGRTGR G AYT T + A +L+ L A+Q + L
Sbjct: 574 VVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSFAGDLVRNLEGANQSVSKDLL 633
Query: 154 DLANSNP 160
DLA NP
Sbjct: 634 DLAMQNP 640
Score = 34 (17.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 35 IPCPTQELTE 44
I CPT+EL +
Sbjct: 335 IVCPTRELCQ 344
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 161 (61.7 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 35/93 (37%), Positives = 48/93 (51%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
N E L+ ++ R K + V G P P F ++ ++ + +
Sbjct: 216 NFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ 275
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
PT IQ QG P+ALSGRDM+GIA+TGSGKT A I
Sbjct: 276 PTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFI 308
Score = 136 (52.9 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D + + HRIGRTGR G AYT TP + A +L+ L A+Q + +L
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL 629
Query: 154 DLANSN 159
DLA N
Sbjct: 630 DLAMQN 635
Score = 34 (17.0 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 35 IPCPTQELTE 44
I CPT+EL +
Sbjct: 331 IVCPTRELCQ 340
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 161 (61.7 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 35/93 (37%), Positives = 48/93 (51%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
N E L+ ++ R K + V G P P F ++ ++ + +
Sbjct: 216 NFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ 275
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
PT IQ QG P+ALSGRDM+GIA+TGSGKT A I
Sbjct: 276 PTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFI 308
Score = 136 (52.9 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D + + HRIGRTGR G AYT TP + A +L+ L A+Q + +L
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL 629
Query: 154 DLANSN 159
DLA N
Sbjct: 630 DLAMQN 635
Score = 34 (17.0 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 35 IPCPTQELTE 44
I CPT+EL +
Sbjct: 331 IVCPTRELCQ 340
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 161 (61.7 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 35/93 (37%), Positives = 48/93 (51%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
N E L+ ++ R K + V G P P F ++ ++ + +
Sbjct: 216 NFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ 275
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
PT IQ QG P+ALSGRDM+GIA+TGSGKT A I
Sbjct: 276 PTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFI 308
Score = 136 (52.9 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D + + HRIGRTGR G AYT TP + A +L+ L A+Q + +L
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL 629
Query: 154 DLANSN 159
DLA N
Sbjct: 630 DLAMQN 635
Score = 34 (17.0 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 35 IPCPTQELTE 44
I CPT+EL +
Sbjct: 331 IVCPTRELCQ 340
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 161 (61.7 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 35/93 (37%), Positives = 48/93 (51%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
N E L+ ++ R K + V G P P F ++ ++ + +
Sbjct: 216 NFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ 275
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
PT IQ QG P+ALSGRDM+GIA+TGSGKT A I
Sbjct: 276 PTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFI 308
Score = 136 (52.9 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D + + HRIGRTGR G AYT TP + A +L+ L A+Q + +L
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL 629
Query: 154 DLANSN 159
DLA N
Sbjct: 630 DLAMQN 635
Score = 34 (17.0 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 35 IPCPTQELTE 44
I CPT+EL +
Sbjct: 331 IVCPTRELCQ 340
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 161 (61.7 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 35/93 (37%), Positives = 48/93 (51%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
N E L+ ++ R K + V G P P F ++ ++ + +
Sbjct: 216 NFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ 275
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
PT IQ QG P+ALSGRDM+GIA+TGSGKT A I
Sbjct: 276 PTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFI 308
Score = 136 (52.9 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D + + HRIGRTGR G AYT TP + A +L+ L A+Q + +L
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL 629
Query: 154 DLANSN 159
DLA N
Sbjct: 630 DLAMQN 635
Score = 38 (18.4 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 97 FDYPNSSEDYI--HRIGRTGRCASSGTAYTFFTPN---NGKQAKELIAVLTEASQPIPPQ 151
+ +P SS + HR G S+G N NG+ KE ++ + P+
Sbjct: 844 YRHPESSSRHTDGHRHGENRHGGSAGRHGENRGANDGRNGESRKEACNRESKMEPKMEPK 903
Query: 152 LQDLANSNPNSK 163
++ +SN K
Sbjct: 904 MEPKVDSNKMDK 915
Score = 34 (17.0 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 35 IPCPTQELTE 44
I CPT+EL +
Sbjct: 331 IVCPTRELCQ 340
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 153 (58.9 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 35/95 (36%), Positives = 52/95 (54%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPT----QELTEGCFPNAVLQHLKGQ 58
N T E+ RL ++ FR + I V+G ++P P Q E V+++++
Sbjct: 118 NQKPTAEKLERLRREKINRFRNQHRINVQGTDLPDPIATFDQLQKEYKIHPKVIENIQAA 177
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
GF+ PT IQ Q P+ L GR+++ A TGSGKTLA
Sbjct: 178 GFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 212
Score = 139 (54.0 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P S+ +YIHRIGRTGR +G A TFFT ++ + + V+ A P+P ++
Sbjct: 478 VINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTEDDKPLLRSIANVIQRAGCPVPDYIK 537
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 161 (61.7 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 35/93 (37%), Positives = 48/93 (51%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
N E L+ ++ R K + V G P P F ++ ++ + +
Sbjct: 216 NFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ 275
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
PT IQ QG P+ALSGRDM+GIA+TGSGKT A I
Sbjct: 276 PTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFI 308
Score = 136 (52.9 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D + + HRIGRTGR G AYT TP + A +L+ L A+Q + +L
Sbjct: 569 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL 628
Query: 154 DLANSN 159
DLA N
Sbjct: 629 DLAMQN 634
Score = 34 (17.0 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 35 IPCPTQELTE 44
I CPT+EL +
Sbjct: 331 IVCPTRELCQ 340
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 153 (58.9 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 35/95 (36%), Positives = 52/95 (54%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPT----QELTEGCFPNAVLQHLKGQ 58
N T E+ RL ++ FR + I V+G ++P P Q E V+++++
Sbjct: 118 NQKPTAEKLERLRREKINRFRNQHRINVQGTDLPDPIATFDQLQKEYKIHPKVIENIQAA 177
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
GF+ PT IQ Q P+ L GR+++ A TGSGKTLA
Sbjct: 178 GFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 212
Score = 139 (54.0 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P S+ +YIHRIGRTGR +G A TFFT ++ + + V+ A P+P ++
Sbjct: 479 VINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTEDDKPLLRSIANVIQRAGCPVPDYIK 538
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 148 (57.2 bits), Expect = 6.5e-22, Sum P(2) = 6.5e-22
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D+P SS +YIHRIGRTGR + G A TFFT ++ + + V+ +A P+P ++
Sbjct: 484 VINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPVPEYIK 543
Score = 142 (55.0 bits), Expect = 6.5e-22, Sum P(2) = 6.5e-22
Identities = 34/91 (37%), Positives = 53/91 (58%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPT---QELTEGCFPNA-VLQHLKGQGFEE 62
T + L + ++ R K +I V+G ++P P Q+L + N+ +LQ++ GF+
Sbjct: 128 TSGKLENLRKEKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQM 187
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
PT IQ Q P+ L GR+++ A TGSGKTLA
Sbjct: 188 PTPIQMQAIPVMLHGRELLASAPTGSGKTLA 218
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 157 (60.3 bits), Expect = 7.0e-22, Sum P(2) = 7.0e-22
Identities = 35/83 (42%), Positives = 48/83 (57%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGC-FPNAVLQHLKGQGFEEPTAIQAQGWP 72
L + +VE + + I ++G +P P E E C FP + +LK G+E PT IQ Q P
Sbjct: 183 LQDEQVENLKLQLGIAIQGQQVPRPIIEF-EHCGFPETLNSNLKNSGYEVPTPIQMQMIP 241
Query: 73 IALSGRDMVGIAQTGSGKTLAVI 95
+ L GRD+V A TGSGKT A +
Sbjct: 242 VGLLGRDIVASADTGSGKTAAFL 264
Score = 133 (51.9 bits), Expect = 7.0e-22, Sum P(2) = 7.0e-22
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
V+NFD P+S ++Y+H++GR GR SGTA TF N+ K +++ + +PPQL
Sbjct: 523 VVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFWDVVKRVKPTGTILPPQL 581
Score = 49 (22.3 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 132 KQAKELIA-------VLTEASQPIPPQLQDLANS 158
+QAKEL+A VL P+PPQL L S
Sbjct: 295 RQAKELMAGLPNMRTVLLVGGLPLPPQLHRLKQS 328
Score = 48 (22.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 18/52 (34%), Positives = 21/52 (40%)
Query: 39 TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGK 90
T T C N V+QH E TA G P A SG D A+ S +
Sbjct: 47 TATSTSKCDSNEVVQHT-----EPVTAPSDLGVPDASSGEDKGNTAEDSSSE 93
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 148 (57.2 bits), Expect = 8.8e-22, Sum P(2) = 8.8e-22
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
VIN +P + EDY+HRIGRTGR + GTA+T FT + + L +L A+QP+P +L
Sbjct: 472 VINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEKHLSGALCNILRGANQPVPEEL 530
Score = 140 (54.3 bits), Expect = 8.8e-22, Sum P(2) = 8.8e-22
Identities = 32/90 (35%), Positives = 52/90 (57%)
Query: 7 TQE-RAARLSESEVEAFRQKKEITVKGNNIPC--PTQELTEGCFPNAVLQHLKGQGFEEP 63
TQ + + +S+S+++ F EITV+ + P + +A+ L F++P
Sbjct: 119 TQSSKLSSVSQSDIDKFLSDNEITVEDPSSSSLRPILSFDQVQLTSAITSKLSK--FDKP 176
Query: 64 TAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
T IQ+ WP LSG+D++G+A+TGSGKT A
Sbjct: 177 TPIQSVSWPFLLSGKDVIGVAETGSGKTFA 206
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 184 (69.8 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 34/82 (41%), Positives = 51/82 (62%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
++E + FR+ +T+KG IP P + E FP ++ + G++EPT IQ Q PI
Sbjct: 368 MTERDWRIFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPI 427
Query: 74 ALSGRDMVGIAQTGSGKTLAVI 95
L RD++G+A+TGSGKTLA +
Sbjct: 428 GLQNRDIIGVAETGSGKTLAFL 449
Score = 107 (42.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS-QPIPPQL 152
VIN+D + EDY HRIGRTGR +G A +F T ++ +L ++ + PP+L
Sbjct: 738 VINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVTKDDSALFYDLKQCVSASPVSTCPPEL 797
Query: 153 QD 154
+
Sbjct: 798 MN 799
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 145 (56.1 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 37/93 (39%), Positives = 58/93 (62%)
Query: 11 AARLSESEVEAFRQKKE-ITVK----GNNIPCPTQELT-EGCFPN--AVLQHLKGQGFEE 62
AAR +E EV+ +R++ I V G+ P T E F + +++++ GF++
Sbjct: 242 AARSAE-EVKIWRKENNNIFVDDLKDGDKRTIPNPVCTFEEAFAHYPGIMENIVRVGFKK 300
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
PT IQ+Q WP+ L+G D++GIAQTG+GKTLA +
Sbjct: 301 PTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYL 333
Score = 144 (55.7 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
V N+D+P + E+Y+HR+GRTGR SG + T T + + A ELI +L + Q +P +L
Sbjct: 595 VFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELITILERSGQDVPEEL 653
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 178 (67.7 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 34/69 (49%), Positives = 48/69 (69%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTP-NNGKQAKELIAVLTEASQPIPPQL 152
VINFD PN+ EDY+HRIGRTGRC ++G A +FF ++G + L+ VL+EA Q +P L
Sbjct: 491 VINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDDQSDGHLVQSLLKVLSEAQQEVPVWL 550
Query: 153 QDLANSNPN 161
+++A N
Sbjct: 551 EEMAVQRTN 559
Score = 106 (42.4 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ + G + P P E F + +++ G+ + T +Q P+ +GRD++ AQTG
Sbjct: 155 VEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTG 214
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 215 SGKTAAFL 222
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 169 (64.5 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 32/72 (44%), Positives = 49/72 (68%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ-AKELIAVLTEASQPIPPQL 152
V+NFD P+S ++Y+HRIGRTGRC ++G A +FF P + A+ L+ VL+ A Q +P L
Sbjct: 601 VVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNPESDTPLARSLVKVLSGAQQVVPKWL 660
Query: 153 QDLANSNPNSKG 164
+++A S + G
Sbjct: 661 EEVAFSAHGTTG 672
Score = 118 (46.6 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G+N P E +++ +++ G+ +PT +Q G PI +GRD++ AQTG
Sbjct: 265 VDVSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTG 324
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 325 SGKTAAFL 332
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 160 (61.4 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 35/83 (42%), Positives = 51/83 (61%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGC-FPNAVLQHLKGQGFEEPTAIQAQGWP 72
L E ++E +Q+ I+V+G ++ P + E C FP + Q+LK G+E PT IQ Q P
