BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7694
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IXD|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
V298e Mutant Beta-Lactamase At 2.64 Angstrom Resolution
pdb|3IXD|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
V298e Mutant Beta-Lactamase At 2.64 Angstrom Resolution
Length = 358
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A + +T + A R+
Sbjct: 289 ALAARPEKAITPPTPAVRA 307
>pdb|3IWO|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase At 1.90 Angstrom Resolution
pdb|3IWO|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase At 1.90 Angstrom Resolution
pdb|3IXH|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase In Complex With Cefotaxime
At 2.3 Angstrom Resolution
pdb|3IXH|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase In Complex With Cefotaxime
At 2.3 Angstrom Resolution
Length = 358
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 289 ALAARPVKAITPPTPAVRA 307
>pdb|2ZJ9|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase (Ampc(D))
From An Escherichia Coli With A Tripeptide Deletion
(Gly286 Ser287 Asp288) On The H10 Helix
pdb|2ZJ9|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase (Ampc(D))
From An Escherichia Coli With A Tripeptide Deletion
(Gly286 Ser287 Asp288) On The H10 Helix
Length = 355
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + I NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPD---IIINNKI 285
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 286 ALAARPVKPITPPTPAVRA 304
>pdb|1FCM|A Chain A, Crystal Structure Of The E.Coli Ampc Beta-Lactamase Mutant
Q120lY150E Covalently Acylated With The Inhibitory
Beta-Lactam, Cloxacillin
pdb|1FCM|B Chain B, Crystal Structure Of The E.Coli Ampc Beta-Lactamase Mutant
Q120lY150E Covalently Acylated With The Inhibitory
Beta-Lactam, Cloxacillin
pdb|1FCN|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant Q120lY150E COVALENTLY ACYLATED WITH THE SUBSTRATE
BETA-Lactam Loracarbef
pdb|1FCN|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant Q120lY150E COVALENTLY ACYLATED WITH THE SUBSTRATE
BETA-Lactam Loracarbef
pdb|1O07|A Chain A, Crystal Structure Of The Complex Between Q120lY150E MUTANT
OF AMPC And A Beta-Lactam Inhibitor (Mxg)
pdb|1O07|B Chain B, Crystal Structure Of The Complex Between Q120lY150E MUTANT
OF AMPC And A Beta-Lactam Inhibitor (Mxg)
Length = 358
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 289 ALAARPVKAITPPTPAVRA 307
>pdb|1KVL|A Chain A, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
In Complex With Substrate And Product Forms Of
Cephalothin
pdb|1KVL|B Chain B, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
In Complex With Substrate And Product Forms Of
Cephalothin
pdb|1L0G|A Chain A, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
pdb|1L0G|B Chain B, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
Length = 358
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 289 ALAARPVKAITPPTPAVRA 307
>pdb|1L0E|A Chain A, X-Ray Crystal Structure Of Ampc K67q Mutant Beta-Lactamase
pdb|1L0E|B Chain B, X-Ray Crystal Structure Of Ampc K67q Mutant Beta-Lactamase
Length = 358
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 289 ALAARPVKAITPPTPAVRA 307
>pdb|3IWI|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Omega Loop Insertion (H210aaa) Mutant Beta-Lactamase At
1.64 Angstrom Resolution
pdb|3IWI|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Omega Loop Insertion (H210aaa) Mutant Beta-Lactamase At
1.64 Angstrom Resolution
Length = 361
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 232 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 291
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 292 ALAARPVKAITPPTPAVRA 310
>pdb|2P9V|A Chain A, Structure Of Ampc Beta-Lactamase With Cross-Linked Active
Site After Exposure To Small Molecule Inhibitor
Length = 358
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 289 ALAARPVKAITPPTPAVRA 307
>pdb|1FSW|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cephalothinboronic Acid
pdb|1FSW|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cephalothinboronic Acid
