Query psy7694
Match_columns 317
No_of_seqs 98 out of 100
Neff 3.3
Searched_HMMs 46136
Date Sat Aug 17 01:04:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04969 CS: CS domain; Inter 98.1 3.1E-05 6.6E-10 56.6 8.3 72 103-176 2-79 (79)
2 PF08190 PIH1: pre-RNA process 98.0 1.4E-05 3E-10 73.9 7.4 67 109-175 259-327 (328)
3 cd06463 p23_like Proteins cont 98.0 3.6E-05 7.9E-10 56.3 7.3 69 108-179 3-76 (84)
4 cd06469 p23_DYX1C1_like p23_li 97.8 9.2E-05 2E-09 55.3 7.4 69 108-179 3-71 (78)
5 cd00298 ACD_sHsps_p23-like Thi 97.8 6.4E-05 1.4E-09 53.1 5.9 66 108-176 3-80 (80)
6 cd06467 p23_NUDC_like p23_like 97.2 0.0018 3.8E-08 49.2 7.4 75 104-179 1-77 (85)
7 PF00011 HSP20: Hsp20/alpha cr 97.0 0.0038 8.2E-08 48.9 7.5 71 107-180 3-91 (102)
8 cd06464 ACD_sHsps-like Alpha-c 96.9 0.003 6.5E-08 47.0 5.9 66 108-176 4-88 (88)
9 cd06494 p23_NUDCD2_like p23-li 96.7 0.007 1.5E-07 49.0 7.3 73 105-179 9-83 (93)
10 cd06465 p23_hB-ind1_like p23_l 96.7 0.009 1.9E-07 48.1 7.7 70 104-178 3-78 (108)
11 cd06466 p23_CS_SGT1_like p23_l 96.6 0.0087 1.9E-07 45.0 6.9 69 108-179 4-77 (84)
12 cd06493 p23_NUDCD1_like p23_NU 96.6 0.01 2.2E-07 46.1 7.4 74 105-180 2-78 (85)
13 cd06468 p23_CacyBP p23_like do 96.5 0.017 3.7E-07 44.7 8.1 74 104-179 4-85 (92)
14 cd06492 p23_mNUDC_like p23-lik 96.3 0.023 5E-07 45.1 7.5 74 105-180 2-80 (87)
15 cd06472 ACD_ScHsp26_like Alpha 96.0 0.016 3.5E-07 45.4 5.5 66 106-176 4-92 (92)
16 COG0071 IbpA Molecular chapero 96.0 0.034 7.3E-07 47.3 7.8 92 86-180 24-136 (146)
17 cd06471 ACD_LpsHSP_like Group 95.7 0.036 7.8E-07 43.2 6.3 67 106-176 5-93 (93)
18 cd06489 p23_CS_hSgt1_like p23_ 95.7 0.063 1.4E-06 41.2 7.4 68 109-179 5-77 (84)
19 cd06497 ACD_alphaA-crystallin_ 95.5 0.035 7.6E-07 43.9 5.5 68 107-176 6-86 (86)
20 cd06488 p23_melusin_like p23_l 94.9 0.17 3.6E-06 39.7 7.7 73 104-179 3-80 (87)
21 cd06526 metazoan_ACD Alpha-cry 94.7 0.09 2E-06 40.6 5.7 66 109-176 5-83 (83)
22 cd06478 ACD_HspB4-5-6 Alpha-cr 93.5 0.29 6.4E-06 38.3 6.4 67 107-176 3-83 (83)
23 cd06476 ACD_HspB2_like Alpha c 93.0 0.28 6.1E-06 38.8 5.7 66 109-176 5-83 (83)
24 cd06490 p23_NCB5OR p23_like do 92.8 0.88 1.9E-05 35.9 8.2 71 109-180 6-81 (87)
25 cd06479 ACD_HspB7_like Alpha c 92.1 0.4 8.8E-06 38.0 5.5 68 107-176 4-81 (81)
26 cd06481 ACD_HspB9_like Alpha c 91.8 0.55 1.2E-05 37.2 5.9 66 108-176 4-87 (87)
27 cd06495 p23_NUDCD3_like p23-li 91.6 1 2.2E-05 37.3 7.6 75 103-179 6-87 (102)
28 cd06498 ACD_alphaB-crystallin_ 90.9 0.9 2E-05 35.9 6.3 67 108-177 4-84 (84)
29 cd06470 ACD_IbpA-B_like Alpha- 90.9 1.2 2.5E-05 35.1 7.0 66 106-176 5-90 (90)
30 PRK10743 heat shock protein Ib 90.9 0.97 2.1E-05 39.1 7.0 70 104-178 37-125 (137)
31 PLN03088 SGT1, suppressor of 90.7 0.98 2.1E-05 43.6 7.6 79 99-180 154-237 (356)
32 PRK11597 heat shock chaperone 88.1 1.7 3.7E-05 38.0 6.5 70 104-178 35-123 (142)
33 cd00237 p23 p23 binds heat sho 87.4 3.5 7.5E-05 34.2 7.6 66 110-180 10-80 (106)
34 cd06475 ACD_HspB1_like Alpha c 83.3 4.3 9.4E-05 32.1 6.1 66 107-175 6-85 (86)
35 KOG0531|consensus 81.5 0.13 2.9E-06 49.8 -3.7 140 40-180 250-390 (414)
36 cd06477 ACD_HspB3_Like Alpha c 72.1 14 0.0003 29.5 6.0 65 109-175 5-82 (83)
37 KOG2265|consensus 65.2 9.1 0.0002 35.4 4.1 58 103-160 20-80 (179)
38 cd06482 ACD_HspB10 Alpha cryst 62.8 15 0.00032 29.6 4.4 33 109-142 6-38 (87)
39 KOG0710|consensus 55.8 24 0.00053 32.0 5.1 80 97-180 80-183 (196)
40 PF10584 Proteasome_A_N: Prote 49.6 8.5 0.00018 24.8 0.9 14 84-97 4-17 (23)
41 PF01372 Melittin: Melittin; 44.3 7.2 0.00016 25.9 -0.1 12 238-251 12-23 (26)
42 cd06480 ACD_HspB8_like Alpha-c 38.2 1.1E+02 0.0024 25.0 5.9 64 109-175 13-90 (91)
43 PF01119 DNA_mis_repair: DNA m 30.6 42 0.00091 27.5 2.3 26 112-141 75-100 (119)
44 KOG3247|consensus 26.4 38 0.00082 35.3 1.7 78 103-181 5-83 (466)
45 PF09814 HECT_2: HECT-like Ubi 23.7 3E+02 0.0065 26.2 7.1 67 112-178 8-77 (354)
46 cd03483 MutL_Trans_MLH1 MutL_T 21.6 42 0.0009 28.1 0.8 21 122-142 89-109 (127)
47 PF09430 DUF2012: Protein of u 20.7 1.5E+02 0.0032 24.9 3.9 25 102-126 30-55 (123)
No 1
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.06 E-value=3.1e-05 Score=56.61 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=60.7
Q ss_pred ceeeccCCCeEEEEeec-cccccccceeecccCcEEEEEEc-C----eeeeeecCccccCCCcceeeeeccceEEEEeec
Q psy7694 103 DFRLENERDRYVLTVHV-YRYLDTSLLDVDVQPNYVRVTIK-N----KVLQLALDDTVLTDKSYAQRSEATRHLVVTMPK 176 (317)
Q Consensus 103 ~F~L~Ee~~~ivLdl~V-yKyLDTSLIDVDVQPtYVRV~IK-G----KlfQL~LpeEVkpD~S~aqRSqTTGhLvItMPK 176 (317)
.|.+.+..+.+.|.|.+ +..++-+-|+|++.+++++|.++ | -.+.+.|..+|.||.|+...... .|.|+|.|
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~--~i~i~L~K 79 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDN--KIEITLKK 79 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETT--EEEEEEEB
T ss_pred CeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECC--EEEEEEEC
Confidence 36677778899999999 77789999999999999999998 4 37889999999999998866554 99999987
No 2
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.03 E-value=1.4e-05 Score=73.88 Aligned_cols=67 Identities=24% Similarity=0.304 Sum_probs=64.5
Q ss_pred CCCeEEEEeeccccccccceeecccCcEEEEEEcC--eeeeeecCccccCCCcceeeeeccceEEEEee
Q psy7694 109 ERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKN--KVLQLALDDTVLTDKSYAQRSEATRHLVVTMP 175 (317)
Q Consensus 109 e~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKG--KlfQL~LpeEVkpD~S~aqRSqTTGhLvItMP 175 (317)
.+..+++.|.+|..-+.+-||+||.++++.|.+.+ --|.|.||..|.+|.++|+-.+.|+.|.||||
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 36899999999999899999999999999999999 78999999999999999999999999999999
No 3
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=97.97 E-value=3.6e-05 Score=56.30 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=60.1
Q ss_pred cCCCeEEEEeeccccccccceeecccCcEEEEEEcC---e--eeeeecCccccCCCcceeeeeccceEEEEeeccCc
Q psy7694 108 NERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKN---K--VLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESG 179 (317)
Q Consensus 108 Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKG---K--lfQL~LpeEVkpD~S~aqRSqTTGhLvItMPKv~~ 179 (317)
+.++.+.|.|.+|.-. -+-|+|++.++.++|.+++ + .+.+.|+.+|.||+|++.-. .|.|.|+|+|..+
