BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7694
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1RMR5|TILB_BOVIN Protein TILB homolog OS=Bos taurus GN=LRRC6 PE=2 SV=1
Length = 472
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 101/173 (58%), Gaps = 9/173 (5%)
Query: 52 SPESRIYMSRLNQAIHEKQNGGGEKQNGDQDGGRKFFKQDGRPLNMNQANIDFRLENE-- 109
+PESR+ R + Q EK+ + R +DGR LN+N+ +DF L+++
Sbjct: 261 TPESRLETLRHMEKQRRDQERLSEKKKKVK-PPRMLVTEDGRALNVNEPKLDFTLKDDEK 319
Query: 110 RDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSYAQRSEATRH 169
R++ VL + VYRY+DTSL+DVDVQP YVRV +K K QL L V D S+A+RS+ T H
Sbjct: 320 RNQIVLDLAVYRYMDTSLIDVDVQPTYVRVMVKGKPFQLILPAEVKPDSSFAKRSQTTGH 379
Query: 170 LVVTMPKESGRAVLGQNETVKKTSPKKDTPNQKSNPDQPPVSNQREYLEIGKS 222
LVV MPK G ++G T K P K TP+ S+ +Q S Q E LE+ S
Sbjct: 380 LVVCMPK-VGEVIIGCQRTSK---PVKSTPD--SSKEQTSKSQQMERLEVDPS 426
>sp|Q9VR52|TILB_DROME Protein TILB OS=Drosophila melanogaster GN=tilB PE=1 SV=1
Length = 395
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 38 QQDIDTINQSTTDNSPESRIYMSR---LNQAIHEKQNGGGEKQNGDQDGGRKFFKQDGRP 94
++ I Q+ +++ PE R ++R L + HE ++ + R F GRP
Sbjct: 205 EERIKAFWQAKSEHCPEIRTEIARQHRLGRERHETKSPLDPLK-----PQRNLFAPCGRP 259
Query: 95 LNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTV 154
N+NQA + F+ +E D Y+L + VYR+LDTSL+DVDVQ Y RVT+K K+ Q+A + V
Sbjct: 260 YNLNQAKLPFKFRDEADHYLLQLEVYRHLDTSLIDVDVQTTYTRVTVKKKIFQIAYSEEV 319
Query: 155 LTDKSYAQRSEATRHLVVTMPKESGRAVLGQNE-TVKKTSPKKD--TPNQKSNPDQPPVS 211
D+S QRS+ T HLVV + K L NE + K SP K P D P
Sbjct: 320 KPDESTVQRSQITGHLVVNLKK------LKVNELLIAKKSPTKSPAAPFDAGKKDGKP-- 371
Query: 212 NQREYLEIGKSIHYENMDFSQIYANSELPAL 242
++ H +D S I A +LP L
Sbjct: 372 --------EEAFHGGVVDISNICAPEDLPDL 394
>sp|Q86X45|TILB_HUMAN Protein TILB homolog OS=Homo sapiens GN=LRRC6 PE=1 SV=3
Length = 466
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 85 RKFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNK 144
R +DG+ LN+N+ IDF L++ + +L + VYRY+DTSL+DVDVQP YVRV IK K
Sbjct: 289 RTLITEDGKALNVNEPKIDFSLKDNEKQIILDLAVYRYMDTSLIDVDVQPTYVRVMIKGK 348
Query: 145 VLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESGRAVLGQNETVKKTSPKKDTPNQKSN 204
QL L V D S A+RS+ T HLV+ MPK G + G K D +++N
Sbjct: 349 PFQLVLPAEVKPDSSSAKRSQTTGHLVICMPK-VGEVITGGQRAFKSMKTTSDRSREQTN 407
Query: 205 PDQPPVSNQREYLEIGKSIH 224
S E LE+ S H
Sbjct: 408 TR----SKHMEKLEVDPSKH 423
>sp|Q4R3F0|TILB_MACFA Protein TILB homolog OS=Macaca fascicularis GN=LRCC6 PE=2 SV=1
