RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7699
(150 letters)
>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver
carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
Length = 532
Score = 111 bits (278), Expect = 3e-30
Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 30 TSSRIVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVA 89
+S +V T +G++ G + V IF G+P+A PP+G LRF PP WS VK A
Sbjct: 1 SSPPVVDTVHGKVLGKFVSLEGFAQPVAIFLGIPFAKPPLGPLRFTPPQPAEPWSFVKNA 60
Query: 90 DRFSPVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQGRT 149
+ P+C Q+ + + TN SEDCLYLNIY PA
Sbjct: 61 TSYPPMCTQDPKAGQLLSELFTNRKE-----------NIPLKLSEDCLYLNIYTPADLTK 109
Query: 150 D 150
Sbjct: 110 K 110
>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 571
Score = 109 bits (273), Expect = 2e-29
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 34 IVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFS 93
+V+T G + G T R V ++ G+PYA PPV LRF PV W GV A S
Sbjct: 4 VVQTSSGPVRGRSVTVQGR--EVHVYTGIPYAKPPVEDLRFRKPVPAEPWHGVLDATGLS 61
Query: 94 PVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQGRT 149
C Q + + TN SEDCLY+N++APA+ R
Sbjct: 62 ATCVQERYEYFPGFSGE-------------EIWNPNTNVSEDCLYINVWAPAKARL 104
>d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 526
Score = 107 bits (266), Expect = 2e-28
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 34 IVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFS 93
I+ TK G++ G+ T V F G+PYA PP+G LRF P S WS + A +++
Sbjct: 2 IIATKNGKVRGMQLTVFGG--TVTAFLGIPYAQPPLGRLRFKKPQSLTKWSDIWNATKYA 59
Query: 94 PVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPA 145
C QN+ + +P T+ SEDCLYLN++ PA
Sbjct: 60 NSCCQNIDQSFPGFHGSEMWNPN-------------TDLSEDCLYLNVWIPA 98
>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray
(Torpedo californica) [TaxId: 7787]}
Length = 532
Score = 106 bits (264), Expect = 3e-28
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 31 SSRIVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVAD 90
S +V TK G++ G + F G+P+A PPVG++RF P WSGV A
Sbjct: 1 SELLVNTKSGKVMGTRVPVLS--SHISAFLGIPFAEPPVGNMRFRRPEPKKPWSGVWNAS 58
Query: 91 RFSPVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPA 145
+ C Q + + + +P SEDCLYLNI+ P+
Sbjct: 59 TYPNNCQQYVDEQFPGFSGSEMWNPN-------------REMSEDCLYLNIWVPS 100
>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 542
Score = 105 bits (263), Expect = 5e-28
Identities = 38/112 (33%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 34 IVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFS 93
+VR + G+L G+ V F G+P+A PPVG RFMPP WSGV A F
Sbjct: 9 LVRVRGGQLRGIRLKAPGG--PVSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLDATTFQ 66
Query: 94 PVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPA 145
VC Q + + +P SEDCLYLN++ P
Sbjct: 67 NVCYQYVDTLYPGFEGTEMWNPN-------------RELSEDCLYLNVWTPY 105
>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB
esterase) {Bacillus subtilis [TaxId: 1423]}
Length = 483
Score = 103 bits (257), Expect = 2e-27
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 25/115 (21%)
Query: 31 SSRIVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVAD 90
+ +IV T+YG++ G + V ++G+PYA PPVG RF P +W V A
Sbjct: 1 THQIVTTQYGKVKGTTE------NGVHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDAT 54
Query: 91 RFSPVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPA 145
+ P+CPQ L L QSEDCLY+N++AP
Sbjct: 55 AYGPICPQPSD-------------------LLSLSYTELPRQSEDCLYVNVFAPD 90
>d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus
(Geotrichum candidum), ATCC 34614 [TaxId: 27317]}
Length = 544
Score = 101 bits (251), Expect = 2e-26
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 34 IVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFS 93
V +SG++ V+ F+G+P+A PP+ LRF P A+ FS
Sbjct: 5 AVLNGNEVISGVLEGK------VDTFKGIPFADPPLNDLRFKHPQPFTGSYQGLKANDFS 58
Query: 94 PVCPQNLPSPVRMRANN----TNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQGRT 149
P C Q P + P L+ + + +EDCLYLN++ PA +
Sbjct: 59 PACMQLDPGNSLTLLDKALGLAKVIPEEFRGPLYDMAKGTVSMNEDCLYLNVFRPAGTKP 118
Query: 150 D 150
D
Sbjct: 119 D 119
>d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida
cylindracea, cholesterol esterase [TaxId: 44322]}
Length = 534
Score = 98.7 bits (244), Expect = 2e-25
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 56 VEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFSPVCPQNLPSPVRMRANNTNAHP 115
E F G+P+A PPVG+LRF PV + + + P C Q P
Sbjct: 20 NEAFLGIPFAEPPVGNLRFKDPVPYSGSLNGQKFTSYGPSCMQQNPEGTF---EENLGKT 76
Query: 116 RGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQGRTD 150
L ++ + QSEDCL +N+ P +
Sbjct: 77 ALDLVMQSKVFQAVLPQSEDCLTINVVRPPGTKAG 111
>d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId:
5061]}
Length = 517
Score = 98.3 bits (243), Expect = 2e-25
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 29/123 (23%)
Query: 28 SLTSSRIVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVK 87
S + ++ Y G+ V+ F G+ YA PP+G LRF P ++
Sbjct: 1 SHNAQPVINLGYARYQGVRLE-----AGVDEFLGMRYASPPIGDLRFRAPQDPPANQTLQ 55
Query: 88 VADRFSPVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPAQG 147
A + P+C + SEDCL++N++ P+
Sbjct: 56 SATEYGPICIGLDEEESP------------------------GDISEDCLFINVFKPSTA 91
Query: 148 RTD 150
+
Sbjct: 92 TSQ 94
>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol
esterase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 579
Score = 91.6 bits (226), Expect = 5e-23
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 27/112 (24%)
Query: 34 IVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVGHLRFMPPVSGALWSGVKVADRFS 93
V T+ G + G+ S D+V+IF+G+P+A P P W G A F
Sbjct: 5 SVYTEGGFVEGVNKKLSLFGDSVDIFKGIPFAAAPKA---LEKPERHPGWQGTLKAKSFK 61
Query: 94 PVCPQNLPSPVRMRANNTNAHPRGRLEYLHRLIPYLTNQSEDCLYLNIYAPA 145
C Q L T +EDCLYLNI+ P
Sbjct: 62 KRCLQA------------------------TLTQDSTYGNEDCLYLNIWVPQ 89
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 449
Score = 24.5 bits (51), Expect = 7.9
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 26 FASLTSSRIVRTKYGELSGLVSTPSDRLDAVEIFRGVPYALPPVG---HLRFMPPVSGAL 82
+ ++ Y ++ ++ A + + +A G + V GAL
Sbjct: 378 VQRMVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFA----GEHTIRNYPATVHGAL 433
Query: 83 WSGVKVADR 91
SG++ A R
Sbjct: 434 LSGLREAGR 442
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.424
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 550,795
Number of extensions: 23486
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 11
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)