T Consensus 3 Q~~~~v~i~v~~~~~~-~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~--~~~l~i~L~K~~~ 76 (84)
T cd06463 3 QTLDEVTITIPLKDVT-KKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVE--DRKIEITLKKKEP 76 (84)
T ss_pred ccccEEEEEEEcCCCC-ccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEe--CCEEEEEEEECCC
Confidence 3567899999999754 8899999999999999985 3 78889999999999888874 4999999999886
No 4
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=97.83 E-value=9.2e-05 Score=55.33 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=57.4
Q ss_pred cCCCeEEEEeeccccccccceeecccCcEEEEEEcCeeeeeecCccccCCCcceeeeeccceEEEEeeccCc
Q psy7694 108 NERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESG 179 (317)
Q Consensus 108 Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGKlfQL~LpeEVkpD~S~aqRSqTTGhLvItMPKv~~ 179 (317)
+.++.+.+.+.+|- +.-.-|+|.+.+++++|..+.-.+.+.|+.+|.||+|+++- ..|-|.|+|||..+
T Consensus 3 Qt~~~v~i~i~~p~-v~~~~v~v~~~~~~l~i~~~~~~~~~~l~~~I~~e~~~~~~--~~~~l~i~L~K~~~ 71 (78)
T cd06469 3 QTDEDVKISVPLKG-VKTSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKI--GNGVLVFTLVKKEP 71 (78)
T ss_pred ccCCEEEEEEEeCC-CccccceEEEecCEEEEcCCCEEEEEeCcccccccccEEEE--eCCEEEEEEEeCCC
Confidence 35678999999994 66777888899998887775566788999999999999985 45899999999875
No 5
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=97.80 E-value=6.4e-05 Score=53.12 Aligned_cols=66 Identities=26% Similarity=0.299 Sum_probs=56.9
Q ss_pred cCCCeEEEEeeccccccccceeecccCcEEEEEEcCe------------eeeeecCccccCCCcceeeeeccceEEEEee
Q psy7694 108 NERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNK------------VLQLALDDTVLTDKSYAQRSEATRHLVVTMP 175 (317)
Q Consensus 108 Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGK------------lfQL~LpeEVkpD~S~aqRSqTTGhLvItMP 175 (317)
+.++.|.|.|.+|.+. -.-|+|++.++.+.|.++.. .+.+.||.+|.++.+++.-.. |.|.|+||
T Consensus 3 q~~~~v~i~i~~~~~~-~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~--~~l~i~l~ 79 (80)
T cd00298 3 QTDDEVVVTVDLPGVK-KEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLEN--GVLEITLP 79 (80)
T ss_pred EcCCEEEEEEECCCCC-HHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEEC--CEEEEEEc
Confidence 3457999999999974 77889999999999998754 678889999999988888776 99999999
Q ss_pred c
Q psy7694 176 K 176 (317)
Q Consensus 176 K 176 (317)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 6
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.22 E-value=0.0018 Score=49.16 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=62.9
Q ss_pred eeeccCCCeEEEEeeccccccccceeecccCcEEEEEEcC--eeeeeecCccccCCCcceeeeeccceEEEEeeccCc
Q psy7694 104 FRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKN--KVLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESG 179 (317)
Q Consensus 104 F~L~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKG--KlfQL~LpeEVkpD~S~aqRSqTTGhLvItMPKv~~ 179 (317)
|.+.+..+.+.+.+.+|+-.+=.=|+|++.++++.|.++| -++...|..+|.||.|+-.... ...|.|+++|..+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~s~w~~~~-~~~v~i~L~K~~~ 77 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTWTLED-GKLLEITLEKRNE 77 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcCCEEEEeC-CCEEEEEEEECCC
Confidence 4566667889999999988888899999999999999994 5566789999999999876433 2789999999986
No 7
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=96.99 E-value=0.0038 Score=48.87 Aligned_cols=71 Identities=24% Similarity=0.379 Sum_probs=52.7
Q ss_pred ccCCCeEEEEeeccccccccceeecccCcEEEEEEcCe------------------eeeeecCccccCCCcceeeeeccc
Q psy7694 107 ENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNK------------------VLQLALDDTVLTDKSYAQRSEATR 168 (317)
Q Consensus 107 ~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGK------------------lfQL~LpeEVkpD~S~aqRSqTTG 168 (317)
.+++++|.+.+.+|-| +-.=|+|.++-+.+.|.-+.+ --.+.||+.|.+++.+|.= -.|
T Consensus 3 ~e~~~~~~i~~~lpG~-~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~--~~G 79 (102)
T PF00011_consen 3 KEDEDEYIIKVDLPGF-DKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY--ENG 79 (102)
T ss_dssp EESSSEEEEEEE-TTS--GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE--TTS
T ss_pred EECCCEEEEEEECCCC-ChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe--cCC
Confidence 3467899999999976 678899999988755544433 1178899999888888876 999
Q ss_pred eEEEEeeccCcc
Q psy7694 169 HLVVTMPKESGR 180 (317)
Q Consensus 169 hLvItMPKv~~~ 180 (317)
.|.|+|||....
T Consensus 80 vL~I~~pk~~~~ 91 (102)
T PF00011_consen 80 VLTITIPKKEEE 91 (102)
T ss_dssp EEEEEEEBSSSC
T ss_pred EEEEEEEccccc
Confidence 999999999866
No 8
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.88 E-value=0.003 Score=46.98 Aligned_cols=66 Identities=21% Similarity=0.328 Sum_probs=54.3
Q ss_pred cCCCeEEEEeeccccccccceeecccCcEEEEEEcCe-------------------eeeeecCccccCCCcceeeeeccc
Q psy7694 108 NERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNK-------------------VLQLALDDTVLTDKSYAQRSEATR 168 (317)
Q Consensus 108 Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGK-------------------lfQL~LpeEVkpD~S~aqRSqTTG 168 (317)
|+++.|++.+.+|-| +-.=|+|.|..+++.|..+-+ --.+.||..|.++..+|.-+- |
T Consensus 4 e~~~~~~i~~~lpg~-~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~--G 80 (88)
T cd06464 4 ETDDAYVVEADLPGF-KKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN--G 80 (88)
T ss_pred EcCCEEEEEEECCCC-CHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC--C
Confidence 456799999999995 677899999999988874432 234679999999988888877 9
Q ss_pred eEEEEeec
Q psy7694 169 HLVVTMPK 176 (317)
Q Consensus 169 hLvItMPK 176 (317)
-|.|++||
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99999997
No 9
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.73 E-value=0.007 Score=49.03 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=61.1
Q ss_pred eeccCCCeEEEEeeccccccccceeecccCcEEEEEEcCee-eeeecCccccCCCcceeeeeccce-EEEEeeccCc
Q psy7694 105 RLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV-LQLALDDTVLTDKSYAQRSEATRH-LVVTMPKESG 179 (317)
Q Consensus 105 ~L~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGKl-fQL~LpeEVkpD~S~aqRSqTTGh-LvItMPKv~~ 179 (317)
.+....+.+.+.+.+|+-....-++|++.|++++|.++|.. +.=.|...|++|.|+=. -.-|. |.|+|.|++.
