Query psy77
Match_columns 75
No_of_seqs 190 out of 1623
Neff 8.2
Searched_HMMs 46136
Date Sat Aug 17 01:11:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy77.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/77hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1176|consensus 99.0 3.3E-10 7.2E-15 80.4 5.4 48 2-51 485-532 (537)
2 KOG1177|consensus 98.9 1.6E-09 3.5E-14 76.2 5.2 50 2-53 540-589 (596)
3 PRK09188 serine/threonine prot 98.8 1.7E-08 3.7E-13 68.9 5.3 46 2-50 282-327 (365)
4 PRK07445 O-succinylbenzoic aci 98.8 2.3E-08 5E-13 68.9 5.9 50 3-54 401-450 (452)
5 PRK07824 O-succinylbenzoic aci 98.7 3E-08 6.4E-13 65.9 5.2 47 2-50 310-356 (358)
6 COG0318 CaiC Acyl-CoA syntheta 98.7 2.9E-08 6.2E-13 69.8 5.2 47 3-51 481-527 (534)
7 COG1021 EntE Peptide arylation 98.7 3.3E-08 7.2E-13 68.7 5.0 49 2-51 490-538 (542)
8 PRK05677 long-chain-fatty-acid 98.6 6E-08 1.3E-12 67.9 5.3 48 3-52 511-558 (562)
9 TIGR01217 ac_ac_CoA_syn acetoa 98.6 6.4E-08 1.4E-12 69.3 5.5 44 5-50 582-625 (652)
10 PRK12316 peptide synthase; Pro 98.6 3.3E-08 7.2E-13 82.4 4.0 70 3-74 960-1033(5163)
11 PRK08043 bifunctional acyl-[ac 98.6 9.7E-08 2.1E-12 68.9 5.9 49 2-51 665-713 (718)
12 PRK05691 peptide synthase; Val 98.6 2E-08 4.4E-13 82.8 2.4 68 5-74 4184-4256(4334)
13 PRK03584 acetoacetyl-CoA synth 98.6 9.8E-08 2.1E-12 68.1 5.5 45 5-51 581-625 (655)
14 COG0365 Acs Acyl-coenzyme A sy 98.6 9.9E-08 2.1E-12 67.9 5.4 45 4-50 477-521 (528)
15 PRK05620 long-chain-fatty-acid 98.6 9.6E-08 2.1E-12 67.1 5.2 47 3-51 511-557 (576)
16 PRK10252 entF enterobactin syn 98.6 3.2E-08 6.9E-13 74.6 2.9 70 3-74 921-993 (1296)
17 PRK07788 acyl-CoA synthetase; 98.6 6.6E-08 1.4E-12 67.4 4.3 44 2-47 504-547 (549)
18 PRK08279 long-chain-acyl-CoA s 98.6 6.9E-08 1.5E-12 68.1 4.4 48 2-51 517-564 (600)
19 PLN03102 acyl-activating enzym 98.6 2.3E-07 5E-12 65.5 7.0 49 4-54 509-557 (579)
20 PTZ00237 acetyl-CoA synthetase 98.6 8.3E-08 1.8E-12 68.8 4.6 45 5-51 579-623 (647)
21 TIGR02316 propion_prpE propion 98.6 8.1E-08 1.8E-12 68.3 4.5 46 4-51 559-604 (628)
22 PRK12467 peptide synthase; Pro 98.6 3.6E-08 7.8E-13 81.0 2.5 70 3-74 3548-3620(3956)
23 TIGR03443 alpha_am_amid L-amin 98.6 6E-08 1.3E-12 73.9 3.5 68 4-73 783-862 (1389)
24 PRK07470 acyl-CoA synthetase; 98.5 1.9E-07 4E-12 64.7 5.6 48 2-51 471-518 (528)
25 PRK07008 long-chain-fatty-acid 98.5 2E-07 4.4E-12 65.0 5.6 47 3-51 487-533 (539)
26 PLN02654 acetate-CoA ligase 98.5 1.6E-07 3.4E-12 67.6 5.1 45 5-51 596-640 (666)
27 PRK06334 long chain fatty acid 98.5 1.5E-07 3.3E-12 65.9 4.9 48 3-51 488-535 (539)
28 PLN02574 4-coumarate--CoA liga 98.5 2.3E-07 4.9E-12 65.1 5.6 47 3-51 508-554 (560)
29 PLN03051 acyl-activating enzym 98.5 2.3E-07 5E-12 64.3 5.6 49 3-53 441-493 (499)
30 PLN02246 4-coumarate--CoA liga 98.5 2.4E-07 5.1E-12 64.5 5.3 45 3-49 490-534 (537)
31 PRK05852 acyl-CoA synthetase; 98.5 1.9E-07 4.1E-12 64.9 4.6 46 3-50 486-531 (534)
32 PRK07638 acyl-CoA synthetase; 98.5 2.6E-07 5.6E-12 63.4 5.2 47 3-51 435-481 (487)
33 PRK08314 long-chain-fatty-acid 98.5 3.4E-07 7.4E-12 63.5 5.7 46 3-50 496-541 (546)
34 PLN02860 o-succinylbenzoate-Co 98.5 3.8E-07 8.3E-12 64.0 6.0 50 3-54 506-557 (563)
35 PRK10524 prpE propionyl-CoA sy 98.5 2.4E-07 5.2E-12 65.7 5.0 46 4-51 560-605 (629)
36 PRK04319 acetyl-CoA synthetase 98.5 2.7E-07 5.9E-12 64.7 5.2 44 5-50 515-558 (570)
37 TIGR02188 Ac_CoA_lig_AcsA acet 98.5 3.2E-07 7E-12 65.0 5.4 46 5-52 558-603 (625)
38 PRK06060 acyl-CoA synthetase; 98.5 2.2E-07 4.8E-12 66.9 4.5 43 5-49 448-490 (705)
39 PRK06018 putative acyl-CoA syn 98.5 3.7E-07 7.9E-12 63.7 5.5 47 3-51 488-534 (542)
40 PRK03640 O-succinylbenzoic aci 98.5 4.1E-07 8.8E-12 62.1 5.6 47 2-50 435-481 (483)
41 PRK09029 O-succinylbenzoic aci 98.5 2.2E-07 4.8E-12 63.4 4.3 48 3-52 407-454 (458)
42 PRK06839 acyl-CoA synthetase; 98.5 4.2E-07 9.1E-12 62.2 5.7 46 3-50 449-494 (496)
43 PRK12467 peptide synthase; Pro 98.5 1.2E-07 2.5E-12 78.2 3.2 70 3-74 972-1045(3956)
44 PRK12316 peptide synthase; Pro 98.5 9E-08 2E-12 80.0 2.4 69 4-74 3499-3571(5163)
45 PRK07786 long-chain-fatty-acid 98.4 4.6E-07 1E-11 63.2 5.5 54 3-58 478-531 (542)
46 PRK06145 acyl-CoA synthetase; 98.4 3.9E-07 8.4E-12 62.5 5.0 46 3-50 451-496 (497)
47 PRK05605 long-chain-fatty-acid 98.4 5.1E-07 1.1E-11 63.2 5.7 49 3-53 523-571 (573)
48 PRK06155 crotonobetaine/carnit 98.4 4.1E-07 8.8E-12 63.7 5.2 46 3-50 478-523 (542)
49 PRK00174 acetyl-CoA synthetase 98.4 4.4E-07 9.5E-12 64.6 5.4 47 4-52 565-611 (637)
50 PRK07529 AMP-binding domain pr 98.4 6.2E-07 1.3E-11 64.0 6.1 48 2-51 522-570 (632)
51 PRK05691 peptide synthase; Val 98.4 1.8E-07 4E-12 77.4 3.7 70 3-74 1582-1653(4334)
52 PRK12583 acyl-CoA synthetase; 98.4 6.2E-07 1.3E-11 62.3 5.8 48 3-52 506-553 (558)
53 PRK07798 acyl-CoA synthetase; 98.4 3.6E-07 7.9E-12 62.8 4.6 47 2-50 485-531 (533)
54 PRK06710 long-chain-fatty-acid 98.4 5.1E-07 1.1E-11 63.1 5.3 48 2-51 508-555 (563)
55 PRK09088 acyl-CoA synthetase; 98.4 6.7E-07 1.5E-11 61.3 5.7 47 3-51 439-485 (488)
56 PRK08315 AMP-binding domain pr 98.4 7.5E-07 1.6E-11 62.0 5.8 49 3-53 505-553 (559)
57 PF13193 AMP-binding_C: AMP-bi 98.4 1.5E-07 3.2E-12 50.4 1.8 34 4-39 37-73 (73)
58 PRK13390 acyl-CoA synthetase; 98.4 3.9E-07 8.5E-12 62.7 3.7 40 5-46 462-501 (501)
59 PRK07868 acyl-CoA synthetase; 98.4 6.2E-07 1.3E-11 67.3 4.9 46 2-50 912-957 (994)
60 PLN03052 acetate--CoA ligase; 98.4 7.4E-07 1.6E-11 65.0 5.0 49 3-53 671-723 (728)
61 KOG1175|consensus 98.3 6.2E-07 1.4E-11 64.9 4.4 47 4-52 557-603 (626)
62 PRK07514 malonyl-CoA synthase; 98.3 1.2E-06 2.6E-11 60.2 5.6 47 3-51 455-501 (504)
63 PRK08316 acyl-CoA synthetase; 98.3 1.3E-06 2.8E-11 60.1 5.7 48 3-52 473-520 (523)
64 TIGR01734 D-ala-DACP-lig D-ala 98.3 6.7E-07 1.4E-11 61.4 4.3 43 5-49 458-500 (502)
65 PRK06814 acylglycerophosphoeth 98.3 1.3E-06 2.8E-11 65.6 6.1 50 3-53 1085-1134(1140)
66 PRK04813 D-alanine--poly(phosp 98.3 8.5E-07 1.8E-11 60.7 4.7 44 5-50 459-502 (503)
67 PRK06087 short chain acyl-CoA 98.3 2.1E-06 4.5E-11 59.8 6.7 53 3-57 489-542 (547)
68 PLN02330 4-coumarate--CoA liga 98.3 1.3E-06 2.8E-11 61.0 5.6 47 3-51 495-541 (546)
69 PRK08751 putative long-chain f 98.3 7.9E-07 1.7E-11 62.1 4.5 44 3-48 514-557 (560)
70 PRK13382 acyl-CoA synthetase; 98.3 7.1E-07 1.5E-11 62.3 4.2 43 3-47 494-536 (537)
71 PRK07867 acyl-CoA synthetase; 98.3 1.1E-06 2.4E-11 61.4 5.1 50 2-51 458-507 (529)
72 PRK12406 long-chain-fatty-acid 98.3 1.5E-06 3.3E-11 59.9 5.7 48 3-52 457-504 (509)
73 TIGR03098 ligase_PEP_1 acyl-Co 98.3 7.7E-07 1.7E-11 61.2 4.2 43 3-47 472-514 (515)
74 PRK13391 acyl-CoA synthetase; 98.3 1.4E-06 3E-11 60.3 5.1 46 4-51 464-509 (511)
75 PRK06164 acyl-CoA synthetase; 98.3 1.5E-06 3.3E-11 60.3 5.3 49 3-53 483-534 (540)
76 PRK06178 acyl-CoA synthetase; 98.3 1.7E-06 3.6E-11 60.6 5.5 46 3-51 520-565 (567)
77 PRK05857 acyl-CoA synthetase; 98.3 1.2E-06 2.5E-11 61.3 4.6 45 6-52 488-532 (540)
78 PRK07656 long-chain-fatty-acid 98.3 1.1E-06 2.3E-11 60.3 4.3 43 3-47 470-512 (513)
79 PRK07787 acyl-CoA synthetase; 98.3 9.7E-07 2.1E-11 60.5 4.1 43 3-47 427-469 (471)
80 PRK08308 acyl-CoA synthetase; 98.3 1.3E-06 2.8E-11 59.2 4.6 43 2-46 366-408 (414)
81 PRK06188 acyl-CoA synthetase; 98.3 2.2E-06 4.7E-11 59.4 5.8 46 3-50 471-516 (524)
82 PRK08633 2-acyl-glycerophospho 98.3 2.2E-06 4.8E-11 64.0 6.1 47 3-51 1096-1143(1146)
83 PRK06187 long-chain-fatty-acid 98.3 2E-06 4.3E-11 58.9 5.5 47 3-51 473-519 (521)
84 PRK12492 long-chain-fatty-acid 98.3 1.3E-06 2.8E-11 61.3 4.6 44 3-48 518-561 (562)
85 PRK05851 long-chain-fatty-acid 98.3 6.8E-07 1.5E-11 62.2 3.1 47 3-51 472-522 (525)
86 PRK08276 long-chain-fatty-acid 98.3 2.5E-06 5.4E-11 58.7 5.8 46 5-52 452-497 (502)
87 PRK13295 cyclohexanecarboxylat 98.3 2.5E-06 5.5E-11 59.5 5.7 47 3-51 497-544 (547)
88 PRK08974 long-chain-fatty-acid 98.3 2E-06 4.4E-11 60.1 5.2 49 3-53 509-557 (560)
89 PRK10946 entE enterobactin syn 98.3 2.9E-06 6.3E-11 59.2 5.9 48 3-51 485-532 (536)
90 PRK13388 acyl-CoA synthetase; 98.2 2.1E-06 4.6E-11 60.1 5.1 49 2-50 457-505 (540)
91 PRK08008 caiC putative crotono 98.2 1.2E-06 2.6E-11 60.4 3.8 42 3-46 476-517 (517)
92 PRK07059 Long-chain-fatty-acid 98.2 2.4E-06 5.3E-11 59.7 4.8 44 3-48 512-555 (557)
93 TIGR03205 pimA dicarboxylate-- 98.1 2.6E-06 5.6E-11 59.4 3.8 42 3-46 500-541 (541)
94 PRK07769 long-chain-fatty-acid 98.1 2.2E-06 4.7E-11 61.0 3.4 46 3-50 564-613 (631)
95 TIGR01923 menE O-succinylbenzo 98.1 2.2E-06 4.8E-11 57.8 3.3 41 3-45 396-436 (436)
96 TIGR02275 DHB_AMP_lig 2,3-dihy 98.1 3.4E-06 7.4E-11 58.6 4.2 42 3-46 485-527 (527)
97 TIGR03208 cyc_hxne_CoA_lg cycl 98.1 3.1E-06 6.7E-11 58.9 3.9 42 3-46 495-537 (538)
98 PRK08162 acyl-CoA synthetase; 98.1 1E-05 2.2E-10 56.3 5.7 48 3-53 494-541 (545)
99 PRK12476 putative fatty-acid-- 98.0 4.8E-06 1E-10 59.1 3.5 46 3-50 556-605 (612)
100 PRK13383 acyl-CoA synthetase; 98.0 8.7E-06 1.9E-10 56.4 4.6 42 3-46 474-515 (516)
101 PLN02479 acetate-CoA ligase 98.0 1.6E-05 3.5E-10 55.9 5.1 44 4-50 514-557 (567)