Length = 466
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 52 SPESRIYMSRLNQAIHEKQNGGGEKQNGDQDGGRKFFKQDGRPLNMNQANIDFRLENERD 111
+PESR+ R + + Q E++ + R +DG+ LN+N+ IDF L++
Sbjct: 257 TPESRLETLRHMEKQRKNQEKLSERKKKVK-PPRTLITEDGKALNVNEPKIDFSLKDNEK 315
Query: 112 RYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSYAQRSEATRHLV 171
+ +L + VYRY+DTSL++VDVQP YVRV IK K QL L V D S A+RS+ T HLV
Sbjct: 316 QIILDLAVYRYMDTSLINVDVQPTYVRVMIKGKPFQLVLPAEVKPDSSSAKRSQTTGHLV 375
Query: 172 VTMPKESGRAVLG 184
+ MPK G + G
Sbjct: 376 ICMPK-VGEVITG 387
>sp|B3DH20|TILB_DANRE Protein TILB homolog OS=Danio rerio GN=lrrc6 PE=1 SV=1
Length = 440
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 83/136 (61%), Gaps = 6/136 (4%)
Query: 85 RKFFKQDGRPLNMNQANIDFRL-ENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKN 143
R DGR LN+N+ +DF L E+E + +L +HVYR++D+SLLDVDVQP YVRVT+K
Sbjct: 264 RTLITPDGRVLNVNEPKLDFSLFEDENNCLLLDLHVYRHMDSSLLDVDVQPMYVRVTVKG 323
Query: 144 KVLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESGRAVLGQNETVKKTSPKKDTPNQKS 203
KV QL L V D S AQRS+ T HL++ +P + V + T++ TS + N+K
Sbjct: 324 KVFQLVLPAEVKPDSSSAQRSQTTGHLLLILPL-ANEDVKPKKRTIRPTSVTSNQNNKKD 382
Query: 204 NPDQPPVSNQREYLEI 219
P +RE LE+
Sbjct: 383 TRAAP----RRELLEV 394
>sp|O88978|TILB_MOUSE Protein TILB homolog OS=Mus musculus GN=Lrrc6 PE=1 SV=1
Length = 473
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 52 SPESRIYMSRLNQAIHEKQNGGGEKQNGDQDGGRKFFKQDGRPLNMNQANIDFRLENER- 110
+PESR+ R + + Q+ EK+ + R +DG+ LN+N+A +DF L+++
Sbjct: 261 TPESRLETLRHMEKQRKAQDKLSEKKKKAK-PPRTLITEDGKVLNVNEAKLDFSLKDDEK 319
Query: 111 -DRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSYAQRSEATRH 169
++ +L + VYRY+DTSL++VDVQP YVRV +K K QLAL V D+S A+RS+ T H
Sbjct: 320 HNQIILDLAVYRYMDTSLIEVDVQPTYVRVMVKGKPFQLALSTEVQPDRSSAKRSQTTGH 379
Query: 170 LVVTMPKESGRAVLGQNETVKKTSPKKDTPNQKSNPDQPPVSNQREYLEIGKSIH 224
L++ MPK G + G T + +++NP + Q E LE+ S H
Sbjct: 380 LLICMPK-VGEMITGGQRTPTSVKTTSTSSREQTNPRK----KQIERLEVDPSKH 429
>sp|Q28FY0|TILB_XENTR Protein TILB homolog OS=Xenopus tropicalis GN=lrrc6 PE=2 SV=1
Length = 470
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 80/128 (62%), Gaps = 5/128 (3%)
Query: 52 SPESRIYMSR-LNQAIHEKQNGGGEKQNGDQDGGRKFFKQDGRPLNMNQANIDFRL--EN 108
+PESR+ R L + K+N E+ + R +GR LN+N++ +DF L +
Sbjct: 259 TPESRLETHRYLEEKRKSKENRSEEELK--KKPPRTLITAEGRVLNVNESKLDFSLVDDE 316
Query: 109 ERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSYAQRSEATR 168
