RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7699
(150 letters)
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 128 bits (324), Expect = 7e-36
Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 34 IVRTKYGELSG-LVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRF 92
+V T +G++ G ++ L V F GVPYA PP G RF PP + WS ++ A +F
Sbjct: 12 LVTTNFGKIRGIKKELNNEILGPVIQFLGVPYAAPPTGEHRFQPPEPPSPWSDIRNATQF 71
Query: 93 SPVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQGRT 149
+PVCPQN+ P L + Y+ +QSEDCLYLNIY P +
Sbjct: 72 APVCPQNIIDG----RLPEVMLPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTEDDI 124
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 124 bits (312), Expect = 4e-34
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 30 TSSRIVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVA 89
+S +V T +G++ G + V IF G+P+A PP+G LRF PP WS VK A
Sbjct: 3 SSPPVVDTVHGKVLGKFVSLEGFAQPVAIFLGIPFAKPPLGPLRFTPPQPAEPWSFVKNA 62
Query: 90 DRFSPVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQGRT 149
+ P+C Q+ + + + +R SEDCLYLNIY PA
Sbjct: 63 TSYPPMCTQDPKAGQLLSE-----------LFTNRKENIPLKLSEDCLYLNIYTPADLTK 111
Query: 150 D 150
Sbjct: 112 K 112
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 119 bits (300), Expect = 1e-32
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 31 SSRIVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVAD 90
S +V TK G++ G + F G+P+A PPVG++RF P WSGV A
Sbjct: 4 SELLVNTKSGKVMGTRVPVLSS--HISAFLGIPFAEPPVGNMRFRRPEPKKPWSGVWNAS 61
Query: 91 RFSPVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPA 145
+ C Q + + + +P SEDCLYLNI+ P+
Sbjct: 62 TYPNNCQQYVDEQFPGFSGSEMWNPN-------------REMSEDCLYLNIWVPS 103
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 118 bits (298), Expect = 3e-32
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 34 IVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFS 93
I+ TK G++ G+ T V F G+PYA PP+G LRF P S WS + A +++
Sbjct: 5 IIATKNGKVRGMQLTVFGG--TVTAFLGIPYAQPPLGRLRFKKPQSLTKWSDIWNATKYA 62
Query: 94 PVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPA 145
C QN+ + +P T+ SEDCLYLN++ PA
Sbjct: 63 NSCCQNIDQSFPGFHGSEMWNPN-------------TDLSEDCLYLNVWIPA 101
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 118 bits (298), Expect = 3e-32
Identities = 38/120 (31%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 31 SSRIVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVAD 90
+VR + G+L G+ V F G+P+A PPVG RFMPP WSGV A
Sbjct: 6 PQLLVRVRGGQLRGIRLKAPGG--PVSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLDAT 63
Query: 91 RFSPVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQGRTD 150
F VC Q + + +P SEDCLYLN++ P
Sbjct: 64 TFQNVCYQYVDTLYPGFEGTEMWNPN-------------RELSEDCLYLNVWTPYPRPAS 110
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 114 bits (288), Expect = 6e-31
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 25/117 (21%)
Query: 31 SSRIVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVAD 90
+ +IV T+YG++ G + V ++G+PYA PPVG RF P +W V A
Sbjct: 2 THQIVTTQYGKVKGTTE------NGVHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDAT 55
Query: 91 RFSPVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQG 147
+ P+CPQ QSEDCLY+N++AP
Sbjct: 56 AYGPICPQPSDLLSLSYTEL-------------------PRQSEDCLYVNVFAPDTP 93
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 113 bits (285), Expect = 2e-30
Identities = 40/117 (34%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 34 IVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFS 93