102 TIGR02262 benz_CoA_lig benzoat 98.0 7.5E-06 1.6E-10 56.5 3.2 42 4-47 466-507 (508)
103 TIGR02372 4_coum_CoA_lig 4-cou 97.9 1.7E-05 3.6E-10 54.4 4.2 36 4-41 351-386 (386)
104 PRK09274 peptide synthase; Pro 97.9 2E-05 4.3E-10 55.0 3.9 46 4-51 498-548 (552)
105 KOG1178|consensus 97.6 4.8E-05 1E-09 57.9 3.1 42 5-48 535-576 (1032)
106 PRK09192 acyl-CoA synthetase; 97.5 0.00012 2.6E-09 51.7 3.6 47 3-51 517-566 (579)
107 PLN02736 long-chain acyl-CoA s 97.3 0.00068 1.5E-08 48.7 5.7 38 17-54 601-644 (651)
108 PRK07768 long-chain-fatty-acid 97.0 0.00062 1.3E-08 47.5 2.8 42 6-49 498-543 (545)
109 PRK08180 feruloyl-CoA synthase 96.8 0.0013 2.8E-08 46.9 2.9 50 3-54 536-599 (614)
110 PRK05850 acyl-CoA synthetase; 96.5 0.0027 5.8E-08 44.7 3.1 44 6-51 521-568 (578)
111 PRK12582 acyl-CoA synthetase; 95.3 0.017 3.7E-07 41.4 2.9 49 4-54 548-610 (624)
112 KOG1179|consensus 95.0 0.0075 1.6E-07 44.0 0.3 45 3-49 567-611 (649)
113 PLN02387 long-chain-fatty-acid 91.1 0.81 1.8E-05 33.6 5.6 40 13-54 647-692 (696)
114 PLN02861 long-chain-fatty-acid 90.6 0.69 1.5E-05 33.7 4.9 41 17-57 606-652 (660)
115 PLN02430 long-chain-fatty-acid 89.4 1.5 3.3E-05 32.0 5.8 40 17-56 606-651 (660)
116 PTZ00216 acyl-CoA synthetase; 89.2 1.3 2.9E-05 32.5 5.4 38 17-54 651-694 (700)
117 PLN02614 long-chain acyl-CoA s 88.0 1.5 3.3E-05 32.1 5.1 43 13-57 607-655 (666)
118 TIGR02155 PA_CoA_ligase phenyl 78.1 1.9 4.1E-05 29.5 2.1 33 4-42 383-417 (422)
119 PF03250 Tropomodulin: Tropomo 58.0 40 0.00086 20.7 4.6 49 2-50 24-74 (147)
120 PTZ00342 acyl-CoA synthetase; 52.1 67 0.0014 24.4 5.9 38 17-54 695-737 (746)
121 KOG1180|consensus 50.9 49 0.0011 25.0 4.9 47 6-55 619-673 (678)
122 PF12767 SAGA-Tad1: Transcript 40.5 74 0.0016 20.7 4.2 36 37-72 6-42 (252)
123 PF00036 EF-hand_1: EF hand; 34.7 46 0.00099 14.3 2.1 19 32-50 9-27 (29)
124 PF06092 DUF943: Enterobacteri 31.5 30 0.00065 21.4 1.2 16 26-41 43-58 (157)
125 PF02512 UK: Virulence determi 26.4 40 0.00086 18.8 1.0 11 62-72 50-60 (96)
126 COG3918 Predicted membrane pro 25.5 42 0.0009 20.2 1.1 15 29-43 62-76 (153)
127 PF12326 EOS1: N-glycosylation 25.1 1.1E+02 0.0024 18.8 2.9 18 53-70 5-22 (148)
128 TIGR03821 AblA_like_1 lysine-2 24.1 1.4E+02 0.0031 20.3 3.6 22 5-28 290-311 (321)
129 KOG0257|consensus 23.4 1.8E+02 0.0039 21.0 4.0 24 23-48 173-197 (420)
130 PF13405 EF-hand_6: EF-hand do 22.0 84 0.0018 13.2 2.0 18 33-50 10-27 (31)
131 TIGR03820 lys_2_3_AblA lysine- 21.9 1.3E+02 0.0027 21.6 3.1 23 5-29 302-324 (417)
132 PTZ00297 pantothenate kinase; 20.9 3.4E+02 0.0073 22.9 5.5 39 17-55 955-999 (1452)
133 PF13202 EF-hand_5: EF hand; P 20.4 88 0.0019 12.8 1.8 16 32-47 8-23 (25)
No 1
>KOG1176|consensus
Probab=99.05 E-value=3.3e-10 Score=80.42 Aligned_cols=48 Identities=33% Similarity=0.473 Sum_probs=45.7
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+++++|.+||+++ +++|+.|+.+.|++++|+|++|||.|+.+++.+..
T Consensus 485 lte~di~~~v~k~--l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~ 532 (537)
T KOG1176|consen 485 LTEKDIIEYVRKK--LPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKK 532 (537)
T ss_pred CCHHHHHHHHHhh--CChhhccCeEEEeccCCCCCcchHHHHHHHHHHHh
Confidence 6889999999999 99999999999999999999999999999998765
No 2
>KOG1177|consensus
Probab=98.94 E-value=1.6e-09 Score=76.22 Aligned_cols=50 Identities=36% Similarity=0.717 Sum_probs=46.5
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~ 53 (75)
++.++|+++|+.+ +++|++|+++.+++++|+|.+|||.|.+++++....+
T Consensus 540 ~t~E~lKa~Ck~k--laHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~~l 589 (596)
T KOG1177|consen 540 TTAETLKAMCKGK--LAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKGHL 589 (596)
T ss_pred ccHHHHHHHHhcc--cccccCCcEEEEeccCcccccccchhHHHHHHHHhhc
Confidence 4789999999999 9999999999999999999999999999999887543
No 3
>PRK09188 serine/threonine protein kinase; Provisional
Probab=98.76 E-value=1.7e-08 Score=68.94 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=42.6
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
++.+++.+||+++ |++ ++|+.+.+++++|+|++||++|+.++..+.
T Consensus 282 ~~~~el~~~l~~~--L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~ 327 (365)
T PRK09188 282 ADEKSLRARLAGA--KPP-KPPEHIQPVAALPRDADGTVRDDILRLIAM 327 (365)
T ss_pred CCHHHHHHHHHhh--chh-cCCcEEEEECCCCCCCCCCccHHHHHHHhh
Confidence 4678999999999 999 999999999999999999999999998753
No 4
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=98.75 E-value=2.3e-08 Score=68.87 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=45.5
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~ 54 (75)
+.+++.++++++ +++|++|+.+.+++++|+|++||++|+.+++.+.++++
T Consensus 401 ~~~~l~~~~~~~--L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 450 (452)
T PRK07445 401 SLEELKTAIKDQ--LSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRLG 450 (452)
T ss_pred CHHHHHHHHHHh--CCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHhhC
Confidence 467899999999 99999999999999999999999999999988766543
No 5
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=98.71 E-value=3e-08 Score=65.88 Aligned_cols=47 Identities=17% Similarity=0.349 Sum_probs=43.1
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
.+.+++.+++++. ++.|++|..+.+++++|+|++||++|+.|++.+.
T Consensus 310 ~~~~~i~~~~~~~--l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 356 (358)
T PRK07824 310 PTLEALRAHVART--LDRTAAPRELHVVDELPRRGIGKVDRRALVRRFA 356 (358)
T ss_pred cCHHHHHHHHHhh--CccccCCCEEEEecCCCCCCCccccHHHHHHHhh
Confidence 3567899999999 9999999999999999999999999999998764
No 6
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.70 E-value=2.9e-08 Score=69.78 Aligned_cols=47 Identities=32% Similarity=0.604 Sum_probs=44.7
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.++|+.+ ++.|++|+.+.+++++|+|++||++|+.+++....
T Consensus 481 ~~~~i~~~~~~~--l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 481 TAEELRAFLRKR--LALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred CHHHHHHHHHhh--hhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 689999999999 99999999999999999999999999999998765
No 7
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.69 E-value=3.3e-08 Score=68.73 Aligned_cols=49 Identities=29% Similarity=0.518 Sum_probs=44.9
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+...+++.|+.+.| ++.||+|.+|.+++++|.|+.|||+|+.|++.+..
T Consensus 490 ~~~~qlr~~L~~~G-lAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~ 538 (542)
T COG1021 490 LRAAQLRRFLRERG-LAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLAS 538 (542)
T ss_pred CCHHHHHHHHHHcc-hhhhcCCcceeecccCCCcccccccHHHHHHHhhh
Confidence 56789999999998 99999999999999999999999999999986643
No 8
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.64 E-value=6e-08 Score=67.89 Aligned_cols=48 Identities=29% Similarity=0.475 Sum_probs=43.9
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
+.+++.++++.+ +++|++|..+.+++++|+|++||++|+.|++....+
T Consensus 511 ~~~~l~~~~~~~--l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~ 558 (562)
T PRK05677 511 TKEQVMEHMRAN--LTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKK 558 (562)
T ss_pred CHHHHHHHHHHh--hhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHh
Confidence 567899999999 999999999999999999999999999999866554
No 9
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=98.64 E-value=6.4e-08 Score=69.35 Aligned_cols=44 Identities=14% Similarity=0.356 Sum_probs=41.6
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
++++++++.+ |++|++|+.+.+++++|+|++||++|+.|++.+.
T Consensus 582 ~~l~~~~~~~--l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~ 625 (652)
T TIGR01217 582 DRIKRTIRAG--LSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQ 625 (652)
T ss_pred HHHHHHHHhh--CCCCcCCCEEEECCCCCCCCCccChHHHHHHHHc
Confidence 5899999999 9999999999999999999999999999998864
No 10
>PRK12316 peptide synthase; Provisional
Probab=98.62 E-value=3.3e-08 Score=82.41 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=58.1
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhcC
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED----KMILIIAVIHCQVQAYLSGLLDS 74 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 74 (75)
+.++++++++++ |+.|++|..+.+++++|+|++||++|+.|.+.... ........++..++.+|+.+|+.
T Consensus 960 ~~~~l~~~l~~~--Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~e~~l~~iw~~vL~~ 1033 (5163)
T PRK12316 960 WREALKAHLAAS--LPEYMVPAQWLALERLPLTPNGKLDRKALPAPEASVAQQGYVAPRNALERTLAAIWQDVLGV 1033 (5163)
T ss_pred CHHHHHHHHHhh--CCCccCCCeEEEHhhCCCCCCCChhHHhhcCccccccccccCCCCCHHHHHHHHHHHHHhCC
Confidence 467899999999 99999999999999999999999999999764322 11223466788999999999874
No 11
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=98.61 E-value=9.7e-08 Score=68.95 Aligned_cols=49 Identities=16% Similarity=0.326 Sum_probs=43.0
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
++.+++.+++++++ ++.|++|+.+.+++++|+|++||++|+.|++.+..
