Query psy77
Match_columns 75
No_of_seqs 190 out of 1623
Neff 8.2
Searched_HMMs 29240
Date Sat Aug 17 01:11:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy77.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/77hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1amu_A GRSA, gramicidin synthe 99.2 3.9E-12 1.3E-16 88.2 1.3 72 2-75 482-558 (563)
2 4gs5_A Acyl-COA synthetase (AM 99.0 1.1E-10 3.8E-15 77.2 3.1 46 4-51 309-354 (358)
3 3r44_A Fatty acyl COA syntheta 98.9 8.6E-10 2.9E-14 75.5 4.7 49 2-52 466-514 (517)
4 3rg2_A Enterobactin synthase c 98.9 1.3E-09 4.4E-14 76.1 5.6 70 2-73 486-559 (617)
5 1t5h_X 4-chlorobenzoyl COA lig 98.9 2E-09 6.7E-14 73.4 5.7 46 2-49 456-502 (504)
6 4fuq_A Malonyl COA synthetase; 98.9 1.4E-09 4.9E-14 74.2 4.3 48 2-51 453-500 (503)
7 3ni2_A 4-coumarate:COA ligase; 98.9 1.6E-09 5.5E-14 74.4 4.1 47 2-50 488-534 (536)
8 3ipl_A 2-succinylbenzoate--COA 98.9 1.1E-09 3.6E-14 74.5 3.2 48 2-51 450-497 (501)
9 1mdb_A 2,3-dihydroxybenzoate-A 98.8 7E-09 2.4E-13 71.4 6.2 51 2-53 483-533 (539)
10 3g7s_A Long-chain-fatty-acid-- 98.8 1.1E-09 3.8E-14 75.4 2.2 50 2-53 495-544 (549)
11 3nyq_A Malonyl-COA ligase; A/B 98.8 2.1E-09 7.1E-14 73.5 3.4 43 3-47 462-504 (505)
12 3e7w_A D-alanine--poly(phospho 98.8 5.5E-09 1.9E-13 71.3 5.4 47 4-52 458-504 (511)
13 3l8c_A D-alanine--poly(phospho 98.8 2.7E-09 9.3E-14 72.8 3.5 46 4-51 467-512 (521)
14 3fce_A D-alanine--poly(phospho 98.8 7.1E-09 2.4E-13 70.7 5.3 47 5-53 460-506 (512)
15 2d1s_A Luciferase, luciferin 4 98.8 5.3E-09 1.8E-13 72.1 4.6 49 2-52 495-544 (548)
16 2vsq_A Surfactin synthetase su 98.8 5.4E-10 1.8E-14 83.6 -0.6 71 2-74 913-987 (1304)
17 4dg8_A PA1221; ANL superfamily 98.8 2.4E-09 8.3E-14 75.2 2.7 67 6-74 470-539 (620)
18 3c5e_A Acyl-coenzyme A synthet 98.8 5.7E-09 1.9E-13 72.4 4.4 47 4-52 517-563 (570)
19 3etc_A AMP-binding protein; ad 98.7 3.7E-09 1.3E-13 73.6 2.8 45 4-50 534-578 (580)
20 3ivr_A Putative long-chain-fat 98.7 1.1E-09 3.8E-14 74.6 0.0 49 3-53 455-503 (509)
21 1pg4_A Acetyl-COA synthetase; 98.7 1.3E-08 4.6E-13 71.6 5.0 47 4-52 576-622 (652)
22 2v7b_A Benzoate-coenzyme A lig 98.7 1.8E-08 6.1E-13 68.9 4.9 42 4-47 487-528 (529)
23 1ry2_A Acetyl-coenzyme A synth 98.6 4.1E-08 1.4E-12 69.4 5.1 47 4-52 592-638 (663)
24 3ite_A SIDN siderophore synthe 98.6 5.5E-09 1.9E-13 71.9 0.0 46 5-52 498-544 (562)
25 4gr5_A Non-ribosomal peptide s 98.6 6.2E-09 2.1E-13 72.0 0.0 44 3-48 525-568 (570)
26 3o83_A Peptide arylation enzym 98.6 7.3E-09 2.5E-13 71.3 0.0 47 3-51 493-540 (544)
27 1v25_A Long-chain-fatty-acid-C 98.5 3.6E-09 1.2E-13 72.8 -1.8 47 3-51 489-536 (541)
28 3tsy_A Fusion protein 4-coumar 98.5 9.6E-09 3.3E-13 74.9 0.2 52 3-56 536-587 (979)
29 3rix_A Luciferase, luciferin 4 98.4 2.7E-08 9.4E-13 68.5 0.0 50 3-54 494-544 (550)