+V+T G + G T R V ++ G+PYA PPV LRF PV W GV A S
Sbjct: 6 VVQTSSGPVRGRSVTVQGR--EVHVYTGIPYAKPPVEDLRFRKPVPAEPWHGVLDATGLS 63
Query: 94 PVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQGRTD 150
C Q + +P TN SEDCLY+N++APA+ R
Sbjct: 64 ATCVQERYEYFPGFSGEEIWNPN-------------TNVSEDCLYINVWAPAKARLR 107
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 111 bits (281), Expect = 6e-30
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 23/112 (20%)
Query: 34 IVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFS 93
+V T+YG L G ++ + V +++G+PYA PVG RF+PP W GV+ A F
Sbjct: 5 VVETRYGRLRGEMN------EGVFVWKGIPYAKAPVGERRFLPPEPPDAWDGVREATSFG 58
Query: 94 PVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPA 145
PV Q L SED LYLNI++PA
Sbjct: 59 PVVMQPSDPIFSG-----------------LLGRMSEAPSEDGLYLNIWSPA 93
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 108 bits (272), Expect = 1e-28
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 34 IVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFS 93
V +SG++ V+ F+G+P+A PP+ LRF P A+ FS
Sbjct: 5 AVLNGNEVISGVLEGK------VDTFKGIPFADPPLNDLRFKHPQPFTGSYQGLKANDFS 58
Query: 94 PVCPQNLPSP----VRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPA 145
P C Q P + P L+ + + +EDCLYLN++ PA
Sbjct: 59 PACMQLDPGNSLTLLDKALGLAKVIPEEFRGPLYDMAKGTVSMNEDCLYLNVFRPA 114
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 107 bits (269), Expect = 2e-28
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 34 IVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFS 93
+ G+ ++ E F G+P+A PPVG+LRF PV + + +
Sbjct: 3 TAKLANGDTITGLNAII-----NEAFLGIPFAEPPVGNLRFKDPVPYSGSLNGQKFTSYG 57
Query: 94 PVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQGRTD 150
P C Q P L ++ + QSEDCL +N+ P +
Sbjct: 58 PSCMQQNPEGT---FEENLGKTALDLVMQSKVFQAVLPQSEDCLTINVVRPPGTKAG 111
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 106 bits (266), Expect = 7e-28
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 29/124 (23%)
Query: 27 ASLTSSRIVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGV 86
AS + ++ Y G+ V+ F G+ YA PP+G LRF P +
Sbjct: 5 ASHNAQPVINLGYARYQGVRLE-----AGVDEFLGMRYASPPIGDLRFRAPQDPPANQTL 59
Query: 87 KVADRFSPVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQ 146
+ A + P+C + SEDCL++N++ P+
Sbjct: 60 QSATEYGPICIGLDEEES------------------------PGDISEDCLFINVFKPST 95
Query: 147 GRTD 150
+
Sbjct: 96 ATSQ 99
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 103 bits (258), Expect = 1e-26
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 23/117 (19%)
Query: 34 IVRTKYGELSGL-VSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRF 92
+VRT+ G + GL ++ + FRGVPYA P+G LRF W A +
Sbjct: 9 VVRTESGWIRGLKRRAEGNK--SYASFRGVPYAKQPLGELRFKELQPLEPWQDELDATQE 66
Query: 93 SPVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQGRT 149
PVC Q + L+ I SE C++ NI+ P
Sbjct: 67 GPVCQQT--------------------DVLYGRIMRPRGMSEACIHANIHVPYYALP 103
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 103 bits (258), Expect = 1e-26
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 27/112 (24%)
Query: 34 IVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFS 93
V T+ G + G+ S D+V+IF+G+P+A P P W G A F
Sbjct: 5 SVYTEGGFVEGVNKKLSLFGDSVDIFKGIPFAAAPKA---LEKPERHPGWQGTLKAKSFK 61
Query: 94 PVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPA 145
C Q L T +EDCLYLNI+ P
Sbjct: 62 KRCLQA------------------------TLTQDSTYGNEDCLYLNIWVPQ 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.007
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 64 YALPPV----GHLRFMPPVSGALWSGVKV-ADRFSPVCPQNLPSPVRMRANNTNAHPRGR 118
