RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy77
(75 letters)
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 68.7 bits (169), Expect = 2e-15
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
IAHYKIPRY+ FV +FP TV+GKIQK+ + + M +++
Sbjct: 517 IAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEEL 553
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 57.9 bits (141), Expect = 8e-12
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+A +K+PRYV FV + P+T SGKIQK+ L
Sbjct: 318 LARFKVPRYVRFVDELPRTASGKIQKFKL 346
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 56.7 bits (137), Expect = 2e-11
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
IAH+K+PRY FV +FP TV+GK+QK+ +
Sbjct: 518 IAHFKVPRYFRFVDEFPMTVTGKVQKFRM 546
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 55.3 bits (134), Expect = 7e-11
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 18 AHYKIPRYVEFVADFPKTVSGKIQKYVL 45
++ +PRY+EFV + PKT + KIQK L
Sbjct: 393 PYFMVPRYIEFVDELPKTPTEKIQKAEL 420
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 51.6 bits (124), Expect = 2e-09
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+A YK PR++EFV + PKT +GKIQ++ L
Sbjct: 477 LAPYKYPRWIEFVDELPKTATGKIQRFKL 505
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 50.9 bits (122), Expect = 3e-09
Identities = 19/32 (59%), Positives = 27/32 (84%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
+A++ +PRYVEFVA PKT +GK+QK+VL +Q
Sbjct: 490 LAYFAVPRYVEFVAALPKTENGKVQKFVLREQ 521
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 50.0 bits (120), Expect = 5e-09
Identities = 18/29 (62%), Positives = 25/29 (86%), Gaps = 1/29 (3%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+AH+K+P+ VEFV + PKT +GKIQK+VL
Sbjct: 491 LAHFKVPKTVEFV-ELPKTATGKIQKFVL 518
>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009). This
is a small domain that is found C terminal to
pfam00501. It has a central beta sheet core that is
flanked by alpha helices.
Length = 43
Score = 46.3 bits (111), Expect = 6e-09
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 20 YKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50
Y +PR VEFV + PKT SGKI + +L
Sbjct: 1 YAVPREVEFVDELPKTRSGKILRRLLRAIAL 31
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 49.8 bits (119), Expect = 8e-09
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 16 VIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
V A YK PR VEFV + PKT++GKI++ L +
Sbjct: 496 VTAPYKYPRKVEFVQELPKTITGKIKRNELRDK 528
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 49.4 bits (118), Expect = 9e-09
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILIIA 58
+A YK+PR V FV + P+T SGKI + L ++ + L +
Sbjct: 493 LALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEPRLDLK 534
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 49.0 bits (118), Expect = 1e-08
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+A YK+P+ VEFV + P+ SGKI K L
Sbjct: 313 LAGYKVPKSVEFVDELPRNASGKILKREL 341
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 47.9 bits (114), Expect = 3e-08
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+A YK PR++ FV D PKT +GKIQ++ L
Sbjct: 477 LAPYKYPRWIVFVDDLPKTATGKIQRFKL 505
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 47.4 bits (113), Expect = 4e-08
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 23 PRYVEFVADFPKTVSGKIQKYVLSK 47
PR VEFV PKT SGKIQ+++L +
Sbjct: 416 PREVEFVPALPKTPSGKIQRFLLRQ 440
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 47.0 bits (112), Expect = 7e-08
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 16 VIAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
A YK PR +EFV + PKTVSGKI++ L
Sbjct: 399 RTAPYKYPREIEFVEELPKTVSGKIRRVEL 428
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 45.9 bits (110), Expect = 1e-07
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
+A +K+P+ + FV + P+T GKI K VL +Q +
Sbjct: 485 LAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEGK 521
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 45.7 bits (109), Expect = 2e-07
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
+A +K+P+ V F + PKT +GKIQK+VL +Q +
Sbjct: 506 LAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKS 539
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 45.6 bits (109), Expect = 2e-07
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+A YK+PR VEF + PK+ GKI + L
Sbjct: 439 LAAYKVPRQVEFRDELPKSAVGKILRREL 467
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 44.7 bits (106), Expect = 4e-07
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 16 VIAHYKIPRYVEFVADFPKTVSGKIQK 42
V A YK PR +EFV + PKT+SGKI++
Sbjct: 504 VTAPYKYPRIIEFVDELPKTISGKIRR 530
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 44.3 bits (105), Expect = 7e-07
