RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7694
(317 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 2e-06
Identities = 32/181 (17%), Positives = 66/181 (36%), Gaps = 36/181 (19%)
Query: 101 NIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQ--PNYVRVTIKNKVLQLALDDTVLTDK 158
++DF + +Y + V+ D + + D + + + + + + D ++ K
Sbjct: 6 HMDFETGEHQYQYKDILSVF--EDAFVDNFDCKDVQDMPKSILSKEEI-----DHIIMSK 58
Query: 159 SYAQRSEATRHLVVTMPKESGRAVLGQNETVKKTSPKKDTPNQK------SNPDQPPVSN 212
T L T+ + Q E V+K + N K + P
Sbjct: 59 D---AVSGTLRLFWTLLSK-------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 213 QREYLEIGKSIHYENMDFSQIYANSELPALELNSWIKQLDWLTSWARPSGNYLALVFLVG 272
R Y+E ++ +N F++ + P L+L + +L RP+ N V + G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-------RPAKN----VLIDG 157
Query: 273 L 273
+
Sbjct: 158 V 158
Score = 45.2 bits (106), Expect = 2e-05
Identities = 52/323 (16%), Positives = 90/323 (27%), Gaps = 102/323 (31%)
Query: 24 QRIQNAHLLSRPITQQDIDTINQSTTDNSPESRIYMSR------LNQAIHEKQNGGGEKQ 77
I+ +T+ I+ ++ DN ++ +SR L QA+ E +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 78 NG---------------DQDGGRKF--------FKQDGRP---LNMNQ------------ 99
+G K K P L M Q
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 100 -----ANIDFRLEN--ERDRYVLTVHVYRYLDTSLLDVD-VQ-PNYVRV-TIKNKVLQLA 149
+NI R+ + R +L Y LL + VQ + K+L
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYE---NCLLVLLNVQNAKAWNAFNLSCKIL--- 269
Query: 150 LDDTVLT-DKSYAQRSEATRHLVVTMPKESGRAVLGQNETV----KKTS-PKKDTPNQ-- 201
+ T K A +++ + L +E K +D P +
Sbjct: 270 ----LTTRFKQVTDFLSAATTTHISL--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 202 KSNPDQPPVSNQREYLE---IGKSIHYENMDFSQIYANSELPALE--LNSWIKQLDWLTS 256
+NP I +SI + + + + L + S + L+
Sbjct: 324 TTNP-----------RRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLE---- 367
Query: 257 WARPS---GNYLAL-VFLVGLHI 275
P+ + L VF HI
Sbjct: 368 ---PAEYRKMFDRLSVFPPSAHI 387
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 54/321 (16%), Positives = 101/321 (31%), Gaps = 87/321 (27%)
Query: 27 QNAHLLSRPITQQDIDTINQS-----------TTDNSPESRIYMSRLNQAIHEKQNGGGE 75
+ H L+ + Q++ T+ ++ P + S L +A+
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV--------- 149
Query: 76 KQNGDQDGGRKFFKQDGRPLNMNQANIDFRLENE-RDRYVLTVHVYRYLDTSLLDVDVQP 134
+G + G Q N D E E RD Y Y L L+ +
Sbjct: 150 -----GEGNAQLVAIFG-----GQGNTDDYFE-ELRDLY----QTYHVLVGDLIKFSAET 194
Query: 135 --NYVRVTIK-NKVLQLALD-DTVLTDKSYAQRSEATRHLVVTMPKESGRAVLGQNETVK 190
+R T+ KV L+ L + S + + ++ P G L
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL-IGVIQLAHYVVTA 253
Query: 191 KTSPKKDTPNQKSNPDQPPVSNQREYLEIGKSIHYENMDFSQIYANSELPALELNSWIKQ 250
K TP R YL+ G + H + + + A + +SW
Sbjct: 254 KLLGF--TP-----------GELRSYLK-GATGHSQGLVTAVAIAET-------DSW--- 289
Query: 251 LDWLTSWARPSGNYLALVFLVGLHINCEEN-PISN----------DHNANSASN--SVQE 297
S+ + ++F +G+ C E P ++ ++N S S+
Sbjct: 290 ----ESFFVSVRKAITVLFFIGVR--CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 298 I---ILGTYIMKSNIYQDENE 315
+ + Y+ K+N + +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGK 364
Score = 33.1 bits (75), Expect = 0.13
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 32/139 (23%)
Query: 166 ATRHLVVTMPKESGRAVL-GQNETVKKTSPKKDTPNQKSNP-DQ--PPVSNQREYLEIGK 221