Sbjct: 177 LKEDQIETLKQQLGISVQGQDVARPIIDF-EHCGFPETLNQNLKKSGYEVPTPIQMQMIP 235
Query: 73 IALSGRDMVGIAQTGSGKTLAVI 95
+ L GRD++ A TGSGKT A +
Sbjct: 236 VGLLGRDILASADTGSGKTAAFL 258
Score = 125 (49.1 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
V+NFD P+S ++Y+H++GR GR +GTA TF N+ + ++ + +PPQL
Sbjct: 517 VVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPTGSILPPQL 575
Score = 42 (19.8 bits), Expect = 9.5e-13, Sum P(2) = 9.5e-13
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 132 KQAKELIA-------VLTEASQPIPPQLQDL 155
+QAKEL++ VL P+PPQL L
Sbjct: 289 RQAKELMSGLPRMKTVLLVGGLPLPPQLYRL 319
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 169 (64.5 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 35/72 (48%), Positives = 44/72 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+NFD PN +DY+HRIGRTGR +SG A FF NN AK L ++ EA+Q +P L
Sbjct: 477 VVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVPDWLT 536
Query: 154 DLANSNPNSKGG 165
A S + GG
Sbjct: 537 RYA-SRASFGGG 547
Score = 115 (45.5 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 11 AARLSESEVEAFRQKKEITVK--GNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQA 68
A E+ V F ++I ++ G+N+P P E A+ +++ + +PT +Q
Sbjct: 115 AVNEQENTVINFEAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQR 174
Query: 69 QGWPIALSGRDMVGIAQTGSGKTLA 93
PI +GRD++ AQTGSGKT A
Sbjct: 175 NAIPILAAGRDLMACAQTGSGKTAA 199
>UNIPROTKB|J3QRQ7 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005516
"calmodulin binding" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0045069 "regulation of viral genome replication" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:2746
ChiTaRS:DDX5 Ensembl:ENST00000577922 Uniprot:J3QRQ7
Length = 212
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 49/84 (58%), Positives = 60/84 (71%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
AR + EVE +R+ KEITV+G+N P P E FP V+ + Q F EPTAIQAQGW
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYL 149
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 150 (57.9 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P S++Y+HRIGRTGRC + G A +FF N ++L ++ E++Q +P L
Sbjct: 470 VINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESNQEVPEWLH 529
Query: 154 DLA 156
+A
Sbjct: 530 QVA 532
Score = 132 (51.5 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G+++P + E F AV++++ G+ +PT +Q P L+ RD++ AQTG
Sbjct: 127 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTG 186
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 187 SGKTAAFL 194
>RGD|1359520 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1359520 GO:GO:0005524
GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
Genevestigator:Q66HG7 Uniprot:Q66HG7
Length = 589
Score = 155 (59.6 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGC-FPNAVLQHLKGQGFEEPTAIQAQGWP 72
L + ++E +Q+ I+V+G + P + E C FP + Q+LK G+E PT IQ Q P
Sbjct: 177 LRDDQIETLKQQLGISVQGQEVARPIIDF-EHCGFPETLNQNLKKSGYEVPTPIQMQMIP 235
Query: 73 IALSGRDMVGIAQTGSGKTLAVI 95
+ L GRD++ A TGSGKT A +
Sbjct: 236 VGLLGRDILASADTGSGKTAAFL 258
Score = 124 (48.7 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
V+NFD P+S ++Y+H++GR GR +GTA TF N+ + ++ + +PPQL
Sbjct: 487 VVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPTGSILPPQL 545
Score = 41 (19.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 132 KQAKELI-------AVLTEASQPIPPQLQDL 155
+QAKEL+ VL P+PPQL L
Sbjct: 289 RQAKELMRGLPRMKTVLLVGGLPLPPQLYRL 319
>UNIPROTKB|Q66HG7 [details] [associations]
symbol:Ddx59 "Probable ATP-dependent RNA helicase DDX59"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1359520
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
Genevestigator:Q66HG7 Uniprot:Q66HG7
Length = 589
Score = 155 (59.6 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGC-FPNAVLQHLKGQGFEEPTAIQAQGWP 72
L + ++E +Q+ I+V+G + P + E C FP + Q+LK G+E PT IQ Q P
Sbjct: 177 LRDDQIETLKQQLGISVQGQEVARPIIDF-EHCGFPETLNQNLKKSGYEVPTPIQMQMIP 235
Query: 73 IALSGRDMVGIAQTGSGKTLAVI 95
+ L GRD++ A TGSGKT A +
Sbjct: 236 VGLLGRDILASADTGSGKTAAFL 258
Score = 124 (48.7 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
V+NFD P+S ++Y+H++GR GR +GTA TF N+ + ++ + +PPQL
Sbjct: 487 VVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPTGSILPPQL 545
Score = 41 (19.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 132 KQAKELI-------AVLTEASQPIPPQLQDL 155
+QAKEL+ VL P+PPQL L
Sbjct: 289 RQAKELMRGLPRMKTVLLVGGLPLPPQLYRL 319
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 150 (57.9 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
+ L E ++E R + I V+G +P P + FP + +LK G+E PT IQ Q
Sbjct: 163 SNLREDQIENLRGQLGIVVEGRGVPRPIIDFGHCGFPETLNFNLKTAGYEVPTPIQMQMI 222
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P+ L GRD++ A TGSGKT A +
Sbjct: 223 PVGLLGRDLLASADTGSGKTAAFL 246
Score = 126 (49.4 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
V+NFD P+S ++Y+H++GR GR +GTA TF N+ + ++ + +PPQL
Sbjct: 505 VVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSLLPPQL 563
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 151 (58.2 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 30/89 (33%), Positives = 53/89 (59%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAI 66
+ +R ++E + FR+ I+ KG+ IP P + E + +L+ ++ G+++P+ I
Sbjct: 280 SDKRLEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPI 339
Query: 67 QAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
Q P+ L RD++GIA+TGSGKT A +
Sbjct: 340 QMAAIPLGLQQRDVIGIAETGSGKTAAFV 368
Score = 127 (49.8 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
VIN+D P E Y HRIGRTGR SG A +F T ++ + +L +L +++ +PP+L
Sbjct: 648 VINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPEL 706
>TAIR|locus:2075034 [details] [associations]
symbol:AT3G09720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AC016661
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000242486 KO:K14779 OMA:NVMKQSG EMBL:BT005833
EMBL:AK227326 IPI:IPI00542757 RefSeq:NP_187583.2 UniGene:At.40050
ProteinModelPortal:Q84TG1 SMR:Q84TG1 STRING:Q84TG1 PaxDb:Q84TG1
PRIDE:Q84TG1 EnsemblPlants:AT3G09720.1 GeneID:820129
KEGG:ath:AT3G09720 KEGG:dosa:Os07t0647900-01 GeneFarm:1036
TAIR:At3g09720 InParanoid:Q84TG1 PhylomeDB:Q84TG1
ProtClustDB:CLSN2690529 Genevestigator:Q84TG1 GermOnline:AT3G09720
Uniprot:Q84TG1
Length = 541
Score = 152 (58.6 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 39/86 (45%), Positives = 49/86 (56%)
Query: 16 ESEVEAFRQKK-EITVKGNNIPCPTQELTE-----GCFPNAVLQHLKGQGFEEPTAIQAQ 69
+ E +A +K+ I V GNNIP P + E GC +L++L GF+EPT IQ Q
Sbjct: 112 QMERDALSRKQYSIHVSGNNIPPPLKSFAELSSRYGC-EGYILRNLAELGFKEPTPIQRQ 170
Query: 70 GWPIALSGRDMVGIAQTGSGKTLAVI 95
PI LSGR+ A TGSGKT A I
Sbjct: 171 AIPILLSGRECFACAPTGSGKTFAFI 196
Score = 122 (48.0 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D+P+S+ YIHRIGR+GR SG A TF+T + + + + + +P +
Sbjct: 452 VINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSGCEVPSWIM 511
Query: 154 DL 155
L
Sbjct: 512 SL 513
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 144 (55.7 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 30 VKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSG 89
V G P P F ++ ++ + +PT IQ QG P+ALSGRDM+GIA+TGSG
Sbjct: 243 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSG 302
Query: 90 KTLAVI 95
KT A I
Sbjct: 303 KTAAFI 308
Score = 136 (52.9 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D + + HRIGRTGR G AYT TP + A +L+ L A+Q + +L
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL 629
Query: 154 DLANSN 159
DLA N
Sbjct: 630 DLAMQN 635
Score = 34 (17.0 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 35 IPCPTQELTE 44
I CPT+EL +
Sbjct: 331 IVCPTRELCQ 340
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 144 (55.7 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149
VIN+D+P S+ +YIHRIGRTGR G A TFFT ++ + + V+ +A P+P
Sbjct: 486 VINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSIATVIKKAGCPVP 541
Score = 131 (51.2 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 9 ERAARLSESEVEAFRQKKEITVKGNNIPCPT---QELT-EGCFPNAVLQHLKGQGFEEPT 64
+R +L +V R + I V G +IP P +EL E ++ ++K GF+ PT
Sbjct: 132 KRLKQLHNEKVNRIRHQNRINVHGTDIPDPVTTFEELQKEYDLDPRIIHNIKAAGFQTPT 191
Query: 65 AIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
IQ Q P+ + R+++ A TGSGKT+A
Sbjct: 192 PIQMQAVPLMMHKREILACAPTGSGKTMA 220
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 141 (54.7 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 33/93 (35%), Positives = 48/93 (51%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
N + E RL +V + + V G P P F +++ ++ +E+
Sbjct: 228 NFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEAIRKSEYEQ 287
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
PT IQA P ALSGRD++GIA+TGSGKT A +
Sbjct: 288 PTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYL 320
Score = 137 (53.3 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD + ++HRIGRTGR GTAYT T + + L+ L SQ +P L
Sbjct: 582 VINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVGHLVKNLESVSQEVPKPLM 641
Query: 154 DLA 156
DLA
Sbjct: 642 DLA 644
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 159 (61.0 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 32/70 (45%), Positives = 42/70 (60%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P+ +DY+HRIGRTGR + G A FF NN K LI +L+EA+Q +P L
Sbjct: 515 VINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLIELLSEANQEVPDFLT 574
Query: 154 DLANSNPNSK 163
+A K
Sbjct: 575 KIAREGAFGK 584
Score = 116 (45.9 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ G+ +P P T ++++++ F +PT +Q PI +GRD++ AQTG
Sbjct: 174 VEASGDKVPEPITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTG 233
Query: 88 SGKTLAVINFDYPNSSEDYI 107
SGKT F +P SE Y+
Sbjct: 234 SGKTGG---FLFPVLSESYM 250
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 158 (60.7 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 33/72 (45%), Positives = 43/72 (59%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+NFD PN +DY+HRIGRTGR SG A FF N A+ L ++ EA+Q +P L
Sbjct: 490 VVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLT 549
Query: 154 DLANSNPNSKGG 165
A+ + S GG
Sbjct: 550 RYASRS--SFGG 559
Score = 116 (45.9 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
I G+N+P P E A+ +++ + +PT +Q PI L GRD++ AQTG
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 88 SGKTLA 93
SGKT A
Sbjct: 207 SGKTAA 212
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 146 (56.5 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQH-LKGQGFEEPTAIQAQGWP 72
L E ++E +Q+ I V+G + P + E C VL H LK G+E PT IQ Q P
Sbjct: 177 LQEDQIENLKQQLGILVQGQEVTRPIIDF-EHCSLPEVLNHNLKKSGYEVPTPIQMQMIP 235
Query: 73 IALSGRDMVGIAQTGSGKTLAVI 95
+ L GRD++ A TGSGKT A +
Sbjct: 236 VGLLGRDILASADTGSGKTAAFL 258
Score = 127 (49.8 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
V+NFD P+S ++Y+H+IGR GR +GTA TF N+ + ++ + +PPQL
Sbjct: 517 VVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQL 575
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 139 (54.0 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
V+N +P + EDY+HRIGRTGR + G A T FT + Q+ LI VL A+Q +P L
Sbjct: 395 VVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVLKAANQEVPEAL 453
Score = 130 (50.8 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
GF PTAIQ+ WP+ +GRD++GIA+TGSGKTLA
Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLA 126
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 148 (57.2 bits), Expect = 8.3e-20, Sum P(2) = 8.3e-20
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 23 RQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVG 82
++ I++KG+++P P + E P+ +L+ LK ++EP++IQ P+ L +D++G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 83 IAQTGSGKTLAVI 95
IA+TGSGKT A I
Sbjct: 292 IAETGSGKTAAFI 304
Score = 123 (48.4 bits), Expect = 8.3e-20, Sum P(2) = 8.3e-20
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQP-IPPQL 152
V+N++ S EDY HRIGRTGR SGTA TF P + +L +L+ +++ IP +L
Sbjct: 588 VLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPDEL 647
Query: 153 QD 154
++
Sbjct: 648 RN 649
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 149 (57.5 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
A L + +V R+ + V G + P P F +++ ++ + +PT IQAQ
Sbjct: 241 AALDDEQVRELRRTLGVKVTGPSPPKPVTSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAV 300
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P ALSGRD++GIA+TGSGKT A I
Sbjct: 301 PTALSGRDIIGIAKTGSGKTAAFI 324
Score = 123 (48.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+N+D E + HRIGRTGR G AYT T + + A L+ L A Q +P L
Sbjct: 586 VVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVRNLEGADQLVPDDLM 645
Query: 154 DLA 156
+LA
Sbjct: 646 ELA 648
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 168 (64.2 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 34/72 (47%), Positives = 44/72 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
V+NFD PN +DY+HRIGRTGR SG A FF NN + A+ L ++ EA+Q +P L
Sbjct: 480 VVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLT 539