T Consensus 9 ~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~~l~G~L~~~I~~destWt--led~k~l~I~L~K~~~ 83 (93)
T cd06494 9 CWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQEVLKGKLFDSVVADECTWT--LEDRKLIRIVLTKSNR 83 (93)
T ss_pred EEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEEEEcCcccCccCcccCEEE--EECCcEEEEEEEeCCC
Confidence 34445678999999999999999999999999999999985 44479999999999865 33466 7999999864
No 10
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=96.69 E-value=0.009 Score=48.13 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=59.8
Q ss_pred eeeccCCCeEEEEeeccccccccceeecccCcEEEEEEcCe------eeeeecCccccCCCcceeeeeccceEEEEeecc
Q psy7694 104 FRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNK------VLQLALDDTVLTDKSYAQRSEATRHLVVTMPKE 177 (317)
Q Consensus 104 F~L~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGK------lfQL~LpeEVkpD~S~aqRSqTTGhLvItMPKv 177 (317)
|.+....+.+.+.|.++.- .-+.|++.++.|.|.++|. .|.+.|..+|.||.|+.+. +.+.|.|+|.|+
T Consensus 3 ~~W~Qt~~~V~i~i~~~~~---~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v--~~~kveI~L~K~ 77 (108)
T cd06465 3 VLWAQRSDVVYLTIELPDA---KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKV--TGRQIEFVLRKK 77 (108)
T ss_pred eeeeECCCEEEEEEEeCCC---CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEe--cCCeEEEEEEEC
Confidence 5566677899999998864 6689999999999998754 7888999999999999985 348899999999
Q ss_pred C
Q psy7694 178 S 178 (317)
Q Consensus 178 ~ 178 (317)
.
T Consensus 78 ~ 78 (108)
T cd06465 78 E 78 (108)
T ss_pred C
Confidence 8
No 11
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=96.64 E-value=0.0087 Score=45.02 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=55.7
Q ss_pred cCCCeEEEEeeccccccccceeecccCcEEEEEEc---C--eeeeeecCccccCCCcceeeeeccceEEEEeeccCc
Q psy7694 108 NERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIK---N--KVLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESG 179 (317)
Q Consensus 108 Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IK---G--KlfQL~LpeEVkpD~S~aqRSqTTGhLvItMPKv~~ 179 (317)
+.++.+.|.|.++. +.-.-|+|++.++.+++.++ | -.+.+.|..+|.||.|++. -+.|.|.|+|+|..+
T Consensus 4 Qt~~~v~i~v~~~~-~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~--~~~~~vei~L~K~~~ 77 (84)
T cd06466 4 QTDTSVTVTIYAKN-VDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVS--VLPTKVEITLKKAEP 77 (84)
T ss_pred ccCCEEEEEEEECC-CCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEE--EeCeEEEEEEEcCCC
Confidence 35678999998883 44578999999999999886 3 3467789999999977765 566889999999875
No 12
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=96.64 E-value=0.01 Score=46.14 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=60.2
Q ss_pred eeccCCCeEEEEeeccccccccceeecccCcEEEEEEcC--eeeeeecCccccCCCcceeeeeccc-eEEEEeeccCcc
Q psy7694 105 RLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKN--KVLQLALDDTVLTDKSYAQRSEATR-HLVVTMPKESGR 180 (317)
Q Consensus 105 ~L~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKG--KlfQL~LpeEVkpD~S~aqRSqTTG-hLvItMPKv~~~ 180 (317)
.+....+.+.+.+.+|+-..-.=|+|++.|+.+.|.++| .++...|...|.||.|+-.- ..| .|.|+|.|..+.
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~Stw~i--~~~~~l~i~L~K~~~~ 78 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWII--KENKSLEVSLIKKDEG 78 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccCcEEEE--eCCCEEEEEEEECCCC
Confidence 445567889999999988888899999999999999985 36677899999999998532 123 599999998754
No 13
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=96.55 E-value=0.017 Score=44.74 Aligned_cols=74 Identities=11% Similarity=0.196 Sum_probs=60.3
Q ss_pred eeeccCCCeEEEEeecccccc--ccceeecccCcEEEEEEcC---e--eeeee-cCccccCCCcceeeeeccceEEEEee
Q psy7694 104 FRLENERDRYVLTVHVYRYLD--TSLLDVDVQPNYVRVTIKN---K--VLQLA-LDDTVLTDKSYAQRSEATRHLVVTMP 175 (317)
Q Consensus 104 F~L~Ee~~~ivLdl~VyKyLD--TSLIDVDVQPtYVRV~IKG---K--lfQL~-LpeEVkpD~S~aqRSqTTGhLvItMP 175 (317)
|.+.+..+.+.+.|.++.--. ..=+.|+..++.+.|.++| + .|.+. |-.+|.||.|+..-.. +.+.|+|.
T Consensus 4 y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~--~ki~i~L~ 81 (92)
T cd06468 4 YAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKT--DRIVITLA 81 (92)
T ss_pred eeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeC--CEEEEEEE
Confidence 567777889999998875532 4668999999999999975 3 56675 9999999999999644 77999999
Q ss_pred ccCc
Q psy7694 176 KESG 179 (317)
Q Consensus 176 Kv~~ 179 (317)
|..+
T Consensus 82 K~~~ 85 (92)
T cd06468 82 KKKE 85 (92)
T ss_pred eCCC
Confidence 9985
No 14
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.26 E-value=0.023 Score=45.15 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=59.8
Q ss_pred eeccCCCeEEEEeecccc--ccccceeecccCcEEEEEEcCe--eeeeecCccccCCCcceeeeeccc-eEEEEeeccCc
Q psy7694 105 RLENERDRYVLTVHVYRY--LDTSLLDVDVQPNYVRVTIKNK--VLQLALDDTVLTDKSYAQRSEATR-HLVVTMPKESG 179 (317)
Q Consensus 105 ~L~Ee~~~ivLdl~VyKy--LDTSLIDVDVQPtYVRV~IKGK--lfQL~LpeEVkpD~S~aqRSqTTG-hLvItMPKv~~ 179 (317)
.+....+.+.+.|.+|.- .+..=|+|++.++.+.|.+||+ ++.-.|...|.+|.|+=. --.| .|.|+|-|++.
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~des~Wt--led~~~l~i~L~K~~~ 79 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESSWL--IEDGKVVTVNLEKINK 79 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccccEEE--EeCCCEEEEEEEECCC
Confidence 344445678888888765 7889999999999999999996 788899999999998744 2234 79999999875
Q ss_pred c
Q psy7694 180 R 180 (317)
Q Consensus 180 ~ 180 (317)
.