pdb|1FSY|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cloxacillinboronic Acid
pdb|1FSY|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cloxacillinboronic Acid
Length = 358
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 289 ALAARPVKAITPPTPAVRA 307
>pdb|2BLS|A Chain A, Ampc Beta-Lactamase From Escherichia Coli
pdb|2BLS|B Chain B, Ampc Beta-Lactamase From Escherichia Coli
pdb|3BLS|A Chain A, Ampc Beta-lactamase From Escherichia Coli
pdb|3BLS|B Chain B, Ampc Beta-lactamase From Escherichia Coli
pdb|1C3B|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor,
Benzo(B) Thiophene-2-Boronic Acid (Bzb)
pdb|1C3B|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor,
Benzo(B) Thiophene-2-Boronic Acid (Bzb)
pdb|1FCO|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Covalently Acylated With The Inhibitory Beta-Lactam,
Moxalactam
pdb|1FCO|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Covalently Acylated With The Inhibitory Beta-Lactam,
Moxalactam
pdb|1IEL|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Ceftazidime
pdb|1IEL|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Ceftazidime
pdb|1IEM|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With A Boronic Acid Inhibitor (1, Cefb4)
pdb|1IEM|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With A Boronic Acid Inhibitor (1, Cefb4)
pdb|1GA9|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli
Complexed With Non-Beta-Lactamase Inhibitor (2, 3-(4-
Benzenesulfonyl-Thiophene-2-Sulfonylamino)-Phenylboronic
Acid)
pdb|1GA9|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli
Complexed With Non-Beta-Lactamase Inhibitor (2, 3-(4-
Benzenesulfonyl-Thiophene-2-Sulfonylamino)-Phenylboronic
Acid)
pdb|1KVM|A Chain A, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Cephalothin
pdb|1KVM|B Chain B, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Cephalothin
pdb|1KDS|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 3-Nitrophenylboronic
Acid
pdb|1KDS|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 3-Nitrophenylboronic
Acid
pdb|1KDW|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor
4-Carboxyphenylboronic Acid
pdb|1KDW|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor
4-Carboxyphenylboronic Acid
pdb|1KE0|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 4-(Carboxyvin-2-Yl)
Phenylboronic Acid
pdb|1KE0|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 4-(Carboxyvin-2-Yl)
Phenylboronic Acid
pdb|1KE3|A Chain A, X-ray Crystal Structure Of Ampc Beta-lactamase From E.
Coli In Complex With The Inhibitor
4,4'-biphenyldiboronic Acid
pdb|1KE3|B Chain B, X-ray Crystal Structure Of Ampc Beta-lactamase From E.
Coli In Complex With The Inhibitor
4,4'-biphenyldiboronic Acid
pdb|1KE4|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli
pdb|1KE4|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli
pdb|1L2S|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With A Dock-Predicted Non-Covalent
Inhibitor
pdb|1L2S|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With A Dock-Predicted Non-Covalent
Inhibitor
pdb|1LL9|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Amoxicillin
pdb|1LL9|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Amoxicillin
pdb|1LLB|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Atmo-Penicillin
pdb|1LLB|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Atmo-Penicillin
pdb|1LL5|A Chain A, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Imipenem
pdb|1LL5|B Chain B, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Imipenem
pdb|1MXO|A Chain A, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1MXO|B Chain B, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1MY8|A Chain A, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1MY8|B Chain B, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1XGI|A Chain A, Ampc Beta-Lactamase In Complex With 3-(3-Nitro-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|1XGI|B Chain B, Ampc Beta-Lactamase In Complex With 3-(3-Nitro-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|1XGJ|A Chain A, Ampc Beta-Lactamase In Complex With