Query: 154 DLANSNPNSKGG 165
A S + GG
Sbjct: 540 RYA-SRASFGGG 550
Score = 99 (39.9 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ G ++P P + +A+ +++ + PT +Q PI L+ RD++ AQTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 88 SGKTLA 93
SGKT A
Sbjct: 199 SGKTAA 204
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 150 (57.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 14 LSESEVEAFRQKK-EITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWP 72
+ +S+V+ FR+ I V+G N P P Q + P+ +LQ L+ + F++ IQ Q P
Sbjct: 696 MKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNFKKMYNIQMQTIP 755
Query: 73 IALSGRDMVGIAQTGSGKTLAVI 95
+ GRD++ IA+TGSGKTL+ +
Sbjct: 756 ALMCGRDVIAIAETGSGKTLSYL 778
Score = 126 (49.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141
+ VIN+ P+ EDYIHRIGRTGR + G AYTF PN +A ++ +L
Sbjct: 1040 ILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTKAYDIYNLL 1089
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 150 (57.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 14 LSESEVEAFRQKK-EITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWP 72
+ +S+V+ FR+ I V+G N P P Q + P+ +LQ L+ + F++ IQ Q P
Sbjct: 696 MKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNFKKMYNIQMQTIP 755
Query: 73 IALSGRDMVGIAQTGSGKTLAVI 95
+ GRD++ IA+TGSGKTL+ +
Sbjct: 756 ALMCGRDVIAIAETGSGKTLSYL 778
Score = 126 (49.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141
+ VIN+ P+ EDYIHRIGRTGR + G AYTF PN +A ++ +L
Sbjct: 1040 ILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTKAYDIYNLL 1089
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 170 (64.9 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 31/66 (46%), Positives = 48/66 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ-AKELIAVLTEASQPIPPQL 152
VINFD P++ ++Y+HRIGRTGRC ++G A +FF P + A+ L+ VL++A Q +P L
Sbjct: 613 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLAQPLVKVLSDAQQDVPAWL 672
Query: 153 QDLANS 158
+++A S
Sbjct: 673 EEIAFS 678
Score = 98 (39.6 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G++ P E + ++ G+ + T +Q PI L+GRD++ AQTG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 337 SGKTAAFL 344
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 153 (58.9 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P+ ++Y+HRIGRTGR + G A +FF N A+EL+ ++ EA+Q +P L+
Sbjct: 564 VINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEANQELPDWLE 623
Query: 154 DLANSNPNSKGG 165
++ + S GG
Sbjct: 624 GMSG-DMRSGGG 634
Score = 115 (45.5 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 22 FRQKKEITVK--GNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRD 79
F + +EI V+ G+++P P ++ + +++K G++ PT +Q P GRD
Sbjct: 211 FDKYEEIPVEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRD 270
Query: 80 MVGIAQTGSGKTLAVI 95
++ AQTGSGKT A +
Sbjct: 271 LMSCAQTGSGKTAAFL 286
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 168 (64.2 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 31/67 (46%), Positives = 50/67 (74%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFF-TPNNGKQAKELIAVLTEASQPIPPQL 152
VINFD P++ ++Y+HRIGRTGRC ++G A +FF T ++ A+ L+ VL++A Q +P L
Sbjct: 586 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWL 645
Query: 153 QDLANSN 159
+++A S+
Sbjct: 646 EEIAFSS 652
Score = 99 (39.9 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G++ P E + ++ G+ + T +Q PI L+GRD++ AQTG
Sbjct: 250 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 309
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 310 SGKTAAFL 317
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 156 (60.0 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P +DY+HRIGRTGR ++G A FF N ++LI +L EA Q +P L+
Sbjct: 518 VINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLE 577
Query: 154 DLAN--SNPNSKGG 165
+A S +GG
Sbjct: 578 SIAREGSGYGGRGG 591
Score = 110 (43.8 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ G+++P P T + ++ ++ ++ PT +Q PI ++GRD++ AQTG
Sbjct: 174 VEASGHDVPEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTG 233
Query: 88 SGKTLAVINFDYPNSSEDY 106
SGKT F +P S+ Y
Sbjct: 234 SGKTGG---FLFPILSQAY 249
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 167 (63.8 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 31/66 (46%), Positives = 49/66 (74%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFF-TPNNGKQAKELIAVLTEASQPIPPQL 152
VINFD P++ ++Y+HRIGRTGRC ++G A +FF T ++ A+ L+ VL++A Q +P L
Sbjct: 585 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWL 644
Query: 153 QDLANS 158
+++A S
Sbjct: 645 EEIAFS 650
Score = 99 (39.9 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G++ P E + ++ G+ + T +Q PI L+GRD++ AQTG
Sbjct: 249 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 308
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 309 SGKTAAFL 316
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 170 (64.9 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 32/63 (50%), Positives = 42/63 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD P+ E+Y+HRIGRTGR + G A +FF NG K+L+ +L EA Q +P L+
Sbjct: 545 VINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLE 604
Query: 154 DLA 156
LA
Sbjct: 605 SLA 607
Score = 95 (38.5 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 22 FRQKKEITVK--GNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRD 79
F + +I V+ G+N P P + ++ ++ + PT +Q PI S RD
Sbjct: 188 FEKYDDIPVEATGHNGPQPIDRFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRD 247
Query: 80 MVGIAQTGSGKTLAVI 95
++ AQTGSGKT A +
Sbjct: 248 LMACAQTGSGKTAAFL 263
>SGD|S000003139 [details] [associations]
symbol:ROK1 "RNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0030686
"90S preribosome" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0048254 "snoRNA localization" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000472 "endonucleolytic
cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003139
GO:GO:0005524 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:X85757
GO:GO:0030686 GO:GO:0004004 GO:GO:0000447 GO:GO:0000472
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000480
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG OrthoDB:EOG425926 EMBL:Z34901 EMBL:Z72693 PIR:S59649
RefSeq:NP_011344.1 ProteinModelPortal:P45818 SMR:P45818
DIP:DIP-5111N IntAct:P45818 MINT:MINT-483312 STRING:P45818
PaxDb:P45818 PeptideAtlas:P45818 EnsemblFungi:YGL171W GeneID:852704
KEGG:sce:YGL171W CYGD:YGL171w NextBio:972056 Genevestigator:P45818
GermOnline:YGL171W GO:GO:0048254 Uniprot:P45818
Length = 564
Score = 134 (52.2 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P SS+ Y+HRIGRTGR SG A TF+T + K +I V+ ++ + +
Sbjct: 444 VINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWMD 503
Query: 154 DLANSNPNSK 163
+A K
Sbjct: 504 KMAKMTRKEK 513
Score = 128 (50.1 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 18 EVEAFRQKKEITVKGNNIPCPT---QEL-TEGCFPNAVLQHLKGQGFEEPTAIQAQGWPI 73
E A R+ + V G +IP P ++L + F +L +L GF EPT IQ + P+
Sbjct: 96 EASALRKSYKGNVSGIDIPLPIGSFEDLISRFSFDKRLLNNLIENGFTEPTPIQCECIPV 155
Query: 74 ALSGRDMVGIAQTGSGKTLAVI 95
AL+ RD++ TGSGKTLA +
Sbjct: 156 ALNNRDVLACGPTGSGKTLAFL 177
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 165 (63.1 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 31/66 (46%), Positives = 48/66 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT-PNNGKQAKELIAVLTEASQPIPPQL 152
VINFD P++ ++Y+HRIGRTGRC ++G A +FF ++ A+ L+ VLT+A Q +P L
Sbjct: 592 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWL 651
Query: 153 QDLANS 158
+++A S
Sbjct: 652 EEIAFS 657
Score = 98 (39.6 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G++ P E + ++ G+ + T +Q PI L+GRD++ AQTG
Sbjct: 256 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 315
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 316 SGKTAAFL 323
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 165 (63.1 bits), Expect = 6.6e-19, Sum P(2) = 6.6e-19
Identities = 31/66 (46%), Positives = 48/66 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT-PNNGKQAKELIAVLTEASQPIPPQL 152
VINFD P++ ++Y+HRIGRTGRC ++G A +FF ++ A+ L+ VLT+A Q +P L
Sbjct: 610 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWL 669
Query: 153 QDLANS 158
+++A S
Sbjct: 670 EEIAFS 675
Score = 98 (39.6 bits), Expect = 6.6e-19, Sum P(2) = 6.6e-19
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G++ P E + ++ G+ + T +Q PI L+GRD++ AQTG
Sbjct: 274 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 333
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 334 SGKTAAFL 341
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 165 (63.1 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 31/66 (46%), Positives = 48/66 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT-PNNGKQAKELIAVLTEASQPIPPQL 152
VINFD P++ ++Y+HRIGRTGRC ++G A +FF ++ A+ L+ VLT+A Q +P L
Sbjct: 612 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWL 671
Query: 153 QDLANS 158
+++A S
Sbjct: 672 EEIAFS 677
Score = 98 (39.6 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G++ P E + ++ G+ + T +Q PI L+GRD++ AQTG
Sbjct: 276 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 335
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 336 SGKTAAFL 343
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 165 (63.1 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 31/66 (46%), Positives = 48/66 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT-PNNGKQAKELIAVLTEASQPIPPQL 152
VINFD P++ ++Y+HRIGRTGRC ++G A +FF ++ A+ L+ VLT+A Q +P L
Sbjct: 613 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWL 672
Query: 153 QDLANS 158
+++A S
Sbjct: 673 EEIAFS 678
Score = 98 (39.6 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G++ P E + ++ G+ + T +Q PI L+GRD++ AQTG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 337 SGKTAAFL 344
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 163 (62.4 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 30/67 (44%), Positives = 50/67 (74%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFF-TPNNGKQAKELIAVLTEASQPIPPQL 152
VINF+ P++ ++Y+HRIGRTGRC ++G A +FF T ++ A+ L+ VL++A Q +P L
Sbjct: 597 VINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWL 656
Query: 153 QDLANSN 159
+++A S+
Sbjct: 657 EEIAFSS 663
Score = 99 (39.9 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G++ P E + ++ G+ + T +Q PI L+GRD++ AQTG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 321 SGKTAAFL 328
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 163 (62.4 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 30/67 (44%), Positives = 50/67 (74%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFF-TPNNGKQAKELIAVLTEASQPIPPQL 152
VINF+ P++ ++Y+HRIGRTGRC ++G A +FF T ++ A+ L+ VL++A Q +P L
Sbjct: 597 VINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWL 656
Query: 153 QDLANSN 159
+++A S+
Sbjct: 657 EEIAFSS 663
Score = 99 (39.9 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G++ P E + ++ G+ + T +Q PI L+GRD++ AQTG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 321 SGKTAAFL 328
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 152 (58.6 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 29/52 (55%), Positives = 39/52 (75%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTP-NNGKQAKELIAVLTEA 144
VINFD PN+ EDY+HRIGRTGRC ++G A +FF ++G + L+ VL+EA
Sbjct: 491 VINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDDQSDGHLVQSLLKVLSEA 542
Score = 106 (42.4 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ + G + P P E F + +++ G+ + T +Q P+ +GRD++ AQTG
Sbjct: 155 VEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTG 214
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 215 SGKTAAFL 222
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 157 (60.3 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ---AKELIAVLTEASQPIPP 150
VINFD P+ ++Y+HRIGRTGRC ++G A +FF + A+ L+ VL++A Q +P
Sbjct: 610 VINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFDKRGDDEQRIARSLVKVLSDAHQEVPA 669
Query: 151 QLQDLANS 158
L+++A S
Sbjct: 670 WLEEVAFS 677
Score = 103 (41.3 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G+++P E +++ +++ G+ + T IQ PI ++GRD++ AQTG
Sbjct: 274 VEVSGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTG 333
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 334 SGKTAAFL 341
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 132 (51.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 35/93 (37%), Positives = 49/93 (52%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELT--EGCFP--NAVLQHLKGQ 58
N ++E + E+ FR K I V G +IP P E + E F +L ++
Sbjct: 158 NKKVSKETQEDKHKREIATFRNKHRIKVDGTDIPDPMTEFSQLENRFKVRKYLLNNINEI 217
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
G++EP+ IQ Q PI L R++V IA TGSGKT
Sbjct: 218 GYKEPSPIQMQVIPILLKEREVVAIAPTGSGKT 250
Score = 127 (49.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD+P++ YIHRIGRTGR G AYT +T + ++ + ++ +P +
Sbjct: 512 VINFDFPHTLASYIHRIGRTGRAGRPGVAYTLYTDADTPMLPTIVHAMKQSGSHVPDWML 571
Query: 154 DL 155
+L
Sbjct: 572 NL 573