T Consensus 80 ~ 80 (87)
T cd06492 80 M 80 (87)
T ss_pred C
Confidence 4
No 15
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=96.02 E-value=0.016 Score=45.43 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=49.7
Q ss_pred eccCCCeEEEEeeccccccccceeecccCc-EEEEEEcCe--------------------ee--eeecCccccCCCccee
Q psy7694 106 LENERDRYVLTVHVYRYLDTSLLDVDVQPN-YVRVTIKNK--------------------VL--QLALDDTVLTDKSYAQ 162 (317)
Q Consensus 106 L~Ee~~~ivLdl~VyKyLDTSLIDVDVQPt-YVRV~IKGK--------------------lf--QL~LpeEVkpD~S~aq 162 (317)
+.|.++.|+|.+++|-+ +=.=|+|+|.-+ .+. |+|+ -| .+.||+.|.+++.+|
T Consensus 4 v~E~~~~~~i~~~lPGv-~~edi~i~v~~~~~L~--I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A- 79 (92)
T cd06472 4 WKETPEAHVFKADVPGV-KKEDVKVEVEDGRVLR--ISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKA- 79 (92)
T ss_pred EEEcCCeEEEEEECCCC-ChHhEEEEEeCCCEEE--EEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEE-
Confidence 44567899999999997 677888888764 433 4442 12 358999998887777
Q ss_pred eeeccceEEEEeec
Q psy7694 163 RSEATRHLVVTMPK 176 (317)
Q Consensus 163 RSqTTGhLvItMPK 176 (317)
+---|-|.|+|||
T Consensus 80 -~~~nGvL~I~lPK 92 (92)
T cd06472 80 -FLENGVLTVTVPK 92 (92)
T ss_pred -EEECCEEEEEecC
Confidence 4557999999998
No 16
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.034 Score=47.33 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=65.4
Q ss_pred cccccCCCcccccC-CCcceeeccCCCeEEEEeeccccccccceeecccCcEEEEEEcCee-------------------
Q psy7694 86 KFFKQDGRPLNMNQ-ANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV------------------- 145 (317)
Q Consensus 86 ~Lf~~dGr~ln~NE-gK~~F~L~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGKl------------------- 145 (317)
++|...|....-+. .--+..+.+.++.|++.++||-+ +-.=|+|.++.+.+.|..+-+-
T Consensus 24 ~~~~~~~~~~~~~~~~~P~vdi~e~~~~~~I~~elPG~-~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f 102 (146)
T COG0071 24 RLFREFGNLPESRPTGTPPVDIEETDDEYRITAELPGV-DKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEF 102 (146)
T ss_pred hhhhhhhcccccccCCCCcEEEEEcCCEEEEEEEcCCC-ChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeE
Confidence 34444454444432 23334445556699999999986 5888999999997555544332
Q ss_pred -eeeecCccccCCCcceeeeeccceEEEEeeccCcc
Q psy7694 146 -LQLALDDTVLTDKSYAQRSEATRHLVVTMPKESGR 180 (317)
Q Consensus 146 -fQL~LpeEVkpD~S~aqRSqTTGhLvItMPKv~~~ 180 (317)
-++.||+.|.++. +.=+--.|-|.|++||..+.
T Consensus 103 ~r~~~Lp~~v~~~~--~~A~~~nGvL~I~lpk~~~~ 136 (146)
T COG0071 103 ERTFRLPEKVDPEV--IKAKYKNGLLTVTLPKAEPE 136 (146)
T ss_pred EEEEECcccccccc--eeeEeeCcEEEEEEeccccc
Confidence 4789999999995 44467789999999999876
No 17
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=95.73 E-value=0.036 Score=43.20 Aligned_cols=67 Identities=16% Similarity=0.349 Sum_probs=49.6
Q ss_pred eccCCCeEEEEeeccccccccceeecccCcEEEEEEcCee--------------------ee--eecCccccCCCcceee
Q psy7694 106 LENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV--------------------LQ--LALDDTVLTDKSYAQR 163 (317)
Q Consensus 106 L~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGKl--------------------fQ--L~LpeEVkpD~S~aqR 163 (317)
+.|.++.|+|.+++|- ++-.=|+|+|.-+++.|..+.+. |+ +.|| .|.+|. ++=
T Consensus 5 i~e~~~~~~i~~~lPG-v~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~--i~A 80 (93)
T cd06471 5 IKETDDEYIVEADLPG-FKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEE--IKA 80 (93)
T ss_pred EEEcCCEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHH--CEE
Confidence 3456789999999996 68888999999997776544321 22 5677 566655 444
Q ss_pred eeccceEEEEeec
Q psy7694 164 SEATRHLVVTMPK 176 (317)
Q Consensus 164 SqTTGhLvItMPK 176 (317)
+---|-|.|+|||
T Consensus 81 ~~~dGvL~I~lPK 93 (93)
T cd06471 81 KYENGVLKITLPK 93 (93)
T ss_pred EEECCEEEEEEcC
Confidence 5578999999998
No 18
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=95.67 E-value=0.063 Score=41.20 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=53.7
Q ss_pred CCCeEEEEeeccccccccceeecccCcEEEEEEcC-----eeeeeecCccccCCCcceeeeeccceEEEEeeccCc
Q psy7694 109 ERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKN-----KVLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESG 179 (317)
Q Consensus 109 e~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKG-----KlfQL~LpeEVkpD~S~aqRSqTTGhLvItMPKv~~ 179 (317)
..+.+.|.|.+. -+...-+.|+.+++.++|.+++ -.|.+.|-.+|.|+.|+.+=. .+.+.|+|.|..+
T Consensus 5 ~~~~V~iti~~k-~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~--~~kiei~L~K~~~ 77 (84)
T cd06489 5 TESQVVITILIK-NVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKIL--STKIEIKLKKTEA 77 (84)
T ss_pred cCCEEEEEEEEC-CCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEe--CcEEEEEEEcCCC
Confidence 456788888765 3334778999999999999863 567778999999998888765 5569999999863
No 19
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=95.50 E-value=0.035 Score=43.93 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=50.8
Q ss_pred ccCCCeEEEEeeccccccccceeecccCcEEEEEEcCee------e-------eeecCccccCCCcceeeeeccceEEEE
Q psy7694 107 ENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV------L-------QLALDDTVLTDKSYAQRSEATRHLVVT 173 (317)
Q Consensus 107 ~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGKl------f-------QL~LpeEVkpD~S~aqRSqTTGhLvIt 173 (317)
.++++.|.+.+.+|-|- -.=|+|+|.-+++.|.-+-+. + ++.||+.|.+|..+|.= ..-|.|.|+
T Consensus 6 ~e~~~~~~v~~dlpG~~-~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~-~~dGvL~I~ 83 (86)
T cd06497 6 RSDRDKFTIYLDVKHFS-PEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSL-SADGMLTFS 83 (86)
T ss_pred EEcCCEEEEEEECCCCC-HHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEe-CCCCEEEEE
Confidence 34678999999999875 577899999997655543111 1 68899998888776532 137999999
Q ss_pred eec
Q psy7694 174 MPK 176 (317)
Q Consensus 174 MPK 176 (317)
+||
T Consensus 84 ~PK 86 (86)
T cd06497 84 GPK 86 (86)
T ss_pred ecC
Confidence 998
No 20
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=94.90 E-value=0.17 Score=39.69 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=57.8
Q ss_pred eeeccCCCeEEEEeeccccccccceeecccCcEEEEEEc---Ceee--eeecCccccCCCcceeeeeccceEEEEeeccC
Q psy7694 104 FRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIK---NKVL--QLALDDTVLTDKSYAQRSEATRHLVVTMPKES 178 (317)
Q Consensus 104 F~L~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IK---GKlf--QL~LpeEVkpD~S~aqRSqTTGhLvItMPKv~ 178 (317)
|.+-..++.+.+.|.+ |-.+..-+.|++.++.++|.++ |+.+ .|.|-.+|.|+.|+.+ -+.+.+.|+|.|..