30 3gqw_A Fatty acid AMP ligase; 98.2 7.9E-07 2.7E-11 60.9 2.5 49 5-55 516-567 (576)
31 3kxw_A Saframycin MX1 syntheta 98.1 1.3E-06 4.3E-11 60.3 2.1 47 3-51 517-567 (590)
32 2y4o_A Phenylacetate-coenzyme 97.4 4.4E-05 1.5E-09 51.1 0.9 38 4-43 396-436 (443)
33 3gxs_A Phenylacetate-coenzyme 96.9 0.00017 5.8E-09 40.3 0.4 35 5-42 64-101 (109)
34 2y27_A Phenylacetate-coenzyme 96.9 0.0002 6.8E-09 47.8 0.4 37 4-43 392-431 (437)
35 3qov_A Phenylacetate-coenzyme 96.8 0.00018 6.3E-09 48.0 0.1 37 4-43 390-429 (436)
36 3lax_A Phenylacetate-coenzyme 95.9 0.0023 7.9E-08 35.4 0.9 34 6-42 65-101 (109)
37 4f6l_B AUSA reductase domain p 81.6 0.29 9.8E-06 33.3 0.0 19 56-74 42-60 (508)
38 2b3g_B Cellular tumor antigen 39.7 19 0.00064 15.0 1.5 14 1-14 12-25 (28)
39 2wx4_A DCP1, decapping protein 27.3 34 0.0012 16.2 1.5 34 38-71 7-40 (46)
40 2cq8_A 10-formyltetrahydrofola 24.7 54 0.0019 18.1 2.3 16 58-73 24-39 (110)
41 4i4d_A Peptide synthetase NRPS 21.6 92 0.0032 15.8 3.2 20 55-74 12-31 (93)
No 1
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.18 E-value=3.9e-12 Score=88.21 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=42.6
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhcCC
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED-----KMILIIAVIHCQVQAYLSGLLDSE 75 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (75)
++.++++++++++ |+.|++|+.+.+++++|+|++||++|+.|++.... ....+.+..+..+.++|+.+|+++
T Consensus 482 ~~~~~l~~~l~~~--L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~~p~~~~e~~l~~iw~~~L~~~ 558 (563)
T 1amu_A 482 IPLEQLRQFSSEE--LPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLTFGMRVDYEAPRNEIEETLVTIWQDVLGSH 558 (563)
T ss_dssp CCHHHHHHHHHHH--SCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCCCC----------------------------
T ss_pred CCHHHHHHHHHhh--CchhhCCcEEEEecccCCCCCcChhHHhcCCcccccccccccCCCCCHHHHHHHHHHHHHhhhh
Confidence 3578999999999 99999999999999999999999999999764321 123456778999999999999875
No 2
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.03 E-value=1.1e-10 Score=77.21 Aligned_cols=46 Identities=22% Similarity=0.427 Sum_probs=42.0
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
.++++++|+++ |++|++|+.+.+++++|+|++||++|+.|++.+.+
T Consensus 309 ~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 309 TERLTAEIRSR--VSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp HHHHHHHHHHH--SCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC-
T ss_pred HHHHHHHHHhh--CCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhh
Confidence 46899999999 99999999999999999999999999999987644
No 3
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=98.93 E-value=8.6e-10 Score=75.55 Aligned_cols=49 Identities=33% Similarity=0.473 Sum_probs=45.0
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
.+.++++++++++ |+.|++|+.+.+++++|+|++||++|+.|++.+...