Y+ P+ G L + V A + ++F+ + LP P A + P
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFN----KILPEPTEGFAAD--DEPTTP 57
Query: 119 LEYLHRLIPYLTNQSED 135
E + + + Y+++ E
Sbjct: 58 AELVGKFLGYVSSLVEP 74
Score = 34.3 bits (78), Expect = 0.010
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 28/74 (37%)
Query: 11 IFLL-VIIFNA-------KSSLVFA--SLTSSRIVRTKYGELSGLVSTPSDRL---DAVE 57
+ L+ F + FA SL GE + L S +D + VE
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSL----------GEYAALASL-ADVMSIESLVE 1784
Query: 58 I--FRG--VPYALP 67
+ +RG + A+P
Sbjct: 1785 VVFYRGMTMQVAVP 1798
Score = 31.9 bits (72), Expect = 0.062
Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 42/150 (28%)
Query: 19 NAKSSLVFASLTSSRIVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPV 78
+ + ++ R Y S PS D++E GVP M +
Sbjct: 295 SVRKAITVLFFIGVRCYEA-YPNTS---LPPSILEDSLENNEGVP---------SPMLSI 341
Query: 79 SGALWSGV-KVADRFSPVCPQNLPSPVRMRANNTNAHPR-----GRLEYLHRLIPYL--- 129
S V ++ + +LP+ ++ + N + G + L+ L L
Sbjct: 342 SNLTQEQVQDYVNKTN----SHLPAGKQVEISLVNG-AKNLVVSGPPQSLYGLNLTLRKA 396
Query: 130 -----TNQSE----------DCLYLNIYAP 144
+QS +L + +P
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Score = 30.0 bits (67), Expect = 0.32
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 26/79 (32%)
Query: 9 KHIFL-LVIIFNAKSSLVFASLTSSRIVRTKYGELSGLVST------PSDRLDAVEIFRG 61
K + + LV N +LV + S L GL T PS LD I
Sbjct: 364 KQVEISLV---NGAKNLVVSGPPQS---------LYGLNLTLRKAKAPSG-LDQSRI--- 407
Query: 62 VPYAL-PPVGHLRFMPPVS 79
P++ RF+ PV+
Sbjct: 408 -PFSERKLKFSNRFL-PVA 424
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 29.1 bits (66), Expect = 0.58
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 15/104 (14%)
Query: 51 DRLDAVEIFRGVPYALPPVGHLRFM---PPVSGALWSGVKVADRF--SPVCPQNLPSPVR 105
+++ PYA P R GV + + + R
Sbjct: 242 SVMNSFGSVSTNPYATGP---ARLEIGVHQFGLLA--GVVASIEYLAALDESARGSRRER 296
Query: 106 MRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQGRT 149
+ + +A YL+R+ YL + + + +
Sbjct: 297 LAVSMQSAD-----AYLNRVFDYLMVSLRSLPLVMLIGRPEAQI 335
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 3.2
Identities = 20/156 (12%), Positives = 48/156 (30%), Gaps = 40/156 (25%)
Query: 21 KSSLVFASLTSSRIVRTKYGE---LS-GLVSTPSDRLDAVE--IFRGVPYALPPVGHL-- 72
K+ + S ++ + L+ ++P L+ ++ +++ P H
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 73 -------------RFM--PPVSGAL------WSGVKVADRFSPVCPQNLPSPVRMR---- 107
R + P L + K + F+ C + L + R
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSC-KIL---LTTRFKQV 277
Query: 108 ANNTNAHPRGRLEYLHRLIPYLTNQSEDCL--YLNI 141
+ +A + H + ++ + L YL+
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A
{Bacillus subtilis} SCOP: a.186.1.2
Length = 84
Score = 24.9 bits (54), Expect = 6.6
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 120 EYLHRLIPYLTNQSEDCLY 138
Y L Y+ +E LY
Sbjct: 10 RYHQLLSRYIAELTETSLY 28
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.55A {Burkholderia
xenovorans}
Length = 134
Score = 25.0 bits (54), Expect = 8.2
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 103 PVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQGRT 149
V + A + P G HR + S+D L I +PA T
Sbjct: 84 AVMLEAGGSAFQPPGVR---HREL----RHSDDLEVLEIVSPAGFAT 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.424
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,280,621
Number of extensions: 126424
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 21
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)