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 16 VIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47
+A YK R +EFV + PKT+SGKI++ L K
Sbjct: 400 RLAPYKRIRRIEFVGELPKTISGKIRRVELRK 431
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 43.9 bits (104), Expect = 9e-07
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+A YK PR +EF+ P+T +GK+Q++ L
Sbjct: 407 LAPYKCPRQIEFLDTLPRTATGKLQRFRL 435
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 43.7 bits (104), Expect = 1e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 18 AHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
A YK+PR +EF+ + PK +GK+ K L ++
Sbjct: 483 AKYKVPRSIEFLDELPKNATGKVLKRALREK 513
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 42.6 bits (101), Expect = 2e-06
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+A K P +E V P+T SGK+QK+ L
Sbjct: 407 LAKQKWPERLEVVDALPRTPSGKVQKFEL 435
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 42.6 bits (101), Expect = 3e-06
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
+A +K+P+ V FV + P+ SGKI K L ++
Sbjct: 485 LAGFKVPKRVIFVDELPRNPSGKILKRELRERYAG 519
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 42.5 bits (100), Expect = 3e-06
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 16 VIAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
VIA YK PR + FV PKT +GKIQ++ L
Sbjct: 457 VIAPYKYPREINFVDALPKTQTGKIQRFRL 486
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 42.3 bits (100), Expect = 3e-06
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 16 VIAHYKIPRYVEFVADFPKTVSGKIQ 41
+A YK+PR +EFV + PKT SGKI
Sbjct: 313 RLAPYKVPRVIEFVDELPKTASGKID 338
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 42.1 bits (99), Expect = 4e-06
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49
+A YK+P+++ V P+T SGK+QK L +
Sbjct: 451 LAKYKVPKHLRLVDALPRTASGKLQKARLRDAL 483
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 41.9 bits (99), Expect = 5e-06
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 16 VIAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+A YK PR +EFV + PKT SGK+ +L
Sbjct: 401 RMAAYKYPRIIEFVDELPKTASGKVLWRLL 430
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 41.5 bits (98), Expect = 6e-06
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
I + IPR + FV + PKT SGKIQ+ +L
Sbjct: 488 IGPHAIPRKIRFVDELPKTASGKIQRRLL 516
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 40.8 bits (96), Expect = 1e-05
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLS 46
+A +K+P Y+E D P+ SGKI K L
Sbjct: 488 MAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 40.8 bits (95), Expect = 1e-05
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
IAHYK PR VEFV + P+T +GK+ K +L
Sbjct: 472 IAHYKAPRSVEFVDELPRTPTGKLVKGLL 500
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 40.7 bits (96), Expect = 1e-05
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 18 AHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47
A +K+P+ + FV PK +GKIQ+ L++
Sbjct: 316 AAFKVPKKILFVDALPKGATGKIQRRKLAE 345
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 39.5 bits (93), Expect = 3e-05
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+AHYK PR ++F + P+T +GK+ K L
Sbjct: 462 LAHYKCPRSIDFEDELPRTPTGKLYKRRL 490
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 39.2 bits (92), Expect = 4e-05
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 12 KGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
+ M A YK PR VEFV PK+ SGKI L +Q
Sbjct: 505 REHM--AAYKYPRIVEFVDSLPKSGSGKILWRQLQEQ 539
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 39.1 bits (92), Expect = 4e-05
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
+A +K P+ V FV + P+ GK+QK +L +Q D
Sbjct: 467 LARFKQPKRVFFVDELPRNTMGKVQKNLLREQYAD 501
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 38.5 bits (90), Expect = 6e-05
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47
+A ++ PR +EFV + P T +GKI++ L +
Sbjct: 409 LAAHEYPREIEFVDELPMTTTGKIRRRELRR 439
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 38.4 bits (89), Expect = 7e-05
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
+AHYK R V+FV PK++SGKI + +L ++M
Sbjct: 507 VAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSIN 543
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 38.4 bits (90), Expect = 8e-05
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 7 TDEVVKGSMVIAH-------YKIPRYVEFVADFPKTVSGKIQKYVL 45
E + ++ H Y +P + FV PK +GK+ + L
Sbjct: 304 DGESLDEKELLKHCRKHLPNYMVPAEIVFVDSLPKNANGKVDRSAL 349
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 38.1 bits (89), Expect = 1e-04
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 22/65 (33%)
Query: 5 QHTDEVVKGSMV-----------IAH-------YKIPRYVEFVADFPKTVSGKIQKYVLS 46
+H+ E VK +V A YK P++VEF + PKT GKI L