T Consensus 466 ~~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 466 VSEQQIVEYCGTR--LARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp CCHHHHHHHHHHH--SCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHh--CCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhh
Confidence 4678999999999 999999999999999999999999999999887543
No 4
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=98.93 E-value=1.3e-09 Score=76.10 Aligned_cols=70 Identities=26% Similarity=0.378 Sum_probs=56.6
Q ss_pred CCHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhc
Q psy77 2 LMIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILI---IAVIHCQVQAYLSGLLD 73 (75)
Q Consensus 2 l~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 73 (75)
.+.+++++++++ . ++.|++|..+.+++++|+|++||++|+.|++......... ....+..+.++|..+|+
T Consensus 486 ~~~~~l~~~l~~~~--lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 559 (617)
T 3rg2_A 486 LRAVQVRRFLREQG--IAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASAGRASIPASKAALREVILPLLD 559 (617)
T ss_dssp CCHHHHHHHHHTTT--CCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHHHHSSSCCCCSHHHHHHHHGGGSC
T ss_pred CCHHHHHHHHHhCC--CccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcccccccccccccHHHHHHHHHHHhc
Confidence 356789999998 7 9999999999999999999999999999998776543221 12345678888888875
No 5
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=98.91 E-value=2e-09 Score=73.39 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=42.5
Q ss_pred CCHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHH
Q psy77 2 LMIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49 (75)
Q Consensus 2 l~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~ 49 (75)
++.+++.++|+. + |++|++|+.+.+++++|+|++||++|+.|++.+
T Consensus 456 ~~~~~l~~~~~~~~--L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 502 (504)
T 1t5h_X 456 LSADALDTFCRSSE--LADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (504)
T ss_dssp CCHHHHHHHHHTSS--CCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred cCHHHHHHHHhhcc--CcccccceEEEEhhhCCCCCCCCEeHHHHHHHh
Confidence 357899999998 9 999999999999999999999999999998764
No 6
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=98.88 E-value=1.4e-09 Score=74.21 Aligned_cols=48 Identities=33% Similarity=0.580 Sum_probs=43.9
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
.+.+++.++++++ |++|++|+.+.+++++|+|++||++|+.|++.+.+
T Consensus 453 ~~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 453 IDEAQVLHGLDGQ--LAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp CCHHHHHHHHBTT--BCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTT
T ss_pred CCHHHHHHHHHhh--cccCCCCCEEEEECCCCCCcccceeHHHHHHHHHH
Confidence 4578899999999 99999999999999999999999999999987643
No 7
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=98.86 E-value=1.6e-09 Score=74.40 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=42.4
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
.+.++++++++++ |+.|++|+.+.+++++|+|++||++|+.|++.+.
T Consensus 488 ~~~~~l~~~l~~~--l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 488 ATEDEIKQYISKQ--VIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp CCHHHHHHHHHTT--SCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC--
T ss_pred CCHHHHHHHHHHh--ccCCccccEEEEEecCCCCCCCCeeHHHHHHHhc
Confidence 4578999999999 9999999999999999999999999999987653
No 8
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=98.86 E-value=1.1e-09 Score=74.50 Aligned_cols=48 Identities=25% Similarity=0.386 Sum_probs=28.3
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
.+.+++.++++++ |+.|++|+.+.+++++|+|++||++|+.|++....
T Consensus 450 ~~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 450 ISKAQLIAYLSKH--LAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp CCHHHHHHHHHHH--SCGGGSCSEEEECSSCC------------------
T ss_pred CCHHHHHHHHHhh--CccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 4678999999999 99999999999999999999999999999987654
No 9
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=98.83 E-value=7e-09 Score=71.35 Aligned_cols=51 Identities=33% Similarity=0.541 Sum_probs=45.0
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~ 53 (75)
.+.+++++++++++ |+.|++|+.+.+++++|+|++||++|+.|++.+...+
T Consensus 483 ~~~~~l~~~l~~~~-L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 533 (539)
T 1mdb_A 483 PKAAELKAFLRERG-LAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533 (539)
T ss_dssp CCHHHHHHHHHHTT-CCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCC-CCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence 35688999999843 9999999999999999999999999999998876554
No 10
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=98.82 E-value=1.1e-09 Score=75.38 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=23.2
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~ 53 (75)
.+.++++++++++ |+.|++|+.+.++++||+|++||++|+.|++......