T Consensus 3 ~dW~Qs~~~V~ItI~~-k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~--v~~~kvei~L~K~~ 79 (87)
T cd06488 3 HDWHQTGSHVVVSVYA-KNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVN--MLPTKVEIKLRKAE 79 (87)
T ss_pred ccEeeCCCEEEEEEEE-CcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEE--ecCcEEEEEEEeCC
Confidence 3444567889999977 6788899999999999887664 5545 4578899999987766 68899999999987
Q ss_pred c
Q psy7694 179 G 179 (317)
Q Consensus 179 ~ 179 (317)
+
T Consensus 80 ~ 80 (87)
T cd06488 80 P 80 (87)
T ss_pred C
Confidence 4
No 21
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=94.72 E-value=0.09 Score=40.55 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=50.2
Q ss_pred CCCeEEEEeeccccccccceeecccCcEEEEEEcCee-------------eeeecCccccCCCcceeeeeccceEEEEee
Q psy7694 109 ERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV-------------LQLALDDTVLTDKSYAQRSEATRHLVVTMP 175 (317)
Q Consensus 109 e~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGKl-------------fQL~LpeEVkpD~S~aqRSqTTGhLvItMP 175 (317)
+.+.|+|.+.+|-| .-.=|+|.|..+.+.|.-+-+. -.+.||..|.+++.+|.=+. -|-|.|++|
T Consensus 5 ~~~~~~v~~dlpG~-~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~-~GvL~I~~P 82 (83)
T cd06526 5 DDEKFQVTLDVKGF-KPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSS-DGVLTIEAP 82 (83)
T ss_pred cCeeEEEEEECCCC-CHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCC-CcEEEEEec
Confidence 34689999999985 6788999999987776665221 24789999888877764332 399999999
Q ss_pred c
Q psy7694 176 K 176 (317)
Q Consensus 176 K 176 (317)
|
T Consensus 83 k 83 (83)
T cd06526 83 K 83 (83)
T ss_pred C
Confidence 7
No 22
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=93.50 E-value=0.29 Score=38.31 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=49.8
Q ss_pred ccCCCeEEEEeeccccccccceeecccCcEEEEEEcCee-------------eeeecCccccCCCcceeeee-ccceEEE
Q psy7694 107 ENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV-------------LQLALDDTVLTDKSYAQRSE-ATRHLVV 172 (317)
Q Consensus 107 ~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGKl-------------fQL~LpeEVkpD~S~aqRSq-TTGhLvI 172 (317)
.++++.|++.+.+|-| +-.=|+|+|.-+++.|.-+-.. -++.||+.|.+|+.+| +- ..|-|.|
T Consensus 3 ~~~~~~~~v~~dlpG~-~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A--~~~~dGvL~I 79 (83)
T cd06478 3 RLDKDRFSVNLDVKHF-SPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITS--SLSADGVLTI 79 (83)
T ss_pred eecCceEEEEEECCCC-CHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEE--EECCCCEEEE
Confidence 4467899999999976 5667999999987665543211 2578898887777664 33 3799999
Q ss_pred Eeec
Q psy7694 173 TMPK 176 (317)
Q Consensus 173 tMPK 176 (317)
++||
T Consensus 80 ~~PK 83 (83)
T cd06478 80 SGPR 83 (83)
T ss_pred EecC
Confidence 9998
No 23
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=93.04 E-value=0.28 Score=38.80 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=50.0
Q ss_pred CCCeEEEEeeccccccccceeecccCcEEEEEEcCe--------e-----eeeecCccccCCCcceeeeeccceEEEEee
Q psy7694 109 ERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNK--------V-----LQLALDDTVLTDKSYAQRSEATRHLVVTMP 175 (317)
Q Consensus 109 e~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGK--------l-----fQL~LpeEVkpD~S~aqRSqTTGhLvItMP 175 (317)
+++.|.+.+.||-|- -.=|+|+|.-+++.|.-+.+ . -.+.||+.|.+++.+|.=+ .-|.|.|++|
T Consensus 5 ~~d~y~v~~dlpG~~-~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~-~dGvL~I~~P 82 (83)
T cd06476 5 EDDKYQVFLDVCHFT-PDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLS-HDGILCIQAP 82 (83)
T ss_pred cCCeEEEEEEcCCCC-HHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEec-CCCEEEEEec
Confidence 678999999999876 57899999999766544311 1 1478999998888776422 3799999999
Q ss_pred c
Q psy7694 176 K 176 (317)
Q Consensus 176 K 176 (317)
|
T Consensus 83 r 83 (83)
T cd06476 83 R 83 (83)
T ss_pred C
Confidence 7
No 24
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=92.75 E-value=0.88 Score=35.93 Aligned_cols=71 Identities=20% Similarity=0.139 Sum_probs=56.1
Q ss_pred CCCeEEEEeeccc-cccccceeecccCcEEEEEEc--Ceeeee--ecCccccCCCcceeeeeccceEEEEeeccCcc
Q psy7694 109 ERDRYVLTVHVYR-YLDTSLLDVDVQPNYVRVTIK--NKVLQL--ALDDTVLTDKSYAQRSEATRHLVVTMPKESGR 180 (317)
Q Consensus 109 e~~~ivLdl~VyK-yLDTSLIDVDVQPtYVRV~IK--GKlfQL--~LpeEVkpD~S~aqRSqTTGhLvItMPKv~~~ 180 (317)
.++++++.|.... -++-.-+.|+.+.+-++|.+. |+.+++ .|-.+|.+++ +.+=..++|.+-|+|+|+.+.
T Consensus 6 t~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~e~~ 81 (87)
T cd06490 6 TDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKKEPE 81 (87)
T ss_pred CCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcCCCC
Confidence 4567787776644 678888889999988888875 775655 6778897666 888888899999999998753
No 25
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=92.14 E-value=0.4 Score=37.96 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=51.5
Q ss_pred ccCCCeEEEEeeccccccccceeecccCcEEEEEEcC-----e-----eeeeecCccccCCCcceeeeeccceEEEEeec
Q psy7694 107 ENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKN-----K-----VLQLALDDTVLTDKSYAQRSEATRHLVVTMPK 176 (317)
Q Consensus 107 ~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKG-----K-----lfQL~LpeEVkpD~S~aqRSqTTGhLvItMPK 176 (317)
.|+++.|.+.+.+|-| +=.=|+|.|..+++.|.-.- . .=++.||..|.+|+.+|+= .--|.|.|++|+
T Consensus 4 ~e~~~~~~v~~dlpG~-~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l-~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDF-SPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSL-GEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCC-CHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEe-cCCCEEEEEecC
Confidence 4567899999999955 88889999999977665431 1 1268899999888776531 258999999985
No 26
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=91.75 E-value=0.55 Score=37.24 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=50.0
Q ss_pred cCCCeEEEEeeccccccccceeecccCcEEEEEEcC---------e--------eeeeecCccccCCCcceeeee-ccce
Q psy7694 108 NERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKN---------K--------VLQLALDDTVLTDKSYAQRSE-ATRH 169 (317)
Q Consensus 108 Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKG---------K--------lfQL~LpeEVkpD~S~aqRSq-TTGh 169 (317)
|..+.|++.+.+|-|- ..=|+|.|.-+++.|.-+- . --++.||+.|.+|+.+| +- --|-
T Consensus 4 ~~~d~~~v~~dlpG~~-~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A--~~~~dGv 80 (87)
T cd06481 4 DGKEGFSLKLDVRGFS-PEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTC--SLSPSGH 80 (87)
T ss_pred CccceEEEEEECCCCC-hHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEE--EeCCCce
Confidence 3467899999999885 6678999999988776541 1 12588999988777665 34 5899
Q ss_pred EEEEeec
Q psy7694 170 LVVTMPK 176 (317)
Q Consensus 170 LvItMPK 176 (317)
|.|+||.
T Consensus 81 L~I~~P~ 87 (87)
T cd06481 81 LHIRAPR 87 (87)
T ss_pred EEEEcCC
Confidence 9999994
No 27
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=91.60 E-value=1 Score=37.29 Aligned_cols=75 Identities=15% Similarity=0.267 Sum_probs=59.2
Q ss_pred ceeeccCCCeEEEEeecccc-ccccceeecccCcEEEEEEcC-----eeeeeecCccccCCCcceeeeeccce-EEEEee
Q psy7694 103 DFRLENERDRYVLTVHVYRY-LDTSLLDVDVQPNYVRVTIKN-----KVLQLALDDTVLTDKSYAQRSEATRH-LVVTMP 175 (317)
Q Consensus 103 ~F~L~Ee~~~ivLdl~VyKy-LDTSLIDVDVQPtYVRV~IKG-----KlfQL~LpeEVkpD~S~aqRSqTTGh-LvItMP 175 (317)
.|.+...-+.+.+.+.+|.- .-..-|.|++.|+++.|-++| -++.=.|...|++|.|.=- ---|. |.|+|-
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wt--led~~~l~I~L~ 83 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWS--LEPGKCVLLSLS 83 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEE--EeCCCEEEEEEE
Confidence 36666667789999999987 457889999999999999984 3566669999999998743 22244 899999
Q ss_pred ccCc
Q psy7694 176 KESG 179 (317)
Q Consensus 176 Kv~~ 179 (317)
|.+.