Sbjct: 494 EHSGEAVKLFVVKKDPALTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKI----LR 549
Query: 47 KQMED 51
+++ D
Sbjct: 550 RELRD 554
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 37.8 bits (88), Expect = 1e-04
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
++ +KIP+ FV + P T SGKI + +E++
Sbjct: 447 LSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQE 483
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 37.8 bits (88), Expect = 1e-04
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49
+A +K+P +EFV P T GKI K L +++
Sbjct: 504 LAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRL 536
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 37.6 bits (88), Expect = 1e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQK 42
+A +K+P +E V P T GK+ K
Sbjct: 455 LAKFKLPDRLEVVDSLPLTPVGKVDK 480
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 37.4 bits (87), Expect = 2e-04
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
+A YK P ++ + P+T SGKIQK++L K + ++
Sbjct: 502 VAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRL 538
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 37.0 bits (86), Expect = 2e-04
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 17 IAHYKIPRYVEFVADFPKTVSG---KIQKYVLSKQMEDKMI 54
+A +K+P V+ V FP T S KIQK+ L ++M +
Sbjct: 495 LAGFKVPARVQVVEAFPVTESANGAKIQKHRL-REMAQARL 534
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 36.8 bits (85), Expect = 3e-04
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52
+A YKIP+ + F+ + PK +GKIQK L Q++ +
Sbjct: 461 LAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKSR 496
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 36.9 bits (86), Expect = 3e-04
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
+A YK+P+ FV + P+ SGK+ ++ L KQ+ ++M
Sbjct: 448 LAKYKVPKRFYFVEELPRNASGKLLRHEL-KQLVEEM 483
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 36.7 bits (85), Expect = 3e-04
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+A YK+P VEFV P T GK+ K L
Sbjct: 497 LAEYKLPDRVEFVDSLPLTAVGKVDKKAL 525
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 35.4 bits (82), Expect = 8e-04
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54
IA +K+P VE V P T GK+ K L + + +
Sbjct: 498 IAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRAS 535
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 35.4 bits (82), Expect = 8e-04
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
++ K PR ++F + P+ +GK+ K +L
Sbjct: 475 LSRQKCPRSIDFEDELPRLPTGKLYKRLL 503
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 35.4 bits (82), Expect = 8e-04
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQK 42
+A YK+P+++E +A+ P+ SGKI K
Sbjct: 469 LAGYKVPKHIEIMAELPREDSGKIFK 494
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 34.6 bits (80), Expect = 0.001
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 20 YKIPRYVEFVADFPKTVSGKIQKYVL 45
YK+P+ VEF + PK+ GKI + L
Sbjct: 524 YKVPKLVEFRDELPKSNVGKILRREL 549
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 34.6 bits (80), Expect = 0.002
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 25 YVEFVADFPKTVSGKIQKYVLSKQMED 51
+V V PKT SGKIQ+Y L++Q +
Sbjct: 470 HVIPVRSIPKTTSGKIQRYKLAQQFLN 496
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 34.3 bits (79), Expect = 0.002
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 22 IPRYVEFVADFPKTVSGKIQKYVLSKQM 49
IP + P+T SGKIQK+ L + +
Sbjct: 515 IPERLVVRDALPRTPSGKIQKFRLREML 542
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 34.3 bits (79), Expect = 0.003
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 23 PRYVEFVADFPKTVSGKIQKYVLSKQ 48
P YV A+ P+T + K+ K LS +
Sbjct: 479 PSYVRVCAELPRTATFKVLKRQLSAE 504
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 34.1 bits (79), Expect = 0.003
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 23 PRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
P + FV PKT SGKI + +L K + L
Sbjct: 562 PDEIIFVPGLPKTRSGKIMRRILRKIAAGEEEL 594
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 34.0 bits (78), Expect = 0.003
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
IA + +P V FV P T +GKI K L +Q +D
Sbjct: 500 IAKWWMPDDVAFVDAIPHTATGKILKTALREQFKD 534
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 33.7 bits (77), Expect = 0.004
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 19 HYKIPRYVEFVADFPKTVSGKIQKYVL 45
Y +P+ V F PKT +GKIQK+VL
Sbjct: 527 AYWVPKSVVF-GPLPKTATGKIQKHVL 552
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 33.7 bits (78), Expect = 0.004
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 18 AHYKIPRYVEFVADFPKTVSGKIQKYVL 45
A YK+PR V F+ + P+ +GK+ K L
Sbjct: 518 ARYKVPRDVVFLDELPRNPTGKVLKREL 545
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 33.5 bits (77), Expect = 0.004