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 164 (62.8 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD P+ E+Y+HRIGRTGR + G A +FF N K+L+ +L EA Q +P L+
Sbjct: 490 VINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLE 549
Query: 154 DLANSNPNSKGG 165
++A + GG
Sbjct: 550 NMAYEQHHKGGG 561
Score = 92 (37.4 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 22 FRQKKEITVK--GNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRD 79
F + +I V+ G+N P + ++ ++ +++ + PT +Q PI RD
Sbjct: 136 FEKYDDIPVEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRD 195
Query: 80 MVGIAQTGSGKTLAVI 95
++ AQTGSGKT A +
Sbjct: 196 LMACAQTGSGKTAAFL 211
>POMBASE|SPAC22F3.08c [details] [associations]
symbol:rok1 "ATP-dependent RNA helicase Rok1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC22F3.08c GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000242486 KO:K14779
PIR:T38183 RefSeq:NP_593033.1 ProteinModelPortal:Q09775
STRING:Q09775 EnsemblFungi:SPAC22F3.08c.1 GeneID:2541786
KEGG:spo:SPAC22F3.08c OMA:ERESINT OrthoDB:EOG425926
NextBio:20802875 Uniprot:Q09775
Length = 481
Score = 146 (56.5 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD+P S YIHRIGRTGR ++G A TFFT +G+ K + V+ + +P +
Sbjct: 360 VINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVM 419
Query: 154 DLANSNPNSK 163
L + K
Sbjct: 420 ALPKPSKEMK 429
Score = 105 (42.0 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 30/84 (35%), Positives = 42/84 (50%)
Query: 14 LSESEVEAFR--QKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
+ E E + + K + V GNN P +E EG + ++LK Q E T IQ
Sbjct: 22 IKEKEAKKLQGITKGKAKVTGNNPVDPIEEFPEGI----LCENLKKQNITECTTIQRYAI 77
Query: 72 PIALSGRDMVGIAQTGSGKTLAVI 95
P S RD++ A TGSGKT+A +
Sbjct: 78 PTIGSKRDLLACAPTGSGKTIAYL 101
Score = 37 (18.1 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 116 CASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQDLANSN 159
C SS + F+ + +EL V+T I L+D A +
Sbjct: 217 CTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDS 260
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 154 (59.3 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD P+ E+Y+HRIGRTGR + G A +FF N +L+ +L E Q IP ++
Sbjct: 631 VINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETKQEIPSFME 690
Query: 154 DLANSNPNSKGG 165
D+ S+ GG
Sbjct: 691 DM--SSDRGHGG 700
Score = 103 (41.3 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 22 FRQKKEITVK--GNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRD 79
F + ++I V+ G N+P + + ++ +++PT +Q PI ++GRD
Sbjct: 275 FDKYEDIPVEATGQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRD 334
Query: 80 MVGIAQTGSGKTLAVI 95
++ AQTGSGKT A +
Sbjct: 335 LMACAQTGSGKTAAFL 350
Score = 47 (21.6 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 5 AKTQERAARLSESEVEAF----RQKKEITVKGNNIPCPTQELTEGC 46
A T+E A ++ E E + F R + + GNN +EL GC
Sbjct: 385 APTRELATQIFE-EAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGC 429
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 155 (59.6 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ-AKELIAVLTEASQPIPPQL 152
VIN+D P ++Y+HRIGRTGRC ++G A +FF + A+ L+ +LT+A Q +P L
Sbjct: 598 VINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHVIARPLVKILTDAHQEVPAWL 657
Query: 153 QDLA 156
+++A
Sbjct: 658 EEIA 661
Score = 99 (39.9 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G ++P E + +++ G+ + T +Q PI ++GRD++ AQTG
Sbjct: 262 VDVTGKDVPPAILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTG 321
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 322 SGKTAAFL 329
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 165 (63.1 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
Identities = 31/66 (46%), Positives = 48/66 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ-AKELIAVLTEASQPIPPQL 152
VINFD P++ ++Y+HRIGRTGRC ++G A +FF + Q A+ L+ VL++A Q +P L
Sbjct: 614 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWL 673
Query: 153 QDLANS 158
+++A S
Sbjct: 674 EEIAFS 679
Score = 89 (36.4 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G++ P E + ++ G+ + T +Q PI GRD++ AQTG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 338 SGKTAAFL 345
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 165 (63.1 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
Identities = 31/66 (46%), Positives = 48/66 (72%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQ-AKELIAVLTEASQPIPPQL 152
VINFD P++ ++Y+HRIGRTGRC ++G A +FF + Q A+ L+ VL++A Q +P L
Sbjct: 614 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWL 673
Query: 153 QDLANS 158
+++A S
Sbjct: 674 EEIAFS 679
Score = 89 (36.4 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ V G++ P E + ++ G+ + T +Q PI GRD++ AQTG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 88 SGKTLAVI 95
SGKT A +
Sbjct: 338 SGKTAAFL 345
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 151 (58.2 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN-NGKQAKELIAVLTEASQPIP 149
VINFD P++ ++Y+HRIGRTGRC ++G A +FF P + A+ L+ VL++A Q P
Sbjct: 592 VINFDLPSTIDEYVHRIGRTGRCGNTGKAISFFDPEPDSHLAQPLVKVLSDAQQGCP 648
Score = 102 (41.0 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 28 ITVKGNNIPCP--TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQ 85
+ V G++ P T E T+ C + + G+ + T +Q G PI L+GRD++ AQ
Sbjct: 254 VEVSGHDAPPAILTFEETDLC--QTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQ 311
Query: 86 TGSGKTLAVI 95
TGSGKT A +
Sbjct: 312 TGSGKTAAFL 321
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 156 (60.0 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD P+ E+Y+HRIGRTGR + G A +FF N K+L+ +L EA Q +P L+
Sbjct: 512 VINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSWLE 571
Query: 154 DLA 156
+A
Sbjct: 572 SMA 574
Score = 95 (38.5 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 22 FRQKKEITVK--GNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRD 79
F + +I V+ GNN P + ++ ++ +++ + PT +Q PI RD
Sbjct: 159 FEKYDDIPVEATGNNCPPHIENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRD 218
Query: 80 MVGIAQTGSGKTLAVI 95
++ AQTGSGKT A +
Sbjct: 219 LMACAQTGSGKTAAFL 234
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 141 (54.7 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 7 TQERAARLSESEVEAFRQK---KEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEP 63
T+++ S+SE E+ + K+ T P P + E + + + + G++ P
Sbjct: 10 TEKQPETNSDSEAESVSSRGSAKDETQTSGEEPAPAKSFKELGIIDQLCEACENMGYKAP 69
Query: 64 TAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
T IQ+Q P+AL GRD++G+A+TGSGKT A
Sbjct: 70 TPIQSQAIPLALEGRDVIGLAETGSGKTAA 99
Score = 102 (41.0 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127
V NFD P S+ YIHR+GRT R SG A +F T
Sbjct: 357 VFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVT 390
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 151 (58.2 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
VIN+D PN+ +DYIHRIGRTGR +SG A +F + + Q +L+ L +A Q +P +
Sbjct: 635 VINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWM 694
Query: 153 QDLAN--SNPN 161
++ A SNPN
Sbjct: 695 KEAAGGTSNPN 705
Score = 97 (39.2 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 22 FRQKKEITVKGNNIPC-PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDM 80
F ++ +G + P + ++ P ++ ++++ G+ T IQ P+ G+D+
Sbjct: 279 FDASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDI 338
Query: 81 VGIAQTGSGKTLAVI 95
+ AQTGSGKT A +
Sbjct: 339 LACAQTGSGKTAAFL 353
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 151 (58.2 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
VIN+D PN+ +DYIHRIGRTGR +SG A +F + + Q +L+ L +A Q +P +
Sbjct: 635 VINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWM 694
Query: 153 QDLAN--SNPN 161
++ A SNPN
Sbjct: 695 KEAAGGTSNPN 705
Score = 97 (39.2 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 22 FRQKKEITVKGNNIPC-PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDM 80
F ++ +G + P + ++ P ++ ++++ G+ T IQ P+ G+D+
Sbjct: 279 FDASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDI 338
Query: 81 VGIAQTGSGKTLAVI 95
+ AQTGSGKT A +
Sbjct: 339 LACAQTGSGKTAAFL 353
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 158 (60.7 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD P+ E+Y+HRIGRTGR + G A +FF N K+L+ +L EA Q +P L+
Sbjct: 506 VINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSWLE 565
Query: 154 DLANSNP---NSKG 164
+A + NS+G
Sbjct: 566 SMAYEHHYKGNSRG 579
Score = 88 (36.0 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 22 FRQKKEITVK--GNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRD 79
F + +I V+ GNN P + ++ ++ +++ + PT +Q PI RD
Sbjct: 153 FEKYDDIPVEATGNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRD 212
Query: 80 MVGIAQTGSGKTLAVI 95
++ AQTGSG T A +
Sbjct: 213 LMACAQTGSGCTAAFL 228
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 152 (58.6 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P++ +DYIHRIGRTGR +SG A T F + EL+ VL +A Q +P +Q
Sbjct: 678 VINYDMPDNIDDYIHRIGRTGRVGNSGRA-TSFISEDCSLLSELVGVLADAQQIVPDWMQ 736
Query: 154 DLANSNPNSKG 164
A N + G
Sbjct: 737 GAAGGNYGASG 747
Score = 95 (38.5 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 16 ESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIAL 75
++EV+ +K + +K PC T E + +++ G+ + T IQ P+
Sbjct: 323 DAEVKLTSSEKTVGIK----PCKT--FAEANLTETMQKNVAHAGYSKTTPIQQYALPLVH 376
Query: 76 SGRDMVGIAQTGSGKTLAVI 95
G D++ AQTGSGKT A +
Sbjct: 377 QGYDIMACAQTGSGKTAAFL 396
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 152 (58.6 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P++ +DYIHRIGRTGR +SG A T F + EL+ VL +A Q +P +Q
Sbjct: 678 VINYDMPDNIDDYIHRIGRTGRVGNSGRA-TSFISEDCSLLSELVGVLADAQQIVPDWMQ 736
Query: 154 DLANSNPNSKG 164
A N + G
Sbjct: 737 GAAGGNYGASG 747
Score = 95 (38.5 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 16 ESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIAL 75
++EV+ +K + +K PC T E + +++ G+ + T IQ P+
Sbjct: 323 DAEVKLTSSEKTVGIK----PCKT--FAEANLTETMQKNVAHAGYSKTTPIQQYALPLVH 376
Query: 76 SGRDMVGIAQTGSGKTLAVI 95
G D++ AQTGSGKT A +
Sbjct: 377 QGYDIMACAQTGSGKTAAFL 396
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 121 (47.7 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+++LQ ++ GFEE T IQA+ P AL G+D++G AQTG+GKT A
Sbjct: 11 DSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAA 55
Score = 120 (47.3 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
Identities = 25/50 (50%), Positives = 27/50 (54%)
Query: 88 SGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
SG T V NFD P E Y+HRIGRTGR G A F TP Q K +
Sbjct: 307 SGVT-HVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 121 (47.7 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+++LQ ++ GFEE T IQA+ P AL G+D++G AQTG+GKT A
Sbjct: 11 DSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAA 55
Score = 120 (47.3 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 25/50 (50%), Positives = 27/50 (54%)
Query: 88 SGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
SG T V NFD P E Y+HRIGRTGR G A F TP Q K +
Sbjct: 307 SGVT-HVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 121 (47.7 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+++LQ ++ GFEE T IQA+ P AL G+D++G AQTG+GKT A
Sbjct: 11 DSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAA 55
Score = 120 (47.3 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 25/50 (50%), Positives = 27/50 (54%)
Query: 88 SGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
SG T V NFD P E Y+HRIGRTGR G A F TP Q K +
Sbjct: 307 SGVT-HVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 121 (47.7 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+++LQ ++ GFEE T IQA+ P AL G+D++G AQTG+GKT A
Sbjct: 11 DSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAA 55
Score = 120 (47.3 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 25/50 (50%), Positives = 27/50 (54%)
Query: 88 SGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
SG T V NFD P E Y+HRIGRTGR G A F TP Q K +
Sbjct: 307 SGVT-HVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 121 (47.7 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+++LQ ++ GFEE T IQA+ P AL G+D++G AQTG+GKT A
Sbjct: 11 DSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAA 55
Score = 120 (47.3 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 25/50 (50%), Positives = 27/50 (54%)
Query: 88 SGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
SG T V NFD P E Y+HRIGRTGR G A F TP Q K +
Sbjct: 307 SGVT-HVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 121 (47.7 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+++LQ ++ GFEE T IQA+ P AL G+D++G AQTG+GKT A
Sbjct: 11 DSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAA 55
Score = 120 (47.3 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 25/50 (50%), Positives = 27/50 (54%)
Query: 88 SGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
SG T V NFD P E Y+HRIGRTGR G A F TP Q K +
Sbjct: 307 SGVT-HVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 121 (47.7 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+++LQ ++ GFEE T IQA+ P AL G+D++G AQTG+GKT A