E +++VL + +YR+LDTSLLDVDVQP Y++V +K K QL L V D S A+RS+ T
Sbjct: 317 ENNQFVLDLAIYRHLDTSLLDVDVQPGYIKVLVKEKPFQLVLPAEVKPDSSAAKRSQTTG 376
Query: 169 HLVVTMPK 176
HLVVTMPK
Sbjct: 377 HLVVTMPK 384
>sp|Q9NJE9|TILB_TRYBB Protein TILB homolog OS=Trypanosoma brucei brucei GN=lrrc6 PE=3
SV=1
Length = 383
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 88 FKQDGRPLNMNQANIDFRLENERD---RYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNK 144
+ GR L N+ + F L+ E D VLTV V R+L T+L+DV V+ NY+RV +K K
Sbjct: 260 IAKHGRLLLRNEPKLPFTLDEEADDGEAVVLTVKVPRFLSTTLIDVQVEVNYIRVFVKEK 319
Query: 145 VLQLALDDTVLTDKSYAQRSEATRHLVVTMP 175
++Q+ L V QRS L + +P
Sbjct: 320 LIQVPLSQEVAPSGVNVQRSSVNGELRIRIP 350
>sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream virus (isolate Blicca
bjoerkna L./Germany/DF24/00) GN=rep PE=1 SV=1
Length = 6872
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 156 TDKSYAQRSEATRHLVVTMPKESGRAVLGQNETVKKTSPKKDTPNQKSNPDQPPVSNQRE 215
T S+++R ++T ++ P+ + G ++VK T+PK +TP++ P VS ++
Sbjct: 1212 TPDSWSERYDSTSNI----PEVFNQLSFGSTDSVKITTPKTETPDEPQQPTVETVSAAQQ 1267
Query: 216 YLEIGKSIHYENMDFSQIYANSELPALEL 244
L+I ++ D +Q+ SELP L
Sbjct: 1268 LLQIVQT---ATPDIAQLM--SELPPYRL 1291
>sp|Q008X5|R1A_WBV24 Replicase polyprotein 1a OS=White bream virus (isolate Blicca
bjoerkna L./Germany/DF24/00) GN=1a PE=1 SV=1
Length = 4555
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 156 TDKSYAQRSEATRHLVVTMPKESGRAVLGQNETVKKTSPKKDTPNQKSNPDQPPVSNQRE 215
T S+++R ++T ++ P+ + G ++VK T+PK +TP++ P VS ++
Sbjct: 1212 TPDSWSERYDSTSNI----PEVFNQLSFGSTDSVKITTPKTETPDEPQQPTVETVSAAQQ 1267
Query: 216 YLEIGKSIHYENMDFSQIYANSELPALEL 244
L+I + D +Q+ SELP L
Sbjct: 1268 LLQI---VQTATPDIAQLM--SELPPYRL 1291
>sp|A6QYC6|DUS3_AJECN tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Ajellomyces
capsulata (strain NAm1 / WU24) GN=DUS3 PE=3 SV=1
Length = 741
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 35 PITQQDIDTINQSTTDNSPESRIYMSRLNQAIHEKQNGGGEKQNG--DQDGGRKFFKQDG 92
P+ ++ + ++QST SP + A H +++GGG KQ G ++ GG+ + G
Sbjct: 68 PVKKEYLIEVSQSTGQASPRAIADDDAAEAAKHHEKDGGGAKQKGRREKKGGQNIKRTFG 127
Query: 93 RPLNMNQ 99
R + Q
Sbjct: 128 RSQDEKQ 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,197,282
Number of Sequences: 539616
Number of extensions: 5083251
Number of successful extensions: 9940
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9909
Number of HSP's gapped (non-prelim): 39
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)