T Consensus 495 ~~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 544 (549)
T 3g7s_A 495 VDEEDIIEWVRER--ISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGH 544 (549)
T ss_dssp CCHHHHHHHHHTT--CC-----CCCCEEEECC--------------------
T ss_pred CCHHHHHHHHHHh--ccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccc
Confidence 4678999999999 9999999999999999999999999999998776543
No 11
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=98.82 E-value=2.1e-09 Score=73.54 Aligned_cols=43 Identities=28% Similarity=0.433 Sum_probs=28.6
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~ 47 (75)
+.++++++++++ |+.|++|+.+.+++++|+|++||++|+.|++
T Consensus 462 ~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 462 ALGTLADHVAAR--LAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp CHHHHHHHHHHH--TCGGGSCSEEEECSCCCC-------------
T ss_pred CHHHHHHHHHhh--CCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 568999999999 9999999999999999999999999999975
No 12
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=98.81 E-value=5.5e-09 Score=71.32 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=43.3
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
.++++++++++ |+.|++|+.+.+++++|+|++||++|+.|++.....
T Consensus 458 ~~~l~~~l~~~--L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 458 TSAIKKELAAS--LPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp HHHHHHHHHHH--SCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--CchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhh
Confidence 36799999999 999999999999999999999999999999987654
No 13
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=98.80 E-value=2.7e-09 Score=72.79 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=42.2
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
.++++++|+++ |+.|++|+.+.+++++|+|++||++|+.|++....
T Consensus 467 ~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~ 512 (521)
T 3l8c_A 467 TKAIKASVKDH--MMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNN 512 (521)
T ss_dssp HHHHHHHSGGG--SCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-
T ss_pred HHHHHHHHHhh--CccccCCeEEEEecccCCCCCcCccHHHHhhhhhc
Confidence 46899999999 99999999999999999999999999999987654
No 14
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=98.79 E-value=7.1e-09 Score=70.67 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=42.4
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~ 53 (75)
++++++++++ |+.|++|+.+.+++++|+|++||++|+.|++.+....
T Consensus 460 ~~l~~~l~~~--L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~ 506 (512)
T 3fce_A 460 SAIKKELNER--LPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALE 506 (512)
T ss_dssp HHHHHHHHTT--SCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC--
T ss_pred HHHHHHHHhh--CchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcc
Confidence 5799999999 9999999999999999999999999999998876543
No 15
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=98.78 E-value=5.3e-09 Score=72.15 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=44.5
Q ss_pred CCHHHHHHHHhhCCCCCCCCCcc-EEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPR-YVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~-~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
.+.+++.++++++ |+.|+.|+ .+.+++++|+|++||++|+.|++.+...
T Consensus 495 ~~~~~l~~~~~~~--l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 544 (548)
T 2d1s_A 495 MTEKEVMDYVASQ--VSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKP 544 (548)
T ss_dssp CCHHHHHHHHHTT--SCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHh--ccccccccccEEEccCCCCCCcchhHHHHHHHHHhhh
Confidence 3578999999999 99999999 9999999999999999999999876543
No 16
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=98.78 E-value=5.4e-10 Score=83.57 Aligned_cols=71 Identities=23% Similarity=0.378 Sum_probs=57.8
Q ss_pred CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhcC
Q psy77 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM----ILIIAVIHCQVQAYLSGLLDS 74 (75)
Q Consensus 2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 74 (75)
.+.++++++++++ |+.|++|..+.+++++|+|++||++|+.|.+...... ....+..+..++.+|+.+|+.
T Consensus 913 ~~~~~l~~~l~~~--Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~~~~~~~~~~p~~~~e~~l~~~~~~vL~~ 987 (1304)
T 2vsq_A 913 LSAEDVKAHLKKQ--LPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNEMEETIAQIWSEVLGR 987 (1304)
T ss_dssp SCHHHHHHHHHHH--SCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCGGGGCCCCCCCSSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHh--ChHhhhccEEEEecccCCCCCcccCHhhcCCcchhhhcccccCCCChHHHHHHHHHHHHcCC
Confidence 3568999999999 9999999999999999999999999998865432211 123456788899999999864
No 17
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=98.78 E-value=2.4e-09 Score=75.21 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=35.0
Q ss_pred HHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcC
Q psy77 6 HTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM---ILIIAVIHCQVQAYLSGLLDS 74 (75)
Q Consensus 6 ~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 74 (75)
++.++++++ |+.|++|+.+.+++++|+|++||++|+.|++.+.... .......+..++++|+.+|+.