T Consensus 665 ~~~~~l~~~~~~~~-l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 665 LTREKLQQYAREHG-VPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred cCHHHHHHHHHhcC-CCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence 35678999998754 89999999999999999999999999999986643
No 12
>PRK05691 peptide synthase; Validated
Probab=98.60 E-value=2e-08 Score=82.78 Aligned_cols=68 Identities=10% Similarity=0.230 Sum_probs=57.1
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhcC
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK-----MILIIAVIHCQVQAYLSGLLDS 74 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 74 (75)
++++.+++.+ |+.|++|..+.+++++|+|++||++|+.|.+..... ........+..++++|+.+|+.
T Consensus 4184 ~~l~~~l~~~--Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~~ 4256 (4334)
T PRK05691 4184 ERIKQRLRAE--LPDYMVPLHWLWLDRLPLNANGKLDRKALPALDIGQLQSQAYLAPRNELEQTLATIWADVLKV 4256 (4334)
T ss_pred HHHHHHHHhh--CChhhcCcceeecccCCCCCCCcccHhhcCCCccccccccccCCCCCHHHHHHHHHHHHHhCC
Confidence 5789999999 999999999999999999999999999997642211 1234578899999999999974
No 13
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=98.60 E-value=9.8e-08 Score=68.11 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=41.9
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+++.++++.+ +++|++|+.+.+++++|+|++||++|+.|++.+.+
T Consensus 581 ~~l~~~~~~~--L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~ 625 (655)
T PRK03584 581 ARIRTTIRTN--LSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHG 625 (655)
T ss_pred HHHHHHHHhh--CCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcC
Confidence 5799999999 99999999999999999999999999999987653
No 14
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=98.59 E-value=9.9e-08 Score=67.90 Aligned_cols=45 Identities=38% Similarity=0.579 Sum_probs=41.8
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
.++|.+++++. +++++.|+.|.|+++||+|.+|||.|+.||+...
T Consensus 477 ~~ei~~~vr~~--~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~ 521 (528)
T COG0365 477 AEEIRRHVARN--IGPHAIPRKIRFVDELPKTASGKIQRRLLRKILH 521 (528)
T ss_pred HHHHHHHHHhc--cCcccCCceEEEecCCCCCCcccHHHHHHHHHHh
Confidence 57899999999 8889999999999999999999999999998765
No 15
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.59 E-value=9.6e-08 Score=67.06 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=43.6
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.++++.+ |++|++|+.+.+++++|+|++||++|+.|++++..
T Consensus 511 ~~~~l~~~l~~~--L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~ 557 (576)
T PRK05620 511 TAERLRDQLRDR--LPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHLAD 557 (576)
T ss_pred cHHHHHHHHHhh--CccccCCeEEEEeccCCCCCcccCcHHHHHHHHhc
Confidence 357899999999 99999999999999999999999999999988764
No 16
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.59 E-value=3.2e-08 Score=74.61 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=56.8
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhcC
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED---KMILIIAVIHCQVQAYLSGLLDS 74 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 74 (75)
+.++++++++.+ |+.|++|..+.+++++|+|++||++|+.|+..... .........+..+..+|+.+|+.
T Consensus 921 ~~~~l~~~l~~~--Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~e~~l~~~~~~~l~~ 993 (1296)
T PRK10252 921 DTSALQAQLRER--LPPHMVPVVLLQLDQLPLSANGKLDRKALPLPELKAQVPGRAPKTGTETIIAAAFSSLLGC 993 (1296)
T ss_pred CHHHHHHHHHhh--CchhcCCcEEEEecCCCCCCCcChhHHhcCCCcccccccCCCCCCHHHHHHHHHHHHHhCC
Confidence 567899999999 99999999999999999999999999999763211 11123456778899999999864
No 17
>PRK07788 acyl-CoA synthetase; Validated
Probab=98.59 E-value=6.6e-08 Score=67.37 Aligned_cols=44 Identities=32% Similarity=0.587 Sum_probs=40.9
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~ 47 (75)
.+.++++++++++ +++|++|..+.+++++|+|++||++|+.|++
T Consensus 504 ~~~~~l~~~~~~~--l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 547 (549)
T PRK07788 504 LDEDAIKDYVRDN--LARYKVPRDVVFLDELPRNPTGKVLKRELRE 547 (549)
T ss_pred CCHHHHHHHHHHh--hhcCCCCcEEEEeCCCCCCCCcCEeHHHhhc
Confidence 3568899999999 9999999999999999999999999999875
No 18
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=98.58 E-value=6.9e-08 Score=68.06 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=43.7
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
++.+++.++|+.+ |+.|++|+.+.+++++|+|.+||++|+.|+++..+
T Consensus 517 ~~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 564 (600)
T PRK08279 517 FDLAALAAHLYER--LPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFD 564 (600)
T ss_pred CCHHHHHHHHHhh--CccccCCeEEEeecCCCCCcchhhhHHHHhhcCCC
Confidence 3568899999999 99999999999999999999999999999886544
No 19
>PLN03102 acyl-activating enzyme; Provisional
Probab=98.58 E-value=2.3e-07 Score=65.46 Aligned_cols=49 Identities=27% Similarity=0.417 Sum_probs=44.5
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~ 54 (75)
..++.++++.+ |++|++|..+.+++++|+|++||++|+.|++++.+...
T Consensus 509 ~~~l~~~~~~~--L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~~~~ 557 (579)
T PLN03102 509 ERDLIEYCREN--LPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKGLVV 557 (579)
T ss_pred HHHHHHHHHhh--cccccCCeEEEEcccCCCCCcccccHHHHHHHHHHhhh
Confidence 46799999999 99999999999999999999999999999998766443
No 20
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=98.58 E-value=8.3e-08 Score=68.80 Aligned_cols=45 Identities=27% Similarity=0.507 Sum_probs=41.4
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
++|+++++.+ +++|++|+.|.+++++|+|++||++|+.|++.+.+
T Consensus 579 ~~i~~~~~~~--l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 623 (647)
T PTZ00237 579 NEINNIITQD--IESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLND 623 (647)
T ss_pred HHHHHHHHhh--cCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcC
Confidence 4678899999 99999999999999999999999999999998754
No 21
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=98.57 E-value=8.1e-08 Score=68.32 Aligned_cols=46 Identities=28% Similarity=0.315 Sum_probs=42.6
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
.++|+++++++ |++|++|+.+.+++++|+|++||++|+.|++.+..
T Consensus 559 ~~~i~~~~~~~--L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~ 604 (628)
T TIGR02316 559 ETGMMDCVVRQ--LGAVARPARVYFVAALPKTRSGKLLRRSIQALAEG 604 (628)
T ss_pred HHHHHHHHHHh--cCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcC
Confidence 46899999999 99999999999999999999999999999987653
No 22
>PRK12467 peptide synthase; Provisional
Probab=98.55 E-value=3.6e-08 Score=81.04 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=58.5
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhcC
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED---KMILIIAVIHCQVQAYLSGLLDS 74 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 74 (75)
+.++++++++.+ |+.|++|..+.+++++|+|++||++|+.|.+.... ......+..+..++++|+.+|+.
T Consensus 3548 ~~~~l~~~l~~~--Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~~~~~~~~p~~~~e~~l~~i~~~vL~~ 3620 (3956)
T PRK12467 3548 WRETLRDHLAAS--LPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPDAKGSREYVAPRSEVEQQLAAIWADVLGV 3620 (3956)
T ss_pred cHHHHHHHHhcc--CChhhCCCeeeeeccCCCCCCCccchhhcCCCCccccccccCCCCHHHHHHHHHHHHHhCC
Confidence 457899999999 99999999999999999999999999999865432 11234567788999999999874
No 23
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=98.55 E-value=6e-08 Score=73.85 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=52.9
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhh
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI------------LIIAVIHCQVQAYLSGL 71 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 71 (75)
.++++++++++ |+.|++|..+.+++++|+|++||++|+.|+........ ......+..++.+|+.+
T Consensus 783 ~~~l~~~l~~~--Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v 860 (1389)
T TIGR03443 783 IKDIREYLKKK--LPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPDTAQLAAVAKNRSASAADEEFTETEREIRDLWLEL 860 (1389)
T ss_pred HHHHHHHHHhh--CCcccCCceEEEcccCCCCCCccccHhhcCCCchhhhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence 35789999999 99999999999999999999999999998642211111 12245667788899888
Q ss_pred hc
Q psy77 72 LD 73 (75)
Q Consensus 72 ~~ 73 (75)
|+
T Consensus 861 l~ 862 (1389)
T TIGR03443 861 LP 862 (1389)
T ss_pred hC
Confidence 75
No 24
>PRK07470 acyl-CoA synthetase; Validated
Probab=98.54 E-value=1.9e-07 Score=64.70 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=43.8
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
++.+++.+++++. +++|++|..+.+++++|+|++||++|+.+++++..
T Consensus 471 ~~~~~~~~~l~~~--l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 518 (528)
T PRK07470 471 VDEAELLAWLDGK--VARYKLPKRFFFWDALPKSGYGKITKKMVREELEE 518 (528)
T ss_pred CCHHHHHHHHHHh--hhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHh
Confidence 4567899999999 99999999999999999999999999999887654
No 25
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.53 E-value=2e-07 Score=64.98 Aligned_cols=47 Identities=34% Similarity=0.509 Sum_probs=43.4
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.++++++ +++|+.|+.+.+++++|+|++||++|+.+++.+.+
T Consensus 487 ~~~~l~~~~~~~--l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~ 533 (539)
T PRK07008 487 TREELLAFYEGK--VAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRD 533 (539)
T ss_pred CHHHHHHHHHhh--cccccCCeEEEEecCCCCCCccceeHHHHHHHHHh
Confidence 567899999999 99999999999999999999999999999987654
No 26
>PLN02654 acetate-CoA ligase
Probab=98.53 E-value=1.6e-07 Score=67.58 Aligned_cols=45 Identities=27% Similarity=0.424 Sum_probs=41.9
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
++|.++++.+ |++|++|+.+.+++++|+|++||++|+.|++.+.+
T Consensus 596 ~~l~~~~~~~--L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 596 KSLILTVRNQ--IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 640 (666)
T ss_pred HHHHHHHHHh--CCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcC
Confidence 4788999999 99999999999999999999999999999998764
No 27
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=98.53 E-value=1.5e-07 Score=65.91 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=41.7
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.++++++++.+. ++.|+.|+.+.+++++|+|++||++|+.|++.+..
T Consensus 488 ~~~~~~~~l~~~~-~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 535 (539)
T PRK06334 488 SISEVNDILKNSK-TSSILKISYHHQVESIPMLGTGKPDYCSLNALAKS 535 (539)
T ss_pred ChHHHHHHHHhcC-CcccccchheeeecccccccCCcccHHHHHHHHHH
Confidence 4578999998842 68999999999999999999999999999887544
No 28
>PLN02574 4-coumarate--CoA ligase-like
Probab=98.52 E-value=2.3e-07 Score=65.08 Aligned_cols=47 Identities=30% Similarity=0.410 Sum_probs=43.3
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.++++++ +++|+.|+.+.+++++|+|++||++|+.|++.+..
T Consensus 508 ~~~~l~~~~~~~--l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~ 554 (560)
T PLN02574 508 SQEAVINYVAKQ--VAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTN 554 (560)
T ss_pred CHHHHHHHHHHh--ccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhh
Confidence 567899999999 99999999999999999999999999999987643
No 29
>PLN03051 acyl-activating enzyme; Provisional
Probab=98.52 E-value=2.3e-07 Score=64.30 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=38.3
Q ss_pred CHHHHHHHH----hhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77 3 MIQHTDEVV----KGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53 (75)
Q Consensus 3 ~~~~l~~~~----~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~ 53 (75)
+.+++.++| +++ ++.|+.|..+.++++||+|++||++|+.|++.+....
T Consensus 441 ~~~~l~~~~~~~l~~~--l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 493 (499)
T PLN03051 441 RPEALQKKFQEAIQTN--LNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKEL 493 (499)
T ss_pred chHHHHHHHHHHHHhh--cCCccCCceEEEcCCCCCCCCccHHHHHHHHHHHHhh
Confidence 456676666 456 7776666789999999999999999999998665543
No 30
>PLN02246 4-coumarate--CoA ligase
Probab=98.50 E-value=2.4e-07 Score=64.46 Aligned_cols=45 Identities=29% Similarity=0.371 Sum_probs=42.0
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~ 49 (75)
+.++++++++.+ ++.|+.|..+.+++++|+|++||++|..|++.+
T Consensus 490 ~~~~l~~~l~~~--l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~ 534 (537)
T PLN02246 490 TEDEIKQFVAKQ--VVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKL 534 (537)
T ss_pred CHHHHHHHHHhh--CcCccccceEEEeccCCCCCcchhhHHHHHHHH
Confidence 467899999999 999999999999999999999999999998765
No 31
>PRK05852 acyl-CoA synthetase; Validated
Probab=98.49 E-value=1.9e-07 Score=64.90 Aligned_cols=46 Identities=15% Similarity=0.370 Sum_probs=42.8
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
+.+++.++++++ +++|++|+.+.+++++|+|++||++|+.|++.+.