Sbjct: 11 DSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAA 55
Score = 120 (47.3 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 25/50 (50%), Positives = 27/50 (54%)
Query: 88 SGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
SG T V NFD P E Y+HRIGRTGR G A F TP Q K +
Sbjct: 307 SGVT-HVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 128 (50.1 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 15 SESEVEAFRQKKEITVKGNN--IPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWP 72
S + + R+K +I V+G +P P T P +L +L+ G++ PT IQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 73 IALSGRDMVGIAQTGSGKTLAVI 95
AL+G+ ++ A TGSGKT + +
Sbjct: 143 AALTGKSLLASADTGSGKTASFL 165
Score = 112 (44.5 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VI FD P++ ++YIH IGR R GTA F ++ +L+A L + IP +L
Sbjct: 430 VIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKELI 489
Query: 154 DLANSNPNSK 163
+L + ++K
Sbjct: 490 NLTSREMHNK 499
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 141 (54.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 89 GKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPI 148
G VINFD P Y+HRIGRTGR G A +FF N EL+ ++ ++Q I
Sbjct: 571 GNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASNQDI 630
Query: 149 PPQLQDLANSNPNSKG 164
P + + ++ SKG
Sbjct: 631 PDWFEKMVHNLRMSKG 646
Score = 101 (40.6 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 27 EITVKGNNIPC-PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQ 85
+I+++ + C P + + +L ++K + +PT +Q PI L RD++ AQ
Sbjct: 233 DISIETSEHICAPLNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQ 292
Query: 86 TGSGKTLAVI 95
TGSGKT A +
Sbjct: 293 TGSGKTAAFL 302
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 127 (49.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+ T+ +LQ LK G PTAIQ Q PIAL+G+D++ ++TGSGKTLA +
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFL 56
Score = 109 (43.4 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
VINFD P +E+Y+HRIGRTGR + G A + P + K++
Sbjct: 318 VINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKV 361
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 127 (49.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 41 ELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+ T+ +LQ LK G PTAIQ Q PIAL+G+D++ ++TGSGKTLA +
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFL 56
Score = 109 (43.4 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
VINFD P +E+Y+HRIGRTGR + G A + P + K++
Sbjct: 318 VINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKV 361
>FB|FBgn0029880 [details] [associations]
symbol:CG14443 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:AE014298 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:NP_572330.2 ProteinModelPortal:Q9W3Y5 SMR:Q9W3Y5
IntAct:Q9W3Y5 MINT:MINT-1614529 PRIDE:Q9W3Y5 GeneID:31595
KEGG:dme:Dmel_CG14443 UCSC:CG14443-RA FlyBase:FBgn0029880
OrthoDB:EOG4DFN5J PhylomeDB:Q9W3Y5 GenomeRNAi:31595 NextBio:774378
Bgee:Q9W3Y5 GermOnline:CG14443 Uniprot:Q9W3Y5
Length = 438
Score = 134 (52.2 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 22 FRQKKEITVKG---NNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGR 78
+R++ IT+ N+P P F +LQ L+ QG++ PT IQAQ W IA G+
Sbjct: 11 YRKRHNITLTSWNMRNLPEPVLSFERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGK 70
Query: 79 DMVGIAQTGSGKTLAVI 95
++V I+ G+GKTL +
Sbjct: 71 NIVMISGKGTGKTLGYL 87
Score = 100 (40.3 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGT---AYTFFTPNNGKQAKELIAVLTEASQPIPP 150
VIN+D+P++ + Y+ R+ RTG C S +FFT N K E++ L Q I P
Sbjct: 352 VINYDFPDNIDKYVQRMSRTG-CLSYNRNCEVISFFTMANYKLVTEVVDFLKICKQEIGP 410
Query: 151 QLQDLA 156
L LA
Sbjct: 411 HLLQLA 416
>FB|FBgn0036754 [details] [associations]
symbol:CG5589 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 KO:K14779 OMA:NVMKQSG
RefSeq:NP_649009.1 ProteinModelPortal:Q9VVK8 SMR:Q9VVK8
STRING:Q9VVK8 PRIDE:Q9VVK8 EnsemblMetazoa:FBtr0075170 GeneID:39979
KEGG:dme:Dmel_CG5589 UCSC:CG5589-RA FlyBase:FBgn0036754
InParanoid:Q9VVK8 OrthoDB:EOG4QBZMN PhylomeDB:Q9VVK8
GenomeRNAi:39979 NextBio:816380 Bgee:Q9VVK8 Uniprot:Q9VVK8
Length = 594
Score = 122 (48.0 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149
VIN+D+P ++ YIHRIGRTGR G A TFFT + + + ++ + +P
Sbjct: 438 VINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSNLRGIALIIKNSGGTVP 493
Score = 115 (45.5 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 32/93 (34%), Positives = 46/93 (49%)
Query: 8 QERAARLSESEVEAFRQKKEITVKGNNIPCPTQE---LTEG--CFPNAVLQHLKGQGFEE 62
+E + + E R++ I V G N+P P LT P + Q+L + F+
Sbjct: 83 KELEIQKAAEEANETRKQYGIRVLGKNVPPPVDSFGTLTRDFKMLPR-LQQNLLSRNFDH 141
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
PT IQ Q P+ L R ++ A TGSGKTLA +
Sbjct: 142 PTPIQMQALPVLLQRRALMACAPTGSGKTLAFL 174
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 143 (55.4 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P++ E+YIHRIGR+GR G A F T N+ +Q KE+ + T + +P +
Sbjct: 340 VINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIESYYTTQIEEMPESIA 399
Query: 154 DL 155
DL
Sbjct: 400 DL 401
Score = 86 (35.3 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
+L+ + G GFE+P+AIQ + +G+D++ AQ+G+GKT
Sbjct: 40 LLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKT 80
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 123 (48.4 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
F AV+ ++ G++EPT IQAQ P L G D++G+AQTG+GKT A
Sbjct: 8 FAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAA 54
Score = 111 (44.1 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146
VIN+D P++ EDY HRIGRTGR +G A + T +G +++ ++ Q
Sbjct: 311 VINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDIQKLINSPIQ 363
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 121 (47.7 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 28/68 (41%), Positives = 34/68 (50%)
Query: 88 SGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQP 147
SG T V NFD P E Y+HRIGRTGR +G A TF TP Q + +
Sbjct: 307 SGVT-HVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMER 365
Query: 148 I-PPQLQD 154
+ PP L +
Sbjct: 366 MKPPTLDE 373
Score = 109 (43.4 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
V++ ++ GFEE T IQA+ P++L +D++G AQTG+GKT A
Sbjct: 13 VMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAA 55
>WB|WBGene00011032 [details] [associations]
symbol:R05D11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG EMBL:Z75546 PIR:T23922 RefSeq:NP_492326.1
ProteinModelPortal:Q21736 SMR:Q21736 STRING:Q21736 PaxDb:Q21736
EnsemblMetazoa:R05D11.4.1 EnsemblMetazoa:R05D11.4.2 GeneID:172651
KEGG:cel:CELE_R05D11.4 UCSC:R05D11.4 CTD:172651 WormBase:R05D11.4
InParanoid:Q21736 NextBio:876429 Uniprot:Q21736
Length = 581
Score = 138 (53.6 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P S YIHR+GRTGR SG A T+FT + K K + V+ ++ +P L
Sbjct: 447 VINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFTDADMKYIKSIATVIRQSGFDVPEYLM 506
Query: 154 DLANSNPNSK 163
++ + + K
Sbjct: 507 EMKKVSRDRK 516
Score = 90 (36.7 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 19 VEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGR 78
++ R+ I G+++P ++ ++L L +P+ IQ Q P R
Sbjct: 105 LDDIRRTNRIFTWGDHLPNIILRFSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERR 164
Query: 79 DMVGIAQTGSGKTLA 93
+++ A TGSGKTLA
Sbjct: 165 NVLASAPTGSGKTLA 179
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 147 (56.8 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149
VINFD P++ +DYIHRIGRTGR + G A +F +N K+L+A L E +Q IP
Sbjct: 717 VINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNEDNKNIFKDLLATLEECNQQIP 772
Score = 86 (35.3 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT----LAVIN 96
+L ++K +++ T IQ I ++ D++G+AQTGSGKT L +IN
Sbjct: 373 LLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIIN 422
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 147 (56.8 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149
VINFD P++ +DYIHRIGRTGR + G A +F +N K+L+A L E +Q IP
Sbjct: 717 VINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNEDNKNIFKDLLATLEECNQQIP 772
Score = 86 (35.3 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT----LAVIN 96
+L ++K +++ T IQ I ++ D++G+AQTGSGKT L +IN
Sbjct: 373 LLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIIN 422
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 142 (55.0 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P++ +DYIHRIGRTGR ++G A T F + EL+ VL++A Q +P +Q
Sbjct: 889 VINYDMPDNIDDYIHRIGRTGRVGNAGRA-TSFISEDCNLLSELVRVLSDADQLVPEWMQ 947
Query: 154 DLANSN 159
+ N
Sbjct: 948 GASGGN 953
Score = 90 (36.7 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 16 ESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIAL 75
++EV+ KK + VK C T +E + +++ G+ + T IQ P+
Sbjct: 534 DAEVKITSDKKPVGVK----TCKT--FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIH 587
Query: 76 SGRDMVGIAQTGSGKTLAVI 95
G D++ AQTGSGKT A +
Sbjct: 588 QGHDIMACAQTGSGKTAAFL 607
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 142 (55.0 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P++ +DYIHRIGRTGR ++G A T F + EL+ VL++A Q +P +Q
Sbjct: 889 VINYDMPDNIDDYIHRIGRTGRVGNAGRA-TSFISEDCNLLSELVRVLSDADQLVPEWMQ 947
Query: 154 DLANSN 159
+ N
Sbjct: 948 GASGGN 953
Score = 90 (36.7 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 16 ESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIAL 75
++EV+ KK + VK C T +E + +++ G+ + T IQ P+
Sbjct: 534 DAEVKITSDKKPVGVK----TCKT--FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIH 587
Query: 76 SGRDMVGIAQTGSGKTLAVI 95
G D++ AQTGSGKT A +
Sbjct: 588 QGHDIMACAQTGSGKTAAFL 607
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 121 (47.7 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 28/71 (39%), Positives = 37/71 (52%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP-PQL 152
VIN+ SE ++HRIGRTGR S+G AY+ F+ + L L P P P L
Sbjct: 321 VINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYKVGLLEDYLEAVITPEPLPSL 380
Query: 153 QDLANSNPNSK 163
L+N P +K
Sbjct: 381 AVLSNERPQAK 391
Score = 101 (40.6 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
++++L G+E+ T IQA+ P L G+D++G A+TGSGKT A
Sbjct: 21 LVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAA 63
Score = 36 (17.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTE 44
A L++ EV+ FR + + CPT+EL +
Sbjct: 67 ALLNKLEVKKFRIQSMVI-------CPTRELAD 92
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 121 (47.7 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 28/71 (39%), Positives = 37/71 (52%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP-PQL 152
VIN+ SE ++HRIGRTGR S+G AY+ F+ + L L P P P L
Sbjct: 321 VINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYKVGLLEDYLEAVITPEPLPSL 380
Query: 153 QDLANSNPNSK 163
L+N P +K
Sbjct: 381 AVLSNERPQAK 391
Score = 101 (40.6 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
++++L G+E+ T IQA+ P L G+D++G A+TGSGKT A
Sbjct: 21 LVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAA 63
Score = 36 (17.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTE 44
A L++ EV+ FR + + CPT+EL +
Sbjct: 67 ALLNKLEVKKFRIQSMVI-------CPTRELAD 92
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 119 (46.9 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 24/41 (58%), Positives = 26/41 (63%)
Query: 88 SGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTP 128
SG T V NFD P E Y+HRIGRTGR +G A TF TP
Sbjct: 308 SGVT-HVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP 347
Score = 112 (44.5 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 55 LKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+K GFEE T IQAQ P+ L+ +D++G AQTG+GKT A
Sbjct: 18 IKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAA 56
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 119 (46.9 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 24/41 (58%), Positives = 26/41 (63%)
Query: 88 SGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTP 128
SG T V NFD P E Y+HRIGRTGR +G A TF TP
Sbjct: 308 SGVT-HVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP 347
Score = 112 (44.5 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+++ + GFEE T IQAQ P+ LS +D++G AQTG+GKT A
Sbjct: 14 LMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAA 56
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 119 (46.9 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD P S+DYIHR+GRT R SG + TF T + + + + A++ + P Q +
Sbjct: 390 VINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEALIGKKLPAFPTQEE 449
Query: 154 DL 155
++
Sbjct: 450 EV 451
Score = 111 (44.1 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
G+++PT IQ + P+AL GRD++G+A+TGSGKT
Sbjct: 98 GWKKPTKIQIEAIPVALQGRDVIGLAETGSGKT 130
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 121 (47.7 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 35/88 (39%), Positives = 49/88 (55%)
Query: 8 QERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQ 67
+E AA++ E A + K T KGN Q ++ +L+ L GF +PT IQ
Sbjct: 231 EEEAAKMKE--FFAADEPKSDTNKGN---ASFQSMS---LSRPILRGLTSVGFAKPTPIQ 282