T Consensus 470 ~~~~~l~~~--Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~~~~~~~~~e~~l~~iw~~vL~~ 539 (620)
T 4dg8_A 470 ASPQALLRQ--LPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPLERCASALDPDQRGCAQLWSELLGC 539 (620)
T ss_dssp CCCHHHHHH--SCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSCC------------------------
T ss_pred HHHHHHHHh--ChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccccccccCCCCHHHHHHHHHHHHHhCC
Confidence 345678889 9999999999999999999999999999987654321 233456778899999999864
No 18
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=98.77 E-value=5.7e-09 Score=72.43 Aligned_cols=47 Identities=40% Similarity=0.568 Sum_probs=42.6
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
.++++++++.+ |+.|++|+.+.+++++|+|++||++|+.|++.....
T Consensus 517 ~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 517 TKELQQHVKSV--TAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp HHHHHHHHHHH--SCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC-
T ss_pred HHHHHHHHHhh--CccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhh
Confidence 46899999999 999999999999999999999999999999876543
No 19
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=98.74 E-value=3.7e-09 Score=73.56 Aligned_cols=45 Identities=38% Similarity=0.644 Sum_probs=24.5
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~ 50 (75)
.++|.++++++ +++|++|+.+.+++++|+|++||++|+.|++...
T Consensus 534 ~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~ 578 (580)
T 3etc_A 534 KNELQDHVKNV--TAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQ 578 (580)
T ss_dssp HHHHHHHHHHH--SCGGGCCSEEEEECC-------------------
T ss_pred HHHHHHHHHhh--CCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhh
Confidence 36899999999 9999999999999999999999999999998654
No 20
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=98.74 E-value=1.1e-09 Score=74.59 Aligned_cols=49 Identities=29% Similarity=0.413 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~ 53 (75)
+.++++++++++ |+.|++|+.+.++++||+|++||++|+.|++.+....
T Consensus 455 ~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~ 503 (509)
T 3ivr_A 455 AADALAEFVASL--IARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEG 503 (509)
T ss_dssp ---------------------------------------------------
T ss_pred CHHHHHHHHHhh--CcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcc
Confidence 457899999999 9999999999999999999999999999998876543
No 21
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=98.72 E-value=1.3e-08 Score=71.61 Aligned_cols=47 Identities=26% Similarity=0.388 Sum_probs=43.8
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
.++|+++++++ +++|++|+.+.+++++|+|++||++|+.|++.+...
T Consensus 576 ~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 576 YAEVRNWVRKE--IGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp HHHHHHHHHHH--TCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred HHHHHHHHHHh--CCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 46899999999 999999999999999999999999999999987754
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=98.69 E-value=1.8e-08 Score=68.94 Aligned_cols=42 Identities=40% Similarity=0.647 Sum_probs=39.3
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~ 47 (75)
.++++++++++ |+.|++|+.+.+++++|+|++||++|+.|++
T Consensus 487 ~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 487 AEELKAFVKDR--LAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp HHHHHHHHHTT--SCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred HHHHHHHHHhh--cchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 35799999999 9999999999999999999999999999975
No 23
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=98.62 E-value=4.1e-08 Score=69.37 Aligned_cols=47 Identities=32% Similarity=0.512 Sum_probs=42.1
Q ss_pred HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77 4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~ 52 (75)
.++|+++++++ +++|++|+.|.++++||+|++||++|+.|++.+...
T Consensus 592 ~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 592 KKHLVFTVRKD--IGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp HHHHHHHHHHH--TCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred HHHHHHHHHHh--CCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 46899999999 999999999999999999999999999999876543
No 24
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=98.59 E-value=5.5e-09 Score=71.93 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCCCCCccEEEEeccCCCC-CCCcchHHHHHHHHHHH
Q psy77 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKT-VSGKIQKYVLSKQMEDK 52 (75)
Q Consensus 5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t-~~gKi~r~~l~~~~~~~ 52 (75)
++|+++|+++ |++|++|+.+.++++||+| ++||++|+.|++.+...