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 23 PRYVEFVADFPKTVSGKIQKYVLSKQ 48
PRYV AD P T + K+ K L Q
Sbjct: 478 PRYVRIAADLPSTATNKVLKRELIAQ 503
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 33.4 bits (77), Expect = 0.005
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 23 PRYVEFVA--DFPKTVSGKIQKYVLSKQMED 51
P YV +A DFPKT GKIQ+ L K+ E
Sbjct: 529 PAYVIPLAKEDFPKTSLGKIQRAQLRKRFEA 559
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 33.3 bits (77), Expect = 0.005
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQK 42
+A YK P+ + + P+ SGKI +
Sbjct: 377 LAKYKRPKRWYPLPELPRNASGKIDR 402
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 32.9 bits (75), Expect = 0.006
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 2 LMIQHTDEVVKGSMVIAH-------YKIPRYVEFVADFPKTVSGKI 40
++I D + V AH YK PR +EF + PKT GKI
Sbjct: 504 VVIVKKDPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKI 549
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 33.2 bits (76), Expect = 0.006
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 23 PRYVEFVADFPKTVSGKIQKYVLS 46
PR + FV + PKT SGKI + +L
Sbjct: 419 PREIHFVDNLPKTRSGKIMRRLLK 442
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 33.1 bits (75), Expect = 0.006
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52
+A YK+P+ EF + PKT GKI + VL ++ + K
Sbjct: 521 LAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRK 556
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 32.9 bits (76), Expect = 0.007
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 22 IPRYVEFVADFPKTVSGKIQKYVL 45
+P V FV + PKT GK K L
Sbjct: 492 LPDRVVFVDEIPKTSVGKFDKKAL 515
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 32.6 bits (75), Expect = 0.008
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 23 PRYVEFVADFPKTVSGKIQKYVLSKQME 50
PR +EF PKT SGKI + VL K E
Sbjct: 531 PREIEFKDKLPKTRSGKIMRRVL-KAWE 557
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 32.8 bits (75), Expect = 0.008
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
+A + IP V FV P T +GK+QK L +Q D
Sbjct: 499 VAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRD 533
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 32.6 bits (75), Expect = 0.009
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGK 39
+A YK+PR + V P+ SGK
Sbjct: 336 LAGYKLPRAIVVVDTVPRAPSGK 358
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 32.8 bits (74), Expect = 0.009
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 22 IPRYVEFVADFPKTVSGKIQKYVLSK 47
+P F + P+T +GK K L +
Sbjct: 484 LPDAYVFAEEIPRTSAGKFLKRALRE 509
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 32.6 bits (75), Expect = 0.009
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKI 40
+A YK R V FV PK+ SGKI
Sbjct: 476 VAPYKKVRKVVFVDAIPKSPSGKI 499
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 32.4 bits (74), Expect = 0.010
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
+A YK P+ +E V P+ +GK+ K L ++
Sbjct: 490 LARYKHPKALEIVDALPRNPAGKVLKTELRER 521
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 31.7 bits (72), Expect = 0.016
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 7 TDEVVKGSMV--IAHYKIPRYVEFVADFPKTVSGKI 40
T E V M + YK+P+ VEF + P T GKI
Sbjct: 511 TKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKI 546
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 31.4 bits (72), Expect = 0.019
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
H DE + Y P ++ A T + K QK L K+
Sbjct: 403 AHLDEQLP------AYARPLFLRVQAAMETTGTFKYQKTDLRKE 440
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 31.4 bits (72), Expect = 0.019
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQK 42
+A YKIP+ V V + P+ GK+QK
Sbjct: 405 LAPYKIPKRVIVVDELPRNAMGKVQK 430
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 31.8 bits (72), Expect = 0.020
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50
+A +K+PR ++ + P+ SGK+ K VL ++
Sbjct: 463 LASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN 496
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 31.1 bits (71), Expect = 0.028
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 8 DEVVK--GSMVIAHYKIPRYVEFVADFPKTVSGKIQ 41
EV V + ++ V FV + PK+ SGKI
Sbjct: 452 QEVKDYVAKKVAKYKQLRGGVVFVDEIPKSPSGKIL 487
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 31.0 bits (71), Expect = 0.029
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGK 39
+A YK+PR + FV + ++ +GK
Sbjct: 498 LAGYKVPRAIWFVDEVQRSPAGK 520
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 31.0 bits (71), Expect = 0.032
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+ Y +P + + P T SGK+ + L
Sbjct: 418 LPSYMVPSVYVPLDELPLTASGKVDRKAL 446
>gnl|CDD|226153 COG3626, PhnI, Uncharacterized enzyme of phosphonate metabolism
[Inorganic ion transport and metabolism].