Query: 68 AQGWPIALSGRDMVGIAQTGSGKTLAVI 95
++ PIAL G+D+VG A TGSGKT A +
Sbjct: 283 SKTIPIALMGKDVVGGAVTGSGKTAAFV 310
Score = 104 (41.7 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN++ P S E Y+HR+GRT R SGTA T + K K + I ++
Sbjct: 572 VINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKAQGAKISSRII 631
Query: 154 DLANSN 159
D A+++
Sbjct: 632 DAADAD 637
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 117 (46.2 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+A++ ++ GF EPT IQ Q P A++G D++ ++TGSGKTLA I
Sbjct: 10 SALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFI 56
Score = 116 (45.9 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143
VINFD P +E+++HRIGRTGR + G A + PN+ K + A L +
Sbjct: 318 VINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKNVEAFLQQ 367
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 117 (46.2 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+A++ ++ GF EPT IQ Q P A++G D++ ++TGSGKTLA I
Sbjct: 10 SALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFI 56
Score = 116 (45.9 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143
VINFD P +E+++HRIGRTGR + G A + PN+ K + A L +
Sbjct: 318 VINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKNVEAFLQQ 367
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 121 (47.7 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141
VIN+D P E Y+HR GRTGR +SG A TF TP + +E+ A +
Sbjct: 314 VINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYI 361
Score = 98 (39.6 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
V + L G G+E PT +Q + P+AL +D+V +QTGSGKT
Sbjct: 15 VRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKT 55
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 121 (47.7 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141
VIN+D P E Y+HR GRTGR +SG A TF TP + +E+ A +
Sbjct: 314 VINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYI 361
Score = 98 (39.6 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
V + L G G+E PT +Q + P+AL +D+V +QTGSGKT
Sbjct: 15 VRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKT 55
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 117 (46.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 24/41 (58%), Positives = 31/41 (75%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
VL+ ++ G+E PT IQA P AL GRD++GIAQTG+GKT
Sbjct: 13 VLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKT 53
Score = 114 (45.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 25/54 (46%), Positives = 29/54 (53%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQP 147
V NFD P EDY+HRIGRTGR G A T P + K A + I L + P
Sbjct: 324 VFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEK-ALDAIEKLIQKDIP 376
>UNIPROTKB|D6RJA6 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0005730
EMBL:CH471062 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:Hs.406549 HGNC:HGNC:18681 ChiTaRS:DDX46 EMBL:AC006077
EMBL:AC010301 IPI:IPI00967303 SMR:D6RJA6 Ensembl:ENST00000507392
Uniprot:D6RJA6
Length = 471
Score = 188 (71.2 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 12 ARLSESEVEAFRQKKE-ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQG 70
A++S+ EV FR + E ITVKG P P + + +L LK G+E+PT IQ Q
Sbjct: 295 AKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 354
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVI 95
P +SGRD++GIA+TGSGKT+A +
Sbjct: 355 IPAIMSGRDLIGIAKTGSGKTIAFL 379
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 116 (45.9 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
Identities = 30/81 (37%), Positives = 41/81 (50%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAV----LTEASQPI- 148
V+N+D P+ +E Y+HRIGRTGR SG A F +P K + LTEA P
Sbjct: 322 VLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTLTEAQLPTV 381
Query: 149 ----PPQLQDLANSNPNSKGG 165
++ A+S N+ GG
Sbjct: 382 EDVNTQRVAKFADSITNALGG 402
Score = 113 (44.8 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
VL+ + G+E PTAIQA P ++G D+VG+AQTG+GKT A
Sbjct: 24 VLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAA 66
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 117 (46.2 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146
VINFD P +E+Y+HR+GRTGR + G A + P + + K + A L + Q
Sbjct: 322 VINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQQEIQ 374
Score = 107 (42.7 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
N +L++L F++ T IQ Q P+ ++GRD++ ++TGSGKTLA +
Sbjct: 14 NRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFV 60
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 117 (46.2 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQ 146
VINFD P +E+Y+HR+GRTGR + G A + P + + K + A L + Q
Sbjct: 322 VINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQQEIQ 374
Score = 107 (42.7 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
N +L++L F++ T IQ Q P+ ++GRD++ ++TGSGKTLA +
Sbjct: 14 NRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFV 60
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 116 (45.9 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 35/86 (40%), Positives = 46/86 (53%)
Query: 16 ESEVEAF----RQKK--EITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQ 69
E E+E F QKK E K N+ T E + G P ++ GF +P IQ +
Sbjct: 94 EKEIEEFINNTNQKKSEEEEKKYENV---TFE-SLGVHPQ-IIDACNKLGFNKPKEIQRE 148
Query: 70 GWPIALSGRDMVGIAQTGSGKTLAVI 95
P AL GRD++G+AQTGSGKT A +
Sbjct: 149 SIPWALKGRDIIGLAQTGSGKTAAFV 174
Score = 111 (44.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
VIN+D P +S++Y+HR+GRT R +SG A T T + + + + VL + P Q
Sbjct: 430 VINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRIEFVLKKKLDSFPCQ 487
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 120 (47.3 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ-- 151
V NF P EDY+HRIGRTGR +G +YT TP + K ++ ++ + P+
Sbjct: 320 VFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFVVKMIKKDVPEFMPEGL 379
Query: 152 LQDLANSNPNSK 163
L++L P K
Sbjct: 380 LEELETLPPEEK 391
Score = 95 (38.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+L+ + G+ PT IQ + P L G D+ G+AQTG+GKT A +
Sbjct: 15 ILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFV 59
Score = 35 (17.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 26 KEITVKGNNIPCPTQ 40
K +T G IP P Q
Sbjct: 17 KAVTESGYTIPTPIQ 31
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 119 (46.9 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L L G+ PT IQ Q P+ + GRD+VG+AQTG+GKTLA
Sbjct: 18 ILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLA 60
Score = 97 (39.2 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTF 125
VIN+D P+ E ++HRIGRT R +SG A +F
Sbjct: 322 VINYDLPDVPEQFVHRIGRTARAGNSGVAISF 353
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 123 (48.4 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 44 EGCFPN-----AVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+G FP+ VL ++K +GF +PT IQ + P+ L RD+VG+A+TGSGKT A I
Sbjct: 136 KGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFI 192
Score = 92 (37.4 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129
VIN+ P SS+ ++HR+GRT R + G AY+ N
Sbjct: 504 VINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAEN 539
Score = 42 (19.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 125 FFTPNNGKQAKELIAVLTEASQ-PIPP--QLQDLANSN 159
F + N + L+ +L E + P+ QLQ L NSN
Sbjct: 356 FLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSN 393
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 115 (45.5 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127
V+NFD P S+DYIHR+GRT R SG A TF T
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Score = 108 (43.1 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
G+ +PT IQ + P+AL GRD++G+A+TGSGKT
Sbjct: 43 GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKT 75
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 115 (45.5 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127
V+NFD P S+DYIHR+GRT R SG A TF T
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Score = 108 (43.1 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
G+ +PT IQ + P+AL GRD++G+A+TGSGKT
Sbjct: 43 GWAKPTKIQIEAIPLALQGRDIIGLAETGSGKT 75
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 115 (45.5 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127
V+NFD P S+DYIHR+GRT R SG A TF T
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Score = 108 (43.1 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
G+ +PT IQ + P+AL GRD++G+A+TGSGKT
Sbjct: 43 GWAKPTKIQIEAIPLALQGRDIIGLAETGSGKT 75
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 115 (45.5 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127
V+NFD P S+DYIHR+GRT R SG A TF T
Sbjct: 337 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 370
Score = 108 (43.1 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
G+ +PT IQ + P+AL GRD++G+A+TGSGKT
Sbjct: 45 GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKT 77
>POMBASE|SPBC776.09 [details] [associations]
symbol:ste13 "ATP-dependent RNA helicase Ste13"
species:4896 "Schizosaccharomyces pombe" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0030996 "cell cycle arrest in response to
nitrogen starvation" evidence=IMP] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IMP] [GO:0051028
"mRNA transport" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC776.09
GO:GO:0005524 GO:GO:0006417 EMBL:CU329671 GO:GO:0006397
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0031142 eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000290
OrthoDB:EOG4QJVWF EMBL:D29795 PIR:S46654 RefSeq:NP_596324.1
ProteinModelPortal:Q09181 SMR:Q09181 STRING:Q09181 PRIDE:Q09181
EnsemblFungi:SPBC776.09.1 GeneID:2541216 KEGG:spo:SPBC776.09
NextBio:20802328 GO:GO:0030996 Uniprot:Q09181
Length = 485
Score = 117 (46.2 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD+P ++E Y+HRIGR+GR G A +F + + + L QPIPP +
Sbjct: 353 VINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELGTEIQPIPPSID 412
Query: 154 DLANSNPN 161
PN
Sbjct: 413 PSLYVFPN 420
Score = 103 (41.3 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
GFE P+ IQ + PIALSGRD++ A+ G+GKT A +
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFV 99
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 115 (45.5 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127
V+NFD P S+DYIHR+GRT R SG A TF T
Sbjct: 361 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 394
Score = 108 (43.1 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
G+ +PT IQ + P+AL GRD++G+A+TGSGKT
Sbjct: 69 GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKT 101
>UNIPROTKB|B7Z5N6 [details] [associations]
symbol:DDX59 "cDNA FLJ56549, highly similar to Homo sapiens
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (DDX59), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
HOGENOM:HOG000006599 HOVERGEN:HBG106120 OrthoDB:EOG4K9BBZ
EMBL:AK299219 IPI:IPI00514037 SMR:B7Z5N6 Ensembl:ENST00000367348
UCSC:uc010ppl.1 Uniprot:B7Z5N6
Length = 567
Score = 146 (56.5 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQH-LKGQGFEEPTAIQAQGWP 72
L E ++E +Q+ I V+G + P + E C VL H LK G+E PT IQ Q P
Sbjct: 177 LQEDQIENLKQQLGILVQGQEVTRPIIDF-EHCSLPEVLNHNLKKSGYEVPTPIQMQMIP 235
Query: 73 IALSGRDMVGIAQTGSGKTLAVI 95
+ L GRD++ A TGSGKT A +
Sbjct: 236 VGLLGRDILASADTGSGKTAAFL 258
Score = 60 (26.2 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 94 VINFDYPNSSEDYIHRI 110
V+NFD P+S ++Y+H++
Sbjct: 517 VVNFDMPSSMDEYVHQL 533
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 116 (45.9 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 38 PTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
PT+ T+ A+L+ ++ +G+E P+ IQAQ P +SGRD++ AQTG+GKT
Sbjct: 5 PTK-FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKT 57
Score = 104 (41.7 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTA 122
V+NFD PN EDY+HRIGRT R ++G A
Sbjct: 322 VVNFDLPNVPEDYVHRIGRTARAGNTGQA 350
Score = 35 (17.4 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 7 TQERAARLSESEVEAF 22
T+E AA++SES +E +
Sbjct: 89 TRELAAQISES-IEVY 103
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 113 (44.8 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127
VINFD P S+DYIHR+GRT R SG + TF T
Sbjct: 336 VINFDIPTHSKDYIHRVGRTARAGRSGKSITFVT 369
Score = 109 (43.4 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
G++ PT IQ + P+AL GRD++G+A+TGSGKT
Sbjct: 44 GWKVPTKIQVEAIPVALQGRDIIGLAETGSGKT 76
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 113 (44.8 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 29/71 (40%), Positives = 37/71 (52%)
Query: 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLT-EASQPIPPQ 151
AV N+ +E +IHRIGRTGR S G AYTF+ +G + L L E + P
Sbjct: 311 AVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLDREITSESLPS 370
Query: 152 LQDLANSNPNS 162
L L S PN+
Sbjct: 371 LS-LLGSAPNA 380
Score = 108 (43.1 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L++L G+ E T IQAQ P L+G D++G +TGSGKT A
Sbjct: 12 LLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAA 54