T Consensus 498 ~~l~~~~~~~--L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 498 NSLRQACEQT--LPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTL 544 (562)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHhh--CCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhcc
Confidence 4899999999 9999999999999999998 99999999999887653
No 25
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=98.58 E-value=6.2e-09 Score=72.04 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~ 48 (75)
+.++++++|+++ |+.|++|+.+.+++++|+|++||++|+.|++.
T Consensus 525 ~~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 525 DAAELRRHVAEA--LPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ----------------------------------------------
T ss_pred CHHHHHHHHHhh--CccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 457899999999 99999999999999999999999999999864
No 26
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=98.56 E-value=7.3e-09 Score=71.32 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=0.0
Q ss_pred CHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++++++++ + |+.|++|+.+.+++++|+|++||++|+.|++.+..
T Consensus 493 ~~~~l~~~~~~~~--l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 493 KAVVLRRHLMELG--IAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp --------------------------------------------------
T ss_pred CHHHHHHHHHhCC--CCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 45678888888 7 99999999999999999999999999999987654
No 27
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=98.55 E-value=3.6e-09 Score=72.79 Aligned_cols=47 Identities=23% Similarity=0.428 Sum_probs=19.5
Q ss_pred CHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.++++. + |+.|++|+.+.+++++|+|++||++|+.|++.+..
T Consensus 489 ~~~~l~~~~~~~~--L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 489 TPEELNEHLLKAG--FAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp ------------C--CCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred CHHHHHHHHHhcc--CccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHH
Confidence 45688999999 8 99999999999999999999999999999986543
No 28
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=98.54 E-value=9.6e-09 Score=74.90 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILI 56 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~~~ 56 (75)
+.++++++++++ |+.|++|+.+.++++||+|++||++|+.|++.+.......
T Consensus 536 ~~~~l~~~l~~~--l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~ 587 (979)
T 3tsy_A 536 SEDDVKQFVSKQ--VVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLGSG 587 (979)
T ss_dssp ------------------------------------------------------
T ss_pred CHHHHHHHHHHh--cccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcCCc
Confidence 457899999999 9999999999999999999999999999999876654433
No 29
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=98.42 E-value=2.7e-08 Score=68.46 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhCCCCCCCCCcc-EEEEeccCCCCCCCcchHHHHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAHYKIPR-YVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~~~~P~-~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~ 54 (75)
+.+++.++++.+ +++|+.|. .+.+++++|+|++||++|+.|++.+.....
T Consensus 494 ~~~~l~~~~~~~--l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 544 (550)
T 3rix_A 494 TEKEIVDYVASQ--VTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKK 544 (550)
T ss_dssp -----------------------------------------------------
T ss_pred CHHHHHHHHHHh--cccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhcc
Confidence 457899999999 99987665 699999999999999999999998765443
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=98.16 E-value=7.9e-07 Score=60.94 Aligned_cols=49 Identities=14% Similarity=0.282 Sum_probs=42.5
Q ss_pred HHHHHHHhhCCCC-CCCCCccEEEEec--cCCCCCCCcchHHHHHHHHHHHHHH
Q psy77 5 QHTDEVVKGSMVI-AHYKIPRYVEFVA--DFPKTVSGKIQKYVLSKQMEDKMIL 55 (75)
Q Consensus 5 ~~l~~~~~~~~~l-~~~~~P~~i~~v~--~lP~t~~gKi~r~~l~~~~~~~~~~ 55 (75)
+++.+++..+ + +.|+.|..+.+++ ++|+|++||++|+.+++.+......
