RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7691
(165 letters)
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding,
hydrolase, nucleotide- RNA-binding, methylation, mRNA
processing, mRNA S nucleus; HET: ADP; 2.60A {Homo
sapiens}
Length = 242
Score = 140 bits (355), Expect = 2e-42
Identities = 47/82 (57%), Positives = 58/82 (70%)
Query: 12 ARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGW 71
+ + EVE +R+ KEITV+G+N P P E FP V+ + Q F EPTAIQAQGW
Sbjct: 1 SMRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 60
Query: 72 PIALSGRDMVGIAQTGSGKTLA 93
P+ALSG DMVG+AQTGSGKTL+
Sbjct: 61 PVALSGLDMVGVAQTGSGKTLS 82
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 123 bits (310), Expect = 2e-36
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD P+ E+Y+HRIGRTGR + G A +FF N K+L+ +L EA Q +P L+
Sbjct: 118 VINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLE 177
Query: 154 DLANSNP 160
++A +
Sbjct: 178 NMAYEHH 184
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 123 bits (310), Expect = 3e-34
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD P+ E+Y+HRIGRTGR + G A +FF N K+L+ +L EA Q +P L+
Sbjct: 348 VINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLE 407
Query: 154 DLANSNPNSKGG 165
++A + G
Sbjct: 408 NMAYE--HHYKG 417
Score = 116 bits (294), Expect = 7e-32
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 27 EITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQT 86
+ GNN P + ++ ++ +++ + PT +Q PI RD++ AQT
Sbjct: 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQT 61
Query: 87 GSGKTLA 93
GSGKT A
Sbjct: 62 GSGKTAA 68
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 113 bits (286), Expect = 1e-32
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTP-NNGKQAKELIAVLTEASQPIPPQL 152
VIN+D P E+Y+HRIGRTG ++G A TF + +L A+L EA Q +PP L
Sbjct: 126 VINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 185
Query: 153 QDLA 156
Q L
Sbjct: 186 QVLH 189
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 112 bits (283), Expect = 1e-31
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 17 SEVEAFRQKKEITVKGNNIPCP----TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWP 72
++ R K +I V+G ++P P Q E + +LQ++ GF+ PT IQ Q P
Sbjct: 2 MKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIP 61
Query: 73 IALSGRDMVGIAQTGSGKTLA 93
+ L GR+++ A TGSGKTLA
Sbjct: 62 VMLHGRELLASAPTGSGKTLA 82
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 115 bits (291), Expect = 2e-31
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 15 SESEVEAFRQKK------------EITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
S +E F + V G+++P P Q T + ++ ++ G++
Sbjct: 19 SNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKI 78
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
PT IQ P+ SGRD++ AQTGSGKT A
Sbjct: 79 PTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109
Score = 112 bits (282), Expect = 4e-30
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTP-NNGKQAKELIAVLTEASQPIPPQL 152
VIN+D P+ +DY+HRIGRTGR ++G A +FF P + A +L+ +L + Q +P L
Sbjct: 372 VINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFL 431
Query: 153 Q 153
+
Sbjct: 432 R 432
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX,
structural genomics, structural genomi consortium, SGC,
ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Length = 228
Score = 104 bits (263), Expect = 9e-29
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 28 ITVKGNNIPCPTQELTE-GCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQT 86
+ + IP PT + +L+ + G +PT IQ+Q WPI L G D++ +AQT
Sbjct: 7 KSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQT 66
Query: 87 GSGKTLA 93
G+GKTL+
Sbjct: 67 GTGKTLS 73
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics,
NPPSFA, N project on protein structural and functional
analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 101 bits (254), Expect = 3e-27
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 27 EITVKGNNIPCPT--QELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIA 84
++V G + + E + ++ ++ PT IQ P L RD++ A
Sbjct: 8 PVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACA 67
Query: 85 QTGSGKTLA 93
QTGSGKT A
Sbjct: 68 QTGSGKTAA 76
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 72.6 bits (179), Expect = 1e-16