3-(4-Carboxy-2-Hydroxy-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|1XGJ|B Chain B, Ampc Beta-Lactamase In Complex With
3-(4-Carboxy-2-Hydroxy-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|2HDQ|A Chain A, Ampc Beta-Lactamase In Complex With 2-Carboxythiophene
pdb|2HDQ|B Chain B, Ampc Beta-Lactamase In Complex With 2-Carboxythiophene
pdb|2HDR|A Chain A, Ampc Beta-Lactamase In Complex With 4-Amino-3-
Hydroxybenzoic Acid
pdb|2HDR|B Chain B, Ampc Beta-Lactamase In Complex With 4-Amino-3-
Hydroxybenzoic Acid
pdb|2HDS|A Chain A, Ampc Beta-Lactamase In Complex With 4-Methanesulfonylamino
Benzoic Acid
pdb|2HDS|B Chain B, Ampc Beta-Lactamase In Complex With 4-Methanesulfonylamino
Benzoic Acid
pdb|2HDU|A Chain A, Ampc Beta-Lactamase In Complex With
2-Acetamidothiophene-3- Carboxylic Acid
pdb|2HDU|B Chain B, Ampc Beta-Lactamase In Complex With
2-Acetamidothiophene-3- Carboxylic Acid
pdb|2P9V|B Chain B, Structure Of Ampc Beta-Lactamase With Cross-Linked Active
Site After Exposure To Small Molecule Inhibitor
pdb|2I72|A Chain A, Ampc Beta-Lactamase In Complex With 5-Diformylaminomethyl-
Benzo[b]thiophen-2-Boronic Acid
pdb|2I72|B Chain B, Ampc Beta-Lactamase In Complex With 5-Diformylaminomethyl-
Benzo[b]thiophen-2-Boronic Acid
pdb|2RCX|A Chain A, Ampc Beta-Lactamase In Complex With
(1r)-1-(2-Thiophen-2-Yl-
Acetylamino)-1-(3-(2-Carboxyvinyl)-Phenyl) Methylboronic
Acid
pdb|2RCX|B Chain B, Ampc Beta-Lactamase In Complex With
(1r)-1-(2-Thiophen-2-Yl-
Acetylamino)-1-(3-(2-Carboxyvinyl)-Phenyl) Methylboronic
Acid
pdb|2PU2|A Chain A, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|2PU2|B Chain B, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|2PU4|A Chain A, Ampc Beta-Lacamase With Bound Covalent Oxadiazole
Inhibitor
pdb|2PU4|B Chain B, Ampc Beta-Lacamase With Bound Covalent Oxadiazole
Inhibitor
pdb|2R9W|A Chain A, Ampc Beta-lactamase With Bound Phthalamide Inhibitor
pdb|2R9W|B Chain B, Ampc Beta-lactamase With Bound Phthalamide Inhibitor
pdb|2R9X|A Chain A, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|2R9X|B Chain B, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|3BM6|A Chain A, Ampc Beta-Lactamase In Complex With A
P.Carboxyphenylboronic
pdb|3BM6|B Chain B, Ampc Beta-Lactamase In Complex With A
P.Carboxyphenylboronic
pdb|3GQZ|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GQZ|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GR2|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GR2|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GRJ|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GRJ|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GSG|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GSG|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GTC|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GTC|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GV9|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GV9|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GVB|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GVB|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3O86|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O86|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O87|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O87|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O88|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O88|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|4E3I|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 3- Carboxyl Benzyl Sulfonamide Boronic Acid
Inhibitor
pdb|4E3I|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 3- Carboxyl Benzyl Sulfonamide Boronic Acid
Inhibitor
pdb|4E3J|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3J|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3K|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Pyridine Sulfonamide Boronic Acid
Inhibitor
pdb|4E3K|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Pyridine Sulfonamide Boronic Acid
Inhibitor
pdb|4E3L|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
3-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3L|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