T Consensus 84 K~~~ 87 (102)
T cd06495 84 KCSE 87 (102)
T ss_pred ECCC
Confidence 9864
No 28
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=90.91 E-value=0.9 Score=35.88 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=49.2
Q ss_pred cCCCeEEEEeeccccccccceeecccCcEEEEEEcCee-----------e--eeecCccccCCCcceeeeec-cceEEEE
Q psy7694 108 NERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV-----------L--QLALDDTVLTDKSYAQRSEA-TRHLVVT 173 (317)
Q Consensus 108 Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGKl-----------f--QL~LpeEVkpD~S~aqRSqT-TGhLvIt 173 (317)
++.+.|.+.+.+|-|- -.=|+|+|.-+++.|.-+... | .+.||+.|.+|+.+| +-. -|.|.|+
T Consensus 4 ~~~~~~~v~~dlpG~~-~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A--~~~~dGvL~I~ 80 (84)
T cd06498 4 LEKDKFSVNLDVKHFS-PEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITS--SLSPDGVLTVC 80 (84)
T ss_pred eCCceEEEEEECCCCC-HHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEE--EeCCCCEEEEE
Confidence 4568899999998764 567888888886555443211 2 478999988877765 443 8999999
Q ss_pred eecc
Q psy7694 174 MPKE 177 (317)
Q Consensus 174 MPKv 177 (317)
|||.
T Consensus 81 lPk~ 84 (84)
T cd06498 81 GPRK 84 (84)
T ss_pred EeCC
Confidence 9984
No 29
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=90.90 E-value=1.2 Score=35.13 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=49.3
Q ss_pred ecc-CCCeEEEEeeccccccccceeecccCcEEEEEEc------------------C-eeeeeecCccccCCCcceeeee
Q psy7694 106 LEN-ERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIK------------------N-KVLQLALDDTVLTDKSYAQRSE 165 (317)
Q Consensus 106 L~E-e~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IK------------------G-KlfQL~LpeEVkpD~S~aqRSq 165 (317)
+.+ +.+.|+|.+++|- ++-.=|+|.+.=+++.|.-+ | =--.+.||+.|.++ +-+-
T Consensus 5 i~e~~~~~~~v~~~lPG-~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~----~A~~ 79 (90)
T cd06470 5 IEKTGENNYRITLAVAG-FSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK----GAEL 79 (90)
T ss_pred eEEcCCCeEEEEEECCC-CCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC----eeEE
Confidence 444 3489999999996 58888999998887666632 1 12357899988765 4468
Q ss_pred ccceEEEEeec
Q psy7694 166 ATRHLVVTMPK 176 (317)
Q Consensus 166 TTGhLvItMPK 176 (317)
.-|-|.|+||+
T Consensus 80 ~~GvL~I~l~~ 90 (90)
T cd06470 80 ENGLLTIDLER 90 (90)
T ss_pred eCCEEEEEEEC
Confidence 88999999985
No 30
>PRK10743 heat shock protein IbpA; Provisional
Probab=90.86 E-value=0.97 Score=39.06 Aligned_cols=70 Identities=14% Similarity=0.272 Sum_probs=52.7
Q ss_pred eeecc-CCCeEEEEeeccccccccceeecccCcEEEEEEcCe----------------ee--eeecCccccCCCcceeee
Q psy7694 104 FRLEN-ERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNK----------------VL--QLALDDTVLTDKSYAQRS 164 (317)
Q Consensus 104 F~L~E-e~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGK----------------lf--QL~LpeEVkpD~S~aqRS 164 (317)
+.+.+ +++.|++.+++|-+ +-.=|+|.|+-+++.|.-+.+ -| .+.||+.|.+|+ =+
T Consensus 37 ~di~ee~~~~~~v~aelPGv-~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~----A~ 111 (137)
T PRK10743 37 YNVELVDENHYRIAIAVAGF-AESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG----AN 111 (137)
T ss_pred EEEEEcCCCEEEEEEECCCC-CHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc----CE
Confidence 55653 57899999999976 567799999988655443211 12 588999999983 56
Q ss_pred eccceEEEEeeccC
Q psy7694 165 EATRHLVVTMPKES 178 (317)
Q Consensus 165 qTTGhLvItMPKv~ 178 (317)
---|-|.|+|||+.
T Consensus 112 ~~dGVL~I~lPK~~ 125 (137)
T PRK10743 112 LVNGLLYIDLERVI 125 (137)
T ss_pred EeCCEEEEEEeCCC
Confidence 77899999999974
No 31
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=90.68 E-value=0.98 Score=43.61 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=63.8
Q ss_pred CCCcceeeccCCCeEEEEeeccccccccceeecccCcEEEEEEc---Ceeeee--ecCccccCCCcceeeeeccceEEEE
Q psy7694 99 QANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIK---NKVLQL--ALDDTVLTDKSYAQRSEATRHLVVT 173 (317)
Q Consensus 99 EgK~~F~L~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IK---GKlfQL--~LpeEVkpD~S~aqRSqTTGhLvIt 173 (317)
.+++.|-+....+++++.|.+- -++-.-+.|+..++-|+|.|. |+.+++ .|-.+|.|+.|+.+-..+ .+.|+
T Consensus 154 ~~~~r~dWyQs~~~V~i~i~~k-~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~--Kiei~ 230 (356)
T PLN03088 154 KPKYRHEFYQKPEEVVVTVFAK-GVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLST--KIEIR 230 (356)
T ss_pred CCccccceeecCCEEEEEEEec-CCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEecc--eEEEE
Confidence 4566777777888999988775 567888999999999999884 555555 688999999999888655 99999
Q ss_pred eeccCcc
Q psy7694 174 MPKESGR 180 (317)
Q Consensus 174 MPKv~~~ 180 (317)
|.|..+.
T Consensus 231 l~K~~~~ 237 (356)
T PLN03088 231 LAKAEPI 237 (356)
T ss_pred EecCCCC
Confidence 9998753
No 32
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=88.07 E-value=1.7 Score=37.98 Aligned_cols=70 Identities=11% Similarity=0.267 Sum_probs=51.5
Q ss_pred eeecc-CCCeEEEEeeccccccccceeecccCcEEEEEEcCe----------------ee--eeecCccccCCCcceeee
Q psy7694 104 FRLEN-ERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNK----------------VL--QLALDDTVLTDKSYAQRS 164 (317)
Q Consensus 104 F~L~E-e~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGK----------------lf--QL~LpeEVkpD~S~aqRS 164 (317)
..+-+ +++.|++.+++|-+ +=.=|+|+|+-+++.|.-+.+ -| .+.||+.|.++ +=+
T Consensus 35 vdI~e~~~~~y~v~adlPGv-~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~----~A~ 109 (142)
T PRK11597 35 YNIEKSDDNHYRITLALAGF-RQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS----GAT 109 (142)
T ss_pred EEEEEcCCCEEEEEEEeCCC-CHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC----cCE
Confidence 34444 45789999999987 566789999888865554421 13 36799999887 245
Q ss_pred eccceEEEEeeccC
Q psy7694 165 EATRHLVVTMPKES 178 (317)
Q Consensus 165 qTTGhLvItMPKv~ 178 (317)
---|-|.|++||..
T Consensus 110 ~~nGVL~I~lPK~~ 123 (142)
T PRK11597 110 FVNGLLHIDLIRNE 123 (142)
T ss_pred EcCCEEEEEEeccC
Confidence 67899999999974
No 33
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=87.39 E-value=3.5 Score=34.16 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=52.1
Q ss_pred CCeEEEEeeccccccccceeecccCcEEEEEEcC---e--eeeeecCccccCCCcceeeeeccceEEEEeeccCcc
Q psy7694 110 RDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKN---K--VLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESGR 180 (317)
Q Consensus 110 ~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKG---K--lfQL~LpeEVkpD~S~aqRSqTTGhLvItMPKv~~~ 180 (317)
.+.+.|+|.++- ..=+.|+++++++.+..+| + -|.|.|=.+|.|+.|+..- +.-++.|++.|..+.
