RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7691
(165 letters)
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 64.2 bits (155), Expect = 1e-13
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 27 EITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQT 86
+T + + E + ++ ++ PT IQ P L RD++ AQT
Sbjct: 8 SVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQT 67
Query: 87 GSGKTLAVINF 97
GSGKT A +
Sbjct: 68 GSGKTAAFLIP 78
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 62.2 bits (150), Expect = 5e-13
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 34 NIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
N + ++L+ + GFE+P+AIQ + + G D++ AQ+G+GKT
Sbjct: 6 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT 65
Query: 94 VINFDYPNSSEDYIH 108
D
Sbjct: 66 FAISILQQIELDLKA 80
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 202
Score = 61.1 bits (147), Expect = 1e-12
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 39 TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTL 92
+EL E + + LK +G EE QA+ SG++++ T +GKTL
Sbjct: 3 VEELAES-ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTL 55
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 57.2 bits (137), Expect = 3e-11
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDY 106
+L+ + GFE+P+AIQ + + GRD++ +Q+G+GKT
Sbjct: 24 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 83
Query: 107 IH 108
Sbjct: 84 RE 85
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 56.1 bits (134), Expect = 6e-11
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDY 106
+L + GFE+P+ IQ + P+A++GRD++ A+ G+GKT A +
Sbjct: 8 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL 67
Query: 107 IH 108
Sbjct: 68 NK 69
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 56.2 bits (134), Expect = 6e-11
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDY 106
F +++ +K F +PT IQ + P AL G MVG +QTG+GKT A + +
Sbjct: 8 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER 67
Query: 107 IH 108
Sbjct: 68 AE 69
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 56.8 bits (136), Expect = 8e-11
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN 130
V+ ++ S+ I R GRTGR G
Sbjct: 241 VVFYEPVPSAIRSIQRRGRTGR-HMPGRVIILMAKGT 276
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 54.9 bits (131), Expect = 1e-10
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
VIN+D P + E+YIHRIGR GR G A F T + +EL + + +P +
Sbjct: 99 VINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 158
Query: 154 DLAN 157
L N
Sbjct: 159 TLLN 162
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 54.4 bits (130), Expect = 3e-10
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 34 NIPCPTQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA 93
N + + +L+ + G GFEEP+AIQ + + G D++ AQ+G+GKT
Sbjct: 4 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 63
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 54.1 bits (129), Expect = 5e-10
Identities = 12/46 (26%), Positives = 14/46 (30%)
Query: 50 AVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+ EP AIQ L A TG GKT +
Sbjct: 31 KEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGL 76
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 53.7 bits (128), Expect = 5e-10
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
+L+ + GFE P+ +Q + P A+ G D++ A++G GKT
Sbjct: 8 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKT 52
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 53.4 bits (127), Expect = 7e-10
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDY 106
+L + G+E+P+ IQ + PIALSGRD++ A+ G+GK+ A +
Sbjct: 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK 69
Query: 107 IH 108
+
Sbjct: 70 DN 71
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 53.0 bits (126), Expect = 1e-09
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTA---YTFFTPNNG 131
+ S+ +YI R+GR R + Y + G
Sbjct: 160 GVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTG 200
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 53.0 bits (127), Expect = 2e-09
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 1/48 (2%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVL 141
+ P + R GRTGR G + +
Sbjct: 121 IETTTLPQDAVSRTQRRGRTGRGK-PGIYRFVAPGERPSGMFDSSVLC 167