++LVV+ P +S L G N T++K +Q P + SN+ +L +
Sbjct: 373 GAKNLVVSGPPQS----LYGLNLTLRKAKAPSGL-DQSRIPFSERKLKFSNR--FLPVAS 425
Query: 222 SIHYENMDFSQIYANSELPALELNSWIKQLDWLTSWARPSGNYLAL-VFLVGLHINCEEN 280
H S + PA +L I + D + + + + + V+ +
Sbjct: 426 PFH------SHLLV----PASDL---INK-DLVKNNVSFNAKDIQIPVY----DTFDGSD 467
Query: 281 PISNDHNANSASNSVQEII 299
+ + + V II
Sbjct: 468 L--RVLSGSISERIVDCII 484
Score = 32.3 bits (73), Expect = 0.27
Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 57/175 (32%)
Query: 9 SILFINMGVRLFRAQQRIQNAHLLSRPITQQDIDTINQSTTDNSPESRIYM---SRLNQA 65
++LF +GVR + N L P +D N+ SP M S L Q
Sbjct: 301 TVLFF-IGVR---CYEAYPNTSL--PPSILEDSLENNEGVP--SP-----MLSISNLTQE 347
Query: 66 IHEKQNGGGEKQNGDQDGGRKFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDT 125
+ K N G++ ++ L N V++
Sbjct: 348 QVQDYV---NKTNSHLPAGKQ---------------VEISLVNGAKNLVVSGPP-----Q 384
Query: 126 SLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKS---YAQRSEA--TRHLVVTMP 175
SL +++ +R K K A D+S +++R R L V P
Sbjct: 385 SLYGLNLT---LR---KAK----APSG---LDQSRIPFSERKLKFSNRFLPVASP 426
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.012
Identities = 6/30 (20%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 221 KSIHYENMDFS-QIYANSELPALELNSWIK 249
+++ + + S ++YA+ PAL + + ++
Sbjct: 20 QAL--KKLQASLKLYADDSAPALAIKATME 47
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 30.2 bits (68), Expect = 0.88
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 9/72 (12%)
Query: 152 DTVLTDKSYAQRSEATRHLVVTMP-KESGRAVLGQNETV-----KKTSPKKDTPNQKSNP 205
++ D A+R + + ++ E ++ P D PN P
Sbjct: 362 LALVDDPEVARRLRRIQAEMAQEGGTRRAADLI---EAELPARHERQEPVGDRPNVGDRP 418
Query: 206 DQPPVSNQREYL 217
QR L
Sbjct: 419 AGVRSDRQRSAL 430
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
biotin, glutamate fermentation, lyase; HET: COO; 1.75A
{Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Length = 588
Score = 29.3 bits (66), Expect = 2.0
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 33 SRPITQQDIDTINQSTTDNSPESRIYMSRLNQAIHEKQN---GGGEK 76
S P Q++ TI + + +PE+ + + IHE G
Sbjct: 5 SMPGYFQNMPTIGKELVNPNPENEQEIKAVESDIHESIKKALDAGIT 51
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution,
URIC acid degradation, T hormones, peroxisome, purine
metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A
2h6u_A 2h1x_A
Length = 138
Score = 27.9 bits (62), Expect = 2.2
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 25/106 (23%)
Query: 14 NMGVRLFRAQQRIQNAHLLSRPITQQDIDTINQSTTDNSPESRIYMSRLNQAIHEKQNGG 73
NM + L R ++L+ IT D T + + +Y R
Sbjct: 43 NMTIVLHRLDPVSSAWNILTTGITNDD-GRCPGLITKENFIAGVYKMRFE---------- 91
Query: 74 GEKQNGDQDGGRKFFKQDGRPLNMNQANIDFRLENERDRYVLTVHV 119
K++ G I F + N Y HV
Sbjct: 92 ----------TGKYWDALGETCFYPYVEIVFTITNTSQHY----HV 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.371
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,500,557
Number of extensions: 250015
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 12
Length of query: 317
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 223
Effective length of database: 4,077,219
Effective search space: 909219837
Effective search space used: 909219837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.8 bits)