Length = 367
Score = 30.9 bits (70), Expect = 0.034
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 4 IQHTDEVVKGSMVIAHYKIPRYVEFVAD 31
+ H D V V +H K+P YV+F A+
Sbjct: 316 LSHADNVEAAGFV-SHLKLPHYVDFQAE 342
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 30.8 bits (70), Expect = 0.036
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 18 AHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50
A YK+P + V P T +GK++K L E
Sbjct: 533 AVYKVPE-IRIVDALPMTATGKVRKQDLQALAE 564
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 30.4 bits (69), Expect = 0.058
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50
+A YK+P+ F PK+ GKI K ++ +++E
Sbjct: 484 VARYKLPKRFFFWDALPKSGYGKITKKMVREELE 517
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 30.3 bits (69), Expect = 0.063
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 23 PRYVEFVADFPKTVSGKIQKYVLSK 47
P + FV PKT SGKI + +L K
Sbjct: 574 PDKIRFVPGLPKTRSGKIMRRLLRK 598
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 29.9 bits (68), Expect = 0.084
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 23 PRYVEFVADFPKTVSGKIQKYVL 45
PR V FV+D PKT +GKI + V+
Sbjct: 434 PREVHFVSDLPKTRNGKIMRRVI 456
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 29.7 bits (67), Expect = 0.085
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
I + R + V PKT +GKI + ++SK + D
Sbjct: 589 IESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLND 623
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 29.5 bits (66), Expect = 0.095
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 9 EVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+K V Y IP +E V P T +GKIQK+ L
Sbjct: 501 AFLKAQKVALQY-IPERLEVVDALPATPAGKIQKFRL 536
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 29.5 bits (67), Expect = 0.096
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 19 HYKIPRYVEFVADFPKTVSGKI 40
Y IPR ++ P +GKI
Sbjct: 421 PYMIPRRFVYLDSLPLNANGKI 442
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 29.8 bits (67), Expect = 0.10
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 20 YKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
Y +P + P+ +GKI + L+K+
Sbjct: 489 YMVPALIHVRQALPRNANGKIDRKALAKE 517
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 29.2 bits (66), Expect = 0.13
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 23 PRYVEFVADFPKTVSGKIQKYVLSK 47
R V FV PKT SGKI + L K
Sbjct: 561 FRNVVFVKRLPKTRSGKILRRTLRK 585
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 29.2 bits (66), Expect = 0.15
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQK 42
++ +K PR V FV P+ GK+ K
Sbjct: 439 LSVHKRPREVRFVDALPRNAMGKVLK 464
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 28.9 bits (66), Expect = 0.16
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 19 HYKIPRYVEFVADFPKTVSGKI 40
Y +P + P T +GK+
Sbjct: 419 DYMVPSAFVVLDALPLTPNGKV 440
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 28.6 bits (64), Expect = 0.20
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKI 40
+A+YK+PR + + + P+ +GKI
Sbjct: 506 LANYKVPRDIVVLDELPRGATGKI 529
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 28.4 bits (64), Expect = 0.24
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 22 IPRYVEFVADFPKTVSGKIQK 42
+P++V + PKT GKI K
Sbjct: 541 VPKHVRILDALPKTAVGKIFK 561
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 28.6 bits (65), Expect = 0.24
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 23 PRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
P ++F PKT SGKI + +L K E + IL
Sbjct: 582 PDVIQFAPGLPKTRSGKIMRRILRKIAEGEEIL 614
>gnl|CDD|218784 pfam05861, PhnI, Bacterial phosphonate metabolism protein (PhnI).