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 50.7 bits (120), Expect = 4e-09
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKEL 137
VIN+ P + E Y+HRIGRTGR G A + K+ + +
Sbjct: 100 VINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYI 143
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 206
Score = 51.2 bits (121), Expect = 4e-09
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 48 PNAVLQHLKGQ-GFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKT 91
+ Q L+ G+++ Q + LSGRD + + TG GK+
Sbjct: 10 ESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKS 54
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 50.1 bits (119), Expect = 4e-09
Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 2/91 (2%)
Query: 39 TQELTEGCFPNAVLQHLKGQGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFD 98
EL + +G + + + M G +
Sbjct: 48 CDELAAKLVALGINAVAYYRGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDG 107
Query: 99 YPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129
P + R GRTGR Y F P
Sbjct: 108 KPQDAVSRTQRRGRTGRGKPG--IYRFVAPG 136
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 49.6 bits (117), Expect = 1e-08
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQ 153
+IN+D PN+ E YIHRIGR+GR G A F ++ + +++ + +P +
Sbjct: 106 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVA 165
Query: 154 DL 155
DL
Sbjct: 166 DL 167
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 48.9 bits (116), Expect = 3e-08
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Query: 47 FPNAVLQHLKGQGFEEPTAIQAQGWPIALSGR-DMVGIAQTGSGKTLAVINFDYPNSSED 105
+ +L ++ +GFE+PT IQ + P+ L+ ++V A+TGSGKT + +E+
Sbjct: 11 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN 70
Query: 106 YIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQLQDLANSN 159
+ K K L + I PQ++ L N+N
Sbjct: 71 NGIEAIILTPTRELAIQV-ADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNAN 123
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 48.2 bits (114), Expect = 7e-08
Identities = 5/84 (5%), Positives = 19/84 (22%), Gaps = 4/84 (4%)
Query: 76 SGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAK 135
+ + + P+ + I + + N + +
Sbjct: 78 HYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIE 133
Query: 136 ELIAVLTEASQPIPPQLQDLANSN 159
L+ + + L+ +
Sbjct: 134 RLLPAVERHIDEVREILKKVMGKE 157
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 45.8 bits (107), Expect = 3e-07
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQPIPPQL 152
VINFD+P ++E Y+HRIGR+GR G A N+ ++ L IP +
Sbjct: 104 VINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 162
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 44.6 bits (104), Expect = 8e-07
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 94 VINFDYPNSS------EDYIHRIGRTGRCASSGTAYTFFTPNNGKQAKELIAVLTEASQP 147
V+NFD P E Y+HRIGRTGR G A+ + L+ + +
Sbjct: 104 VVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE---LPSLMKIQDHFNSS 160
Query: 148 IPP 150
I
Sbjct: 161 IKQ 163
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 44.1 bits (103), Expect = 2e-06
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 88 SGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFT 127
G+ ++ P + R GR GR + +
Sbjct: 259 DGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYM 298
Score = 33.7 bits (76), Expect = 0.007
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 76 SGRDMVGIAQTGSGKTLAVI 95
R + G+GKT +
Sbjct: 8 KKRLTIMDLHPGAGKTKRYL 27
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 40.8 bits (94), Expect = 2e-05
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNN-GKQAKELIAVLTEASQPIPPQL 152
N+D P S+ Y+HR+ R GR + G A TF + N K ++ +P ++
Sbjct: 99 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158
Query: 153 Q 153
Sbjct: 159 D 159
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 39.5 bits (91), Expect = 6e-05
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 96 NFDYPNSSEDYIHRIGRTGRC--ASSGTAYTFFTPNNGKQAKE 136
+ +Y GR GR G A + + A +
Sbjct: 151 GYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVK 193
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 34.8 bits (78), Expect = 0.002
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 58 QGFEEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAVI 95
