BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy77
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 16 VIAHYKIPRYVEFVADFPKTVSGKIQK 42
V A YK PR +EFV + PKTV+GKIQ+
Sbjct: 527 VTAPYKYPRKIEFVLNLPKTVTGKIQR 553
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 16 VIAHYKIPRYVEFVADFPKTVSGKIQK 42
V A YK PR +EFV + PKTV+GKIQ+
Sbjct: 527 VTAPYKYPRKIEFVLNLPKTVTGKIQR 553
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 16 VIAHYKIPRYVEFVADFPKTVSGKIQK 42
V A YK PR +EFV + PKT+SGKI++
Sbjct: 544 VTAPYKYPRIIEFVPELPKTISGKIRR 570
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54
+A YKIP VEFV FP+T GK+ K L + + +K++
Sbjct: 497 LAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLL 534
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54
+A YKIP VEFV FP+T GK+ K L + + +K++
Sbjct: 497 LAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLL 534
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
+A +K PR + FV D PKT +GKIQ++ L +Q
Sbjct: 498 LAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
+A +K P+ V FV D P+ GK+QK VL + +D
Sbjct: 466 LAKFKXPKKVIFVDDLPRNTXGKVQKNVLRETYKD 500
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 32.0 bits (71), Expect = 0.084, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
I+ YK R VEFV + P+T SGK+ + +L ++
Sbjct: 508 ISGYKRVREVEFVEELPRTASGKLLRRLLREK 539
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 32.0 bits (71), Expect = 0.086, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
+A YK+P+ V F P+ +GKI K VL +Q
Sbjct: 479 LARYKLPKKVIFAEAIPRNPTGKILKTVLREQ 510
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47
I + P+ + V D PKT SGKI + +L K
Sbjct: 603 IGPFAAPKLIILVDDLPKTRSGKIMRRILRK 633
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
+A YK+P++ E V P T +GK+Q+ L ++
Sbjct: 463 LAKYKVPKHFEKVDTLPYTSTGKLQRNKLYRE 494
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 20 YKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
Y +P+ F+ + P T +GK+ K +L K +D++
Sbjct: 929 YMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQL 962
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 16 VIAHYKIPRYVEFVADFPKTVSGKIQK 42
+IA YK P++V FV PK G I +
Sbjct: 466 LIARYKKPKHVVFVEALPKDAKGAIDR 492
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52
IA +K+P VE V P T GK+ K L + + +
Sbjct: 500 IAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQK 42
IA YK+P ++ + P T GK+ K
Sbjct: 506 IAQYKLPDQIKLIESLPLTAVGKVDK 531
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,947,686
Number of Sequences: 62578
Number of extensions: 57856
Number of successful extensions: 194
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 15
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)