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 113 (44.8 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 29/71 (40%), Positives = 37/71 (52%)
Query: 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLT-EASQPIPPQ 151
AV N+ +E +IHRIGRTGR S G AYTF+ +G + L L E + P
Sbjct: 311 AVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLDREITSESLPS 370
Query: 152 LQDLANSNPNS 162
L L S PN+
Sbjct: 371 LS-LLGSAPNA 380
Score = 108 (43.1 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L++L G+ E T IQAQ P L+G D++G +TGSGKT A
Sbjct: 12 LLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAA 54
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 181 (68.8 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 37/92 (40%), Positives = 56/92 (60%)
Query: 4 HAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEP 63
H + +E + +S+ + FR+ I++KG +P P + E FP+ V Q +K G+ EP
Sbjct: 266 HWRMKE-LSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEP 324
Query: 64 TAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
T IQ Q PI L RD++G+A+TGSGKT A +
Sbjct: 325 TPIQRQAIPIGLQNRDVIGVAETGSGKTAAFL 356
Score = 146 (56.5 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 48/127 (37%), Positives = 63/127 (49%)
Query: 42 LTEGCFPNAVLQHLKGQGFEEPTAIQA--QGWPIALSGRDMVGIAQTGSGKTLAVINFDY 99
LT+ F VL KGQ E A+QA +G L D+ G +L V+N+D
Sbjct: 593 LTKLGFKPTVLHGGKGQDQRE-YALQALKEGTSDILVATDVAGRGIDVKDVSL-VLNYDM 650
Query: 100 PNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS-QPIPPQLQDLANS 158
S EDY HRIGRTGR G A TF TP++ +L VL E+ PP+L + +
Sbjct: 651 AKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQVLVESPVSSCPPELAN--HP 708
Query: 159 NPNSKGG 165
+ SK G
Sbjct: 709 DAQSKPG 715
>DICTYBASE|DDB_G0280407 [details] [associations]
symbol:ddx56 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS]
[GO:0000027 "ribosomal large subunit assembly" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0280407 GO:GO:0005524 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000036
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0000027 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HSSP:P10081 RefSeq:XP_641158.1
STRING:Q54VF1 EnsemblProtists:DDB0234216 GeneID:8622538
KEGG:ddi:DDB_G0280407 OMA:CARETEM ProtClustDB:CLSZ2730700
Uniprot:Q54VF1
Length = 685
Score = 113 (44.8 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPP 150
V+NFD+P + ++YIHRIGRT R + G A +F T +N + K++ +A + P
Sbjct: 439 VVNFDFPRTIKNYIHRIGRTARGTNKGIALSFVTYHNEELLKKVSKTRGDAGYNLKP 495
Score = 112 (44.5 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 49 NAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
N +L+ LK GF+ P+ +Q++ P++L G+D++ A+TGSGKT A
Sbjct: 32 NRILRALKKMGFQNPSLVQSKSIPLSLQGKDILAKARTGSGKTAA 76
Score = 34 (17.0 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 78 RDMVGIAQTGSGKTL 92
+ +V + Q G+ KTL
Sbjct: 124 QQLVSVVQLGNDKTL 138
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 111 (44.1 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 45 GCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
G P+ +L+ + QG+ EPT IQ Q P L GRD++ AQTG+GKT
Sbjct: 7 GLSPD-ILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKT 52
Score = 111 (44.1 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141
V+N++ PN EDY+HRIGRTGR A++G A + + K +++ +L
Sbjct: 317 VVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLL 364
Score = 35 (17.4 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 150 PQLQDLANSNPNSKG 164
P LQ L P++KG
Sbjct: 58 PLLQHLITRQPHAKG 72
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 119 (46.9 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
VIN + P +EDY+HRIGRTGR SG A +F +P + + E+ A++ E P+ Q
Sbjct: 313 VINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALIGE-KLPVTVQ 369
Score = 90 (36.7 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
G+++ T +Q Q P+AL G+D++ AQTG+GKT A
Sbjct: 20 GYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAA 54
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 119 (46.9 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
VIN + P +EDY+HRIGRTGR SG A +F +P + + E+ A++ E P+ Q
Sbjct: 313 VINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALIGE-KLPVTVQ 369
Score = 90 (36.7 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
G+++ T +Q Q P+AL G+D++ AQTG+GKT A
Sbjct: 20 GYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAA 54
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 113 (44.8 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 89 GKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAV 140
G+ VIN+D P +DYIHRIGRTGR +SG A + + +N +EL A+
Sbjct: 315 GELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDN---FRELCAI 363
Score = 105 (42.0 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+L + G+ +PTAIQ + P+ L+G+D++ AQTG+GKT + +
Sbjct: 12 ILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFV 56
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 180 (68.4 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 9 ERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQA 68
E + ++E E +RQ+ I V G ++ P + + F + ++ +K Q +E+PTAIQ
Sbjct: 197 ESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQC 256
Query: 69 QGWPIALSGRDMVGIAQTGSGKTLAVI 95
Q PI LSGRD++GIA+TGSGKT A +
Sbjct: 257 QALPIVLSGRDVIGIAKTGSGKTAAFV 283
Score = 141 (54.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 51/147 (34%), Positives = 68/147 (46%)
Query: 14 LSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQ-GWP 72
+ E +V F KK TV + I +LT F A L K Q T + + G
Sbjct: 471 IDEGDVLVFASKKA-TV--DEIEA---QLTLNSFKVAALHGDKDQASRMETLQKFKSGVH 524
Query: 73 IALSGRDMVGIAQTGSG-KTL-AVINFDYPNSSEDYIHRIGRTGRCAS-SGTAYTFFTPN 129
L D +A G K+L V+N+D + ++HRIGRTGR G AYT T
Sbjct: 525 HVLIATD---VAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQR 581
Query: 130 NGKQAKELIAVLTEASQPIPPQLQDLA 156
+ A EL+ L A Q +PP+L DLA
Sbjct: 582 EARFAGELVNSLVAAGQNVPPELTDLA 608
>UNIPROTKB|G5EHR3 [details] [associations]
symbol:MGCH7_ch7g509 "ATP-dependent RNA helicase DED1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
EMBL:CM001237 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 RefSeq:XP_003720990.1 ProteinModelPortal:G5EHR3
EnsemblFungi:MGG_02762T0 GeneID:2682767 KEGG:mgr:MGG_02762
Uniprot:G5EHR3
Length = 619
Score = 116 (45.9 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 94 VINFDYPNSS----EDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149
V+N+D P+ E+Y HRIGRTGR + G A +F+T + A L+ + E +Q IP
Sbjct: 459 VVNYDLPSMDHGGIEEYTHRIGRTGRIGNKGLATSFYTDRDEAIASVLVRTMLETNQEIP 518
Score = 103 (41.3 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 45 GCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
G P A+L+++ G++ PT IQA P G D++GIAQTGSGKT A +
Sbjct: 128 GLHP-AMLKNVDLCGYKVPTPIQAYCIPAIHKGHDVIGIAQTGSGKTAAFL 177
Score = 36 (17.7 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 35 IPCPTQELTEGCFPNA 50
I CPT+EL F A
Sbjct: 217 IVCPTRELAIQAFNEA 232
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 116 (45.9 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
V+NFD PN EDY+HRIGRTGR ++G A + + K K++
Sbjct: 315 VVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDI 358
Score = 101 (40.6 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 49 NAVLQH-LKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
+A LQ + QG++ P+ IQAQ P L+G+D++ AQTG+GKT
Sbjct: 9 SAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKT 52
>UNIPROTKB|I3LRT7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00620000087942 EMBL:CU929824
Ensembl:ENSSSCT00000031627 OMA:VGDERTM Uniprot:I3LRT7
Length = 290
Score = 170 (64.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 30/65 (46%), Positives = 48/65 (73%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD P++ ++Y+HRIGRTGRC ++G A +FF ++ A+ L+ VL++A Q +P L+
Sbjct: 179 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDESDSHLAQPLVKVLSDAQQDVPAWLE 238
Query: 154 DLANS 158
++A S
Sbjct: 239 EIAFS 243
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 116 (45.9 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L+ L G+E+P+ IQA+ P L+GRD++G+AQTGSGKT A
Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA 59
Score = 102 (41.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTF 125
V+N+D P SE Y+HRIGRTGR +G A F
Sbjct: 317 VVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 176 (67.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 34/89 (38%), Positives = 54/89 (60%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAI 66
T + +++ + F++ IT KG NIP P + EG + ++ + G+EEPT++
Sbjct: 135 TNKNLEEMTDRDWRIFKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYEEPTSV 194
Query: 67 QAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
Q P+AL RD+VG+A+TGSGKTLA +
Sbjct: 195 QRASIPLALKKRDVVGVAETGSGKTLAFL 223
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 176 (67.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 34/89 (38%), Positives = 54/89 (60%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAI 66
T + +++ + F++ IT KG NIP P + EG + ++ + G+EEPT++
Sbjct: 135 TNKNLEEMTDRDWRIFKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYEEPTSV 194
Query: 67 QAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
Q P+AL RD+VG+A+TGSGKTLA +
Sbjct: 195 QRASIPLALKKRDVVGVAETGSGKTLAFL 223
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 117 (46.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 50 AVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
++L+ L+ +GF PTAIQA P AL GRD++G A TG+GKT A +
Sbjct: 14 SLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYL 59
Score = 94 (38.1 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTA 122
V NFD P S + Y+HRIGRT R GTA
Sbjct: 320 VFNFDMPRSGDTYLHRIGRTARAGRKGTA 348
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 119 (46.9 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141
VINF+ P +EDYIHRIGRTGR S+G A T F+ + +E+ +L
Sbjct: 317 VINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLL 364
Score = 85 (35.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
G+++PT IQ + P L+ +D++ AQTG+GKT A
Sbjct: 20 GYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAA 54
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 119 (46.9 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141
VINF+ P +EDYIHRIGRTGR S+G A T F+ + +E+ +L
Sbjct: 317 VINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLL 364
Score = 85 (35.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 59 GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
G+++PT IQ + P L+ +D++ AQTG+GKT A
Sbjct: 20 GYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAA 54
>TAIR|locus:2116920 [details] [associations]
symbol:AT4G34910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006606
"protein import into nucleus" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161586
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AL079347
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT EMBL:BT002816
EMBL:BT004442 EMBL:AJ010467 IPI:IPI00520936 PIR:T10237 PIR:T51745
RefSeq:NP_195217.1 UniGene:At.24924 ProteinModelPortal:Q9SW44
SMR:Q9SW44 STRING:Q9SW44 PaxDb:Q9SW44 PRIDE:Q9SW44
EnsemblPlants:AT4G34910.1 GeneID:829643 KEGG:ath:AT4G34910
KEGG:dosa:Os03t0728800-01 GeneFarm:933 TAIR:At4g34910
InParanoid:Q9SW44 PhylomeDB:Q9SW44 ProtClustDB:CLSN2685920
Genevestigator:Q9SW44 GermOnline:AT4G34910 Uniprot:Q9SW44
Length = 626
Score = 112 (44.5 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 90 KTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129
K VINFD P S YIHRIGRTGR SSG++ + +P+
Sbjct: 404 KVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPD 443
Score = 108 (43.1 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 4 HAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEP 63
+++ + + E E + +++E K P +EL G + +++ L +G E+P
Sbjct: 13 NSEVVDEVEKAEEVEEQRNDREQEEEQKEEEAPKSFEEL--G-LDSRLIRALTKKGIEKP 69
Query: 64 TAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
T IQ P L G+D+V A+TGSGKTLA +
Sbjct: 70 TLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 110 (43.8 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL- 152
VINFD+P +E Y+HRIGR+GR G A T ++ K + L +PIP +
Sbjct: 405 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSID 464
Query: 153 QDLANSNPNSKGG 165
++L + +S+ G
Sbjct: 465 KNLYVAEYHSESG 477
Score = 107 (42.7 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 26 KEITVKGNNIPCPT-QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIA 84
K++ +K +++ E + C +L + G+E+P+ IQ + PIALSGRD++ A
Sbjct: 80 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARA 139
Query: 85 QTGSGKTLAVI 95
+ G+GK+ A +
Sbjct: 140 KNGTGKSGAYL 150
>DICTYBASE|DDB_G0292010 [details] [associations]
symbol:DDB_G0292010 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292010 GO:GO:0005524
EMBL:AAFI02000187 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
ProtClustDB:CLSZ2846571 RefSeq:XP_629765.1
ProteinModelPortal:Q54DV7 EnsemblProtists:DDB0184159 GeneID:8628441