+ +P Q + + + + TG GKTL +
Sbjct: 5 RDLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAM 41
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 33.1 bits (74), Expect = 0.009
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 94 VINFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPNNGKQAK 135
V++FD P + E Y GR GR A F+ P + +
Sbjct: 102 VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 143
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 29.4 bits (66), Expect = 0.21
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 2 HNHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFE 61
+ A E A +EAF+++KE + + IP + G A+ + L Q +
Sbjct: 387 YQTATAIESAKTAIRMAIEAFKERKE-SNRPVYIPQIKNRVVAGWSLEALTKLLATQNAQ 445
Query: 62 EP 63
P
Sbjct: 446 NP 447
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 26.6 bits (57), Expect = 0.99
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 77 GRDMVGIAQTGSGKTLAVI 95
G V G+GKT +
Sbjct: 7 GMTTVLDFHPGAGKTRRFL 25
>d1vpta_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia
virus [TaxId: 10245]}
Length = 297
Score = 27.1 bits (60), Expect = 1.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 94 VINFDYPNSSEDYIHR 109
V+NFDYPN DY H
Sbjct: 248 VVNFDYPNQEYDYFHM 263
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 26.8 bits (58), Expect = 1.3
Identities = 5/34 (14%), Positives = 9/34 (26%), Gaps = 4/34 (11%)
Query: 96 NFDYPNSSEDYIHRIGRTGRCASSGTAYTFFTPN 129
N + + R G+ C Y +
Sbjct: 201 NPANDEQAMARVWRDGQKKTC----YIYRLLSTG 230
>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 610
Score = 26.7 bits (59), Expect = 1.7
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 2 HNHAKTQERAARLSESEVEAFRQKKEITVKGNNIPCPTQELTEGCFPNAVLQHLKGQGFE 61
+ K E A + + AF ++ V IP Q+ G AV+ L +
Sbjct: 344 FDEHKAVETAKTIIRMAIAAFGRRDPNRV---AIPAFKQKSIVGFSAEAVVAALAKVNAD 400
Query: 62 EP 63
+P
Sbjct: 401 DP 402
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 25.6 bits (56), Expect = 2.4
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 92 LAVINFDYPNSSEDYIHRIGRTGRCASSGTAYTF 125
LAV+ + S GR+GR G +
Sbjct: 110 LAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 143
>d1r89a3 d.58.16.2 (A:258-437) tRNA nucleotidyltransferase,
C-terminal domain {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 180
Score = 25.1 bits (55), Expect = 3.4
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 71 WPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIH-RIGRTGR 115
P+ + + I + G + + F P+ +D ++ ++ R R
Sbjct: 1 HPLEIEPERLRKIVE-ERGTAVFAVKFRKPDIVDDNLYPQLERASR 45
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 24.3 bits (52), Expect = 7.8
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 96 NFDYPNSSEDYIHRIGRTGR 115
+ S I IGR R
Sbjct: 110 KEGFLRSERSLIQTIGRAAR 129
>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId:
7091]}
Length = 119
Score = 23.6 bits (51), Expect = 8.0
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 65 AIQAQGWPIALSGRDMVGIAQTGSGKTLAVINFDYPNSSEDYIHRIGRTGRCASSGT 121
++ G+ L + V + + S + + N + S + + +I C+ +
Sbjct: 11 ELRKHGFEENLMR-NWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGAS 66
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 24.0 bits (51), Expect = 8.6
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 83 IAQTGSGKTLAVINF 97
A TGSGK+ V
Sbjct: 14 HAPTGSGKSTKVPAA 28
>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab
(Tachypleus tridentatus) [TaxId: 6853]}
Length = 235
Score = 24.1 bits (52), Expect = 8.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 101 NSSEDYIHRIGRTGRCASSGTAYTFFTPN 129
+ ++++I R G SG + FF PN
Sbjct: 116 SDTDNWIARATEVGSGGWSGFKFLFFHPN 144
>d1qqya_ d.2.1.2 (A:) Lysozyme {Dog (Canis familiaris), milk [TaxId:
9615]}
Length = 130
Score = 23.7 bits (51), Expect = 9.1
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 78 RDMVGIAQTGSGKTLAVINFDYPNSSEDY-IHRIGRTGRCASSGT 121
+ V +A+ S N N S DY I ++ C S+
Sbjct: 27 ANWVCMAEYESNFNTQAFNGRNSNGSSDYGIFQLNSKWWCKSNSH 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.129 0.378
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 579,838
Number of extensions: 24311
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 41
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.4 bits)