This family consists of several Proteobacterial
phosphonate metabolism protein (PhnI) sequences.
Bacteria that use phosphonates as a phosphorus source
must be able to break the stable carbon-phosphorus bond.
In Escherichia coli phosphonates are broken down by a
C-P lyase that has a broad substrate specificity. The
genes for phosphonate uptake and degradation in E. coli
are organised in an operon of 14 genes, named phnC to
phnP. Three gene products (PhnC, PhnD and PhnE) comprise
a binding protein-dependent phosphonate transporter,
which also transports phosphate, phosphite, and certain
phosphate esters such as phosphoserine; two gene
products (PhnF and PhnO) may have a role in gene
regulation; and nine gene products (PhnG, PhnH, PhnI,
PhnJ, PhnK, PhnL, PhnM, PhnN, and PhnP) probably
comprise a membrane-associated C-P lyase enzyme complex.
Length = 356
Score = 28.3 bits (64), Expect = 0.30
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 3 MIQHTDEVVKGSMVIAHYKIPRYVEFVAD 31
++ HTD V + + ++H K+P YV+F ++
Sbjct: 315 VLSHTDNV-EATGFVSHLKLPHYVDFQSE 342
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 28.2 bits (63), Expect = 0.33
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 20 YKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52
Y +P ++ + T + K QK VL K+ D
Sbjct: 436 YAVPLFLRLTEEVATTGNHKQQKGVLRKEGVDP 468
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 28.2 bits (63), Expect = 0.36
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 20 YKIPR-YVEFVADFPKTVSGKIQKYVLSKQ 48
+KIP+ +V++ FP T +GKI++ + ++
Sbjct: 522 FKIPKLFVQWRKPFPLTTTGKIRRDEVRRE 551
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 28.0 bits (62), Expect = 0.37
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+ +++P VEFV + P+T GK+ ++ L
Sbjct: 512 LGKHELPVAVEFVDELPRTPVGKLSRHEL 540
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional.
Length = 728
Score = 27.7 bits (62), Expect = 0.47
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 24 RYVEFVADFPKTVSGKIQKYVLSKQM 49
V V FP+T S K+ + VL +Q+
Sbjct: 694 SAVVIVPSFPRTASNKVMRRVLRQQL 719
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 27.5 bits (62), Expect = 0.50
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 19 HYKIPRYVEFVADFPKTVSGKI 40
Y +P + + P T +GK+
Sbjct: 412 AYMVPAAFVQLDELPLTPNGKV 433
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 27.5 bits (62), Expect = 0.50
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 23 PRYV----EFVADFPKTVSGKIQ 41
PR+V V D P+T+SGK
Sbjct: 593 PRHVPDKIIAVPDIPRTLSGKKV 615
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 27.6 bits (62), Expect = 0.52
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 20 YKIPRYVEFVADFPKTVSGKI 40
Y +P + P T +GK+
Sbjct: 451 YMVPSRFVVLDALPLTANGKV 471
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 27.2 bits (60), Expect = 0.66
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL----SKQMED 51
I + P + + PKT SGKI + +L S+Q+++
Sbjct: 606 IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDE 644
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 27.3 bits (60), Expect = 0.71
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQK 42
+ H+ PR V F+ + PK +GKI K
Sbjct: 520 LPHFMCPRKVVFLQELPKNGNGKILK 545
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 27.1 bits (61), Expect = 0.75
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 20 YKIPRYVEFVADFPKTVSGKIQKYVL 45
Y +P + + P T +GK+ + L
Sbjct: 449 YMVPAAFVVLDELPLTANGKVDRRAL 474
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 26.6 bits (59), Expect = 0.99
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQK 42
+A YK+P E + + P SGKI +
Sbjct: 408 LAKYKVPIAFEKLDELPYNASGKILR 433
>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional.