T Consensus 10 ~~~V~ltI~v~d---~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v--~~r~ve~~L~K~~~~ 80 (106)
T cd00237 10 RDYVFIEFCVED---SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKR--TDRSILCCLRKGKEG 80 (106)
T ss_pred CCEEEEEEEeCC---CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEe--CCceEEEEEEeCCCC
Confidence 468999999985 6778899999999888754 3 4568999999999998874 445577888887643
No 34
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=83.25 E-value=4.3 Score=32.09 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=46.6
Q ss_pred ccCCCeEEEEeeccccccccceeecccCcEEEEEEcCee-----------e--eeecCccccCCCcceeeeec-cceEEE
Q psy7694 107 ENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKV-----------L--QLALDDTVLTDKSYAQRSEA-TRHLVV 172 (317)
Q Consensus 107 ~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGKl-----------f--QL~LpeEVkpD~S~aqRSqT-TGhLvI 172 (317)
.|+++.|.+.+.+|-|- -.=|+|+|..+.+.|.-+.+. | ++.||+.|.+|+.+| +-. -|.|.|
T Consensus 6 ~e~~~~~~v~~dlPG~~-~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A--~~~~dGvL~I 82 (86)
T cd06475 6 RQTADRWKVSLDVNHFA-PEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTS--SLSPDGILTV 82 (86)
T ss_pred EEcCCeEEEEEECCCCC-HHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEE--EECCCCeEEE
Confidence 34678999999999875 467899999885444433211 2 467788777766554 444 799999
Q ss_pred Eee
Q psy7694 173 TMP 175 (317)
Q Consensus 173 tMP 175 (317)
+||
T Consensus 83 ~lP 85 (86)
T cd06475 83 EAP 85 (86)
T ss_pred Eec
Confidence 998
No 35
>KOG0531|consensus
Probab=81.52 E-value=0.13 Score=49.81 Aligned_cols=140 Identities=16% Similarity=0.064 Sum_probs=104.3
Q ss_pred hhHHHhhccCCCChhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCccccc-CCCcccccCCCcceeeccCCCeEEEEee
Q psy7694 40 DIDTINQSTTDNSPESRIYMSRLNQAIHEKQNGGGEKQNGDQDGGRKFFKQ-DGRPLNMNQANIDFRLENERDRYVLTVH 118 (317)
Q Consensus 40 e~~~FW~~k~~hTPEsR~em~re~eeqrk~~e~k~~~~~~~~K~~~~Lf~~-dGr~ln~NEgK~~F~L~Ee~~~ivLdl~ 118 (317)
....||+-+..+.+..|+.-.+.++......+-... ..+........... ++...+.....+++........+.+...
T Consensus 250 ~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (414)
T KOG0531|consen 250 GLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLN-DNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSLDLRTK 328 (414)
T ss_pred cccccccccccchhhccccccccccccchHHHhccC-cchhcchhhhhccccccccccccccccccCcccccccccHHHH
Confidence 355688889999999998777766554444333211 11111111122222 5556666666666666666677788889
Q ss_pred ccccccccceeecccCcEEEEEEcCeeeeeecCccccCCCcceeeeeccceEEEEeeccCcc
Q psy7694 119 VYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESGR 180 (317)
Q Consensus 119 VyKyLDTSLIDVDVQPtYVRV~IKGKlfQL~LpeEVkpD~S~aqRSqTTGhLvItMPKv~~~ 180 (317)
++..+.++++.+|.+..+.++..+.+.+++.....+.+|.+.+.+++..++..+.++.....
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (414)
T KOG0531|consen 329 VRLTLLTSLVQIDPKLIKAAAELKESPILSALAAASLGDSSTARRSRLSSRIAVLTPSVSVL 390 (414)
T ss_pred HHHhccchhhhhhhhhcchHHhhhccCCchhhccccccccccccccchhhhhhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999876644
No 36
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=72.14 E-value=14 Score=29.47 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=47.1
Q ss_pred CCCeEEEEeeccccccccceeecccCcEEEEEEcC--------e---e--eeeecCccccCCCcceeeeeccceEEEEee
Q psy7694 109 ERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKN--------K---V--LQLALDDTVLTDKSYAQRSEATRHLVVTMP 175 (317)
Q Consensus 109 e~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKG--------K---l--fQL~LpeEVkpD~S~aqRSqTTGhLvItMP 175 (317)
+.+.|++.+.+|-|- =-=|+|+|.-+++.|.-+- . - -++.||..|.+++.+|.=+ -.|.|.|+-|
T Consensus 5 ~~~~~~v~~dlpG~~-~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~-~dGvL~I~~~ 82 (83)
T cd06477 5 GKPMFQILLDVVQFR-PEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLC-HDGILVVETK 82 (83)
T ss_pred CCceEEEEEEcCCCC-HHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEc-CCCEEEEEec
Confidence 567999999999875 4567888888877665541 1 1 1467899998888887643 5788888754
No 37
>KOG2265|consensus
Probab=65.17 E-value=9.1 Score=35.40 Aligned_cols=58 Identities=16% Similarity=0.254 Sum_probs=48.9
Q ss_pred ceeeccCCCeEEEEeeccccc-cccceeecccCcEEEEEEcCe--eeeeecCccccCCCcc
Q psy7694 103 DFRLENERDRYVLTVHVYRYL-DTSLLDVDVQPNYVRVTIKNK--VLQLALDDTVLTDKSY 160 (317)
Q Consensus 103 ~F~L~Ee~~~ivLdl~VyKyL-DTSLIDVDVQPtYVRV~IKGK--lfQL~LpeEVkpD~S~ 160 (317)
.|.++.+=..+.+.|.||..- ...-|.|.+|-..|+|-+||. ++-=.|..+|++|+|.
T Consensus 20 ~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG~L~~~vk~des~ 80 (179)
T KOG2265|consen 20 KYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDGELSHSVKVDEST 80 (179)
T ss_pred ceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceecCccccccccccce
Confidence 356666556788888898887 888999999999999999998 5666789999999986
No 38
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=62.82 E-value=15 Score=29.64 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=27.8
Q ss_pred CCCeEEEEeeccccccccceeecccCcEEEEEEc
Q psy7694 109 ERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIK 142 (317)
Q Consensus 109 e~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IK 142 (317)
+++.|++.+.+|-| +-.=|+|.|.-+++.|.-+
T Consensus 6 ~~~~~~v~adlPG~-~kedI~V~v~~~~L~I~ge 38 (87)
T cd06482 6 DSSNVLASVDVCGF-EPDQVKVKVKDGKVQVSAE 38 (87)
T ss_pred cCCEEEEEEECCCC-CHHHeEEEEECCEEEEEEE
Confidence 56789999999966 7888999999999766665
No 39
>KOG0710|consensus
Probab=55.80 E-value=24 Score=32.02 Aligned_cols=80 Identities=20% Similarity=0.217 Sum_probs=58.5
Q ss_pred ccCCCcceeeccCCCeEEEEeeccccccccceeecccCcEEEEEEcCe------------------------eeeeecCc
Q psy7694 97 MNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNK------------------------VLQLALDD 152 (317)
Q Consensus 97 ~NEgK~~F~L~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGK------------------------lfQL~Lpe 152 (317)
.++...++...+.++.+++.+.+|-.= +--|.|+|++.-|+ +|.|+ .-.+.||+
T Consensus 80 ~~~~~~~~~v~e~~~~~~~~~~~Pgl~-ke~iKv~~~~~~~l-~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPe 157 (196)
T KOG0710|consen 80 KSEARVPWDVKESPDAHEFKVDLPGLK-KEDIKVEVEDEKVL-TISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPE 157 (196)
T ss_pred cccccCCcccccCCCceEEEeeCCCCC-chhceEEeccCcEE-EEecccccccccccCCccceeehhcccceEeeecCCc
Confidence 444444555566788999999999876 99999999999632 23332 23577888
Q ss_pred cccCCCcceeeeeccceEEEEeeccCcc
Q psy7694 153 TVLTDKSYAQRSEATRHLVVTMPKESGR 180 (317)
Q Consensus 153 EVkpD~S~aqRSqTTGhLvItMPKv~~~ 180 (317)
.|..|.-+| .-.-|-|.|++||+.+.