T Consensus 486 ~~~~i~~~~~~~--l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~ 531 (534)
T PRK05852 486 TAEELVQFCRER--LAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFG 531 (534)
T ss_pred CHHHHHHHHHHh--cccccCCeEEEEhhhcCCCCCccccHHHHHHHhc
Confidence 567899999999 9999999999999999999999999999998764
No 32
>PRK07638 acyl-CoA synthetase; Validated
Probab=98.49 E-value=2.6e-07 Score=63.42 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=43.2
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.+++++. +++|++|+.+.+++++|+|++||++|+.|++.+..
T Consensus 435 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~ 481 (487)
T PRK07638 435 TKQQLKSFCLQR--LSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIEN 481 (487)
T ss_pred CHHHHHHHHHHH--hhcccCCcEEEEecccCCCCcccccHHHHHHHHhc
Confidence 567899999999 99999999999999999999999999999987654
No 33
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.49 E-value=3.4e-07 Score=63.54 Aligned_cols=46 Identities=37% Similarity=0.458 Sum_probs=42.1
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
+.+++.++|+++ ++.|++|..+.+++++|+|.+||++|+.|++...
T Consensus 496 ~~~~l~~~~~~~--l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~ 541 (546)
T PRK08314 496 TEEEIIAWAREH--MAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEK 541 (546)
T ss_pred CHHHHHHHHHHh--cccCCCCcEEEEecCCCCCCccceeHHHHHHHHh
Confidence 457899999999 9999999999999999999999999999987554
No 34
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=98.48 E-value=3.8e-07 Score=63.98 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=42.4
Q ss_pred CHHHHHHHHhh-CCCCCCCCCccEEEEe-ccCCCCCCCcchHHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKG-SMVIAHYKIPRYVEFV-ADFPKTVSGKIQKYVLSKQMEDKMI 54 (75)
Q Consensus 3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v-~~lP~t~~gKi~r~~l~~~~~~~~~ 54 (75)
+.+++.+++++ + |++|++|+.+.++ +++|+|++||++|+.|++++.....
T Consensus 506 ~~~~l~~~~~~~~--L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~~~~~ 557 (563)
T PLN02860 506 SSETLRHHCREKN--LSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLSHLQ 557 (563)
T ss_pred cHHHHHHHHhhCc--ccccccceEEEEEecCCCCCcccchhHHHHHHHHHHHHh
Confidence 45678999987 7 9999999998765 6799999999999999988766543
No 35
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=98.48 E-value=2.4e-07 Score=65.71 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=42.2
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
.+++.++++.+ +++|+.|..+.+++++|+|++||++|+.|++...+
T Consensus 560 ~~~i~~~~~~~--l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 605 (629)
T PRK10524 560 EKEIMALVDSQ--LGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEG 605 (629)
T ss_pred HHHHHHHHHhh--cCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence 35789999999 99999999999999999999999999999987653
No 36
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=98.48 E-value=2.7e-07 Score=64.71 Aligned_cols=44 Identities=34% Similarity=0.426 Sum_probs=41.1
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
+++.++++++ ++.|+.|+.+.+++++|+|++||++|+.|++...
T Consensus 515 ~~l~~~~~~~--l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~ 558 (570)
T PRK04319 515 EEIRGFVKKG--LGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWEL 558 (570)
T ss_pred HHHHHHHHHh--cccccCCcEEEEeCCCCCCCchhhhHHHHHHHHh
Confidence 5799999999 9999999999999999999999999999998753
No 37
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=98.47 E-value=3.2e-07 Score=65.05 Aligned_cols=46 Identities=30% Similarity=0.444 Sum_probs=42.6
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
++++++++++ +++|++|+.+.+++++|+|++||++|+.|++.+...
T Consensus 558 ~~l~~~~~~~--l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 603 (625)
T TIGR02188 558 KELRKHVRKE--IGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE 603 (625)
T ss_pred HHHHHHHHhh--cCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence 6799999999 999999999999999999999999999999886554
No 38
>PRK06060 acyl-CoA synthetase; Validated
Probab=98.47 E-value=2.2e-07 Score=66.89 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=39.9
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~ 49 (75)
+++.++++++ |+.|++|..+.+++++|+|++||++|+.|++.+
T Consensus 448 ~~i~~~l~~~--L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 448 RDLHRGLLNR--LSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred HHHHHHHHHh--CCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence 4788899999 999999999999999999999999999998754
No 39
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=98.47 E-value=3.7e-07 Score=63.66 Aligned_cols=47 Identities=34% Similarity=0.521 Sum_probs=43.2
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.++++.+ +++|++|+.+.+++++|+|++||++|+.|++.+..
T Consensus 488 ~~~~l~~~~~~~--l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~ 534 (542)
T PRK06018 488 TREEILKYMDGK--IAKWWMPDDVAFVDAIPHTATGKILKTALREQFKD 534 (542)
T ss_pred CHHHHHHHHHhh--CccccCCcEEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 567899999999 99999999999999999999999999999987644
No 40
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=98.47 E-value=4.1e-07 Score=62.15 Aligned_cols=47 Identities=26% Similarity=0.517 Sum_probs=43.2
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
.+.+++.++++.. ++.|++|..+.+++++|+|++||++|+.|++.+.
T Consensus 435 ~~~~~l~~~~~~~--l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~ 481 (483)
T PRK03640 435 VTEEELRHFCEEK--LAKYKVPKRFYFVEELPRNASGKLLRHELKQLVE 481 (483)
T ss_pred CCHHHHHHHHHHh--ccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHh
Confidence 3567899999999 9999999999999999999999999999998764
No 41
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=98.47 E-value=2.2e-07 Score=63.41 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=44.2
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
+.+++.++++++ +++|++|..+.+++++|+|.+||++|+.|++++...
T Consensus 407 ~~~~l~~~~~~~--l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~ 454 (458)
T PRK09029 407 AVVNLAEWLQDK--LARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQ 454 (458)
T ss_pred CHHHHHHHHHhh--chhccCCeEEEEecccccCcCCCcCHHHHHHHHHhc
Confidence 567899999999 999999999999999999999999999999887654
No 42
>PRK06839 acyl-CoA synthetase; Validated
Probab=98.47 E-value=4.2e-07 Score=62.17 Aligned_cols=46 Identities=35% Similarity=0.559 Sum_probs=42.3
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
+.++++++++.. ++.|++|..+.+++++|+|++||++|..++++..
T Consensus 449 ~~~~l~~~~~~~--l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~ 494 (496)
T PRK06839 449 IEKDVIEHCRLF--LAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLK 494 (496)
T ss_pred CHHHHHHHHHhh--CcCCCCCcEEEEeccCCCCccccccHHHHHHHhh
Confidence 567899999999 9999999999999999999999999999987653
No 43
>PRK12467 peptide synthase; Provisional
Probab=98.46 E-value=1.2e-07 Score=78.19 Aligned_cols=70 Identities=14% Similarity=0.267 Sum_probs=57.6
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhcC
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK----MILIIAVIHCQVQAYLSGLLDS 74 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 74 (75)
..+++++++++. |+.|++|..+.+++++|+|++||++|+.|.+..... ........+..++.+|+.+|+.
T Consensus 972 ~~~~l~~~l~~~--Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~~~~~~~~~p~~~~e~~l~~i~~~vL~~ 1045 (3956)
T PRK12467 972 TRDELKAQLRQV--LPDYMVPAHLLLLDSLPLTPNGKLDRKALPKPDASAVQATFVAPQTELEKRLAAIWADVLKV 1045 (3956)
T ss_pred CHHHHHHHHHhh--CchhcCCceEeeecccCCCCCCCcCHhhcCCcccccccccccCCCCHHHHHHHHHHHHHhCC
Confidence 357899999999 999999999999999999999999999997653221 1223456788999999999874
No 44
>PRK12316 peptide synthase; Provisional
Probab=98.45 E-value=9e-08 Score=79.96 Aligned_cols=69 Identities=17% Similarity=0.323 Sum_probs=56.9
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhcC
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM----ILIIAVIHCQVQAYLSGLLDS 74 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 74 (75)
.++++++++++ |+.||+|..+.+++++|+|++||++|+.|.+...... ....+..+..++++|+.+|+.
T Consensus 3499 ~~~l~~~l~~~--Lp~ymvP~~~~~~~~lP~t~~GKvdr~~L~~~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~~ 3571 (5163)
T PRK12316 3499 REALKAHLKAS--LPEYMVPAHLLFLERMPLTPNGKLDRKALPRPDAALLQQDYVAPVNELERRLAAIWADVLKL 3571 (5163)
T ss_pred HHHHHHHHHhh--CCcccCcceeeeHhhcCCCCCcchhHHhcCCCccccccccccCCCCHHHHHHHHHHHHHhCC
Confidence 46799999999 9999999999999999999999999999975432211 123467788999999999874
No 45
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.45 E-value=4.6e-07 Score=63.15 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=48.0
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILIIA 58 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~~~~~ 58 (75)
+.+++.++++.+ +++|+.|..+.+++++|+|++||++|+.|++.+......++.
T Consensus 478 ~~~~l~~~l~~~--l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~~~~~ 531 (542)
T PRK07786 478 TLEDLAEFLTDR--LARYKHPKALEIVDALPRNPAGKVLKTELRERYGACVNVERR 531 (542)
T ss_pred CHHHHHHHHHhh--ccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhhchhhc
Confidence 457899999999 999999999999999999999999999999988776655543
No 46
>PRK06145 acyl-CoA synthetase; Validated
Probab=98.44 E-value=3.9e-07 Score=62.53 Aligned_cols=46 Identities=26% Similarity=0.551 Sum_probs=42.3
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
+.+++.++++.+ +++|+.|..+.+++++|+|++||++|+.|+++..
T Consensus 451 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 451 TLEALDRHCRQR--LASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred CHHHHHHHHHHh--hhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 467899999999 9999999999999999999999999999998653
No 47
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.44 E-value=5.1e-07 Score=63.24 Aligned_cols=49 Identities=18% Similarity=0.414 Sum_probs=44.5
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~ 53 (75)
+.+++.++++.+ +++|++|..+.+++++|+|.+||++|+.|++++....
T Consensus 523 ~~~~l~~~~~~~--l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~~~ 571 (573)
T PRK05605 523 DPEGLRAYCREH--LTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEKL 571 (573)
T ss_pred CHHHHHHHHHHh--CccccCCcEEEEeccCCCCCcccccHHHHHHHHHHHh
Confidence 567899999999 9999999999999999999999999999998776543
No 48
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=98.44 E-value=4.1e-07 Score=63.65 Aligned_cols=46 Identities=41% Similarity=0.587 Sum_probs=42.6
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
+..++.++++++ ++.|++|..+.+++++|+|++||++|+.++++..
T Consensus 478 ~~~~~~~~~~~~--l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~ 523 (542)
T PRK06155 478 EPVALVRHCEPR--LAYFAVPRYVEFVAALPKTENGKVQKFVLREQGV 523 (542)
T ss_pred CHHHHHHHHHhh--CcCccCCcEEEEeccCCCCcccceeHHHHHhhcc
Confidence 567899999999 9999999999999999999999999999988653
No 49
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=98.44 E-value=4.4e-07 Score=64.56 Aligned_cols=47 Identities=30% Similarity=0.439 Sum_probs=42.9
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
.++|.++++++ ++.|+.|+.+.+++++|+|++||++|+.|++.....
T Consensus 565 ~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 611 (637)
T PRK00174 565 RKELRNWVRKE--IGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE 611 (637)
T ss_pred HHHHHHHHHhh--cCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 46899999999 999999999999999999999999999999876544
No 50
>PRK07529 AMP-binding domain protein; Validated
Probab=98.43 E-value=6.2e-07 Score=64.02 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=42.8
Q ss_pred CCHHHHHHHHhhCCCCC-CCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIA-HYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~-~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
.+.+++.++++.+ ++ ++++|+.+.+++++|+|++||++|+.|++.+..
T Consensus 522 ~~~~~l~~~~~~~--l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~~ 570 (632)
T PRK07529 522 ATEAELLAFARDH--IAERAAVPKHVRILDALPKTAVGKIFKPALRRDAIR 570 (632)
T ss_pred CCHHHHHHHHHHh--cchhccCCcEEEEecCCCCCCCCcccHHHHHHHHHH
Confidence 3578899999999 86 579999999999999999999999999987654
No 51
>PRK05691 peptide synthase; Validated
Probab=98.43 E-value=1.8e-07 Score=77.38 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=56.9
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhcC
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED--KMILIIAVIHCQVQAYLSGLLDS 74 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 74 (75)
+.++++++++.+ |+.|++|..+.+++++|+|++||++|+.|++.... .........+..++.+|+.+|+.