Length = 499
Score = 26.7 bits (59), Expect = 1.2
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 20 YKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
+K+ R V+ V + P+ S K+ + VL Q++
Sbjct: 461 FKVSR-VKIVPELPRNASNKLLRRVLRDQLKK 491
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 26.5 bits (58), Expect = 1.4
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 16 VIAHYKI-------PRYVEFVADFPKTVSGKIQKYVLS 46
+ A ++ P + V D P+T SGK+ + L+
Sbjct: 489 IAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLA 526
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 25.8 bits (57), Expect = 2.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKI 40
+A Y++P +E V + PK +GK+
Sbjct: 379 LAPYQVPHEIESVTEIPKNANGKV 402
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 26.0 bits (57), Expect = 2.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 23 PRYVEFVADFPKTVSGKI 40
P V FVA PKT SGK+
Sbjct: 576 PARVYFVAALPKTRSGKL 593
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 25.7 bits (57), Expect = 2.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 23 PRYVEFVADFPKTVSGKIQKYVL 45
P+ V+FV P T GK K L
Sbjct: 489 PKQVDFVDSLPLTALGKPDKKAL 511
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 25.7 bits (57), Expect = 2.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKI 40
+ YK+PR V + P+ GK+
Sbjct: 535 LTRYKVPRRFYHVDELPRDQLGKV 558
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 25.7 bits (57), Expect = 2.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 23 PRYVEFVADFPKTVSGKI 40
P V FV+ PKT SGK+
Sbjct: 577 PARVWFVSALPKTRSGKL 594
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 25.6 bits (56), Expect = 3.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYV 44
H+D + GS+VI Y F P VSG I+K+V
Sbjct: 477 VHSDAFLDGSLVIFRLAPQDYHRF--HVP--VSGVIEKFV 512
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 25.3 bits (56), Expect = 3.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 22 IPRYVEFVADFPKTVSGKIQKYVL 45
+P+ + + P T GKI K L
Sbjct: 330 VPKAIYIIDALPLTAVGKIFKPRL 353
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 25.3 bits (56), Expect = 3.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 19 HYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50
YK V FV PK SGKI + L ++
Sbjct: 504 FYKRIHKVFFVDSIPKAPSGKILRKDLRAKLA 535
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 24.8 bits (54), Expect = 5.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKI 40
+A YK R V FV PK+ +GKI
Sbjct: 520 VAPYKKVRKVVFVQSIPKSPAGKI 543
>gnl|CDD|239198 cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-domain-containing
EMAP2-like proteins. This family contains a diverse
fraction of tRNA binding proteins, including
Caenorhabditis elegans methionyl-tRNA synthetase
(CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS),
Saccharomyces cerevisiae Arc1p, human p43 and EMAP2.
CeMetRS and hTyrRS aminoacylate their cognate tRNAs.
Arc1p is a transactivator of yeast methionyl-tRNA and
glutamyl-tRNA synthetases. This domain has general
tRNA binding properties. In a subset of this family
this domain has the added capability of a cytokine. For
example the p43 component of the Human aminoacyl-tRNA
synthetase complex is cleaved to release EMAP-II
cytokine. EMAP-II has multiple activities during
apoptosis, angiogenesis and inflammation and
participates in malignant transformation. A
EMAP-II-like cytokine also is released from hTyrRS upon
cleavage. The active cytokine heptapeptide locates to
this domain.
Length = 105
Score = 24.1 bits (53), Expect = 6.5
Identities = 10/38 (26%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 25 YVEFVADF----PKTVSGKIQKYVLSKQMEDKMILIIA 58
YVE + D P+T+ + K+V +QM++++++++
Sbjct: 26 YVEEI-DLGEEEPRTIVSGLVKFVPLEQMQNRLVVVLC 62
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 24.5 bits (54), Expect = 7.2
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 1 MLMIQHTDEVVKGSMVIAH 19
LM + DE+++G ++AH
Sbjct: 179 RLMRERADEIIEGIRILAH 197
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 24.3 bits (53), Expect = 7.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 20 YKIPRYVEFVADFPKTVSGKI 40
Y IPR + P T +GKI
Sbjct: 471 YMIPRKFIYRDQLPLTANGKI 491
>gnl|CDD|147887 pfam05974, DUF892, Domain of unknown function (DUF892). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 159
Score = 24.1 bits (53), Expect = 8.0
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 6/25 (24%)
Query: 7 TDEVVKGSMVIA------HYKIPRY 25
DEVVK + +IA HY+I Y
Sbjct: 89 GDEVVKDAALIAAAQAVEHYEIAAY 113
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.384
Gapped
Lambda K H
0.267 0.0868 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,715,134
Number of extensions: 280181
Number of successful extensions: 422
Number of sequences better than 10.0: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 123
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (23.9 bits)