T Consensus 158 nv~~d~ikA--~~~nGVL~VvvpK~~~~ 183 (196)
T KOG0710|consen 158 NVDVDEIKA--EMENGVLTVVVPKLEPL 183 (196)
T ss_pred cccHHHHHH--HhhCCeEEEEEeccccc
Confidence 885555444 55789999999999975
No 40
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=49.58 E-value=8.5 Score=24.82 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=11.8
Q ss_pred CCcccccCCCcccc
Q psy7694 84 GRKFFKQDGRPLNM 97 (317)
Q Consensus 84 ~~~Lf~~dGr~ln~ 97 (317)
....|.++||++|+
T Consensus 4 ~~t~FSp~Grl~QV 17 (23)
T PF10584_consen 4 SITTFSPDGRLFQV 17 (23)
T ss_dssp STTSBBTTSSBHHH
T ss_pred CceeECCCCeEEee
Confidence 45689999999986
No 41
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=44.31 E-value=7.2 Score=25.90 Aligned_cols=12 Identities=58% Similarity=0.969 Sum_probs=8.6
Q ss_pred CCChhhHHHHHHhh
Q psy7694 238 ELPALELNSWIKQL 251 (317)
Q Consensus 238 ~lP~l~~~~~~~~~ 251 (317)
-||.|| ||||+-
T Consensus 12 ~LP~lI--SWIK~k 23 (26)
T PF01372_consen 12 GLPTLI--SWIKNK 23 (26)
T ss_dssp HHHHHH--HHHHHH
T ss_pred cChHHH--HHHHHH
Confidence 367766 899974
No 42
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=38.23 E-value=1.1e+02 Score=24.97 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=41.1
Q ss_pred CCCeEEEEeeccccccccceeecccCcEEEEEEcCe-------------eeeeecCccccCCCcceeeeec-cceEEEEe
Q psy7694 109 ERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNK-------------VLQLALDDTVLTDKSYAQRSEA-TRHLVVTM 174 (317)
Q Consensus 109 e~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGK-------------lfQL~LpeEVkpD~S~aqRSqT-TGhLvItM 174 (317)
+.+.|.+.|+|.-|. -.=|+|.|.-+++.|.-|-+ --.+.||+.|.++..+ -+-+ -|.|.|+.
T Consensus 13 ~~~~f~v~ldv~gF~-pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~--s~l~~dGvL~Iea 89 (91)
T cd06480 13 SSEPWKVCVNVHSFK-PEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVF--ASLSPEGLLIIEA 89 (91)
T ss_pred CCCcEEEEEEeCCCC-HHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEE--EEeCCCCeEEEEc
Confidence 345677777776665 45677777777655544311 1235688888776554 3444 79999998
Q ss_pred e
Q psy7694 175 P 175 (317)
Q Consensus 175 P 175 (317)
|
T Consensus 90 P 90 (91)
T cd06480 90 P 90 (91)
T ss_pred C
Confidence 8
No 43
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=30.55 E-value=42 Score=27.47 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=18.2
Q ss_pred eEEEEeeccccccccceeecccCcEEEEEE
Q psy7694 112 RYVLTVHVYRYLDTSLLDVDVQPNYVRVTI 141 (317)
Q Consensus 112 ~ivLdl~VyKyLDTSLIDVDVQPtYVRV~I 141 (317)
.++|.+.|| .+.|||.|+|+=-.|.+
T Consensus 75 ~~vL~i~~p----~~~vDVNvhP~K~eV~f 100 (119)
T PF01119_consen 75 IFVLFIEIP----PSEVDVNVHPAKREVRF 100 (119)
T ss_dssp EEEEEEE-S----GGGEEETSSTTTT-EEE
T ss_pred eEEEEEEcc----hHHccccccccceEEEe
Confidence 577777765 88999999998444443
No 44
>KOG3247|consensus
Probab=26.40 E-value=38 Score=35.35 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=63.7
Q ss_pred ceeeccCCCeEEEEeeccccccccceeecccCcEEEEEEcCeeeeeecCccccCCCccee-eeeccceEEEEeeccCccc
Q psy7694 103 DFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSYAQ-RSEATRHLVVTMPKESGRA 181 (317)
Q Consensus 103 ~F~L~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKGKlfQL~LpeEVkpD~S~aq-RSqTTGhLvItMPKv~~~~ 181 (317)
.|.+..+.+.+.|+|..| |-..|=+++|.+-+-+...+---.+||++|..|.-|....- =---.|...|+.||..+.+
T Consensus 5 ~f~itqdee~~~L~I~~p-~~~a~~le~~a~~nm~~f~~~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK~~K~~~~e 83 (466)
T KOG3247|consen 5 QFAITQDEEFCTLIIPRP-LNQASKLEIDAAANMASFSAGPYFLRLAGPGMVEDDARPNASYDAKDGYAHVKVPKFHPGE 83 (466)
T ss_pred eeeeeecCceEEEEeecc-ccchhccchhhHhhhhhhccchhHHhhcCcchhhhhccccCccccccceeEEeecCCCccc
Confidence 377777788999999999 88999999999998888888888899999999987765522 1222399999999988773
No 45
>PF09814 HECT_2: HECT-like Ubiquitin-conjugating enzyme (E2)-binding; InterPro: IPR019193 This entry consists of E3 ubiquitin-protein ligases which accept ubiquitin from specific E2 ubiquitin-conjugating enzymes, and transfer it to substrates, generally promoting their degradation by the proteasome [].
Probab=23.66 E-value=3e+02 Score=26.25 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=44.3
Q ss_pred eEEEEeecccccccc-ceeecccCcEEEEEEc-CeeeeeecCccccCCCcceeeeec-cceEEEEeeccC
Q psy7694 112 RYVLTVHVYRYLDTS-LLDVDVQPNYVRVTIK-NKVLQLALDDTVLTDKSYAQRSEA-TRHLVVTMPKES 178 (317)
Q Consensus 112 ~ivLdl~VyKyLDTS-LIDVDVQPtYVRV~IK-GKlfQL~LpeEVkpD~S~aqRSqT-TGhLvItMPKv~ 178 (317)
++.+-|..++-.+.+ .+.+.....-|+|..+ |-...|.||.+|..+.++..--+. .|+|...|+-..
T Consensus 8 ~~~v~v~~~~~~~~~~~~~l~~s~~~i~i~~~~~~~~~i~LP~~v~~~~~~~~~~~~~~~~~~~rl~~~~ 77 (354)
T PF09814_consen 8 SISVFVSLPSEVNSSTRTSLSPSGLSITISEKSGESESIKLPAEVSLDSSTLSILQISSNELSFRLQLDE 77 (354)
T ss_pred eEEEEEECCCccCcccceeecCCCCeEEEecCCceEEEEeCcCeEeeccccceeecccCceEEEEEEecC
Confidence 455555555554333 2356666666777777 779999999999999886665554 346666665544
No 46
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=21.58 E-value=42 Score=28.14 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=16.6
Q ss_pred cccccceeecccCcEEEEEEc
Q psy7694 122 YLDTSLLDVDVQPNYVRVTIK 142 (317)
Q Consensus 122 yLDTSLIDVDVQPtYVRV~IK 142 (317)
.||.+.|||.|+|+=-.|...
T Consensus 89 ~i~p~~vDVNVHP~K~eV~f~ 109 (127)
T cd03483 89 EIPPENVDVNVHPTKREVHFL 109 (127)
T ss_pred EeChHHeeeccCCCccEEEec
Confidence 467899999999986666554
No 47
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=20.73 E-value=1.5e+02 Score=24.86 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=20.8
Q ss_pred cceeecc-CCCeEEEEeecccccccc
Q psy7694 102 IDFRLEN-ERDRYVLTVHVYRYLDTS 126 (317)
Q Consensus 102 ~~F~L~E-e~~~ivLdl~VyKyLDTS 126 (317)
-.|.|.+ .++.|+|+|..+.|.=-.
T Consensus 30 G~F~f~~Vp~GsY~L~V~s~~~~F~~ 55 (123)
T PF09430_consen 30 GSFVFHNVPPGSYLLEVHSPDYVFPP 55 (123)
T ss_pred CEEEeCCCCCceEEEEEECCCccccC
Confidence 3699999 789999999999987443
Done!