3-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3M|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3M|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3N|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2- Trifluoromethyl-4-Tetrazolyl Benzene Sulfonamide
Boronic Acid Inhibitor
pdb|4E3N|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2- Trifluoromethyl-4-Tetrazolyl Benzene Sulfonamide
Boronic Acid Inhibitor
pdb|4E3O|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Small Chloromethyl Sulfonamide Boronic Acid Inhibitor
pdb|4E3O|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Small Chloromethyl Sulfonamide Boronic Acid Inhibitor
Length = 358
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 289 ALAARPVKAITPPTPAVRA 307
>pdb|1I5Q|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant N152a Covalently Acylated With The Inhibitory
Beta-Lactam, Moxalactam
pdb|1I5Q|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant N152a Covalently Acylated With The Inhibitory
Beta-Lactam, Moxalactam
Length = 358
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 289 ALAARPVKAITPPTPAVRA 307
>pdb|3FKV|A Chain A, Ampc K67r Mutant Complexed With
Benzo(B)thiophene-2-Boronic Acid (Bzb)
pdb|3FKV|B Chain B, Ampc K67r Mutant Complexed With
Benzo(B)thiophene-2-Boronic Acid (Bzb)
pdb|3FKW|A Chain A, Ampc K67r Mutant Apo Structure
pdb|3FKW|B Chain B, Ampc K67r Mutant Apo Structure
Length = 358
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 289 ALAARPVKAITPPTPAVRA 307
>pdb|1L0F|A Chain A, X-Ray Crystal Structure Of Ampc N152h Mutant
Beta-Lactamase
pdb|1L0F|B Chain B, X-Ray Crystal Structure Of Ampc N152h Mutant
Beta-Lactamase
Length = 358
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 289 ALAARPVKAITPPTPAVRA 307
>pdb|3IXG|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc T70i
Mutant Beta-Lactamase With And Without
Benzo(B)thiophene-2- Boronic Acid Bound At 2.14 Angstrom
Resolution
pdb|3IXG|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc T70i
Mutant Beta-Lactamase With And Without
Benzo(B)thiophene-2- Boronic Acid Bound At 2.14 Angstrom
Resolution
Length = 358
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 289 ALAARPVKAITPPTPAVRA 307
>pdb|3IWQ|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase At 1.84 Angstrom Resolution
pdb|3IWQ|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase At 1.84 Angstrom Resolution
pdb|3IXB|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase Complexed With
Benzo(B)thiophene-2- Boronic Acid (Bzb) At 1.63 Angstrom
Resolution
pdb|3IXB|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase Complexed With
Benzo(B)thiophene-2- Boronic Acid (Bzb) At 1.63 Angstrom
Resolution
Length = 358
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 289 ALAARPVKAITPPTPAVRA 307
>pdb|1L0D|A Chain A, X-Ray Crystal Structure Of Ampc S64d Mutant Beta-Lactamase
pdb|1L0D|B Chain B, X-Ray Crystal Structure Of Ampc S64d Mutant Beta-Lactamase
Length = 358
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 86 KFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV 145
++ + + +PL++N+ + ++ + RY T +Y+ L +LD V P+ + NK+
Sbjct: 229 RWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKI 288
Query: 146 LQLALDDTVLTDKSYAQRS 164
A +T + A R+
Sbjct: 289 ALAARPVKAITPPTPAVRA 307
>pdb|2XFZ|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 1 Of 4)
pdb|2XG1|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 3 Of 4)
Length = 97
Score = 28.1 bits (61), Expect = 7.2, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 69 KQNGGGEKQNGDQDGGRKFFKQDGR 93
KQNGGG+++ D GRK ++ D +
Sbjct: 34 KQNGGGKRKRWTGDKGRKIYEWDSQ 58
>pdb|1E44|B Chain B, Ribonuclease Domain Of Colicin E3 In Complex With Its
Immunity Protein
Length = 96
Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 69 KQNGGGEKQNGDQDGGRKFFKQDGR 93
KQNGGG+++ D GRK ++ D +
Sbjct: 33 KQNGGGKRKRWTGDKGRKIYEWDSQ 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,050,667
Number of Sequences: 62578
Number of extensions: 371160
Number of successful extensions: 718
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 21
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)