T Consensus 1582 ~~~~l~~~l~~~--Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~~ 1653 (4334)
T PRK05691 1582 EAERLKAALAAE--LPEYMVPAQLIRLDQMPLGPSGKLDRRALPEPVWQQREHVEPRTELQQQIAAIWREVLGL 1653 (4334)
T ss_pred CHHHHHHHHHHh--CccccCCcEEEEccccCCCCCCCcChhhcCcccccccccCCCCCHHHHHHHHHHHHHhCC
Confidence 456899999999 99999999999999999999999999999764321 11123456778899999999864
No 52
>PRK12583 acyl-CoA synthetase; Provisional
Probab=98.42 E-value=6.2e-07 Score=62.31 Aligned_cols=48 Identities=40% Similarity=0.729 Sum_probs=43.7
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
+.+++..+++++ |+.|+.|..+.+++++|+|++||++|+.|+++...+
T Consensus 506 ~~~~i~~~~~~~--L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~ 553 (558)
T PRK12583 506 SEEELREFCKAR--IAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEE 553 (558)
T ss_pred CHHHHHHHHHhh--cccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhh
Confidence 467899999999 999999999999999999999999999999876543
No 53
>PRK07798 acyl-CoA synthetase; Validated
Probab=98.42 E-value=3.6e-07 Score=62.79 Aligned_cols=47 Identities=23% Similarity=0.341 Sum_probs=43.3
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
.+.+++.++++.+ ++.|++|..+.+++++|+|++||++|+.+++++.
T Consensus 485 ~~~~~l~~~l~~~--l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~ 531 (533)
T PRK07798 485 PDLAELRAHCRSS--LAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAA 531 (533)
T ss_pred CCHHHHHHHHhhh--cccCCCCeEEEEcccCCCCCcchhhHHHHhhhhc
Confidence 3568899999999 9999999999999999999999999999998764
No 54
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.42 E-value=5.1e-07 Score=63.14 Aligned_cols=48 Identities=29% Similarity=0.497 Sum_probs=43.7
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
.+.+++.++++.+ ++.|+.|..+.+++++|+|++||++|+.|+++...
T Consensus 508 ~~~~~l~~~~~~~--l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~ 555 (563)
T PRK06710 508 CSEEELNQFARKY--LAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKR 555 (563)
T ss_pred CCHHHHHHHHHHh--cccccCCcEEEEcccCCCCccchhhHHHHHHHHhh
Confidence 3567899999999 99999999999999999999999999999887654
No 55
>PRK09088 acyl-CoA synthetase; Validated
Probab=98.42 E-value=6.7e-07 Score=61.32 Aligned_cols=47 Identities=28% Similarity=0.518 Sum_probs=43.0
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.++++.+ +++|++|..+.+++++|+|++||++|+.|++++..
T Consensus 439 ~~~~l~~~~~~~--l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~ 485 (488)
T PRK09088 439 DLERIRSHLSTR--LAKYKVPKHLRLVDALPRTASGKLQKARLRDALAA 485 (488)
T ss_pred CHHHHHHHHHhh--CcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHh
Confidence 467899999999 99999999999999999999999999999987654
No 56
>PRK08315 AMP-binding domain protein; Validated
Probab=98.41 E-value=7.5e-07 Score=62.01 Aligned_cols=49 Identities=45% Similarity=0.879 Sum_probs=44.4
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~ 53 (75)
+.+++.++++++ ++.|++|..+.+++++|+|++||++|..|+++.....
T Consensus 505 ~~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~~ 553 (559)
T PRK08315 505 TEEDVRDFCRGK--IAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEEL 553 (559)
T ss_pred CHHHHHHHHHhh--cccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhhh
Confidence 567899999999 9999999999999999999999999999998766543
No 57
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=98.40 E-value=1.5e-07 Score=50.45 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=26.9
Q ss_pred HHHHHHHHhhCCCCCCCCCccE--EEEecc-CCCCCCCc
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRY--VEFVAD-FPKTVSGK 39 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~--i~~v~~-lP~t~~gK 39 (75)
.++++++++.+ |++|++|+. +..+++ ||+|++||
T Consensus 37 ~~~i~~~~~~~--l~~~~~P~~~~~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 37 EEEIRDHLRDK--LPPYMVPRRIRFVRLDEELPRTPSGK 73 (73)
T ss_dssp HHHHHHHHHHH--S-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred ecccccchhhh--CCCcceeeEEEEccccCcCCCCCCCC
Confidence 47899999999 999999954 444577 99999998
No 58
>PRK13390 acyl-CoA synthetase; Provisional
Probab=98.37 E-value=3.9e-07 Score=62.74 Aligned_cols=40 Identities=43% Similarity=0.704 Sum_probs=37.4
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS 46 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~ 46 (75)
+++.++++.+ |+.|+.|..+.+++++|+|++||++|+.|+
T Consensus 462 ~~l~~~~~~~--l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 462 RELIDYTRSR--IAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred HHHHHHHHHh--cccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 5789999999 999999999999999999999999998874
No 59
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.37 E-value=6.2e-07 Score=67.31 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=41.5
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
++.++|+++++ + ++.|++|+.+.+++++|+|++||++|+.|++...
T Consensus 912 ~~~~~L~~~l~-~--l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~l 957 (994)
T PRK07868 912 ITAADLTEALA-S--LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI 957 (994)
T ss_pred CCHHHHHHHHH-h--CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCC
Confidence 46789999997 6 9999999999999999999999999999987643
No 60
>PLN03052 acetate--CoA ligase; Provisional
Probab=98.36 E-value=7.4e-07 Score=65.03 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=40.3
Q ss_pred CHHHHHH----HHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77 3 MIQHTDE----VVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53 (75)
Q Consensus 3 ~~~~l~~----~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~ 53 (75)
+.+++++ +++++ +++++.|+.|.+++++|+|++||++|+.|++.+....
T Consensus 671 ~~~~L~~~i~~~i~~~--l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~~~ 723 (728)
T PLN03052 671 DLNELKKIFNSAIQKK--LNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQEL 723 (728)
T ss_pred CHHHHHHHHHHHHHhh--cCCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHhhh
Confidence 3455555 46678 8999999999999999999999999999998775543
No 61
>KOG1175|consensus
Probab=98.35 E-value=6.2e-07 Score=64.88 Aligned_cols=47 Identities=36% Similarity=0.548 Sum_probs=43.2
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
.++|..+++.. +++|+.|+.|.+++.||+|.+||+-|+.||+....+
T Consensus 557 ~kel~~~VR~~--igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 557 TKELVKHVRSV--IGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred HHHHHHHHHhh--cCcccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence 36788999999 999999999999999999999999999999987654
No 62
>PRK07514 malonyl-CoA synthase; Validated
Probab=98.35 E-value=1.2e-06 Score=60.17 Aligned_cols=47 Identities=34% Similarity=0.540 Sum_probs=43.0
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.++++++ +++|++|..+.+++++|+|++||++|+.+++.+..
T Consensus 455 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~ 501 (504)
T PRK07514 455 DEAAILAALKGR--LARFKQPKRVFFVDELPRNTMGKVQKNLLREQYAD 501 (504)
T ss_pred CHHHHHHHHHhh--cccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHh
Confidence 467899999999 99999999999999999999999999999887654
No 63
>PRK08316 acyl-CoA synthetase; Validated
Probab=98.34 E-value=1.3e-06 Score=60.08 Aligned_cols=48 Identities=27% Similarity=0.432 Sum_probs=43.9
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
+.+++.++++.+ ++.|+.|..+.+++++|+|++||++|+.+++.+.+.
T Consensus 473 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~ 520 (523)
T PRK08316 473 TEDELIAHCRAR--LAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGA 520 (523)
T ss_pred CHHHHHHHHHHh--cccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence 467899999999 999999999999999999999999999999887653
No 64
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=98.34 E-value=6.7e-07 Score=61.36 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=40.2
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~ 49 (75)
+++.++++.+ +++|++|+.+.+++++|+|++||++|+.+++++
T Consensus 458 ~~i~~~~~~~--l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~ 500 (502)
T TIGR01734 458 KAIKKELKKS--LPAYMIPRKFIYRDQLPLTANGKIDRKALAEEV 500 (502)
T ss_pred HHHHHHHhhh--ChhhcCCcEEEEccccCCCCCCcccHHHHHHhh
Confidence 5688999999 999999999999999999999999999999864
No 65
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.34 E-value=1.3e-06 Score=65.55 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=43.4
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~ 53 (75)
+.+++.++++++. +++|++|..+.+++++|+|++||++|+.+++...+..
T Consensus 1085 ~~~~l~~~~~~~~-l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 1134 (1140)
T PRK06814 1085 TRAAFLAHAKAAG-ASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAA 1134 (1140)
T ss_pred CHHHHHHHHHHcC-CCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhh
Confidence 5678899998632 9999999999999999999999999999998776543
No 66
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=98.34 E-value=8.5e-07 Score=60.68 Aligned_cols=44 Identities=25% Similarity=0.454 Sum_probs=40.3
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
+++.++++++ ++.|++|+.+.+++++|+|++||++|+.+++++.
T Consensus 459 ~~l~~~~~~~--l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 459 KAIKKELKER--LMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVN 502 (503)
T ss_pred HHHHHHHHhh--CccccCCeEEEEeccCCCCCCCCCcHHHHHHHhc
Confidence 4689999999 9999999999999999999999999999987653
No 67
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=98.33 E-value=2.1e-06 Score=59.81 Aligned_cols=53 Identities=26% Similarity=0.514 Sum_probs=45.3
Q ss_pred CHHHHHHHHh-hCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVK-GSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILII 57 (75)
Q Consensus 3 ~~~~l~~~~~-~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~~~~ 57 (75)
+.+++.+++. .. ++.|++|..+.+++++|+|.+||++|+.|++.+.++...+.
T Consensus 489 ~~~~~~~~~~~~~--l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~~~~~ 542 (547)
T PRK06087 489 TLEEVVAFFSRKR--VAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRLTQDV 542 (547)
T ss_pred CHHHHHHHHHhcc--ccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHhhhhh
Confidence 4567788775 57 99999999999999999999999999999998887765544
No 68
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=98.33 E-value=1.3e-06 Score=60.97 Aligned_cols=47 Identities=36% Similarity=0.556 Sum_probs=43.3
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.++++.+ ++.|+.|+.+.+++++|+|++||++|+.|++++..
T Consensus 495 ~~~~l~~~~~~~--l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~ 541 (546)
T PLN02330 495 SEEDILNFVAAN--VAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLS 541 (546)
T ss_pred CHHHHHHHHHHh--cccccCceEEEEeccCCCCCCcceeHHHHHHHHHh
Confidence 457899999999 99999999999999999999999999999988754
No 69
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=98.33 E-value=7.9e-07 Score=62.05 Aligned_cols=44 Identities=30% Similarity=0.512 Sum_probs=41.1
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~ 48 (75)
+.+++.++++.+ ++.|++|+.+.+++++|+|++||++|+.|++.
T Consensus 514 ~~~~l~~~~~~~--l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 514 TAEDVKAHARAN--LTGYKQPRIIEFRKELPKTNVGKILRRELRDA 557 (560)
T ss_pred CHHHHHHHHHHh--hhhccCCeEEEEhhhCCCCccccccHHHHHHh
Confidence 467899999999 99999999999999999999999999999875
No 70
>PRK13382 acyl-CoA synthetase; Provisional
Probab=98.33 E-value=7.1e-07 Score=62.32 Aligned_cols=43 Identities=26% Similarity=0.524 Sum_probs=39.9
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~ 47 (75)
+.++++++++.+ ++.|++|+.+.+++++|+|++||++|+.|++
T Consensus 494 ~~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 494 TPETLKQHVRDN--LANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred CHHHHHHHHHHh--ccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 467899999999 9999999999999999999999999998863
No 71
>PRK07867 acyl-CoA synthetase; Validated
Probab=98.32 E-value=1.1e-06 Score=61.38 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=42.5
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
++.+++.++++.+..+++|++|..+.+++++|+|++||++|+.|+++..+
T Consensus 458 ~~~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~ 507 (529)
T PRK07867 458 FDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVD 507 (529)
T ss_pred CCHHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCC
Confidence 45778999998621199999999999999999999999999999987643
No 72
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=98.32 E-value=1.5e-06 Score=59.95 Aligned_cols=48 Identities=29% Similarity=0.418 Sum_probs=43.7
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
+.+++.+++++. ++.|+.|..+.+++++|+|++||++|+.|++.+...
T Consensus 457 ~~~~l~~~l~~~--l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~ 504 (509)
T PRK12406 457 DEADIRAQLKAR--LAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWAN 504 (509)
T ss_pred CHHHHHHHHHHh--cccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhh
Confidence 568899999999 999999999999999999999999999998866543
No 73
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=98.32 E-value=7.7e-07 Score=61.15 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=40.1
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~ 47 (75)
+.+++.++++++ ++++++|..+.+++++|+|.+||++|+.|++
T Consensus 472 ~~~~l~~~l~~~--l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 472 DRAALLAECRAR--LPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred CHHHHHHHHHhh--CccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 567899999999 9999999999999999999999999999864
No 74
>PRK13391 acyl-CoA synthetase; Provisional
Probab=98.30 E-value=1.4e-06 Score=60.26 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=42.0
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
.+++.++++++ ++.|+.|..+.+++++|+|++||++|+.+++.+..