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 50 AVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L+ L G+G PT IQA P+AL G+D++G A+TG+GKTLA
Sbjct: 11 EILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLA 54
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 72.6 bits (179), Expect = 2e-16
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
F +++ +K F +PT IQ + P AL G MVG +QTG+GKT A
Sbjct: 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHA 57
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity
A; hydrolase inhibitor-hydrolase complex, DEAD box RNA
helicase; 2.90A {Escherichia coli}
Length = 170
Score = 69.9 bits (172), Expect = 7e-16
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQ 151
V NFD P S + Y+HRIGRT R GTA + ++ + + E +PI +
Sbjct: 102 VFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK-VGRYIE--EPIKAR 156
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural
genomics, structural genomic consortium, SGC,
hydrolase; HET: ADP; 2.15A {Homo sapiens}
Length = 236
Score = 70.7 bits (174), Expect = 9e-16
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
L+ L+ + T IQ Q +AL G+D++G A+TGSGKTLA
Sbjct: 36 TLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLA 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase;
1.95A {Bacillus subtilis}
Length = 163
Score = 68.7 bits (169), Expect = 2e-15
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129
VIN+D P E Y+HR GRTGR + G A +F T
Sbjct: 107 VINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAF 142
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 69.5 bits (171), Expect = 2e-15
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 46 CFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
C +L + G+E+P+ IQ + PIALSGRD++ A+ G+GK+ A
Sbjct: 9 CLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGA 56
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 69.6 bits (171), Expect = 3e-15
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 1 MHNHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPN-----AVLQHL 55
MH+H +E+ ++ + + + +E F + + +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMEEHDSPTEASQPIVEEEETKT--FKDLGVTDVLCEAC 58
Query: 56 KGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
G+ +PT IQ + P+AL GRD++G+A+TGSGKT A
Sbjct: 59 DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGA 96
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 69.8 bits (172), Expect = 5e-15
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 50 AVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+ Q ++ GF+ T +Q++ P+ L G+++V A+TGSGKT A
Sbjct: 4 KIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAA 47
Score = 66.4 bits (163), Expect = 9e-14
Identities = 20/35 (57%), Positives = 20/35 (57%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTP 128
VINFD P YIHRIGRTGR G A TF
Sbjct: 288 VINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILN 322
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 68.9 bits (169), Expect = 7e-15
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 52 LQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
L+ +K GF T IQ + L GRD++ A+TGSGKTLA
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 107
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 68.4 bits (168), Expect = 2e-14
Identities = 22/70 (31%), Positives = 32/70 (45%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VINFD+P ++E Y+HRIGR+GR G A N+ ++ L IP +
Sbjct: 330 VINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATID 389
Query: 154 DLANSNPNSK 163
N +
Sbjct: 390 KSLYVAENDE 399
Score = 65.3 bits (160), Expect = 3e-13
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L + GFE+P+ IQ + P+A++GRD++ A+ G+GKT A
Sbjct: 32 LLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAA 74
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 65.7 bits (161), Expect = 3e-14
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS-QPIPPQL 152
VIN+D P + E+YIHRIGR GR G A F T + +E + + +P +
Sbjct: 102 VINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRE-LEKFYSTQIEELPSDI 160
Query: 153 QDLAN 157
L N
Sbjct: 161 ATLLN 165
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 67.9 bits (167), Expect = 3e-14
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGR-DMVGIAQTGSGKTLA 93
