RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7694
         (317 letters)



>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId:
           1063]}
          Length = 124

 Score = 27.9 bits (61), Expect = 0.87
 Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 10/61 (16%)

Query: 77  QNGDQDGGRKFFKQ----------DGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTS 126
           Q GD + G K F Q           G  +    A     L     R   T   ++     
Sbjct: 1   QEGDPEAGAKAFNQCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEG 60

Query: 127 L 127
           +
Sbjct: 61  M 61


>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH)
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 148

 Score = 27.4 bits (60), Expect = 1.3
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 69 KQNGGGEKQNGDQDGGRKFFKQDGR 93
          +Q+        +  G R F + +G 
Sbjct: 16 RQDIDWITFAQNPSGPRPFVRLEGP 40


>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver
           carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 532

 Score = 28.2 bits (61), Expect = 1.5
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 195 KKDTPNQKSNPDQPPVSNQREYLEIGKSI------HYENMDF-SQIYA 235
           +   PN +  P  P  + +  YL+IG +         + + F + ++A
Sbjct: 484 RNGNPNGEGLPHWPEYNQKEGYLQIGANTQAAQKLKDKEVAFWTNLFA 531


>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR,
           N-terminal domain {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 50

 Score = 24.2 bits (53), Expect = 4.1
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 137 VRVTIK-NKVLQLALDDTVLTDKSYAQRSEATRHLV 171
           +R +I     L    D  +  +  Y  RSEA R L+
Sbjct: 4   IRFSISIPSKLLEKFDQII-EEIGYENRSEAIRDLI 38


>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the
          r1128 polyketide biosynthetic pathway {Streptomyces sp.
          r1128 [TaxId: 140437]}
          Length = 153

 Score = 26.2 bits (57), Expect = 4.1
 Identities = 5/25 (20%), Positives = 9/25 (36%)

Query: 69 KQNGGGEKQNGDQDGGRKFFKQDGR 93
            +   ++   D   GR     DG+
Sbjct: 16 HMSSSWDQYVEDPSVGRPALVMDGK 40


>d1e44b_ b.101.1.1 (B:) Ribonuclease domain of colicin E3
          {Escherichia coli [TaxId: 562]}
          Length = 96

 Score = 25.2 bits (55), Expect = 4.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 69 KQNGGGEKQNGDQDGGRKFFKQDG 92
          KQNGGG+++    D GRK ++ D 
Sbjct: 33 KQNGGGKRKRWTGDKGRKIYEWDS 56


>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
           reticulum-resident ubiquitin-like domain member 1
           protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 93

 Score = 24.8 bits (54), Expect = 5.7
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 98  NQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTD 157
           NQ + D  L  +R     +V   +   + +     +P   R+    K+L    D   L D
Sbjct: 16  NQRHRDLELSGDRG---WSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL---DHQCLRD 69

Query: 158 KSYAQRSEATRHLVVTMPK 176
               Q      HLV  +  
Sbjct: 70  LLPKQEKRHVLHLVCNVKS 88


>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 48

 Score = 23.1 bits (50), Expect = 9.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 152 DTVLTDKSYAQRSEATRHLV 171
           D++   + Y  RSEA R ++
Sbjct: 17  DSLSQRRGYNNRSEAIRDIL 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,087,844
Number of extensions: 47399
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 9
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.3 bits)