T Consensus 464 ~~~l~~~~~~~--l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 464 AAELIAFCRQR--LSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred HHHHHHHHHhh--cccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence 46899999999 99999999999999999999999999999987643
No 75
>PRK06164 acyl-CoA synthetase; Validated
Probab=98.30 E-value=1.5e-06 Score=60.31 Aligned_cols=49 Identities=29% Similarity=0.379 Sum_probs=44.3
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCC---cchHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSG---KIQKYVLSKQMEDKM 53 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~g---Ki~r~~l~~~~~~~~ 53 (75)
+.+++.++|+++ +++|++|+.+.+++.+|+|++| |++|+.|++.+....
T Consensus 483 ~~~~l~~~~~~~--l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~ 534 (540)
T PRK06164 483 DEAGLMAACREA--LAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARL 534 (540)
T ss_pred CHHHHHHHHHhh--cccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhh
Confidence 567899999999 9999999999999999999999 999999998766544
No 76
>PRK06178 acyl-CoA synthetase; Validated
Probab=98.30 E-value=1.7e-06 Score=60.60 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=41.6
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.++++++ ++.|++|. +.+++++|+|++||++|+.+++.+..
T Consensus 520 ~~~~l~~~~~~~--l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~ 565 (567)
T PRK06178 520 TAAALQAWCREN--MAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEE 565 (567)
T ss_pred CHHHHHHHHHhc--CcccCCce-EEEeccCCCCCccceeHHHHHHHHHh
Confidence 578899999999 99999996 88899999999999999999887643
No 77
>PRK05857 acyl-CoA synthetase; Validated
Probab=98.29 E-value=1.2e-06 Score=61.29 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=39.1
Q ss_pred HHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 6 HTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 6 ~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
.+.+++++. +++|++|+.+.+++++|+|++||++|+.|++.+.+.
T Consensus 488 ~~~~~~~~~--l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~~ 532 (540)
T PRK05857 488 TIAARFRRE--SEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATAD 532 (540)
T ss_pred HHHHHHHhh--hccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhhc
Confidence 344566788 999999999999999999999999999999877653
No 78
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.29 E-value=1.1e-06 Score=60.33 Aligned_cols=43 Identities=30% Similarity=0.583 Sum_probs=40.0
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~ 47 (75)
+.+++.++++.+ +++|+.|..+.+++++|+|++||++|..+++
T Consensus 470 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 470 TEEELIAYCREH--LAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred CHHHHHHHHHhh--cccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 567899999999 9999999999999999999999999999874
No 79
>PRK07787 acyl-CoA synthetase; Validated
Probab=98.29 E-value=9.7e-07 Score=60.55 Aligned_cols=43 Identities=28% Similarity=0.372 Sum_probs=40.3
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~ 47 (75)
+.+++.++++++ +++|+.|..+.+++++|+|++||++|+.|++
T Consensus 427 ~~~~l~~~l~~~--l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 427 AADELIDFVAQQ--LSVHKRPREVRFVDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred CHHHHHHHHHhh--cccccCCcEEEEeccCCCCCCccccHHHhcc
Confidence 567899999999 9999999999999999999999999999875
No 80
>PRK08308 acyl-CoA synthetase; Validated
Probab=98.29 E-value=1.3e-06 Score=59.18 Aligned_cols=43 Identities=26% Similarity=0.455 Sum_probs=39.1
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS 46 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~ 46 (75)
++.++++++++++ ++.|++|..+.+++++|+|++||++|+.|+
T Consensus 366 ~~~~~l~~~l~~~--l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 366 IDPVQLREWCIQH--LAPYQVPHEIESVTEIPKNANGKVSRKLLE 408 (414)
T ss_pred CCHHHHHHHHHHh--CccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence 3567899999999 999999999999999999999999999543
No 81
>PRK06188 acyl-CoA synthetase; Validated
Probab=98.28 E-value=2.2e-06 Score=59.35 Aligned_cols=46 Identities=26% Similarity=0.288 Sum_probs=42.3
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
+.+++.++++.. ++.|+.|..+.+++++|+|++||++|..|++.+.
T Consensus 471 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~ 516 (524)
T PRK06188 471 DAAELQAHVKER--KGSVHAPKQVDFVDSLPLTALGKPDKKALRARYW 516 (524)
T ss_pred CHHHHHHHHHHh--cccCCCCcEEEEecCCCCCccccccHHHHHHHHH
Confidence 457899999999 9999999999999999999999999999998763
No 82
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.28 E-value=2.2e-06 Score=63.96 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=41.2
Q ss_pred CHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.+++.+ . +++|+.|..+.+++++|+|++||++|+.|++...+
T Consensus 1096 ~~~~l~~~~~~~~--l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~ 1143 (1146)
T PRK08633 1096 DVEELKRAIKESG--LPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALA 1143 (1146)
T ss_pred CHHHHHHHHHhcC--CCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHH
Confidence 46788888875 6 99999999999999999999999999999986543
No 83
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.28 E-value=2e-06 Score=58.92 Aligned_cols=47 Identities=32% Similarity=0.630 Sum_probs=43.1
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+..++.++++.+ ++.|..|..+.+++++|+|++||++|..+++.+.+
T Consensus 473 ~~~~l~~~l~~~--l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 473 DAKELRAFLRGR--LAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAE 519 (521)
T ss_pred CHHHHHHHHHHh--ccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhc
Confidence 567899999999 99999999999999999999999999999987653
No 84
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=98.28 E-value=1.3e-06 Score=61.25 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=40.8
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~ 48 (75)
+.+++.++++++ ++.|++|..+.+++++|+|++||++|+.|++.
T Consensus 518 ~~~~i~~~~~~~--l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 518 SVEELKAYCKEN--FTGYKVPKHIVLRDSLPMTPVGKILRRELRDI 561 (562)
T ss_pred CHHHHHHHHHHh--cccccCCcEEEEeccCCCCCCCceeHHHHHhh
Confidence 467899999999 99999999999999999999999999999864
No 85
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=98.27 E-value=6.8e-07 Score=62.25 Aligned_cols=47 Identities=28% Similarity=0.420 Sum_probs=40.3
Q ss_pred CHHHHHHHHhhCCCCCCC--CCccEEEEec--cCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHY--KIPRYVEFVA--DFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~--~~P~~i~~v~--~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.++++++ ++.| ++|+.+.+++ +||+|++||++|+.|++.+..
T Consensus 472 ~~~~~~~~~~~~--l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 472 DEAGARSEVVQR--VASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred chHHHHHHHHHH--HHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHHHh
Confidence 345677888888 8887 8999999998 899999999999999986643
No 86
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.27 E-value=2.5e-06 Score=58.73 Aligned_cols=46 Identities=30% Similarity=0.551 Sum_probs=42.1
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
+++.++++.+ ++.|+.|..+.+++++|+|++||++|+.|++.+...
T Consensus 452 ~~i~~~~~~~--l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 497 (502)
T PRK08276 452 AELIAWLRGR--LAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEG 497 (502)
T ss_pred HHHHHHHHhh--ccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhh
Confidence 3788999999 999999999999999999999999999999886554
No 87
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=98.26 E-value=2.5e-06 Score=59.54 Aligned_cols=47 Identities=30% Similarity=0.434 Sum_probs=41.7
Q ss_pred CHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.+++.+ . ++.|++|..+.+++++|+|.+||++|..|++.+..
T Consensus 497 ~~~~l~~~~~~~~--l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~ 544 (547)
T PRK13295 497 DFEEMVEFLKAQK--VAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRG 544 (547)
T ss_pred CHHHHHHHHHhcc--CccccCCcEEEEeccCCCCCCccccHHHHHHHHhc
Confidence 45788899986 7 99999999999999999999999999999876643
No 88
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.26 E-value=2e-06 Score=60.11 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=44.1
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~ 53 (75)
+.+++.+++..+ ++.|+.|..+.+++++|+|++||++|+.|+++..++.
T Consensus 509 ~~~~l~~~l~~~--l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~ 557 (560)
T PRK08974 509 TEEELITHCRRH--LTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAKV 557 (560)
T ss_pred CHHHHHHHHHhh--cccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhhh
Confidence 457899999999 9999999999999999999999999999998776553
No 89
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=98.26 E-value=2.9e-06 Score=59.21 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=42.1
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.++++... ++.|+.|..+.+++++|+|++||++|+.|++.+..
T Consensus 485 ~~~~l~~~~~~~~-l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~ 532 (536)
T PRK10946 485 KAVQLRRFLREQG-IAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 532 (536)
T ss_pred CHHHHHHHHHhCC-ccccccCcEEEEeccCCCCCCCcccHHHHHHHHHh
Confidence 5678999998632 99999999999999999999999999999887654
No 90
>PRK13388 acyl-CoA synthetase; Provisional
Probab=98.24 E-value=2.1e-06 Score=60.08 Aligned_cols=49 Identities=24% Similarity=0.252 Sum_probs=41.6
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
++.+++.++++.+..+++|++|..+.+++++|+|++||++|+.|++...
T Consensus 457 ~~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~ 505 (540)
T PRK13388 457 FDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGW 505 (540)
T ss_pred CCHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhcc
Confidence 3567889998752129999999999999999999999999999998754
No 91
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=98.24 E-value=1.2e-06 Score=60.45 Aligned_cols=42 Identities=31% Similarity=0.502 Sum_probs=38.7
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS 46 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~ 46 (75)
+.+++..+++.+ +++|++|..+.+++++|+|++||++|+.|+
T Consensus 476 ~~~~l~~~~~~~--l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 476 SEEEFFAFCEQN--MAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred CHHHHHHHHHhh--cccccCCcEEEEeccCCCCCccceehhhcC
Confidence 467899999999 999999999999999999999999998763
No 92
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=98.21 E-value=2.4e-06 Score=59.66 Aligned_cols=44 Identities=32% Similarity=0.547 Sum_probs=40.6
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~ 48 (75)
+.+++.+++.++ ++.|+.|..+.+++++|+|++||++|+.++++
T Consensus 512 ~~~~l~~~~~~~--l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 512 TEEDVKAFCKER--LTNYKRPKFVEFRTELPKTNVGKILRRELRDG 555 (557)
T ss_pred CHHHHHHHHHHh--cccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence 457899999999 99999999999999999999999999998764
No 93
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=98.14 E-value=2.6e-06 Score=59.37 Aligned_cols=42 Identities=26% Similarity=0.520 Sum_probs=38.7
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS 46 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~ 46 (75)
+.+++.++++++ +++|++|..+.+++++|+|++||++|+.|+
T Consensus 500 ~~~~l~~~~~~~--l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 500 SLDELRAFLAGK--LGKHELPVAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred CHHHHHHHHHhh--cccccCCcEEEEeccCCCCcccceeHhhcC
Confidence 567899999999 999999999999999999999999998763
No 94
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.14 E-value=2.2e-06 Score=61.00 Aligned_cols=46 Identities=26% Similarity=0.248 Sum_probs=39.8
Q ss_pred CHHHHHHHHhhCCCCCC-CC-CccEEEEec--cCCCCCCCcchHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAH-YK-IPRYVEFVA--DFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~-~~-~P~~i~~v~--~lP~t~~gKi~r~~l~~~~~ 50 (75)
+.+++.++|+++ ++. |+ .|+.+.+++ +||+|++|||+|+.|++.+.
T Consensus 564 ~~~~l~~~~~~~--l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~ 613 (631)
T PRK07769 564 DPQPIADDIRAA--IAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYL 613 (631)
T ss_pred cHHHHHHHHHHH--HHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHH
Confidence 567899999999 995 67 588899987 69999999999999998654
No 95
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=98.14 E-value=2.2e-06 Score=57.77 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=37.4
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVL 45 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l 45 (75)
+..++.+++++. ++.|++|..+.+++++|+|++||++|+.|
T Consensus 396 ~~~~l~~~l~~~--l~~~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 396 SQAKLIAYLTEK--LAKYKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred CHHHHHHHHHHh--hhCCCCCeEEEEecCCCCCCCCceecccC
Confidence 467889999999 99999999999999999999999998754
No 96
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=98.13 E-value=3.4e-06 Score=58.59 Aligned_cols=42 Identities=33% Similarity=0.578 Sum_probs=38.0
Q ss_pred CHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77 3 MIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS 46 (75)
Q Consensus 3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~ 46 (75)
+..++.+++++ + ++.|+.|..+.+++++|+|++||++|+.|+
T Consensus 485 ~~~~l~~~l~~~~--l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 485 KAAQLRRFLRERG--LAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred CHHHHHHHHHhCC--CccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 56789999987 6 999999999999999999999999998763
No 97
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=98.12 E-value=3.1e-06 Score=58.93 Aligned_cols=42 Identities=33% Similarity=0.438 Sum_probs=38.5
Q ss_pred CHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77 3 MIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS 46 (75)
Q Consensus 3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~ 46 (75)
+.+++.++++. + ++.|++|..+.+++++|+|++||++|+.|+
T Consensus 495 ~~~~l~~~~~~~~--l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 495 DFAAMVAFLKAQK--VALQYIPERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred CHHHHHHHHHhcc--hhhccCCcEEEEeccCCCCCccccchHhhc
Confidence 56789999985 7 999999999999999999999999999875
No 98
>PRK08162 acyl-CoA synthetase; Validated
Probab=98.08 E-value=1e-05 Score=56.29 Aligned_cols=48 Identities=33% Similarity=0.544 Sum_probs=41.8
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~ 53 (75)
+.+++.++++.. +++|++|+.+.+ .++|+|++||++|+.|++++....