T Consensus 516 ~~l~~~l~~~--l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~ 567 (576)
T 3gqw_A 516 GQLIHALAAR--IQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAYAA 567 (576)
T ss_dssp HHHHHHHHHH--HHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH--HHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHHHhhh
Confidence 5688888888 8 7899999998887 8999999999999999988766543
No 31
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=98.07 E-value=1.3e-06 Score=60.26 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=39.3
Q ss_pred CHHHHHHHHhhCCCCCC-CCCcc-EEEEe--ccCCCCCCCcchHHHHHHHHHH
Q psy77 3 MIQHTDEVVKGSMVIAH-YKIPR-YVEFV--ADFPKTVSGKIQKYVLSKQMED 51 (75)
Q Consensus 3 ~~~~l~~~~~~~~~l~~-~~~P~-~i~~v--~~lP~t~~gKi~r~~l~~~~~~ 51 (75)
+.+++.++++++ ++. |+.|. .+.++ ++||+|++||++|+.|++.+..
T Consensus 517 ~~~~l~~~l~~~--l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 517 AQDNLFNEIFEL--VYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp HHHHHHHHHHHH--HHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--HHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHc
Confidence 356789999999 885 88886 56666 7999999999999999998754
No 32
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=97.35 E-value=4.4e-05 Score=51.09 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=32.9
Q ss_pred HHHHHHHHhhCCCCCCC-CCccEEEEe--ccCCCCCCCcchHH
Q psy77 4 IQHTDEVVKGSMVIAHY-KIPRYVEFV--ADFPKTVSGKIQKY 43 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~-~~P~~i~~v--~~lP~t~~gKi~r~ 43 (75)
.+++.++++++ |+.| +.|..+.++ +++|+|++||++|.
T Consensus 396 ~~~l~~~l~~~--l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~ 436 (443)
T 2y4o_A 396 RAALARELQHR--IKTMVGVSSGVTVLAAGGIPATATGKARRV 436 (443)
T ss_dssp HHHHHHHHHHH--HHHHTCCCCEEEEECTTCSCCCTTSCCCSE
T ss_pred HHHHHHHHHHH--HHHHhCCceEEEEeCCCcccCccCCcceEE
Confidence 36789999999 9876 599988888 59999999999875
No 33
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=96.93 E-value=0.00017 Score=40.32 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=22.2
Q ss_pred HHHHHHHhhCCCCC-CCCCccEEEEec--cCCCCCCCcchH
Q psy77 5 QHTDEVVKGSMVIA-HYKIPRYVEFVA--DFPKTVSGKIQK 42 (75)
Q Consensus 5 ~~l~~~~~~~~~l~-~~~~P~~i~~v~--~lP~t~~gKi~r 42 (75)
+++.+.++.. +. .+..|..+.+++ +||+| +||+.|
T Consensus 64 ~~l~~~i~~~--l~~~~~~~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3gxs_A 64 QALTREITRQ--LKDEILVTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp HHHHHHHHHH--HHHHHSSCCEEEEECTTCSCCC----CCC
T ss_pred HHHHHHHHHH--HHHhhCCceEEEEECCCCccCC-CCceEE
Confidence 4566666665 54 345555888887 89999 999875
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=96.86 E-value=0.0002 Score=47.83 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCCCCCCC-CCccEEEEe--ccCCCCCCCcchHH
Q psy77 4 IQHTDEVVKGSMVIAHY-KIPRYVEFV--ADFPKTVSGKIQKY 43 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~-~~P~~i~~v--~~lP~t~~gKi~r~ 43 (75)
.+++.++++++ |+.| +.|..+.++ +++|+|+ ||++|.
T Consensus 392 ~~~l~~~l~~~--l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~ 431 (437)
T 2y27_A 392 IQVAKQALAYD--IKSLIGVTAVINVLPVNGIERSV-GKARRV 431 (437)
T ss_dssp HHHHHHHHHHH--HHHHHCCCEEEEECCTTCSCCCS-SSCCCE
T ss_pred HHHHHHHHHHH--HHHhcCCceEEEEeCCCCccCCC-CcceEE
Confidence 46799999999 9988 599899888 5999999 999875
No 35
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=96.83 E-value=0.00018 Score=47.96 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=26.6
Q ss_pred HHHHHHHHhhCCCCCCC-CCccEEEEec--cCCCCCCCcchHH
Q psy77 4 IQHTDEVVKGSMVIAHY-KIPRYVEFVA--DFPKTVSGKIQKY 43 (75)
Q Consensus 4 ~~~l~~~~~~~~~l~~~-~~P~~i~~v~--~lP~t~~gKi~r~ 43 (75)
.+++.+++++. ++.+ +.|..+.+++ ++|+|+ ||++|.
