RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7699
         (150 letters)



>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family. 
          Length = 510

 Score = 96.6 bits (241), Expect = 3e-24
 Identities = 43/112 (38%), Positives = 51/112 (45%), Gaps = 21/112 (18%)

Query: 34  IVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFS 93
           +V T YG++ GL  T       V  F G+PYA PPVG LRF  P     W+GV  A ++ 
Sbjct: 2   VVETSYGKVRGLRVTVDG--GPVYAFLGIPYAKPPVGELRFKKPQPPEPWTGVLDATKYG 59

Query: 94  PVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPA 145
           P CPQN      M   N                   T  SEDCLYLN+Y P 
Sbjct: 60  PACPQNNDLGSEMWNKN-------------------TGMSEDCLYLNVYTPK 92


>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
          Length = 491

 Score = 85.2 bits (211), Expect = 3e-20
 Identities = 38/119 (31%), Positives = 49/119 (41%), Gaps = 27/119 (22%)

Query: 31  SSRIVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVAD 90
            + +  T  G++ G+        + V  + G+PYA PPVG LRF  PV    WSGV+ A 
Sbjct: 1   RAPVAETTTGKVEGITV------NGVHSWLGIPYAAPPVGELRFRRPVPPEPWSGVRDAT 54

Query: 91  RFSPVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQGRT 149
           +F P CPQ                                  SEDCLYLNI+AP     
Sbjct: 55  QFGPACPQPFNRMGSGEDF---------------------TGSEDCLYLNIWAPEVPAE 92


>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
           lipases, cholinesterases, etc.)  These enzymes act on
           carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
           involves three residues (catalytic triad): a serine, a
           glutamate or aspartate and a histidine.These catalytic
           residues are responsible for the nucleophilic attack on
           the carbonyl carbon atom of the ester bond. In contrast
           with other alpha/beta hydrolase fold family members,
           p-nitrobenzyl esterase and acetylcholine esterase have a
           Glu instead of Asp at the active site carboxylate.
          Length = 493

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 38/117 (32%), Positives = 45/117 (38%), Gaps = 33/117 (28%)

Query: 34  IVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFS 93
           +V T  G++ G+          V  F G+PYA PPVG LRF  P     WS V  A  + 
Sbjct: 1   LVVTPNGKVRGVDEGG------VYSFLGIPYAEPPVGDLRFKEPQPYEPWSDVLDATSYP 54

Query: 94  PVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTN----QSEDCLYLNIYAPAQ 146
           P C Q                          L   L N     SEDCLYLN+Y P  
Sbjct: 55  PSCMQWDQ-----------------------LGGGLWNAKLPGSEDCLYLNVYTPKN 88


>gnl|CDD|225379 COG2823, OsmY, Predicted periplasmic or secreted lipoprotein
           [General function prediction only].
          Length = 196

 Score = 30.4 bits (69), Expect = 0.25
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 24  LVFASLTSSRI-VRTKYGE--LSGLVSTPSDRLDAVEIFRGVP 63
           L   ++ SS I V T+ GE  LSGLV +  +   A EI   V 
Sbjct: 141 LGDDNVKSSNIKVETENGEVYLSGLVDSQEEAERAEEIASKVS 183


>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
          Length = 434

 Score = 27.9 bits (63), Expect = 2.3
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 48  TPSDRLDAVEIFRGVPYALP--PVGHLRFMPPVSGALWSGVKVAD 90
              D    V I R  PYA P    G+L  +PP    +  G+ +A 
Sbjct: 361 DRDDVRA-VRISR-APYAQPIYEPGYLDKIPPYDTPI-EGLYLAG 402


>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
           acetyltransferase domain [General function prediction
           only].
          Length = 593

 Score = 27.5 bits (61), Expect = 3.2
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 35  VRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPV 78
                 E+ G  STP+ R   VE+ +   Y    + ++R  PP+
Sbjct: 152 SHVHILEIKG--STPASRFLIVELVKREEYEPRILAYVRVDPPI 193


>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
           Members of this protein family are the FliI protein of
           bacterial flagellum systems. This protein acts to drive
           protein export for flagellar biosynthesis. The most
           closely related family is the YscN family of bacterial
           type III secretion systems. This model represents one
           (of three) segment of the FliI family tree. These have
           been modeled separately in order to exclude the type III
           secretion ATPases more effectively.
          Length = 418

 Score = 27.3 bits (61), Expect = 3.7
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 65  ALPPVGHLRFMPPVSGALWSGVKVADRFSPVC 96
           A PP    R    V   L +GV+V D F P+C
Sbjct: 109 ASPPPAMSR--ARVGEPLDTGVRVIDTFLPLC 138


>gnl|CDD|227732 COG5445, COG5445, Predicted secreted protein [Function unknown].
          Length = 268

 Score = 27.2 bits (60), Expect = 4.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 120 EYLHRLIPYLTNQSEDCLYLNIYA 143
           E LHR +PY T   E C+ + ++A
Sbjct: 239 EVLHRALPYPTPLDEGCVEVELFA 262


>gnl|CDD|224682 COG1768, COG1768, Predicted phosphohydrolase [General function
           prediction only].
          Length = 230

 Score = 26.7 bits (59), Expect = 4.7
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 29  LTSSRIVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMP 76
           L   R+ +  YG L G               RG+ Y L    ++ F P
Sbjct: 183 LEEGRVSKCLYGHLHG----VPRPNIGFSNVRGIEYMLVAADYVEFNP 226


>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1).  The
           homeobox gene Prox1 is expressed in a subpopulation of
           endothelial cells that, after budding from veins, gives
           rise to the mammalian lymphatic system. Prox1 has been
           found to be an early specific marker for the developing
           liver and pancreas in the mammalian foregut endoderm.
           This family contains an atypical homeobox domain.
          Length = 908

 Score = 26.6 bits (58), Expect = 6.6
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 11/84 (13%)

Query: 40  GELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFSPVCPQN 99
             L   V+ P+  L   E+F G P+            P  GA        DR SP  P+ 
Sbjct: 639 FPLPLTVAIPNPSLHQSEVFMGYPFQ----------SPHLGAPSGSPPGKDRDSPDLPRP 688

Query: 100 LPSPVRMRANNTNAHPRGRLEYLH 123
             + +  +  + + HP    + L 
Sbjct: 689 -TTSLHPKLLSAHHHPGSSPDGLS 711


>gnl|CDD|183240 PRK11624, cdsA, CDP-diglyceride synthase; Provisional.
          Length = 285

 Score = 26.1 bits (58), Expect = 7.6
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 16/90 (17%)

Query: 4  INIIIKHIFLLVIIFNAKSSLVFA--SLTSSRIVRTKYGELSGLVSTPSDRLDAVEIFRG 61
          I ++I  +FLL         + FA  +L    +   ++G+LSG  S  S R+  + +  G
Sbjct: 13 IPVVIAALFLL-------PPVGFAIVTLVVCMLAAWEWGQLSGFASR-SQRV-WLAVLCG 63

Query: 62 V-----PYALPPVGHLRFMPPVSGALWSGV 86
          +      + LP   H    P V  +LW+ +
Sbjct: 64 LLLALMLFLLPEYHHNIHQPLVEISLWASL 93


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0745    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,774,082
Number of extensions: 697050
Number of successful extensions: 518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 22
Length of query: 150
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 62
Effective length of database: 7,034,450
Effective search space: 436135900
Effective search space used: 436135900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.5 bits)