T Consensus 494 ~~~~l~~~~~~~--l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~l~ 541 (545)
T PRK08162 494 TEEEIIAHCREH--LAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKSLK 541 (545)
T ss_pred CHHHHHHHHHHh--cccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhhhh
Confidence 567899999999 999999999875 689999999999999998765543
No 99
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=98.04 E-value=4.8e-06 Score=59.13 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=39.2
Q ss_pred CHHHHHHHHhhCCCCC-CCCC-ccEEEEec--cCCCCCCCcchHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIA-HYKI-PRYVEFVA--DFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~-~~~~-P~~i~~v~--~lP~t~~gKi~r~~l~~~~~ 50 (75)
+.+++.+++++. +. .|++ |+.+.+++ +||+|++||++|+.|++.+.
T Consensus 556 ~~~~l~~~~~~~--l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~ 605 (612)
T PRK12476 556 DPAPAIDAIRAA--VSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYL 605 (612)
T ss_pred cHHHHHHHHHHH--HHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHH
Confidence 457888999998 88 5887 68888887 59999999999999998754
No 100
>PRK13383 acyl-CoA synthetase; Provisional
Probab=98.03 E-value=8.7e-06 Score=56.44 Aligned_cols=42 Identities=19% Similarity=0.451 Sum_probs=38.7
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS 46 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~ 46 (75)
+.+++..+++++ ++.|+.|..+.+++++|+|++||++|+.|+
T Consensus 474 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 474 DAAQLRDYLKDR--VSRFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred CHHHHHHHHHHh--cccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 457899999999 999999999999999999999999998874
No 101
>PLN02479 acetate-CoA ligase
Probab=97.97 E-value=1.6e-05 Score=55.89 Aligned_cols=44 Identities=32% Similarity=0.533 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
.+++.++++.+ +++|+.|+.+.+ +++|+|++||++|+.|++.+.
T Consensus 514 ~~~l~~~~~~~--l~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~ 557 (567)
T PLN02479 514 AEDIMKFCRER--LPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAK 557 (567)
T ss_pred HHHHHHHHHhh--cccccCCceEEe-ccCCCCCccCeeHHHHHHHHH
Confidence 46789999999 999999999877 679999999999999987643
No 102
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=97.95 E-value=7.5e-06 Score=56.52 Aligned_cols=42 Identities=45% Similarity=0.764 Sum_probs=38.7
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~ 47 (75)
.+++.++++.+ +++|+.|..+.+++++|+|++||++|+.+++
T Consensus 466 ~~~i~~~~~~~--l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~ 507 (508)
T TIGR02262 466 ETELKEHVKDR--LAPYKYPRWIVFVDDLPKTATGKIQRFKLRE 507 (508)
T ss_pred HHHHHHHHHHh--cccCCCCceEEEecCCCCCCCCcEehhhccC
Confidence 56789999999 9999999999999999999999999988764
No 103
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=97.91 E-value=1.7e-05 Score=54.40 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=33.4
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcch
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQ 41 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~ 41 (75)
.+++.++++++ ++.|+.|+.+.+++++|+|++||++
T Consensus 351 ~~~l~~~~~~~--L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 351 EIELRATAARH--LPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HHHHHHHHHHh--CCCCCCCcEEEEcccCCCCCCCCcC
Confidence 35889999999 9999999999999999999999974
No 104
>PRK09274 peptide synthase; Provisional
Probab=97.85 E-value=2e-05 Score=55.00 Aligned_cols=46 Identities=13% Similarity=-0.009 Sum_probs=36.2
Q ss_pred HHHHHHHHhhCCCCCCC---CCccEEEEeccCCCC--CCCcchHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHY---KIPRYVEFVADFPKT--VSGKIQKYVLSKQMED 51 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~---~~P~~i~~v~~lP~t--~~gKi~r~~l~~~~~~ 51 (75)
.+++.++++.. +..+ +.|+.+.++++||+| ++||++|+.|++.+..
T Consensus 498 ~~~l~~~l~~~--l~~~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~ 548 (552)
T PRK09274 498 KSALYQELRAL--AAAHPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAAK 548 (552)
T ss_pred hHHHhhhhHHH--HHhcCCCcceeEEeccCCCCccccccccccHHHHHHHHHH
Confidence 44566677666 5554 577889999999999 7999999999987654
No 105
>KOG1178|consensus
Probab=97.62 E-value=4.8e-05 Score=57.87 Aligned_cols=42 Identities=26% Similarity=0.402 Sum_probs=39.1
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~ 48 (75)
..|+.|+..+ ++.|++|..++.++.+|.|++||+|++.+...
T Consensus 535 ~~i~~~l~~~--La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~~ 576 (1032)
T KOG1178|consen 535 RDIRNYLKKE--LASYMLPSLVVPLAKVPLNPNGKVDKKALLEY 576 (1032)
T ss_pred HHHHHhhccc--ccceecceEEEEhhhCCcCCCCCcChhhhhhh
Confidence 5689999999 99999999999999999999999999999773
No 106
>PRK09192 acyl-CoA synthetase; Validated
Probab=97.49 E-value=0.00012 Score=51.68 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=39.3
Q ss_pred CHHHHHHHHhhCCCCC-CCCCccEEEEec--cCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIA-HYKIPRYVEFVA--DFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~-~~~~P~~i~~v~--~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.+++++. +. .|+.|..+.++. ++|+|++||++|+.+++.+..
T Consensus 517 ~~~~l~~~~~~~--l~~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~ 566 (579)
T PRK09192 517 RRGQLIHALAAL--VRSEFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLS 566 (579)
T ss_pred HHHHHHHHHHHH--HHHHhCCCceEEEeCCCCcCCCCCcchhHHHHHHHHHc
Confidence 346788999988 74 688999888885 899999999999999887654
No 107
>PLN02736 long-chain acyl-CoA synthetase
Probab=97.32 E-value=0.00068 Score=48.72 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=33.9
Q ss_pred CCCCCCccEEEEeccCC------CCCCCcchHHHHHHHHHHHHH
Q psy77 17 IAHYKIPRYVEFVADFP------KTVSGKIQKYVLSKQMEDKMI 54 (75)
Q Consensus 17 l~~~~~P~~i~~v~~lP------~t~~gKi~r~~l~~~~~~~~~ 54 (75)
|+.|++|+.+.++++.+ +|++||+.|+.+++.+...++
T Consensus 601 l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~ 644 (651)
T PLN02736 601 LRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAIS 644 (651)
T ss_pred CCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHH
Confidence 99999999999999876 699999999999998766554
No 108
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.00 E-value=0.00062 Score=47.52 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=33.3
Q ss_pred HHHHHHhhCCCCCCC--CCccEEEEec--cCCCCCCCcchHHHHHHHH
Q psy77 6 HTDEVVKGSMVIAHY--KIPRYVEFVA--DFPKTVSGKIQKYVLSKQM 49 (75)
Q Consensus 6 ~l~~~~~~~~~l~~~--~~P~~i~~v~--~lP~t~~gKi~r~~l~~~~ 49 (75)
++.+++++. +..+ ..|..+.+++ ++|+|++||+.|+.+++.+
T Consensus 498 ~l~~~~~~~--l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~ 543 (545)
T PRK07768 498 RIRHQVAHE--VVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELV 543 (545)
T ss_pred HHHHHHHHH--HHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhc
Confidence 456666666 5443 5888888886 8999999999999999865
No 109
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=96.76 E-value=0.0013 Score=46.93 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=37.8
Q ss_pred CHHHHHHHHhhCCCCCCCC--------CccEEEEeccCCCCCCCcch------HHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYK--------IPRYVEFVADFPKTVSGKIQ------KYVLSKQMEDKMI 54 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~--------~P~~i~~v~~lP~t~~gKi~------r~~l~~~~~~~~~ 54 (75)
+.+++.+++++. |+.|+ +|+++.+++++|++++||+. |..+.+.+...++
T Consensus 536 ~~~~l~~~~~~~--l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~ 599 (614)
T PRK08180 536 AHPAVRAAFRER--LARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVE 599 (614)
T ss_pred cCHHHHHHHHHH--HHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHH
Confidence 346789999998 88888 89999999999999877654 5555555554443
No 110
>PRK05850 acyl-CoA synthetase; Validated
Probab=96.51 E-value=0.0027 Score=44.74 Aligned_cols=44 Identities=25% Similarity=0.276 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCCCCC--CCccEEEEec--cCCCCCCCcchHHHHHHHHHH
Q psy77 6 HTDEVVKGSMVIAHY--KIPRYVEFVA--DFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 6 ~l~~~~~~~~~l~~~--~~P~~i~~v~--~lP~t~~gKi~r~~l~~~~~~ 51 (75)
++.+.+... +..+ ..|..+.+++ .+|+|++||++|+.+++.+..
T Consensus 521 ~l~~~v~~~--l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~ 568 (578)
T PRK05850 521 TVKREVTSA--ISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQ 568 (578)
T ss_pred HHHHHHHHH--HHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHc
Confidence 445555444 4332 2566677775 799999999999999987643
No 111
>PRK12582 acyl-CoA synthetase; Provisional
Probab=95.32 E-value=0.017 Score=41.41 Aligned_cols=49 Identities=6% Similarity=0.067 Sum_probs=34.3
Q ss_pred HHHHHHHHhhCCCCCCCC--------CccEEEEeccCCCCCCCc------chHHHHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYK--------IPRYVEFVADFPKTVSGK------IQKYVLSKQMEDKMI 54 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~--------~P~~i~~v~~lP~t~~gK------i~r~~l~~~~~~~~~ 54 (75)
.+++.++++.. ++.++ +|+++.++++.|++.+|| +.|+.+.+.+...++
T Consensus 548 ~~~l~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~ 610 (624)
T PRK12582 548 HPAVLAILREG--LSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVE 610 (624)
T ss_pred CHHHHHHHHHH--HHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHH
Confidence 35677887777 77766 999999999988766555 445555555555443
No 112
>KOG1179|consensus
Probab=95.01 E-value=0.0075 Score=43.98 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=40.7
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~ 49 (75)
+.+.+-.+++.. |++|.+|..+.+.+++++|.+-|..|.+|.++.
T Consensus 567 d~~~l~~~l~~~--LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~eg 611 (649)
T KOG1179|consen 567 DLEKLYQHLREN--LPSYARPRFLRLQDEIEKTGTFKLQKTELQKEG 611 (649)
T ss_pred hHHHHHHHHHhh--CccccchHHHHHHhhhhcccchhhHHHHHHHcc
Confidence 456788899999 999999999999999999999999999998753
No 113
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=91.09 E-value=0.81 Score=33.63 Aligned_cols=40 Identities=15% Similarity=0.341 Sum_probs=32.7
Q ss_pred hCCCCCCCCCccEEEEeccCC------CCCCCcchHHHHHHHHHHHHH
Q psy77 13 GSMVIAHYKIPRYVEFVADFP------KTVSGKIQKYVLSKQMEDKMI 54 (75)
Q Consensus 13 ~~~~l~~~~~P~~i~~v~~lP------~t~~gKi~r~~l~~~~~~~~~ 54 (75)
.+ |..|++|+.|.++++-. .|++.|+.|..+.+.+...+.
T Consensus 647 ~~--l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~ 692 (696)
T PLN02387 647 AR--LEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLK 692 (696)
T ss_pred cC--CCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHHHHH
Confidence 46 99999999999887532 678889999999998877654
No 114
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=90.58 E-value=0.69 Score=33.71 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=33.8
Q ss_pred CCCCCCccEEEEec-cC-----CCCCCCcchHHHHHHHHHHHHHHHH
Q psy77 17 IAHYKIPRYVEFVA-DF-----PKTVSGKIQKYVLSKQMEDKMILII 57 (75)
Q Consensus 17 l~~~~~P~~i~~v~-~l-----P~t~~gKi~r~~l~~~~~~~~~~~~ 57 (75)
+..|..++.+.+.+ .+ .+|+++|+.|..+.+.+...+..-.