+ +L ++ +GFE+PT IQ + P+ L+ ++V A+TGSGKT +
Sbjct: 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTAS 60
Score = 65.2 bits (160), Expect = 3e-13
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129
VIN+ P + E Y+HRIGRTGR G A +
Sbjct: 310 VINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRR 345
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 67.9 bits (167), Expect = 3e-14
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P + E+YIHRIGR GR G A F T + +EL + + +P +
Sbjct: 331 VINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 390
Query: 154 DLAN 157
L N
Sbjct: 391 TLLN 394
Score = 67.2 bits (165), Expect = 6e-14
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L+ + G GFEEP+AIQ + + G D++ AQ+G+GKT
Sbjct: 32 LLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 74
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer,
ATP-binding, helicase, hydrolase, nucleotide-binding;
2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Length = 212
Score = 66.2 bits (162), Expect = 4e-14
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129
V+++ P+ +E Y HR GRTGR G + P
Sbjct: 103 VVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR 138
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene,
apoptosis, cell cycle, nucleus, phosph RNA-binding,
ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 67.2 bits (165), Expect = 6e-14
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L+ + GFE+P+AIQ + + G D++ AQ+G+GKT
Sbjct: 51 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT 93
Score = 65.7 bits (161), Expect = 2e-13
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129
VIN+D P + E+YIHRIGR GR G A T
Sbjct: 352 VINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 387
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing,
phosphorylation, rRNA processing, mRNA splicing, mRNA
transport; HET: ANP; 2.21A {Homo sapiens} SCOP:
c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C*
2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Length = 410
Score = 67.2 bits (165), Expect = 6e-14
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L+ + GFE+P+AIQ + + GRD++ +Q+G+GKT
Sbjct: 48 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTAT 90
Score = 66.1 bits (162), Expect = 1e-13
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129
+IN+D PN+ E YIHRIGR+GR G A F +
Sbjct: 348 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKND 383
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 67.1 bits (164), Expect = 7e-14
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN---------NGKQAKELIAVLTEA 144
V+ P+ +YIHRIGRT R G++ F + + K E
Sbjct: 414 VLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEP 473
Query: 145 SQPIPPQLQDLANSNPNSK 163
S+ I ++ + P
Sbjct: 474 SEEIKSEVLEAVTEEPEDI 492
Score = 66.0 bits (161), Expect = 2e-13
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 6 KTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQEL-TEGCFPNAVLQHLKGQGFEEPT 64
+ F + + + N+ L EG + + + F T
Sbjct: 37 TRSREDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLT 96
Query: 65 AIQAQGWPIALSG--RDMVGIAQTGSGKTLA 93
+Q + LS D++ A+TG+GKT A
Sbjct: 97 PVQQKTIKPILSSEDHDVIARAKTGTGKTFA 127
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 65.3 bits (160), Expect = 8e-14
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 48 PNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L+ + G GFEEP+AIQ + + G D++ AQ+G+GKT
Sbjct: 22 DENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 65.3 bits (160), Expect = 8e-14
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 46 CFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
VL+ L+ GFE P+ +Q + P+ G D++ A++G+GKT
Sbjct: 30 LLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCV 77
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 66.8 bits (163), Expect = 8e-14
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN---------NGKQAKELIAVLTEA 144
V+ P+ +YIHRIGRT R G++ F + + K E
Sbjct: 363 VLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEP 422
Query: 145 SQPIPPQLQDLANSNPNSK 163
S+ I ++ + P
Sbjct: 423 SEEIKSEVLEAVTEEPEDI 441
Score = 64.4 bits (157), Expect = 6e-13
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 50 AVLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLA 93