KEGG:ddi:DDB_G0292010 InParanoid:Q54DV7 OMA:VESSCKP Uniprot:Q54DV7
Length = 777
Score = 164 (62.8 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 37/86 (43%), Positives = 49/86 (56%)
Query: 75 LSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT--PNNGK 132
L D++G G VIN+D+P+S E Y+HR+GRTGR + G A T FT P N
Sbjct: 636 LVATDILGRGIHIGGNLRFVINYDFPSSLEQYVHRVGRTGRQGNKGHALTLFTDTPQNTP 695
Query: 133 QAKELIAVLTEASQPIPPQLQDLANS 158
A+ LI +L E Q I P L LA++
Sbjct: 696 MARGLIKILEECKQQISPDLIKLADN 721
Score = 111 (44.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSE 104
PT +Q+Q WP LSG+D++ IAQTGSGKTL + PN E
Sbjct: 312 PTPVQSQCWPGILSGQDILSIAQTGSGKTLGYLLPAIPNILE 353
Score = 35 (17.4 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEI 28
N+ K Q +LS+ E E +Q+K +
Sbjct: 206 NNNKNQ---TKLSKKEKERIKQEKRL 228
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 112 (44.5 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 40 QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVIN--F 97
Q+ ++ V++ L+ +GF T IQA P+ L+GRD+ G AQTG+GKT+A + F
Sbjct: 9 QKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTF 68
Query: 98 DY 99
Y
Sbjct: 69 HY 70
Score = 102 (41.0 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIP 149
V N+D P+ EDY+HRIGRTGR +SG + + + A L A+ T IP
Sbjct: 328 VFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE---EYALNLPAIETYIGHSIP 380
>UNIPROTKB|J3QLG9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005516
"calmodulin binding" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0045069 "regulation of viral genome replication" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0003676 GO:GO:0008026 EMBL:AC009994 HGNC:HGNC:2746
ChiTaRS:DDX5 Ensembl:ENST00000578190 Uniprot:J3QLG9
Length = 46
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 30/38 (78%), Positives = 34/38 (89%)
Query: 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
Q F EPTAIQAQGWP+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 7 QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 44
>UNIPROTKB|J3QR62 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005516
"calmodulin binding" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0045069 "regulation of viral genome replication" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0003676 GO:GO:0008026 EMBL:AC009994 HGNC:HGNC:2746
ChiTaRS:DDX5 Ensembl:ENST00000581806 Uniprot:J3QR62
Length = 52
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 30/38 (78%), Positives = 34/38 (89%)
Query: 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
Q F EPTAIQAQGWP+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 7 QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 44
>UNIPROTKB|J3QRN5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005516
"calmodulin binding" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0045069 "regulation of viral genome replication" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0003676 GO:GO:0008026 EMBL:AC009994 HGNC:HGNC:2746
ChiTaRS:DDX5 Ensembl:ENST00000581697 Uniprot:J3QRN5
Length = 65
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 30/38 (78%), Positives = 34/38 (89%)
Query: 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
Q F EPTAIQAQGWP+ALSG DMVG+AQTGSGKTL+ +
Sbjct: 7 QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 44
>DICTYBASE|DDB_G0281841 [details] [associations]
symbol:ddx24 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281841 GO:GO:0005524 GenomeReviews:CM000152_GR
GO:GO:0003723 EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_640452.1 ProteinModelPortal:Q54TD7
EnsemblProtists:DDB0234200 GeneID:8623265 KEGG:ddi:DDB_G0281841
KO:K14805 OMA:NIDHVAH Uniprot:Q54TD7
Length = 940
Score = 126 (49.4 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 37/97 (38%), Positives = 61/97 (62%)
Query: 6 KTQER--AARLSESEVEAFRQKKEITVKGNNIPCPTQE---LTEGCFPNA---VLQHLKG 57
KTQ++ AA+ + +++E +++KEI+ + I Q+ ++E N +L+ L+
Sbjct: 253 KTQKQIEAAKKNINKLEKIKKRKEISEQ-KTISKEEQDQLDMSEWNSYNLDPLILKGLRS 311
Query: 58 QGFEEPTAIQAQGWPIALS-GRDMVGIAQTGSGKTLA 93
GF +PT IQ+ P+A+S G D++G AQTGSGKTLA
Sbjct: 312 LGFSKPTEIQSSVIPVAVSSGYDVIGAAQTGSGKTLA 348
Score = 74 (31.1 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTP 128
VI++ P +++ YIHR GRT R G + TP
Sbjct: 735 VIHYQVPRTTQLYIHRSGRTARSDQDGISVVLVTP 769
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 172 (65.6 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 33/89 (37%), Positives = 53/89 (59%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAI 66
+Q++ +++ + FR+ IT KG IP P + + P +L+ + G++EPT I
Sbjct: 357 SQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPI 416
Query: 67 QAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
Q Q PI L RD++G+A+TGSGKT A +
Sbjct: 417 QRQAIPIGLQNRDIIGVAETGSGKTAAFL 445
Score = 132 (51.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 49/166 (29%), Positives = 74/166 (44%)
Query: 4 HAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPT---QELTEGCFPNAVLQHLKGQGF 60
H + +++ +SESE ++KK + + P +GC + + + L+ G+
Sbjct: 635 HERVEQKVFLMSESE----KRKKLLAILEQGFDPPIIIFVNQKKGC--DVLAKSLEKMGY 688
Query: 61 EEPTAIQAQGWP---IALSG-----RD-MVGIAQTGSGKTLA----VINFDYPNSSEDYI 107
T +G ALS +D +V G G + V+N+D + EDYI
Sbjct: 689 NACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYI 748
Query: 108 HRIGRTGRCASSGTAYTFFTPNNGKQAKELI-AVLTEASQPIPPQL 152
HRIGRTGR SG A TF T + EL A+L PP+L
Sbjct: 749 HRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPEL 794
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 172 (65.6 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 33/89 (37%), Positives = 53/89 (59%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAI 66
+Q++ +++ + FR+ IT KG IP P + + P +L+ + G++EPT I
Sbjct: 358 SQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPI 417
Query: 67 QAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
Q Q PI L RD++G+A+TGSGKT A +
Sbjct: 418 QRQAIPIGLQNRDIIGVAETGSGKTAAFL 446
Score = 132 (51.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 49/166 (29%), Positives = 74/166 (44%)
Query: 4 HAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPT---QELTEGCFPNAVLQHLKGQGF 60
H + +++ +SESE ++KK + + P +GC + + + L+ G+
Sbjct: 636 HERVEQKVFLMSESE----KRKKLLAILEQGFDPPIIIFVNQKKGC--DVLAKSLEKMGY 689
Query: 61 EEPTAIQAQGWP---IALSG-----RD-MVGIAQTGSGKTLA----VINFDYPNSSEDYI 107
T +G ALS +D +V G G + V+N+D + EDYI
Sbjct: 690 NACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYI 749
Query: 108 HRIGRTGRCASSGTAYTFFTPNNGKQAKELI-AVLTEASQPIPPQL 152
HRIGRTGR SG A TF T + EL A+L PP+L
Sbjct: 750 HRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPEL 795
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 172 (65.6 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 33/89 (37%), Positives = 53/89 (59%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAI 66
+Q++ +++ + FR+ IT KG IP P + + P +L+ + G++EPT I
Sbjct: 358 SQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPI 417
Query: 67 QAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
Q Q PI L RD++G+A+TGSGKT A +
Sbjct: 418 QRQAIPIGLQNRDIIGVAETGSGKTAAFL 446
Score = 132 (51.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 49/166 (29%), Positives = 74/166 (44%)
Query: 4 HAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPT---QELTEGCFPNAVLQHLKGQGF 60
H + +++ +SESE ++KK + + P +GC + + + L+ G+
Sbjct: 636 HERVEQKVFLMSESE----KRKKLLAILEQGFDPPIIIFVNQKKGC--DVLAKSLEKMGY 689
Query: 61 EEPTAIQAQGWP---IALSG-----RD-MVGIAQTGSGKTLA----VINFDYPNSSEDYI 107
T +G ALS +D +V G G + V+N+D + EDYI
Sbjct: 690 NACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYI 749
Query: 108 HRIGRTGRCASSGTAYTFFTPNNGKQAKELI-AVLTEASQPIPPQL 152
HRIGRTGR SG A TF T + EL A+L PP+L
Sbjct: 750 HRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPEL 795
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 172 (65.6 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 33/89 (37%), Positives = 53/89 (59%)
Query: 7 TQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAI 66
+Q++ +++ + FR+ IT KG IP P + + P +L+ + G++EPT I
Sbjct: 358 SQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPI 417
Query: 67 QAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
Q Q PI L RD++G+A+TGSGKT A +
Sbjct: 418 QRQAIPIGLQNRDIIGVAETGSGKTAAFL 446
Score = 132 (51.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 49/166 (29%), Positives = 74/166 (44%)
Query: 4 HAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPT---QELTEGCFPNAVLQHLKGQGF 60
H + +++ +SESE ++KK + + P +GC + + + L+ G+
Sbjct: 636 HERVEQKVFLMSESE----KRKKLLAILEQGFDPPIIIFVNQKKGC--DVLAKSLEKMGY 689
Query: 61 EEPTAIQAQGWP---IALSG-----RD-MVGIAQTGSGKTLA----VINFDYPNSSEDYI 107
T +G ALS +D +V G G + V+N+D + EDYI
Sbjct: 690 NACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYI 749
Query: 108 HRIGRTGRCASSGTAYTFFTPNNGKQAKELI-AVLTEASQPIPPQL 152
HRIGRTGR SG A TF T + EL A+L PP+L
Sbjct: 750 HRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPEL 795
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 112 (44.5 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 93 AVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQP 147
AV N+D E ++HRIGRTGR S G A++FF+ N + ++ + A +P
Sbjct: 314 AVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIEP 368
Score = 100 (40.3 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L +L+ GF T IQAQ P L G+D++G +TGSGKT A
Sbjct: 15 LLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAA 57
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 170 (64.9 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P+ +DY+HRIGRTGR ++G A FF N K L +LTEA+Q +P L+
Sbjct: 471 VINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEVPSFLK 530
Query: 154 DLANSNPNSK 163
D S P S+
Sbjct: 531 DAMMSAPGSR 540
Score = 129 (50.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 32/96 (33%), Positives = 50/96 (52%)
Query: 28 ITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTG 87
+ G ++P P E T +L+++K F +PT +Q PI +GRD++ AQTG
Sbjct: 130 VDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTG 189
Query: 88 SGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAY 123
SGKT F +P SE + + G + + S G+ Y
Sbjct: 190 SGKTGG---FLFPVLSESF--KTGPSPQPESQGSFY 220
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 108 (43.1 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
VINFD+P +E Y+HRIGR+GR G A T ++ K + L +PIP +
Sbjct: 406 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNI 464
Score = 107 (42.7 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 26 KEITVKGNNIPCPT-QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIA 84
K++ +K +++ E + C +L + G+E+P+ IQ + PIALSGRD++ A
Sbjct: 81 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARA 140
Query: 85 QTGSGKTLAVI 95
+ G+GK+ A +
Sbjct: 141 KNGTGKSGAYL 151
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 108 (43.1 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
VINFD+P +E Y+HRIGR+GR G A T ++ K + L +PIP +
Sbjct: 406 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNI 464
Score = 107 (42.7 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 26 KEITVKGNNIPCPT-QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIA 84
K++ +K +++ E + C +L + G+E+P+ IQ + PIALSGRD++ A
Sbjct: 81 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARA 140
Query: 85 QTGSGKTLAVI 95
+ G+GK+ A +
Sbjct: 141 KNGTGKSGAYL 151
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 108 (43.1 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
VINFD+P +E Y+HRIGR+GR G A T ++ K + L +PIP +
Sbjct: 406 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNI 464
Score = 107 (42.7 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 26 KEITVKGNNIPCPT-QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIA 84
K++ +K +++ E + C +L + G+E+P+ IQ + PIALSGRD++ A
Sbjct: 81 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARA 140
Query: 85 QTGSGKTLAVI 95
+ G+GK+ A +
Sbjct: 141 KNGTGKSGAYL 151
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 108 (43.1 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
VINFD+P +E Y+HRIGR+GR G A T ++ K + L +PIP +
Sbjct: 406 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNI 464
Score = 107 (42.7 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 26 KEITVKGNNIPCPT-QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIA 84
K++ +K +++ E + C +L + G+E+P+ IQ + PIALSGRD++ A
Sbjct: 81 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARA 140
Query: 85 QTGSGKTLAVI 95
+ G+GK+ A +
Sbjct: 141 KNGTGKSGAYL 151
WARNING: HSPs involving 403 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.129 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 165 165 0.00093 107 3 11 23 0.45 32
30 0.45 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 653
No. of states in DFA: 580 (62 KB)
Total size of DFA: 141 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.41u 0.12s 17.53t Elapsed: 00:00:01
Total cpu time: 17.43u 0.12s 17.55t Elapsed: 00:00:01
Start: Thu Aug 15 17:14:57 2013 End: Thu Aug 15 17:14:58 2013
WARNINGS ISSUED: 2