T Consensus 606 l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~lY 652 (660)
T PLN02861 606 LRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLY 652 (660)
T ss_pred CCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHHHH
Confidence 88999999988855 46 7999999999999998887665443
No 115
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=89.37 E-value=1.5 Score=32.04 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=32.8
Q ss_pred CCCCCCccEEEEecc-C-----CCCCCCcchHHHHHHHHHHHHHHH
Q psy77 17 IAHYKIPRYVEFVAD-F-----PKTVSGKIQKYVLSKQMEDKMILI 56 (75)
Q Consensus 17 l~~~~~P~~i~~v~~-l-----P~t~~gKi~r~~l~~~~~~~~~~~ 56 (75)
|+.|.+++.+.+.++ + ..|+++|+.|..+.+.+...++.-
T Consensus 606 l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~l 651 (660)
T PLN02430 606 LRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEM 651 (660)
T ss_pred CCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHHH
Confidence 999999999888653 2 489999999999998887766543
No 116
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=89.15 E-value=1.3 Score=32.46 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=31.0
Q ss_pred CCCCCCccEEEEecc------CCCCCCCcchHHHHHHHHHHHHH
Q psy77 17 IAHYKIPRYVEFVAD------FPKTVSGKIQKYVLSKQMEDKMI 54 (75)
Q Consensus 17 l~~~~~P~~i~~v~~------lP~t~~gKi~r~~l~~~~~~~~~ 54 (75)
+.+|..|+.+.++++ --.|+++|+.|+.+.+.+...++
T Consensus 651 l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~ 694 (700)
T PTZ00216 651 RKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIK 694 (700)
T ss_pred CCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHH
Confidence 889999999888743 23699999999999988876554
No 117
>PLN02614 long-chain acyl-CoA synthetase
Probab=87.99 E-value=1.5 Score=32.08 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=34.5
Q ss_pred hCCCCCCCCCccEEEEecc-C-----CCCCCCcchHHHHHHHHHHHHHHHH
Q psy77 13 GSMVIAHYKIPRYVEFVAD-F-----PKTVSGKIQKYVLSKQMEDKMILII 57 (75)
Q Consensus 13 ~~~~l~~~~~P~~i~~v~~-l-----P~t~~gKi~r~~l~~~~~~~~~~~~ 57 (75)
.. |+.|.+++.+.+.+. + -.|+++|+.|..+.+.+...++.-.
T Consensus 607 ~~--l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ly 655 (666)
T PLN02614 607 KK--MKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMY 655 (666)
T ss_pred cC--CCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHHHH
Confidence 45 999999999888763 3 3899999999999998877665443
No 118
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=78.10 E-value=1.9 Score=29.53 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=24.0
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEe--ccCCCCCCCcchH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFV--ADFPKTVSGKIQK 42 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v--~~lP~t~~gKi~r 42 (75)
.++|.+++++. ++.+. .+.++ ++||+|+ ||+.+
T Consensus 383 ~~~i~~~~~~~--~~~~~---~v~~~~~~~lp~~~-GK~~~ 417 (422)
T TIGR02155 383 AGEIQHTIKQE--VGVSM---DVHLVEPGSLPRSE-GKARR 417 (422)
T ss_pred HHHHHHHHHhc--cCcEE---EEEEECCCCccCCC-CCceE
Confidence 35678888888 77663 35554 6999988 99864
No 119
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=58.02 E-value=40 Score=20.75 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=34.2
Q ss_pred CCHHHHHHHHhhCCCCCC-C-CCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAH-Y-KIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~-~-~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
++++++...-..-.++.+ - .+|.+.+--++.-++++|..+|..|-....
T Consensus 24 LS~EEL~~L~~el~e~DPd~~~lP~g~Rq~dQT~K~pTG~fdRe~Ll~~le 74 (147)
T PF03250_consen 24 LSPEELEELENELEEMDPDNSLLPAGMRQRDQTEKPPTGPFDREALLDYLE 74 (147)
T ss_pred CCHHHHHHHHHHHHhhCCCcccCChhhhcccccCCCCCCCcCHHHHHHHHH
Confidence 566777666532100332 3 388888888999999999999999877654
No 120
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=52.10 E-value=67 Score=24.38 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=30.2
Q ss_pred CCCCCCccEEEEecc-C----CCCCCCcchHHHHHHHHHHHHH
Q psy77 17 IAHYKIPRYVEFVAD-F----PKTVSGKIQKYVLSKQMEDKMI 54 (75)
Q Consensus 17 l~~~~~P~~i~~v~~-l----P~t~~gKi~r~~l~~~~~~~~~ 54 (75)
|.+|..++.+.++++ + -.||+.|+.|..+.+.+...++
T Consensus 695 l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~i~ 737 (746)
T PTZ00342 695 LNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFFID 737 (746)
T ss_pred CccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHHHH
Confidence 999999999888642 2 3899999999999987775544
No 121
>KOG1180|consensus
Probab=50.90 E-value=49 Score=25.02 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=32.8
Q ss_pred HHHHHH-hhCCCCCCCCCccEEEEeccCCCCC-------CCcchHHHHHHHHHHHHHH
Q psy77 6 HTDEVV-KGSMVIAHYKIPRYVEFVADFPKTV-------SGKIQKYVLSKQMEDKMIL 55 (75)
Q Consensus 6 ~l~~~~-~~~~~l~~~~~P~~i~~v~~lP~t~-------~gKi~r~~l~~~~~~~~~~ 55 (75)
++.+.- +.+ |.++.+|..|++.++ |.|| .-|+.|+.++..+...++.
T Consensus 619 ~L~~~ak~~~--L~~iEip~~I~l~~e-~WTPenGlvT~A~KLKRk~I~~~~k~ei~~ 673 (678)
T KOG1180|consen 619 ELIEAAKSQK--LERIEIPAKIVLSPE-PWTPENGLVTAALKLKRKEILAAYKKEIDR 673 (678)
T ss_pred HHHHHHHhcc--cccccccceeEecCC-CcCCCccccHHHHHhhHHHHHHHHHHHHHH
Confidence 444444 345 999999999988764 5555 4577788888777766654
No 122
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=40.53 E-value=74 Score=20.74 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=18.6
Q ss_pred CCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q psy77 37 SGKIQKYVLSKQMEDKMI-LIIAVIHCQVQAYLSGLL 72 (75)
Q Consensus 37 ~gKi~r~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 72 (75)
++.|+-..++..+...++ ..+..+|..+..|+++=|
T Consensus 6 ~~Ridl~~lk~~l~~~LG~~~~~~Y~~~l~~fl~~kl 42 (252)
T PF12767_consen 6 NSRIDLEELKSQLQKRLGPDRWKKYFQSLKRFLSGKL 42 (252)
T ss_pred ccccCHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcc
Confidence 444555555555555554 445555555555554433
No 123
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=34.67 E-value=46 Score=14.30 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=14.6
Q ss_pred CCCCCCCcchHHHHHHHHH
Q psy77 32 FPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 32 lP~t~~gKi~r~~l~~~~~ 50 (75)
+=++.+|+|+..++...+.
T Consensus 9 ~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 9 FDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HSTTSSSEEEHHHHHHHHH
T ss_pred HCCCCCCcCCHHHHHHHHH
Confidence 4467899999998887653
No 124
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=31.46 E-value=30 Score=21.45 Aligned_cols=16 Identities=50% Similarity=0.634 Sum_probs=13.7
Q ss_pred EEEeccCCCCCCCcch
Q psy77 26 VEFVADFPKTVSGKIQ 41 (75)
Q Consensus 26 i~~v~~lP~t~~gKi~ 41 (75)
...|+.+|.|..|||.
T Consensus 43 ~IlV~~~P~Td~gKI~ 58 (157)
T PF06092_consen 43 DILVKNFPLTDSGKIN 58 (157)
T ss_pred eeeeecCCCCccchhh
Confidence 3567899999999996
No 125
>PF02512 UK: Virulence determinant
Probab=26.38 E-value=40 Score=18.76 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=8.2
Q ss_pred HHHHHHHHhhh
Q psy77 62 CQVQAYLSGLL 72 (75)
Q Consensus 62 ~~~~~~~~~~~ 72 (75)
.-|++||.|+-
T Consensus 50 ewiaeywkgi~ 60 (96)
T PF02512_consen 50 EWIAEYWKGIK 60 (96)
T ss_pred HHHHHHHHhcc
Confidence 35789999863
No 126
>COG3918 Predicted membrane protein [Function unknown]
Probab=25.48 E-value=42 Score=20.22 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=12.4
Q ss_pred eccCCCCCCCcchHH
Q psy77 29 VADFPKTVSGKIQKY 43 (75)
Q Consensus 29 v~~lP~t~~gKi~r~ 43 (75)
.|++|.||+.|+...
T Consensus 62 tDqlPsTPsRkVp~q 76 (153)
T COG3918 62 TDQLPSTPSRKVPPQ 76 (153)
T ss_pred hccCCCCCCCcCChh
Confidence 478999999998654
No 127
>PF12326 EOS1: N-glycosylation protein; InterPro: IPR021100 This entry represents a family, containing several predicted transmembrane helices, which includes the fungal N-glycosylation protein EOS1. EOS1 is not essential for cell growth, but is necessary for tolerance to oxidative stress, and appears to be involved the N-glycosylation of cellular proteins [].
Probab=25.14 E-value=1.1e+02 Score=18.77 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy77 53 MILIIAVIHCQVQAYLSG 70 (75)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~ 70 (75)
.+-..+.+||.+.+||+=
T Consensus 5 ~E~~la~lWc~~s~Yls~ 22 (148)
T PF12326_consen 5 SEYFLASLWCIVSAYLSY 22 (148)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345678999999999974
No 128
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=24.14 E-value=1.4e+02 Score=20.27 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=17.7
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEE
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEF 28 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~ 28 (75)
.++.+.++++ ++.|.+|+.+.-
T Consensus 290 ~~i~~~l~~~--~sG~~~P~~v~d 311 (321)
T TIGR03821 290 RALMAELLAR--LPGYLVPRLVRE 311 (321)
T ss_pred HHHHHHHHHh--CCCCccceeEEE
Confidence 4577778889 999999997653
No 129
>KOG0257|consensus
Probab=23.41 E-value=1.8e+02 Score=21.00 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=15.0
Q ss_pred ccEEEEeccCCCCCCCcchHHH-HHHH
Q psy77 23 PRYVEFVADFPKTVSGKIQKYV-LSKQ 48 (75)
Q Consensus 23 P~~i~~v~~lP~t~~gKi~r~~-l~~~ 48 (75)
++.+.+ .-|.||+||+.-++ |...
T Consensus 173 Tk~Ii~--ntPhNPtGkvfsReeLe~i 197 (420)
T KOG0257|consen 173 TKAIIL--NTPHNPTGKVFSREELERI 197 (420)
T ss_pred ccEEEE--eCCCCCcCcccCHHHHHHH
Confidence 344443 34999999987554 4443
No 130
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=22.02 E-value=84 Score=13.19 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=13.8
Q ss_pred CCCCCCcchHHHHHHHHH
Q psy77 33 PKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 33 P~t~~gKi~r~~l~~~~~ 50 (75)
=.+.+|+|+..+++..+.
T Consensus 10 D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 10 DKDGDGFIDFEELRAILR 27 (31)
T ss_dssp -TTSSSEEEHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHH
Confidence 357889999999887664
No 131
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=21.93 E-value=1.3e+02 Score=21.61 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.8
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEe
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFV 29 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v 29 (75)
-+|.+.++++ ++.|.+|+.+.-.
T Consensus 302 ~~I~~~lr~~--~sG~~vP~~v~d~ 324 (417)
T TIGR03820 302 IEIIESLIGH--TSGFAVPTYVVDA 324 (417)
T ss_pred HHHHHHHHHh--CCCCCceEEEEec
Confidence 4678889999 9999999986643
No 132
>PTZ00297 pantothenate kinase; Provisional
Probab=20.93 E-value=3.4e+02 Score=22.86 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=29.9
Q ss_pred CCCCCCccEEEEec-cC-----CCCCCCcchHHHHHHHHHHHHHH
Q psy77 17 IAHYKIPRYVEFVA-DF-----PKTVSGKIQKYVLSKQMEDKMIL 55 (75)
Q Consensus 17 l~~~~~P~~i~~v~-~l-----P~t~~gKi~r~~l~~~~~~~~~~ 55 (75)
+..+++++.+.+++ ++ -.|++.|+.|..+.+.+.+.++.
T Consensus 955 l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~ 999 (1452)
T PTZ00297 955 LHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIER 999 (1452)
T ss_pred cCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHH
Confidence 56678888777653 34 47999999999999988776654
No 133
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=20.37 E-value=88 Score=12.79 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=12.1
Q ss_pred CCCCCCCcchHHHHHH
Q psy77 32 FPKTVSGKIQKYVLSK 47 (75)
Q Consensus 32 lP~t~~gKi~r~~l~~ 47 (75)
+=.+..|+|...++..
T Consensus 8 ~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 8 FDTDGDGKISFEEFQR 23 (25)
T ss_dssp HTTTSSSEEEHHHHHH
T ss_pred HcCCCCCcCCHHHHHH
Confidence 3467889998888775
Done!