+ + + F T +Q + LS D++ A+TG+GKT A
Sbjct: 31 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFA 76
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 66.7 bits (163), Expect = 9e-14
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
K + ++ T Q + G+ +A TG GKT
Sbjct: 10 FRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTF 52
Score = 46.6 bits (111), Expect = 9e-07
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 94 VINFDYPNS--SEDYIHRIGRTGRCASSG--TAYTFFTPNNGKQAKELIAVLTEASQPIP 149
VI + P+ YI GR+ R + + + + + L L ++
Sbjct: 324 VIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEI 383
Query: 150 PQL 152
+
Sbjct: 384 IEE 386
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase;
RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo
sapiens} SCOP: c.37.1.19
Length = 172
Score = 64.1 bits (157), Expect = 1e-13
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS-QPIPPQL 152
N+D P S+ Y+HR+ R GR + G A TF + N + + E + +P ++
Sbjct: 103 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA
recognition motif, ATP-BIND helicase,
nucleotide-binding; 2.80A {Thermus thermophilus}
Length = 300
Score = 65.5 bits (160), Expect = 2e-13
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129
V+++ P+ +E Y HR GRTGR G + P
Sbjct: 100 VVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR 135
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 64.9 bits (159), Expect = 2e-13
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L+ + GFE+P+AIQ + + G D++ AQ+G+GKT
Sbjct: 41 LLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTAT 83
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 63.7 bits (156), Expect = 1e-12
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 94 VINFDYPNS------SEDYIHRIGRTGRCASSGTAYTFFTPN 129
V+N+D P + Y+HRIGRTGR G + F
Sbjct: 429 VVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470
Score = 47.9 bits (115), Expect = 3e-07
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 66 IQAQGWPIALSG--RDMVGIAQTGSGKTLA 93
IQ + P+ LS R+M+G +Q+G+GKT A
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAA 174
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 62.6 bits (153), Expect = 2e-12
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS-QPIPPQL 152
N+D P S+ Y+HR+ R GR + G A TF + N + + E + +P ++
Sbjct: 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 381
Score = 59.9 bits (146), Expect = 2e-11
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 46 CFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L+ + GFE P+ +Q + P A+ G D++ A++G GKT
Sbjct: 14 LLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAV 61
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase,
helicase, mRNA-export, nuclear pore, hydrolase-RNA
complex; HET: ADP; 1.40A {Saccharomyces cerevisiae}
PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A
3gfp_A 2kbf_A 3pev_A* 3peu_A*
Length = 395
Score = 62.6 bits (153), Expect = 3e-12
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLA 93
+L+ + F++P+ IQ + P+ L R+M+ +Q+G+GKT A
Sbjct: 16 LLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAA 60
Score = 58.7 bits (143), Expect = 5e-11
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 94 VINFDYPNSS------EDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQ- 146
V+N+D P + YIHRIGRTGR G A +F N I +
Sbjct: 315 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEM 374
Query: 147 -PIPPQLQDLA 156
+P D
Sbjct: 375 TRVPTDDWDEV 385
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens}
SCOP: c.37.1.19
Length = 220
Score = 61.1 bits (149), Expect = 3e-12
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+L+ + GFE P+ +Q + P A+ G D++ A++G GKT
Sbjct: 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAV 67
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 61.4 bits (150), Expect = 7e-12
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 48 PNAVLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLA 93
+LQ + GF P+ IQ P+ L+ ++++ +Q+G+GKT A
Sbjct: 33 KPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 80
Score = 56.8 bits (138), Expect = 3e-10
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 94 VINFDYPNS------SEDYIHRIGRTGRCASSGTAYTFFTPNN 130
VINFD P +E Y+HRIGRTGR G A +
Sbjct: 338 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural
genomics, structural consortium, SGC, alternative
initiation, ATP-binding, devel protein; 2.80A {Homo
sapiens}
Length = 175
Score = 59.1 bits (144), Expect = 9e-12
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 94 VINFDYPNSS------EDYIHRIGRTGRCASSGTAYTFFTPN 129
V+NFD P E Y+HRIGRTGR G A+ +
Sbjct: 106 VVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVD 147
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 60.0 bits (146), Expect = 2e-11
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLA 93
+LQ + GF P+ IQ P+ L+ ++++ +Q+G+GKT A
Sbjct: 103 LLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 147
Score = 55.8 bits (135), Expect = 7e-10
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 94 VINFDYPNS------SEDYIHRIGRTGRCASSGTAYTFFTPNN 130
VINFD P +E Y+HRIGRTGR G A +
Sbjct: 405 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 57.8 bits (140), Expect = 9e-11
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 51 VLQHLKGQGFEEPTAIQAQGWPIALSG--RDMVGIAQTGSGKTLA 93
+LQ + GF P+ IQ P+ L+ ++++ +Q+G+GKT A
Sbjct: 103 LLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 147
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 49.8 bits (118), Expect = 6e-08
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143
V+ ++ S+ I R GRTGR G +A + E
Sbjct: 441 VVFYEPVPSAIRSIQRRGRTGR-HMPGRVIILMAKGTRDEAYYWSSRQKE 489
Score = 30.9 bits (69), Expect = 0.15
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92
+P Q + ++ + TG GKTL
Sbjct: 9 QPRIYQEVIYAKCKETNCLI-VLPTGLGKTL 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 41.7 bits (98), Expect = 5e-05
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 39 TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
+EL E + + LK +G EE QA+ SG++++ T +GKTL
Sbjct: 3 VEELAES-ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLL 56
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 37.0 bits (86), Expect = 0.001
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 48 PNAVLQHLKGQGFEEPTAIQAQGWPIAL-SGRDMVGIAQTGSGKTL 92
P+ V++ +K +G ++ Q + L G ++ + TGSGKTL
Sbjct: 16 PSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTL 61
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold,
ATP-binding, hydrolase, nucleotide- binding; 2.00A
{Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 35.6 bits (82), Expect = 0.004
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 48 PNAVLQHLKGQGFEEPTAIQAQGWPIAL-SGRDMVGIAQTGSGKTLA 93
+ LK +G E QA+ + G++ + T SGKTL
Sbjct: 9 DERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLI 55
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.018
Identities = 27/190 (14%), Positives = 55/190 (28%), Gaps = 59/190 (31%)
Query: 1 MHNHAKTQERAARLSESEVEAFRQKKEITVKGN-NIPCPTQELTEGCFPNAVLQHLKGQG 59
+ + R+ + + ++ K N + P +L + L L+
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA------LLELRPAK 151
Query: 60 FEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT-LAV------------------INFDYP 100
+ + G + GSGKT +A+ +N
Sbjct: 152 N------------VLIDG--V-----LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 101 NSSEDYI-------HRIGRTGRCASSGTAYTFFTPNNGKQA-KELIAVLTEASQPIPPQL 152
NS E + ++I S ++ ++ + + L+ S+P L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-----KSKPYENCL 247
Query: 153 QDLAN-SNPN 161
L N N
Sbjct: 248 LVLLNVQNAK 257
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 32.6 bits (73), Expect = 0.052
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143
V+ ++Y + I GR GR A S T E E
Sbjct: 716 VVLYEYSGNVTKMIQVRGR-GRAAGS--KCILVTSKTEVVENEKCNRYKE 762
Score = 31.9 bits (71), Expect = 0.096
Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
++ + ++++ + + +T P G + + ++
Sbjct: 191 REDNAKDVDSEMTDASEDCL--EASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKK 248
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92
+ Q + A++G++ + A TGSGKT
Sbjct: 249 ARSYQIELAQPAINGKNALICAPTGSGKTF 278
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 31.8 bits (71), Expect = 0.083
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143
V+ ++Y + I GR GR ++G+ T E E
Sbjct: 716 VVLYEYSGNVTKMIQVRGR-GR--AAGSKCILVTSKTEVVENEKCNRYKE 762
Score = 31.5 bits (70), Expect = 0.12
Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 3 NHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEE 62