T Consensus 390 ~~~l~~~l~~~--l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 390 LEKIRRDIIRQ--LKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp HHHHHHHHHHH--HHHHHSSCCEEEEECTTCCC--------CE
T ss_pred HHHHHHHHHHH--HHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 46889999999 9999 9999999999 999999 999764
No 36
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=95.86 E-value=0.0023 Score=35.38 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=18.5
Q ss_pred HHHHHHhhCCCCCC-CCCccEEEEec--cCCCCCCCcchH
Q psy77 6 HTDEVVKGSMVIAH-YKIPRYVEFVA--DFPKTVSGKIQK 42 (75)
Q Consensus 6 ~l~~~~~~~~~l~~-~~~P~~i~~v~--~lP~t~~gKi~r 42 (75)
++.+.++.. +.. +..|..+.+++ +||+| +||+.|
T Consensus 65 ~l~~~i~~~--l~~~~gv~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 65 ALTREITRQ--LKDEILVTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp HHHHHHHHH--HHHHHSSCCEEEEECTTCSCCC----CCC
T ss_pred hhHHHHHHH--HHHHhCCccceEEEcCCeecCC-CCCcch
Confidence 344445544 432 23555677774 79998 799876
No 37
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}
Probab=81.65 E-value=0.29 Score=33.31 Aligned_cols=19 Identities=11% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhcC
Q psy77 56 IIAVIHCQVQAYLSGLLDS 74 (75)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~ 74 (75)
+...++..++++|+.+|+-
T Consensus 42 p~~~~e~~l~~~w~~~l~~ 60 (508)
T 4f6l_B 42 PSNEIEQTFVDVFGEVLKQ 60 (508)
T ss_dssp -------------------
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 4567788999999999863
No 38
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=39.68 E-value=19 Score=14.98 Aligned_cols=14 Identities=14% Similarity=0.162 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHhhC
Q psy77 1 MLMIQHTDEVVKGS 14 (75)
Q Consensus 1 ~l~~~~l~~~~~~~ 14 (75)
|+++++|.+|+.+.
T Consensus 12 mlspddi~qw~s~d 25 (28)
T 2b3g_B 12 MLSPDDIEQWFTED 25 (28)
T ss_dssp GCCHHHHHHHHHC-
T ss_pred hcChHHHHHHhhcC
Confidence 57889999988764
No 39
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=27.33 E-value=34 Score=16.19 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=22.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy77 38 GKIQKYVLSKQMEDKMILIIAVIHCQVQAYLSGL 71 (75)
Q Consensus 38 gKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (75)
.-..|..+.+.+...+..+...+..++.+|+..+
T Consensus 7 ~~Ltk~Ql~qal~hLiknD~~Fl~~iHeAYl~sl 40 (46)
T 2wx4_A 7 LLLNSTQFVQAFTYLIQNDKEFANKLHKAYLNGC 40 (46)
T ss_dssp GSTTSHHHHHHHHHHHHHCTTHHHHHHHHHHC--
T ss_pred ccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 3345667777777777777777777777787655
No 40
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.66 E-value=54 Score=18.06 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhhc
Q psy77 58 AVIHCQVQAYLSGLLD 73 (75)
Q Consensus 58 ~~~~~~~~~~~~~~~~ 73 (75)
...+..++.+|+.+|+
T Consensus 24 ~~~E~~La~iW~~vL~ 39 (110)
T 2cq8_A 24 LVTAEAVRSVWQRILP 39 (110)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHhC
Confidence 4456678889999886
No 41
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=21.65 E-value=92 Score=15.80 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q psy77 55 LIIAVIHCQVQAYLSGLLDS 74 (75)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~ 74 (75)
.....++..+..+|+.+|+-
T Consensus 12 ~~~~~~e~~l~~i~~~vL~~ 31 (93)
T 4i4d_A 12 TRRRALERDIAAIWAETLGR 31 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhCC
Confidence 34566777888899988863
Done!