++ + ++++ + + +T P G + + ++
Sbjct: 191 REDNAKDVDSEMTDASEDCL--EASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKK 248
Query: 63 PTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92
+ Q + A++G++ + A TGSGKT
Sbjct: 249 ARSYQIELAQPAINGKNALICAPTGSGKTF 278
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 31.8 bits (71), Expect = 0.089
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143
V+ ++Y + I GR GR A S T E E
Sbjct: 475 VVLYEYSGNVTKMIQVRGR-GRAAGS--KCILVTSKTEVVENEKCNRYKE 521
Score = 27.6 bits (60), Expect = 2.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92
+ + Q + A++G++ + A TGSGKT
Sbjct: 7 KARSYQIELAQPAINGKNALICAPTGSGKTF 37
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.12
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 8 QERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTE 44
+E+ RL E + + ++E K ++L E
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAK------KDLEE 122
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 31.1 bits (69), Expect = 0.18
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143
VI ++Y + I GR S T N G KE I + E
Sbjct: 483 VILYEYVGNVIKMIQTRGRGRARGSK---CFLLTSNAGVIEKEQINMYKE 529
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 62 EPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92
+P Q + A+ G++ + A TG GKT
Sbjct: 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTF 43
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 30.2 bits (67), Expect = 0.34
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTE 143
VI ++Y + I GR GR S T + KE ++ E
Sbjct: 474 VILYEYVGNVIKMIQTRGR-GRARDS--KCFLLTSSADVIEKEKANMIKE 520
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 29.2 bits (65), Expect = 0.75
Identities = 11/63 (17%), Positives = 15/63 (23%), Gaps = 23/63 (36%)
Query: 83 IAQTG----------SGKTL-AVINFDY-----------PNSSEDYIHRIGRTGRCASSG 120
TG + ++F P + R GRTGR G
Sbjct: 448 ALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGR-RG 506
Query: 121 TAY 123
Sbjct: 507 IYR 509
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 27.9 bits (62), Expect = 1.5
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 107 IHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145
R GR GR + + + + E A TEA
Sbjct: 288 AQRRGRIGRNP-AQEDDQYVFSGDPLKNDEDHAHWTEAK 325
Score = 25.6 bits (56), Expect = 8.6
Identities = 5/21 (23%), Positives = 7/21 (33%), Gaps = 1/21 (4%)
Query: 72 PIALS-GRDMVGIAQTGSGKT 91
R + G+GKT
Sbjct: 13 EDIFRKKRLTIMDLHPGAGKT 33
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 28.0 bits (62), Expect = 1.7
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 107 IHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEAS 145
R GR GR + + + + E A TEA
Sbjct: 455 AQRRGRIGRNP-AQEDDQYVFSGDPLKNDEDHAHWTEAK 492
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 27.1 bits (60), Expect = 2.9
Identities = 10/38 (26%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 107 IHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEA 144
R GR GR + N E TEA
Sbjct: 268 AQRRGRIGRNP-EKLGDIYAYSGNVSSDNEGHVSWTEA 304
>2mad_H Methylamine dehydrogenase (heavy subunit);
oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A
{Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H*
1maf_H*
Length = 373
Score = 26.0 bits (56), Expect = 6.3
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 66 IQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNS 102
I+ P G A T + L F +
Sbjct: 113 IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 7.3
Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 41/132 (31%)
Query: 50 AVLQHLKGQGFEEPTAIQAQGWPI----ALSGRDMVGIAQTGSGKTLAVINFDYPNSSED 105
A + LK +G A A G + AL +A V++ E
Sbjct: 1742 AAFEDLKSKGLIPADATFA-GHSLGEYAAL-----ASLAD--------VMSI------ES 1781
Query: 106 YI----HRIGRTGRCA-----SSGTAYTFFTPNNGKQAK-----ELIAVLTEASQPIPPQ 151
+ +R G T + A + Y N G+ A L V+ +
Sbjct: 1782 LVEVVFYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 152 LQDLANSN-PNS 162
++ + N N N
Sbjct: 1841 VE-IVNYNVENQ 1851
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.129 0.378
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,427,811
Number of extensions: 133430
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 88
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)